Multiple sequence alignment - TraesCS4D01G145000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G145000 chr4D 100.000 5195 0 0 1 5195 133726396 133731590 0.000000e+00 9594.0
1 TraesCS4D01G145000 chr4D 98.551 69 1 0 4742 4810 8977879 8977811 7.060000e-24 122.0
2 TraesCS4D01G145000 chr4D 97.183 71 2 0 4742 4812 421970123 421970193 2.540000e-23 121.0
3 TraesCS4D01G145000 chr4D 94.805 77 2 2 4738 4813 465203211 465203286 9.140000e-23 119.0
4 TraesCS4D01G145000 chr4D 92.593 81 4 2 4742 4822 20141566 20141644 1.180000e-21 115.0
5 TraesCS4D01G145000 chr4A 95.664 1130 39 7 3535 4657 427457998 427456872 0.000000e+00 1807.0
6 TraesCS4D01G145000 chr4A 93.299 1149 57 12 1544 2680 427488216 427487076 0.000000e+00 1677.0
7 TraesCS4D01G145000 chr4A 96.334 873 29 1 2672 3541 427459137 427458265 0.000000e+00 1432.0
8 TraesCS4D01G145000 chr4A 94.191 482 24 3 1064 1545 427488796 427488319 0.000000e+00 732.0
9 TraesCS4D01G145000 chr4A 91.925 161 12 1 4946 5106 703794881 703794722 1.880000e-54 224.0
10 TraesCS4D01G145000 chr4A 90.964 166 13 2 4936 5101 606807485 606807648 6.770000e-54 222.0
11 TraesCS4D01G145000 chr4A 91.304 115 6 2 954 1068 427503442 427503332 2.510000e-33 154.0
12 TraesCS4D01G145000 chr4A 94.845 97 3 1 5100 5194 427456781 427456685 3.240000e-32 150.0
13 TraesCS4D01G145000 chr4A 88.525 61 5 2 1848 1906 427487776 427487716 7.220000e-09 73.1
14 TraesCS4D01G145000 chr3D 94.566 957 38 7 3 950 598900528 598899577 0.000000e+00 1467.0
15 TraesCS4D01G145000 chr3D 92.308 156 11 1 4946 5101 613441510 613441356 2.440000e-53 220.0
16 TraesCS4D01G145000 chr7D 93.633 958 43 10 3 947 63876846 63877798 0.000000e+00 1415.0
17 TraesCS4D01G145000 chr7D 93.535 959 44 9 3 947 235371679 235372633 0.000000e+00 1411.0
18 TraesCS4D01G145000 chr7D 81.643 1351 159 48 1983 3309 75267379 75268664 0.000000e+00 1038.0
19 TraesCS4D01G145000 chr7D 88.038 418 41 7 3310 3724 75268709 75269120 2.170000e-133 486.0
20 TraesCS4D01G145000 chr7D 80.784 536 64 18 3961 4466 75269912 75270438 2.930000e-102 383.0
21 TraesCS4D01G145000 chr7D 88.235 170 15 4 4932 5101 595763592 595763756 1.140000e-46 198.0
22 TraesCS4D01G145000 chr7D 93.233 133 9 0 1333 1465 75266970 75267102 4.100000e-46 196.0
23 TraesCS4D01G145000 chr7D 87.952 166 19 1 4936 5101 513207496 513207660 1.480000e-45 195.0
24 TraesCS4D01G145000 chr7D 91.176 102 8 1 4641 4742 82851123 82851223 2.520000e-28 137.0
25 TraesCS4D01G145000 chr1D 94.457 920 39 6 39 950 9581885 9580970 0.000000e+00 1406.0
26 TraesCS4D01G145000 chr1D 93.403 955 50 7 3 950 148666756 148665808 0.000000e+00 1402.0
27 TraesCS4D01G145000 chr1D 93.389 953 49 8 3 947 38292257 38293203 0.000000e+00 1399.0
28 TraesCS4D01G145000 chr1D 92.565 955 57 7 3 950 419292189 419291242 0.000000e+00 1358.0
29 TraesCS4D01G145000 chr1D 85.923 959 113 18 3312 4261 160539723 160538778 0.000000e+00 1003.0
30 TraesCS4D01G145000 chr1D 90.385 156 14 1 4946 5101 62931322 62931476 2.450000e-48 204.0
31 TraesCS4D01G145000 chr1D 84.337 166 16 3 4652 4808 427909957 427909793 2.510000e-33 154.0
32 TraesCS4D01G145000 chr2D 93.284 953 52 6 2 947 478103925 478104872 0.000000e+00 1395.0
33 TraesCS4D01G145000 chr3B 92.662 954 54 10 3 947 805371540 805372486 0.000000e+00 1360.0
34 TraesCS4D01G145000 chr3B 94.565 92 4 1 4652 4742 63472558 63472649 1.950000e-29 141.0
35 TraesCS4D01G145000 chr3B 97.222 72 1 1 4738 4809 31124758 31124688 2.540000e-23 121.0
36 TraesCS4D01G145000 chr7B 82.523 1110 120 38 2190 3277 20835633 20836690 0.000000e+00 907.0
37 TraesCS4D01G145000 chr7B 85.038 655 80 13 3310 3958 20836749 20837391 0.000000e+00 651.0
38 TraesCS4D01G145000 chr7B 79.648 511 69 20 3961 4438 20837962 20838470 8.340000e-88 335.0
39 TraesCS4D01G145000 chr7B 84.286 280 38 6 3966 4242 20846506 20846782 8.570000e-68 268.0
40 TraesCS4D01G145000 chr7B 93.233 133 9 0 1333 1465 20835096 20835228 4.100000e-46 196.0
41 TraesCS4D01G145000 chr7B 92.784 97 7 0 4646 4742 652145137 652145233 1.950000e-29 141.0
42 TraesCS4D01G145000 chr7B 93.617 94 5 1 4650 4742 692342465 692342372 7.010000e-29 139.0
43 TraesCS4D01G145000 chr7A 81.640 1171 146 30 2132 3277 79540027 79541153 0.000000e+00 907.0
44 TraesCS4D01G145000 chr7A 85.213 656 86 10 3310 3959 79541212 79541862 0.000000e+00 664.0
45 TraesCS4D01G145000 chr7A 80.747 509 62 19 3961 4438 79542471 79542974 1.060000e-96 364.0
46 TraesCS4D01G145000 chr7A 92.424 132 10 0 1333 1464 79539486 79539617 6.870000e-44 189.0
47 TraesCS4D01G145000 chr2B 85.185 351 34 12 3994 4328 116324534 116324186 1.380000e-90 344.0
48 TraesCS4D01G145000 chr1B 84.615 351 36 12 3994 4328 478568515 478568167 3.000000e-87 333.0
49 TraesCS4D01G145000 chr1B 89.764 254 25 1 3426 3678 478568773 478568520 1.800000e-84 324.0
50 TraesCS4D01G145000 chr3A 91.667 156 12 1 4946 5101 340796793 340796947 1.130000e-51 215.0
51 TraesCS4D01G145000 chr2A 89.941 169 14 3 4934 5101 36417035 36416869 1.130000e-51 215.0
52 TraesCS4D01G145000 chr2A 95.652 92 3 1 4652 4742 30175256 30175347 4.190000e-31 147.0
53 TraesCS4D01G145000 chr1A 86.458 192 20 4 4069 4255 223461542 223461352 6.820000e-49 206.0
54 TraesCS4D01G145000 chr1A 91.000 100 7 2 4645 4742 157828682 157828583 3.260000e-27 134.0
55 TraesCS4D01G145000 chr6A 87.952 166 18 2 4936 5101 13486371 13486208 1.480000e-45 195.0
56 TraesCS4D01G145000 chr6A 84.713 157 14 6 4653 4808 52115231 52115378 1.170000e-31 148.0
57 TraesCS4D01G145000 chr4B 94.444 90 5 0 4653 4742 15617673 15617584 7.010000e-29 139.0
58 TraesCS4D01G145000 chr5D 98.529 68 1 0 4742 4809 120920847 120920780 2.540000e-23 121.0
59 TraesCS4D01G145000 chr5D 98.529 68 1 0 4742 4809 420996333 420996400 2.540000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G145000 chr4D 133726396 133731590 5194 False 9594.000000 9594 100.000000 1 5195 1 chr4D.!!$F2 5194
1 TraesCS4D01G145000 chr4A 427456685 427459137 2452 True 1129.666667 1807 95.614333 2672 5194 3 chr4A.!!$R3 2522
2 TraesCS4D01G145000 chr4A 427487076 427488796 1720 True 827.366667 1677 92.005000 1064 2680 3 chr4A.!!$R4 1616
3 TraesCS4D01G145000 chr3D 598899577 598900528 951 True 1467.000000 1467 94.566000 3 950 1 chr3D.!!$R1 947
4 TraesCS4D01G145000 chr7D 63876846 63877798 952 False 1415.000000 1415 93.633000 3 947 1 chr7D.!!$F1 944
5 TraesCS4D01G145000 chr7D 235371679 235372633 954 False 1411.000000 1411 93.535000 3 947 1 chr7D.!!$F3 944
6 TraesCS4D01G145000 chr7D 75266970 75270438 3468 False 525.750000 1038 85.924500 1333 4466 4 chr7D.!!$F6 3133
7 TraesCS4D01G145000 chr1D 9580970 9581885 915 True 1406.000000 1406 94.457000 39 950 1 chr1D.!!$R1 911
8 TraesCS4D01G145000 chr1D 148665808 148666756 948 True 1402.000000 1402 93.403000 3 950 1 chr1D.!!$R2 947
9 TraesCS4D01G145000 chr1D 38292257 38293203 946 False 1399.000000 1399 93.389000 3 947 1 chr1D.!!$F1 944
10 TraesCS4D01G145000 chr1D 419291242 419292189 947 True 1358.000000 1358 92.565000 3 950 1 chr1D.!!$R4 947
11 TraesCS4D01G145000 chr1D 160538778 160539723 945 True 1003.000000 1003 85.923000 3312 4261 1 chr1D.!!$R3 949
12 TraesCS4D01G145000 chr2D 478103925 478104872 947 False 1395.000000 1395 93.284000 2 947 1 chr2D.!!$F1 945
13 TraesCS4D01G145000 chr3B 805371540 805372486 946 False 1360.000000 1360 92.662000 3 947 1 chr3B.!!$F2 944
14 TraesCS4D01G145000 chr7B 20835096 20838470 3374 False 522.250000 907 85.110500 1333 4438 4 chr7B.!!$F3 3105
15 TraesCS4D01G145000 chr7A 79539486 79542974 3488 False 531.000000 907 85.006000 1333 4438 4 chr7A.!!$F1 3105
16 TraesCS4D01G145000 chr1B 478568167 478568773 606 True 328.500000 333 87.189500 3426 4328 2 chr1B.!!$R1 902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 71 1.691219 GGGGAGGGTGATTTGCTGA 59.309 57.895 0.00 0.00 0.00 4.26 F
1069 1090 0.533032 CCTCGACAAGTTCCTCCTCC 59.467 60.000 0.00 0.00 0.00 4.30 F
1235 1256 0.038310 GGGTTTCCTCCCCTCTTGTG 59.962 60.000 0.00 0.00 41.54 3.33 F
1736 1879 0.731514 TGACGAGGACGAATTCGCAC 60.732 55.000 27.03 19.29 44.43 5.34 F
1972 2116 1.112113 TGGATCGGAGGAAGCAGTAC 58.888 55.000 0.00 0.00 0.00 2.73 F
2118 2275 1.257750 TGGGTCTCCACCATCTGTCG 61.258 60.000 0.00 0.00 45.94 4.35 F
3739 4251 2.173356 CCTCTCATGGGGATGCACTAAA 59.827 50.000 0.00 0.00 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 1195 0.036952 ATGGTTGTCTCGCTCCACTG 60.037 55.000 0.00 0.00 32.60 3.66 R
1891 2035 2.030007 GTGCTTGTTATGCAAAGCAGGA 60.030 45.455 20.87 0.24 43.65 3.86 R
2463 2644 2.884012 TGCGGCATATTACCAGAAATGG 59.116 45.455 0.00 0.00 0.00 3.16 R
2908 3089 3.128764 CCTCTTTGATAAAAAGCCCGTCC 59.871 47.826 0.00 0.00 0.00 4.79 R
3770 4282 2.888594 TCAATTGGACAGCGCTACTAC 58.111 47.619 10.99 0.00 0.00 2.73 R
3982 5113 5.559035 GCAACACGAGCCATCATTATAGTTC 60.559 44.000 0.00 0.00 0.00 3.01 R
4687 5859 0.027979 GGTGAGTGTATACGCGCGTA 59.972 55.000 40.65 40.65 37.90 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.131791 ACTAAACACCATGATAAGTTTTTGACT 57.868 29.630 0.00 0.00 41.47 3.41
58 71 1.691219 GGGGAGGGTGATTTGCTGA 59.309 57.895 0.00 0.00 0.00 4.26
154 167 7.530010 AGAATCACCATGATAACTTTTTGTCG 58.470 34.615 0.00 0.00 35.76 4.35
156 169 4.517075 TCACCATGATAACTTTTTGTCGCA 59.483 37.500 0.00 0.00 0.00 5.10
181 194 6.070251 AGGAAAAAGTTGTTCAAAACATCCCT 60.070 34.615 8.06 0.00 41.79 4.20
381 394 6.823182 CACATAATGTTTAGTGTCATGAGGGA 59.177 38.462 0.00 0.00 0.00 4.20
382 395 7.500227 CACATAATGTTTAGTGTCATGAGGGAT 59.500 37.037 0.00 0.00 0.00 3.85
443 456 7.372451 TCGTGGTAATTTTTGACCTATGAAG 57.628 36.000 0.00 0.00 36.62 3.02
500 513 7.438459 GTGCAAGTACCTTGATAATAGACGAAT 59.562 37.037 8.11 0.00 43.42 3.34
579 593 9.338968 AGGTTGATGTACATATACCCTGATAAT 57.661 33.333 24.74 10.18 0.00 1.28
640 654 9.569122 AGACCTTATAACTTGTGTACAAAACAT 57.431 29.630 0.00 0.00 41.10 2.71
667 681 7.016858 AGTGGTAACTTTGAAGGGATGTAGTTA 59.983 37.037 0.00 0.00 30.14 2.24
726 740 3.304123 GCACGGTAAGTTATGCAACACAA 60.304 43.478 0.00 0.00 38.00 3.33
932 953 8.568794 ACTTTAAAATGAAAGAAGTAGAGGTGC 58.431 33.333 3.04 0.00 38.48 5.01
947 968 2.289547 GAGGTGCGACAGTTTTGCTTAA 59.710 45.455 0.00 0.00 35.31 1.85
950 971 4.048504 GGTGCGACAGTTTTGCTTAAATT 58.951 39.130 0.00 0.00 35.31 1.82
951 972 5.009210 AGGTGCGACAGTTTTGCTTAAATTA 59.991 36.000 0.00 0.00 35.31 1.40
952 973 5.688176 GGTGCGACAGTTTTGCTTAAATTAA 59.312 36.000 0.00 0.00 35.31 1.40
953 974 6.199342 GGTGCGACAGTTTTGCTTAAATTAAA 59.801 34.615 0.00 0.00 35.31 1.52
954 975 7.254151 GGTGCGACAGTTTTGCTTAAATTAAAA 60.254 33.333 0.00 0.00 35.31 1.52
955 976 7.787480 GTGCGACAGTTTTGCTTAAATTAAAAG 59.213 33.333 0.00 0.00 35.31 2.27
956 977 7.702772 TGCGACAGTTTTGCTTAAATTAAAAGA 59.297 29.630 4.97 0.00 35.31 2.52
957 978 7.996551 GCGACAGTTTTGCTTAAATTAAAAGAC 59.003 33.333 4.97 0.00 0.00 3.01
958 979 8.198816 CGACAGTTTTGCTTAAATTAAAAGACG 58.801 33.333 4.97 0.00 0.00 4.18
959 980 9.228636 GACAGTTTTGCTTAAATTAAAAGACGA 57.771 29.630 4.97 0.00 0.00 4.20
960 981 9.575783 ACAGTTTTGCTTAAATTAAAAGACGAA 57.424 25.926 4.97 1.31 0.00 3.85
972 993 8.496872 AATTAAAAGACGAATTTGTTACCGTG 57.503 30.769 0.00 0.00 35.22 4.94
973 994 3.531262 AAGACGAATTTGTTACCGTGC 57.469 42.857 0.00 0.00 35.22 5.34
974 995 2.485903 AGACGAATTTGTTACCGTGCA 58.514 42.857 0.00 0.00 35.22 4.57
975 996 3.071479 AGACGAATTTGTTACCGTGCAT 58.929 40.909 0.00 0.00 35.22 3.96
976 997 3.500680 AGACGAATTTGTTACCGTGCATT 59.499 39.130 0.00 0.00 35.22 3.56
977 998 4.023536 AGACGAATTTGTTACCGTGCATTT 60.024 37.500 0.00 0.00 35.22 2.32
978 999 3.978217 ACGAATTTGTTACCGTGCATTTG 59.022 39.130 0.00 0.00 33.69 2.32
979 1000 3.181545 CGAATTTGTTACCGTGCATTTGC 60.182 43.478 0.00 0.00 42.50 3.68
980 1001 1.759994 TTTGTTACCGTGCATTTGCG 58.240 45.000 0.00 0.00 45.83 4.85
986 1007 4.681643 CGTGCATTTGCGGTGCGT 62.682 61.111 0.00 0.00 45.37 5.24
987 1008 3.098958 GTGCATTTGCGGTGCGTG 61.099 61.111 0.00 0.00 45.37 5.34
988 1009 4.998024 TGCATTTGCGGTGCGTGC 62.998 61.111 0.00 6.66 45.37 5.34
997 1018 2.819595 GGTGCGTGCGGATGTGAT 60.820 61.111 0.00 0.00 0.00 3.06
998 1019 2.398554 GGTGCGTGCGGATGTGATT 61.399 57.895 0.00 0.00 0.00 2.57
999 1020 1.501741 GTGCGTGCGGATGTGATTT 59.498 52.632 0.00 0.00 0.00 2.17
1000 1021 0.724549 GTGCGTGCGGATGTGATTTA 59.275 50.000 0.00 0.00 0.00 1.40
1001 1022 1.330521 GTGCGTGCGGATGTGATTTAT 59.669 47.619 0.00 0.00 0.00 1.40
1002 1023 1.330213 TGCGTGCGGATGTGATTTATG 59.670 47.619 0.00 0.00 0.00 1.90
1003 1024 1.921573 GCGTGCGGATGTGATTTATGC 60.922 52.381 0.00 0.00 0.00 3.14
1004 1025 1.334059 CGTGCGGATGTGATTTATGCC 60.334 52.381 0.00 0.00 0.00 4.40
1005 1026 1.675483 GTGCGGATGTGATTTATGCCA 59.325 47.619 0.00 0.00 0.00 4.92
1006 1027 2.294233 GTGCGGATGTGATTTATGCCAT 59.706 45.455 0.00 0.00 0.00 4.40
1007 1028 2.553602 TGCGGATGTGATTTATGCCATC 59.446 45.455 0.00 0.00 34.35 3.51
1008 1029 2.413239 GCGGATGTGATTTATGCCATCG 60.413 50.000 0.00 0.00 35.62 3.84
1009 1030 2.413239 CGGATGTGATTTATGCCATCGC 60.413 50.000 0.00 0.00 35.62 4.58
1025 1046 2.482374 GCATCTGGCGTTGCTGTC 59.518 61.111 5.53 0.00 35.95 3.51
1026 1047 2.780643 CATCTGGCGTTGCTGTCG 59.219 61.111 0.00 0.00 0.00 4.35
1027 1048 2.029288 CATCTGGCGTTGCTGTCGT 61.029 57.895 0.00 0.00 0.00 4.34
1028 1049 2.029288 ATCTGGCGTTGCTGTCGTG 61.029 57.895 0.00 0.00 0.00 4.35
1029 1050 4.374702 CTGGCGTTGCTGTCGTGC 62.375 66.667 0.00 0.00 0.00 5.34
1032 1053 4.374702 GCGTTGCTGTCGTGCCTG 62.375 66.667 0.00 0.00 0.00 4.85
1033 1054 4.374702 CGTTGCTGTCGTGCCTGC 62.375 66.667 0.00 0.00 0.00 4.85
1034 1055 2.974698 GTTGCTGTCGTGCCTGCT 60.975 61.111 0.00 0.00 0.00 4.24
1035 1056 2.974148 TTGCTGTCGTGCCTGCTG 60.974 61.111 0.00 0.00 0.00 4.41
1036 1057 4.994471 TGCTGTCGTGCCTGCTGG 62.994 66.667 5.03 5.03 0.00 4.85
1037 1058 4.996434 GCTGTCGTGCCTGCTGGT 62.996 66.667 11.69 0.00 35.27 4.00
1038 1059 3.046087 CTGTCGTGCCTGCTGGTG 61.046 66.667 11.69 2.17 35.27 4.17
1040 1061 4.996434 GTCGTGCCTGCTGGTGCT 62.996 66.667 11.69 0.00 40.48 4.40
1041 1062 4.994471 TCGTGCCTGCTGGTGCTG 62.994 66.667 11.69 0.00 40.48 4.41
1047 1068 2.046507 CTGCTGGTGCTGGTCCTC 60.047 66.667 0.00 0.00 40.48 3.71
1048 1069 2.527624 TGCTGGTGCTGGTCCTCT 60.528 61.111 0.00 0.00 40.48 3.69
1049 1070 2.267324 GCTGGTGCTGGTCCTCTC 59.733 66.667 0.00 0.00 36.03 3.20
1050 1071 2.985456 CTGGTGCTGGTCCTCTCC 59.015 66.667 0.00 0.00 0.00 3.71
1051 1072 2.607750 TGGTGCTGGTCCTCTCCC 60.608 66.667 0.00 0.00 0.00 4.30
1052 1073 2.284995 GGTGCTGGTCCTCTCCCT 60.285 66.667 0.00 0.00 0.00 4.20
1053 1074 2.363172 GGTGCTGGTCCTCTCCCTC 61.363 68.421 0.00 0.00 0.00 4.30
1054 1075 2.363018 TGCTGGTCCTCTCCCTCG 60.363 66.667 0.00 0.00 0.00 4.63
1055 1076 2.043852 GCTGGTCCTCTCCCTCGA 60.044 66.667 0.00 0.00 0.00 4.04
1056 1077 2.419739 GCTGGTCCTCTCCCTCGAC 61.420 68.421 0.00 0.00 0.00 4.20
1057 1078 1.000771 CTGGTCCTCTCCCTCGACA 60.001 63.158 0.00 0.00 0.00 4.35
1058 1079 0.612174 CTGGTCCTCTCCCTCGACAA 60.612 60.000 0.00 0.00 0.00 3.18
1059 1080 0.612174 TGGTCCTCTCCCTCGACAAG 60.612 60.000 0.00 0.00 0.00 3.16
1060 1081 0.612453 GGTCCTCTCCCTCGACAAGT 60.612 60.000 0.00 0.00 0.00 3.16
1061 1082 1.258676 GTCCTCTCCCTCGACAAGTT 58.741 55.000 0.00 0.00 0.00 2.66
1062 1083 1.202817 GTCCTCTCCCTCGACAAGTTC 59.797 57.143 0.00 0.00 0.00 3.01
1069 1090 0.533032 CCTCGACAAGTTCCTCCTCC 59.467 60.000 0.00 0.00 0.00 4.30
1090 1111 2.914777 CTACCTCAGGAAGCGCTGGC 62.915 65.000 12.58 6.29 40.37 4.85
1139 1160 3.083349 CAGGATCCCGACCAGCCA 61.083 66.667 8.55 0.00 0.00 4.75
1188 1209 3.695606 GCCCAGTGGAGCGAGACA 61.696 66.667 11.95 0.00 0.00 3.41
1235 1256 0.038310 GGGTTTCCTCCCCTCTTGTG 59.962 60.000 0.00 0.00 41.54 3.33
1243 1264 3.264450 TCCTCCCCTCTTGTGAAAGAATC 59.736 47.826 0.00 0.00 0.00 2.52
1255 1276 8.796475 TCTTGTGAAAGAATCCTCTTATTTTGG 58.204 33.333 0.00 0.00 41.23 3.28
1289 1310 3.031013 CTCTTGTTTGGTGGGTTTCCTT 58.969 45.455 0.00 0.00 0.00 3.36
1290 1311 3.028130 TCTTGTTTGGTGGGTTTCCTTC 58.972 45.455 0.00 0.00 0.00 3.46
1291 1312 1.783071 TGTTTGGTGGGTTTCCTTCC 58.217 50.000 0.00 0.00 0.00 3.46
1292 1313 1.045407 GTTTGGTGGGTTTCCTTCCC 58.955 55.000 0.00 0.00 44.81 3.97
1316 1337 5.066505 CCCACTCTACTTGTGAATTATTGCC 59.933 44.000 0.00 0.00 37.60 4.52
1403 1424 4.963428 GGCGAGGCCGTAATCCCG 62.963 72.222 0.00 0.00 39.62 5.14
1532 1554 9.110617 CAACATGCATATGAGAATCGAATTTAC 57.889 33.333 6.97 0.00 38.61 2.01
1579 1705 5.772672 AGACGAGTCTAATATCTTGGCTCAT 59.227 40.000 3.61 0.00 38.35 2.90
1581 1707 6.451393 ACGAGTCTAATATCTTGGCTCATTC 58.549 40.000 0.00 0.00 0.00 2.67
1582 1708 6.266558 ACGAGTCTAATATCTTGGCTCATTCT 59.733 38.462 0.00 0.00 0.00 2.40
1659 1802 0.976641 ATCTCTTCTTGGCGTGGTGA 59.023 50.000 0.00 0.00 0.00 4.02
1698 1841 1.404583 GCTTCCGTTCGGTTAGCCTTA 60.405 52.381 20.83 0.00 32.31 2.69
1718 1861 6.732154 CCTTACAATTCTCCATGTATGCTTG 58.268 40.000 0.00 0.00 32.46 4.01
1721 1864 4.333649 ACAATTCTCCATGTATGCTTGACG 59.666 41.667 0.00 0.00 0.00 4.35
1736 1879 0.731514 TGACGAGGACGAATTCGCAC 60.732 55.000 27.03 19.29 44.43 5.34
1756 1899 1.201877 CGCGCACACCTAACAATGTAC 60.202 52.381 8.75 0.00 0.00 2.90
1861 2005 3.243401 GCCAAACAAATGGTCTCGTTCTT 60.243 43.478 0.00 0.00 42.75 2.52
1877 2021 4.020218 TCGTTCTTTCCAGAATCCACTCAT 60.020 41.667 0.00 0.00 41.26 2.90
1880 2024 6.294176 CGTTCTTTCCAGAATCCACTCATTTT 60.294 38.462 0.00 0.00 41.26 1.82
1881 2025 7.436933 GTTCTTTCCAGAATCCACTCATTTTT 58.563 34.615 0.00 0.00 41.26 1.94
1909 2053 7.887996 TTTAAATCCTGCTTTGCATAACAAG 57.112 32.000 0.00 0.00 40.06 3.16
1928 2072 3.914426 AGCACTCCCTATTAGTTGTGG 57.086 47.619 0.00 0.00 0.00 4.17
1931 2075 3.535561 CACTCCCTATTAGTTGTGGCTG 58.464 50.000 0.00 0.00 0.00 4.85
1967 2111 3.194005 TGTTTATGGATCGGAGGAAGC 57.806 47.619 0.00 0.00 0.00 3.86
1972 2116 1.112113 TGGATCGGAGGAAGCAGTAC 58.888 55.000 0.00 0.00 0.00 2.73
2004 2148 2.543777 TTCTTTCCAGAACCCACTCG 57.456 50.000 0.00 0.00 33.80 4.18
2118 2275 1.257750 TGGGTCTCCACCATCTGTCG 61.258 60.000 0.00 0.00 45.94 4.35
2127 2284 2.598589 CACCATCTGTCGGCAATTTTG 58.401 47.619 0.00 0.00 0.00 2.44
2316 2480 3.674138 CGAAGTTTCCAATCAGGGCATTG 60.674 47.826 0.00 0.00 38.24 2.82
2317 2481 2.893424 AGTTTCCAATCAGGGCATTGT 58.107 42.857 0.00 0.00 38.24 2.71
2450 2631 9.890629 ATCTGATACAAAACAAATACTCTAGCA 57.109 29.630 0.00 0.00 0.00 3.49
2463 2644 7.617041 AATACTCTAGCAAACATGTCTTTCC 57.383 36.000 0.00 0.00 0.00 3.13
2502 2683 4.050553 CCGCACACACTTCAATTTTGAAT 58.949 39.130 6.21 0.00 45.26 2.57
2592 2773 5.865013 TGTATTGAAAGCACATGCAATTCTG 59.135 36.000 17.73 0.00 45.16 3.02
2613 2794 6.615088 TCTGAATTCTGCTAAACATGCTTTC 58.385 36.000 7.05 0.00 0.00 2.62
2662 2843 3.817709 ATCTGCAAGCTAACCTCTCTC 57.182 47.619 0.00 0.00 0.00 3.20
2743 2924 7.116519 GGCTAGAGTAATTTTAATGTCTAGGCG 59.883 40.741 17.74 0.00 44.92 5.52
2769 2950 2.932614 CACCATTCTTAGAGTTGAGGCG 59.067 50.000 0.00 0.00 0.00 5.52
2908 3089 2.670934 AAAGGTGCAGAGCTGGCG 60.671 61.111 0.00 0.00 0.00 5.69
3179 3361 9.515226 TTATGACTCCTTTTGCAGTTTATAACT 57.485 29.630 0.00 0.00 44.06 2.24
3263 3446 5.490159 CATAAGGGGAAATTTGTGCAATGT 58.510 37.500 0.00 0.00 0.00 2.71
3264 3447 3.405823 AGGGGAAATTTGTGCAATGTG 57.594 42.857 0.00 0.00 0.00 3.21
3279 3462 5.870978 GTGCAATGTGGCAATCTTCTTAAAT 59.129 36.000 0.00 0.00 46.93 1.40
3312 3495 5.294734 ACAAAGATTGTTTCCATTGCCTT 57.705 34.783 0.00 0.00 42.22 4.35
3579 4081 7.148623 CCCTTCTATTTTACTCTTCACGTGAAC 60.149 40.741 26.53 0.00 0.00 3.18
3703 4215 6.847400 TCCATGTTAATAAAATCCACGTGTG 58.153 36.000 15.65 6.24 0.00 3.82
3739 4251 2.173356 CCTCTCATGGGGATGCACTAAA 59.827 50.000 0.00 0.00 0.00 1.85
3770 4282 5.121298 CACTCAGTTGAAGTCATGGTATGTG 59.879 44.000 0.00 0.00 0.00 3.21
3779 4291 3.050619 GTCATGGTATGTGTAGTAGCGC 58.949 50.000 0.00 0.00 0.00 5.92
3837 4349 4.902443 TGTTTAAGTGGCACAATCGAAA 57.098 36.364 21.41 9.05 44.16 3.46
4188 5321 1.073199 AACCTTGGAAGAGTGGCGG 59.927 57.895 0.00 0.00 0.00 6.13
4261 5414 0.042448 GTGCAACGGAGTCGACAAAC 60.042 55.000 19.50 8.52 45.00 2.93
4376 5541 9.787435 GTGTCATGTGGTTTCCCTTTATATATA 57.213 33.333 0.00 0.00 0.00 0.86
4466 5637 6.201517 CAGGTGCTCGGATTATACAAATTTG 58.798 40.000 16.67 16.67 0.00 2.32
4467 5638 6.038161 CAGGTGCTCGGATTATACAAATTTGA 59.962 38.462 24.64 8.78 0.00 2.69
4468 5639 6.772716 AGGTGCTCGGATTATACAAATTTGAT 59.227 34.615 24.64 14.82 0.00 2.57
4469 5640 6.857964 GGTGCTCGGATTATACAAATTTGATG 59.142 38.462 24.64 0.00 0.00 3.07
4542 5714 2.892305 CGAAGGAAGGCTGCTATCG 58.108 57.895 0.00 6.16 0.00 2.92
4549 5721 3.418068 GGCTGCTATCGCATCGGC 61.418 66.667 0.00 0.00 46.74 5.54
4566 5738 0.881796 GGCCTTCTTCCTTTTCGGTG 59.118 55.000 0.00 0.00 0.00 4.94
4597 5769 5.773239 AAAGCAAATCGAATGCAAATCAG 57.227 34.783 23.35 0.00 46.22 2.90
4650 5822 0.383590 ATCAGATCTCTGCCACGTCG 59.616 55.000 2.21 0.00 43.46 5.12
4651 5823 0.960861 TCAGATCTCTGCCACGTCGT 60.961 55.000 2.21 0.00 43.46 4.34
4652 5824 0.109086 CAGATCTCTGCCACGTCGTT 60.109 55.000 0.00 0.00 37.15 3.85
4653 5825 0.603569 AGATCTCTGCCACGTCGTTT 59.396 50.000 0.00 0.00 0.00 3.60
4654 5826 1.000955 AGATCTCTGCCACGTCGTTTT 59.999 47.619 0.00 0.00 0.00 2.43
4655 5827 1.798813 GATCTCTGCCACGTCGTTTTT 59.201 47.619 0.00 0.00 0.00 1.94
4679 5851 5.873179 TTAACATTAGTACAGGCACAAGC 57.127 39.130 0.00 0.00 41.10 4.01
4680 5852 2.346803 ACATTAGTACAGGCACAAGCG 58.653 47.619 0.00 0.00 43.41 4.68
4681 5853 1.062587 CATTAGTACAGGCACAAGCGC 59.937 52.381 0.00 0.00 43.41 5.92
4682 5854 0.320374 TTAGTACAGGCACAAGCGCT 59.680 50.000 2.64 2.64 43.41 5.92
4683 5855 0.108804 TAGTACAGGCACAAGCGCTC 60.109 55.000 12.06 0.00 43.41 5.03
4684 5856 1.667830 GTACAGGCACAAGCGCTCA 60.668 57.895 12.06 0.00 43.41 4.26
4685 5857 1.021390 GTACAGGCACAAGCGCTCAT 61.021 55.000 12.06 0.00 43.41 2.90
4686 5858 0.534873 TACAGGCACAAGCGCTCATA 59.465 50.000 12.06 0.00 43.41 2.15
4687 5859 0.107508 ACAGGCACAAGCGCTCATAT 60.108 50.000 12.06 0.00 43.41 1.78
4688 5860 1.138859 ACAGGCACAAGCGCTCATATA 59.861 47.619 12.06 0.00 43.41 0.86
4689 5861 1.528586 CAGGCACAAGCGCTCATATAC 59.471 52.381 12.06 0.00 43.41 1.47
4690 5862 0.508641 GGCACAAGCGCTCATATACG 59.491 55.000 12.06 0.00 43.41 3.06
4696 5868 4.427793 CGCTCATATACGCGCGTA 57.572 55.556 40.65 40.65 43.01 4.42
4697 5869 2.926074 CGCTCATATACGCGCGTAT 58.074 52.632 44.83 44.83 43.01 3.06
4698 5870 2.081336 CGCTCATATACGCGCGTATA 57.919 50.000 45.73 45.73 44.52 1.47
4699 5871 1.766301 CGCTCATATACGCGCGTATAC 59.234 52.381 46.37 35.69 43.62 1.47
4700 5872 2.777494 GCTCATATACGCGCGTATACA 58.223 47.619 46.37 36.73 43.62 2.29
4701 5873 2.525096 GCTCATATACGCGCGTATACAC 59.475 50.000 46.37 34.59 43.62 2.90
4702 5874 3.727079 GCTCATATACGCGCGTATACACT 60.727 47.826 46.37 34.61 43.62 3.55
4703 5875 3.994789 TCATATACGCGCGTATACACTC 58.005 45.455 46.37 2.01 43.62 3.51
4704 5876 3.432933 TCATATACGCGCGTATACACTCA 59.567 43.478 46.37 33.77 43.62 3.41
4705 5877 2.028287 ATACGCGCGTATACACTCAC 57.972 50.000 44.19 0.00 39.29 3.51
4706 5878 0.027979 TACGCGCGTATACACTCACC 59.972 55.000 36.55 0.00 0.00 4.02
4707 5879 1.942712 CGCGCGTATACACTCACCC 60.943 63.158 24.19 0.00 0.00 4.61
4708 5880 1.590792 GCGCGTATACACTCACCCC 60.591 63.158 8.43 0.00 0.00 4.95
4709 5881 2.012902 GCGCGTATACACTCACCCCT 62.013 60.000 8.43 0.00 0.00 4.79
4710 5882 1.311859 CGCGTATACACTCACCCCTA 58.688 55.000 0.00 0.00 0.00 3.53
4711 5883 1.884579 CGCGTATACACTCACCCCTAT 59.115 52.381 0.00 0.00 0.00 2.57
4712 5884 2.351447 CGCGTATACACTCACCCCTATG 60.351 54.545 0.00 0.00 0.00 2.23
4713 5885 2.889045 GCGTATACACTCACCCCTATGA 59.111 50.000 3.32 0.00 0.00 2.15
4714 5886 3.319972 GCGTATACACTCACCCCTATGAA 59.680 47.826 3.32 0.00 0.00 2.57
4715 5887 4.795308 GCGTATACACTCACCCCTATGAAC 60.795 50.000 3.32 0.00 0.00 3.18
4716 5888 4.556104 CGTATACACTCACCCCTATGAACG 60.556 50.000 3.32 0.00 0.00 3.95
4717 5889 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
4718 5890 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
4719 5891 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
4720 5892 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
4721 5893 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
4722 5894 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
4723 5895 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
4724 5896 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
4725 5897 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
4726 5898 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
4727 5899 0.721154 CTATGAACGCACACACGCAT 59.279 50.000 0.00 0.00 36.19 4.73
4728 5900 1.923864 CTATGAACGCACACACGCATA 59.076 47.619 0.00 0.00 36.19 3.14
4729 5901 0.442310 ATGAACGCACACACGCATAC 59.558 50.000 0.00 0.00 36.19 2.39
4730 5902 1.131826 GAACGCACACACGCATACC 59.868 57.895 0.00 0.00 36.19 2.73
4731 5903 2.235536 GAACGCACACACGCATACCC 62.236 60.000 0.00 0.00 36.19 3.69
4732 5904 2.434185 CGCACACACGCATACCCT 60.434 61.111 0.00 0.00 0.00 4.34
4733 5905 1.153726 CGCACACACGCATACCCTA 60.154 57.895 0.00 0.00 0.00 3.53
4734 5906 0.529773 CGCACACACGCATACCCTAT 60.530 55.000 0.00 0.00 0.00 2.57
4735 5907 1.217882 GCACACACGCATACCCTATC 58.782 55.000 0.00 0.00 0.00 2.08
4736 5908 1.865865 CACACACGCATACCCTATCC 58.134 55.000 0.00 0.00 0.00 2.59
4737 5909 0.756903 ACACACGCATACCCTATCCC 59.243 55.000 0.00 0.00 0.00 3.85
4738 5910 1.048601 CACACGCATACCCTATCCCT 58.951 55.000 0.00 0.00 0.00 4.20
4739 5911 2.244695 CACACGCATACCCTATCCCTA 58.755 52.381 0.00 0.00 0.00 3.53
4740 5912 2.832129 CACACGCATACCCTATCCCTAT 59.168 50.000 0.00 0.00 0.00 2.57
4741 5913 2.832129 ACACGCATACCCTATCCCTATG 59.168 50.000 0.00 0.00 0.00 2.23
4742 5914 2.168521 CACGCATACCCTATCCCTATGG 59.831 54.545 0.00 0.00 0.00 2.74
4754 5926 3.951563 TCCCTATGGATTTGAACCCTG 57.048 47.619 0.00 0.00 35.03 4.45
4755 5927 2.513738 TCCCTATGGATTTGAACCCTGG 59.486 50.000 0.00 0.00 35.03 4.45
4756 5928 2.244769 CCCTATGGATTTGAACCCTGGT 59.755 50.000 0.00 0.00 0.00 4.00
4757 5929 3.290710 CCTATGGATTTGAACCCTGGTG 58.709 50.000 0.00 0.00 0.00 4.17
4758 5930 2.236489 ATGGATTTGAACCCTGGTGG 57.764 50.000 0.00 0.00 41.37 4.61
4768 5940 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
4769 5941 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
4785 5957 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
4786 5958 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
4787 5959 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
4788 5960 2.632537 ACCACAGTCCCTCTAACCATT 58.367 47.619 0.00 0.00 0.00 3.16
4789 5961 2.572104 ACCACAGTCCCTCTAACCATTC 59.428 50.000 0.00 0.00 0.00 2.67
4790 5962 2.571653 CCACAGTCCCTCTAACCATTCA 59.428 50.000 0.00 0.00 0.00 2.57
4791 5963 3.009033 CCACAGTCCCTCTAACCATTCAA 59.991 47.826 0.00 0.00 0.00 2.69
4792 5964 4.003648 CACAGTCCCTCTAACCATTCAAC 58.996 47.826 0.00 0.00 0.00 3.18
4793 5965 3.009143 ACAGTCCCTCTAACCATTCAACC 59.991 47.826 0.00 0.00 0.00 3.77
4794 5966 3.009033 CAGTCCCTCTAACCATTCAACCA 59.991 47.826 0.00 0.00 0.00 3.67
4795 5967 3.009143 AGTCCCTCTAACCATTCAACCAC 59.991 47.826 0.00 0.00 0.00 4.16
4796 5968 2.983192 TCCCTCTAACCATTCAACCACA 59.017 45.455 0.00 0.00 0.00 4.17
4797 5969 3.009033 TCCCTCTAACCATTCAACCACAG 59.991 47.826 0.00 0.00 0.00 3.66
4798 5970 3.347216 CCTCTAACCATTCAACCACAGG 58.653 50.000 0.00 0.00 0.00 4.00
4799 5971 3.244911 CCTCTAACCATTCAACCACAGGT 60.245 47.826 0.00 0.00 37.65 4.00
4809 5981 2.983592 CCACAGGTTGGTTCGCCC 60.984 66.667 0.00 0.00 41.10 6.13
4810 5982 2.983592 CACAGGTTGGTTCGCCCC 60.984 66.667 0.00 0.00 36.08 5.80
4811 5983 3.494254 ACAGGTTGGTTCGCCCCA 61.494 61.111 0.00 0.00 36.08 4.96
4812 5984 2.983592 CAGGTTGGTTCGCCCCAC 60.984 66.667 0.00 0.00 33.14 4.61
4813 5985 4.636435 AGGTTGGTTCGCCCCACG 62.636 66.667 0.00 0.00 45.62 4.94
4814 5986 4.941309 GGTTGGTTCGCCCCACGT 62.941 66.667 0.00 0.00 44.19 4.49
4815 5987 3.351416 GTTGGTTCGCCCCACGTC 61.351 66.667 0.00 0.00 44.19 4.34
4816 5988 4.973055 TTGGTTCGCCCCACGTCG 62.973 66.667 0.00 0.00 44.19 5.12
4849 6021 4.608948 AACGTGATCTTGGAGAAGTCTT 57.391 40.909 0.00 0.00 0.00 3.01
4889 6062 6.703607 CCTTGCTTGTCTATGTACTAGGAATG 59.296 42.308 0.00 0.00 33.64 2.67
4892 6065 6.183360 TGCTTGTCTATGTACTAGGAATGACC 60.183 42.308 0.00 0.00 39.35 4.02
4898 6071 8.475639 GTCTATGTACTAGGAATGACCAGAAAA 58.524 37.037 0.00 0.00 42.04 2.29
4911 6084 4.276678 TGACCAGAAAATTTCAGCTCTGTG 59.723 41.667 8.55 9.28 34.70 3.66
4912 6085 3.005155 ACCAGAAAATTTCAGCTCTGTGC 59.995 43.478 8.55 0.00 43.29 4.57
4913 6086 3.572584 CAGAAAATTTCAGCTCTGTGCC 58.427 45.455 8.55 0.00 44.23 5.01
4914 6087 3.005050 CAGAAAATTTCAGCTCTGTGCCA 59.995 43.478 8.55 0.00 44.23 4.92
4915 6088 3.830755 AGAAAATTTCAGCTCTGTGCCAT 59.169 39.130 8.55 0.00 44.23 4.40
4916 6089 5.012239 AGAAAATTTCAGCTCTGTGCCATA 58.988 37.500 8.55 0.00 44.23 2.74
4917 6090 4.978083 AAATTTCAGCTCTGTGCCATAG 57.022 40.909 0.00 0.00 44.23 2.23
4918 6091 3.641434 ATTTCAGCTCTGTGCCATAGT 57.359 42.857 0.00 0.00 44.23 2.12
4919 6092 2.391616 TTCAGCTCTGTGCCATAGTG 57.608 50.000 0.00 0.00 44.23 2.74
4920 6093 1.269958 TCAGCTCTGTGCCATAGTGT 58.730 50.000 0.00 0.00 44.23 3.55
4921 6094 1.625315 TCAGCTCTGTGCCATAGTGTT 59.375 47.619 0.00 0.00 44.23 3.32
4922 6095 2.038952 TCAGCTCTGTGCCATAGTGTTT 59.961 45.455 0.00 0.00 44.23 2.83
4923 6096 2.816087 CAGCTCTGTGCCATAGTGTTTT 59.184 45.455 0.00 0.00 44.23 2.43
4924 6097 3.254166 CAGCTCTGTGCCATAGTGTTTTT 59.746 43.478 0.00 0.00 44.23 1.94
4959 6132 4.776795 TTTCGAAAAATGGAGGCTTACC 57.223 40.909 8.44 0.00 0.00 2.85
4960 6133 2.718563 TCGAAAAATGGAGGCTTACCC 58.281 47.619 0.00 0.00 36.11 3.69
4961 6134 1.749063 CGAAAAATGGAGGCTTACCCC 59.251 52.381 0.00 0.00 36.11 4.95
4962 6135 2.108168 GAAAAATGGAGGCTTACCCCC 58.892 52.381 0.00 0.00 36.11 5.40
4963 6136 0.033503 AAAATGGAGGCTTACCCCCG 60.034 55.000 0.00 0.00 36.11 5.73
4964 6137 1.933307 AAATGGAGGCTTACCCCCGG 61.933 60.000 0.00 0.00 36.11 5.73
4970 6143 4.176752 GCTTACCCCCGGCCTCTG 62.177 72.222 0.00 0.00 0.00 3.35
4971 6144 4.176752 CTTACCCCCGGCCTCTGC 62.177 72.222 0.00 0.00 0.00 4.26
4973 6146 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
4976 6149 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
4977 6150 2.519622 CCCCGGCCTCTGCATCATA 61.520 63.158 0.00 0.00 40.13 2.15
4978 6151 1.451504 CCCGGCCTCTGCATCATAA 59.548 57.895 0.00 0.00 40.13 1.90
4979 6152 0.037303 CCCGGCCTCTGCATCATAAT 59.963 55.000 0.00 0.00 40.13 1.28
4980 6153 1.162698 CCGGCCTCTGCATCATAATG 58.837 55.000 0.00 0.00 40.13 1.90
4981 6154 1.271001 CCGGCCTCTGCATCATAATGA 60.271 52.381 0.00 0.00 40.13 2.57
4982 6155 2.617276 CCGGCCTCTGCATCATAATGAT 60.617 50.000 0.00 0.00 37.65 2.45
4992 6165 3.511699 CATCATAATGATGCATGCAGCC 58.488 45.455 31.30 22.02 46.37 4.85
4993 6166 2.588620 TCATAATGATGCATGCAGCCA 58.411 42.857 31.30 26.44 44.83 4.75
4994 6167 3.161866 TCATAATGATGCATGCAGCCAT 58.838 40.909 31.30 27.32 44.83 4.40
4995 6168 4.337145 TCATAATGATGCATGCAGCCATA 58.663 39.130 31.30 23.30 44.83 2.74
4996 6169 4.953579 TCATAATGATGCATGCAGCCATAT 59.046 37.500 31.30 24.33 44.83 1.78
4997 6170 5.420739 TCATAATGATGCATGCAGCCATATT 59.579 36.000 31.30 24.72 44.83 1.28
4998 6171 6.603997 TCATAATGATGCATGCAGCCATATTA 59.396 34.615 31.30 25.86 44.83 0.98
4999 6172 5.932619 AATGATGCATGCAGCCATATTAT 57.067 34.783 31.30 15.24 44.83 1.28
5000 6173 5.932619 ATGATGCATGCAGCCATATTATT 57.067 34.783 31.30 8.21 44.83 1.40
5001 6174 7.412853 AATGATGCATGCAGCCATATTATTA 57.587 32.000 31.30 11.24 44.83 0.98
5002 6175 6.837471 TGATGCATGCAGCCATATTATTAA 57.163 33.333 31.30 7.33 44.83 1.40
5003 6176 7.229581 TGATGCATGCAGCCATATTATTAAA 57.770 32.000 31.30 6.79 44.83 1.52
5004 6177 7.668492 TGATGCATGCAGCCATATTATTAAAA 58.332 30.769 31.30 6.57 44.83 1.52
5005 6178 8.315482 TGATGCATGCAGCCATATTATTAAAAT 58.685 29.630 31.30 5.81 44.83 1.82
5006 6179 7.892778 TGCATGCAGCCATATTATTAAAATG 57.107 32.000 18.46 0.00 44.83 2.32
5007 6180 7.443477 TGCATGCAGCCATATTATTAAAATGT 58.557 30.769 18.46 0.00 44.83 2.71
5008 6181 7.599621 TGCATGCAGCCATATTATTAAAATGTC 59.400 33.333 18.46 0.00 44.83 3.06
5009 6182 7.599621 GCATGCAGCCATATTATTAAAATGTCA 59.400 33.333 14.21 0.00 37.23 3.58
5010 6183 8.918658 CATGCAGCCATATTATTAAAATGTCAC 58.081 33.333 0.00 0.00 0.00 3.67
5011 6184 8.005192 TGCAGCCATATTATTAAAATGTCACA 57.995 30.769 0.00 0.00 0.00 3.58
5012 6185 8.473219 TGCAGCCATATTATTAAAATGTCACAA 58.527 29.630 0.00 0.00 0.00 3.33
5013 6186 9.311916 GCAGCCATATTATTAAAATGTCACAAA 57.688 29.630 0.00 0.00 0.00 2.83
5026 6199 8.856490 AAAATGTCACAAAGTATCACAAAGTC 57.144 30.769 0.00 0.00 0.00 3.01
5027 6200 5.651172 TGTCACAAAGTATCACAAAGTCG 57.349 39.130 0.00 0.00 0.00 4.18
5028 6201 5.113383 TGTCACAAAGTATCACAAAGTCGT 58.887 37.500 0.00 0.00 0.00 4.34
5029 6202 5.233476 TGTCACAAAGTATCACAAAGTCGTC 59.767 40.000 0.00 0.00 0.00 4.20
5030 6203 5.233476 GTCACAAAGTATCACAAAGTCGTCA 59.767 40.000 0.00 0.00 0.00 4.35
5031 6204 5.813157 TCACAAAGTATCACAAAGTCGTCAA 59.187 36.000 0.00 0.00 0.00 3.18
5032 6205 6.314152 TCACAAAGTATCACAAAGTCGTCAAA 59.686 34.615 0.00 0.00 0.00 2.69
5033 6206 6.628856 CACAAAGTATCACAAAGTCGTCAAAG 59.371 38.462 0.00 0.00 0.00 2.77
5034 6207 6.315393 ACAAAGTATCACAAAGTCGTCAAAGT 59.685 34.615 0.00 0.00 0.00 2.66
5035 6208 7.493320 ACAAAGTATCACAAAGTCGTCAAAGTA 59.507 33.333 0.00 0.00 0.00 2.24
5036 6209 8.495949 CAAAGTATCACAAAGTCGTCAAAGTAT 58.504 33.333 0.00 0.00 0.00 2.12
5037 6210 8.603242 AAGTATCACAAAGTCGTCAAAGTATT 57.397 30.769 0.00 0.00 0.00 1.89
5038 6211 9.701098 AAGTATCACAAAGTCGTCAAAGTATTA 57.299 29.630 0.00 0.00 0.00 0.98
5039 6212 9.136952 AGTATCACAAAGTCGTCAAAGTATTAC 57.863 33.333 0.00 0.00 0.00 1.89
5040 6213 7.956420 ATCACAAAGTCGTCAAAGTATTACA 57.044 32.000 0.00 0.00 0.00 2.41
5041 6214 7.773864 TCACAAAGTCGTCAAAGTATTACAA 57.226 32.000 0.00 0.00 0.00 2.41
5042 6215 7.623770 TCACAAAGTCGTCAAAGTATTACAAC 58.376 34.615 0.00 0.00 0.00 3.32
5043 6216 7.493320 TCACAAAGTCGTCAAAGTATTACAACT 59.507 33.333 0.00 0.00 0.00 3.16
5044 6217 8.120465 CACAAAGTCGTCAAAGTATTACAACTT 58.880 33.333 0.00 0.00 41.46 2.66
5046 6219 9.155053 CAAAGTCGTCAAAGTATTACAACTTTC 57.845 33.333 0.00 0.00 45.59 2.62
5047 6220 8.428186 AAGTCGTCAAAGTATTACAACTTTCA 57.572 30.769 0.00 0.00 45.59 2.69
5048 6221 8.428186 AGTCGTCAAAGTATTACAACTTTCAA 57.572 30.769 0.00 0.00 45.59 2.69
5049 6222 8.548721 AGTCGTCAAAGTATTACAACTTTCAAG 58.451 33.333 0.00 0.00 45.59 3.02
5050 6223 8.333186 GTCGTCAAAGTATTACAACTTTCAAGT 58.667 33.333 0.00 0.00 45.59 3.16
5051 6224 8.332464 TCGTCAAAGTATTACAACTTTCAAGTG 58.668 33.333 0.00 0.00 45.59 3.16
5052 6225 7.586300 CGTCAAAGTATTACAACTTTCAAGTGG 59.414 37.037 0.00 0.00 45.59 4.00
5053 6226 8.617809 GTCAAAGTATTACAACTTTCAAGTGGA 58.382 33.333 0.81 0.00 45.59 4.02
5054 6227 8.836413 TCAAAGTATTACAACTTTCAAGTGGAG 58.164 33.333 0.81 0.00 45.59 3.86
5055 6228 6.803154 AGTATTACAACTTTCAAGTGGAGC 57.197 37.500 0.81 0.00 39.66 4.70
5056 6229 4.749245 ATTACAACTTTCAAGTGGAGCG 57.251 40.909 0.81 0.00 39.66 5.03
5057 6230 2.325583 ACAACTTTCAAGTGGAGCGA 57.674 45.000 0.81 0.00 39.66 4.93
5058 6231 2.639065 ACAACTTTCAAGTGGAGCGAA 58.361 42.857 0.81 0.00 39.66 4.70
5059 6232 3.013921 ACAACTTTCAAGTGGAGCGAAA 58.986 40.909 0.81 0.00 39.66 3.46
5060 6233 3.442273 ACAACTTTCAAGTGGAGCGAAAA 59.558 39.130 0.81 0.00 39.66 2.29
5061 6234 4.082463 ACAACTTTCAAGTGGAGCGAAAAA 60.082 37.500 0.81 0.00 39.66 1.94
5085 6258 9.830294 AAAATAAAAATAAAGCAAAGCTCATGC 57.170 25.926 14.80 14.80 38.25 4.06
5194 6369 1.828660 ATGGGAGGAGCGTCCGTAG 60.829 63.158 3.41 0.00 42.75 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.328382 TGGTGTTTAGTTATCGCAGCT 57.672 42.857 0.00 0.00 0.00 4.24
48 61 4.220382 CAGGGGTATGTTTTCAGCAAATCA 59.780 41.667 0.00 0.00 0.00 2.57
58 71 8.655901 ACACAAAATTTATCAGGGGTATGTTTT 58.344 29.630 0.00 0.00 0.00 2.43
108 121 1.485066 AGGTAACCTATCAAGCCCGTG 59.515 52.381 0.00 0.00 28.47 4.94
154 167 5.854431 TGTTTTGAACAACTTTTTCCTGC 57.146 34.783 0.00 0.00 38.72 4.85
156 169 6.070251 AGGGATGTTTTGAACAACTTTTTCCT 60.070 34.615 0.00 0.00 45.86 3.36
348 361 9.114952 TGACACTAAACATTATGTGACTTTTCA 57.885 29.630 0.00 0.00 34.81 2.69
350 363 9.897744 CATGACACTAAACATTATGTGACTTTT 57.102 29.630 0.00 0.00 34.81 2.27
443 456 1.534163 GGGTGTGTTTCGGTAGCTTTC 59.466 52.381 0.00 0.00 0.00 2.62
494 507 3.119352 AGTTACCGGGTCTACAATTCGTC 60.119 47.826 6.32 0.00 0.00 4.20
500 513 3.167485 ACATGAGTTACCGGGTCTACAA 58.833 45.455 6.32 0.00 0.00 2.41
579 593 8.845413 AAAATACCGTGGTACTTACACATAAA 57.155 30.769 0.00 0.00 38.74 1.40
640 654 5.836024 ACATCCCTTCAAAGTTACCACTA 57.164 39.130 0.00 0.00 30.68 2.74
667 681 5.304614 ACGTACCAGGTATCTATGCTTCAAT 59.695 40.000 1.54 0.00 0.00 2.57
726 740 3.819564 TCGTATGCAAGTTATCAGGCT 57.180 42.857 0.00 0.00 0.00 4.58
824 838 0.598065 GCTTTTCCCGCACATCTTGT 59.402 50.000 0.00 0.00 0.00 3.16
932 953 8.198816 CGTCTTTTAATTTAAGCAAAACTGTCG 58.801 33.333 0.00 0.00 0.00 4.35
947 968 7.113825 GCACGGTAACAAATTCGTCTTTTAATT 59.886 33.333 0.00 0.00 33.31 1.40
950 971 5.007430 TGCACGGTAACAAATTCGTCTTTTA 59.993 36.000 0.00 0.00 33.31 1.52
951 972 4.201930 TGCACGGTAACAAATTCGTCTTTT 60.202 37.500 0.00 0.00 33.31 2.27
952 973 3.312973 TGCACGGTAACAAATTCGTCTTT 59.687 39.130 0.00 0.00 33.31 2.52
953 974 2.873472 TGCACGGTAACAAATTCGTCTT 59.127 40.909 0.00 0.00 33.31 3.01
954 975 2.485903 TGCACGGTAACAAATTCGTCT 58.514 42.857 0.00 0.00 33.31 4.18
955 976 2.953640 TGCACGGTAACAAATTCGTC 57.046 45.000 0.00 0.00 33.31 4.20
956 977 3.907894 AATGCACGGTAACAAATTCGT 57.092 38.095 0.00 0.00 36.19 3.85
957 978 3.181545 GCAAATGCACGGTAACAAATTCG 60.182 43.478 0.00 0.00 41.59 3.34
958 979 3.181545 CGCAAATGCACGGTAACAAATTC 60.182 43.478 6.18 0.00 42.21 2.17
959 980 2.728839 CGCAAATGCACGGTAACAAATT 59.271 40.909 6.18 0.00 42.21 1.82
960 981 2.323959 CGCAAATGCACGGTAACAAAT 58.676 42.857 6.18 0.00 42.21 2.32
961 982 1.600663 CCGCAAATGCACGGTAACAAA 60.601 47.619 6.18 0.00 44.46 2.83
962 983 0.039978 CCGCAAATGCACGGTAACAA 60.040 50.000 6.18 0.00 44.46 2.83
963 984 1.576920 CCGCAAATGCACGGTAACA 59.423 52.632 6.18 0.00 44.46 2.41
964 985 4.450955 CCGCAAATGCACGGTAAC 57.549 55.556 6.18 0.00 44.46 2.50
969 990 4.681643 ACGCACCGCAAATGCACG 62.682 61.111 6.18 5.97 43.57 5.34
970 991 3.098958 CACGCACCGCAAATGCAC 61.099 61.111 6.18 0.00 43.57 4.57
971 992 4.998024 GCACGCACCGCAAATGCA 62.998 61.111 6.18 0.00 43.57 3.96
980 1001 1.922135 AAATCACATCCGCACGCACC 61.922 55.000 0.00 0.00 0.00 5.01
981 1002 0.724549 TAAATCACATCCGCACGCAC 59.275 50.000 0.00 0.00 0.00 5.34
982 1003 1.330213 CATAAATCACATCCGCACGCA 59.670 47.619 0.00 0.00 0.00 5.24
983 1004 1.921573 GCATAAATCACATCCGCACGC 60.922 52.381 0.00 0.00 0.00 5.34
984 1005 1.334059 GGCATAAATCACATCCGCACG 60.334 52.381 0.00 0.00 0.00 5.34
985 1006 1.675483 TGGCATAAATCACATCCGCAC 59.325 47.619 0.00 0.00 0.00 5.34
986 1007 2.049888 TGGCATAAATCACATCCGCA 57.950 45.000 0.00 0.00 0.00 5.69
987 1008 2.413239 CGATGGCATAAATCACATCCGC 60.413 50.000 0.00 0.00 37.11 5.54
988 1009 2.413239 GCGATGGCATAAATCACATCCG 60.413 50.000 0.00 0.00 37.11 4.18
989 1010 2.553602 TGCGATGGCATAAATCACATCC 59.446 45.455 0.00 0.00 46.21 3.51
990 1011 3.902261 TGCGATGGCATAAATCACATC 57.098 42.857 0.00 0.00 46.21 3.06
1008 1029 2.482374 GACAGCAACGCCAGATGC 59.518 61.111 0.00 0.00 45.14 3.91
1009 1030 2.029288 ACGACAGCAACGCCAGATG 61.029 57.895 0.00 0.00 0.00 2.90
1010 1031 2.029288 CACGACAGCAACGCCAGAT 61.029 57.895 0.00 0.00 0.00 2.90
1011 1032 2.661537 CACGACAGCAACGCCAGA 60.662 61.111 0.00 0.00 0.00 3.86
1012 1033 4.374702 GCACGACAGCAACGCCAG 62.375 66.667 0.00 0.00 0.00 4.85
1015 1036 4.374702 CAGGCACGACAGCAACGC 62.375 66.667 0.00 0.00 35.83 4.84
1016 1037 4.374702 GCAGGCACGACAGCAACG 62.375 66.667 0.00 0.00 35.83 4.10
1017 1038 2.974698 AGCAGGCACGACAGCAAC 60.975 61.111 0.00 0.00 35.83 4.17
1018 1039 2.974148 CAGCAGGCACGACAGCAA 60.974 61.111 0.00 0.00 35.83 3.91
1019 1040 4.994471 CCAGCAGGCACGACAGCA 62.994 66.667 0.00 0.00 35.83 4.41
1020 1041 4.996434 ACCAGCAGGCACGACAGC 62.996 66.667 0.00 0.00 39.06 4.40
1021 1042 3.046087 CACCAGCAGGCACGACAG 61.046 66.667 0.00 0.00 39.06 3.51
1023 1044 4.996434 AGCACCAGCAGGCACGAC 62.996 66.667 0.00 0.00 45.49 4.34
1024 1045 4.994471 CAGCACCAGCAGGCACGA 62.994 66.667 0.00 0.00 45.49 4.35
1030 1051 2.046507 GAGGACCAGCACCAGCAG 60.047 66.667 0.00 0.00 45.49 4.24
1031 1052 2.527624 AGAGGACCAGCACCAGCA 60.528 61.111 0.00 0.00 45.49 4.41
1032 1053 2.267324 GAGAGGACCAGCACCAGC 59.733 66.667 0.00 0.00 42.56 4.85
1033 1054 2.664081 GGGAGAGGACCAGCACCAG 61.664 68.421 0.00 0.00 0.00 4.00
1034 1055 2.607750 GGGAGAGGACCAGCACCA 60.608 66.667 0.00 0.00 0.00 4.17
1035 1056 2.284995 AGGGAGAGGACCAGCACC 60.285 66.667 0.00 0.00 0.00 5.01
1036 1057 2.716017 CGAGGGAGAGGACCAGCAC 61.716 68.421 0.00 0.00 0.00 4.40
1037 1058 2.363018 CGAGGGAGAGGACCAGCA 60.363 66.667 0.00 0.00 0.00 4.41
1038 1059 2.043852 TCGAGGGAGAGGACCAGC 60.044 66.667 0.00 0.00 0.00 4.85
1039 1060 0.612174 TTGTCGAGGGAGAGGACCAG 60.612 60.000 0.00 0.00 0.00 4.00
1040 1061 0.612174 CTTGTCGAGGGAGAGGACCA 60.612 60.000 0.00 0.00 0.00 4.02
1041 1062 0.612453 ACTTGTCGAGGGAGAGGACC 60.612 60.000 0.00 0.00 0.00 4.46
1042 1063 1.202817 GAACTTGTCGAGGGAGAGGAC 59.797 57.143 0.00 0.00 0.00 3.85
1043 1064 1.546961 GAACTTGTCGAGGGAGAGGA 58.453 55.000 0.00 0.00 0.00 3.71
1044 1065 0.533032 GGAACTTGTCGAGGGAGAGG 59.467 60.000 0.00 0.00 0.00 3.69
1045 1066 1.474879 GAGGAACTTGTCGAGGGAGAG 59.525 57.143 0.00 0.00 41.55 3.20
1046 1067 1.546961 GAGGAACTTGTCGAGGGAGA 58.453 55.000 0.00 0.00 41.55 3.71
1047 1068 0.533032 GGAGGAACTTGTCGAGGGAG 59.467 60.000 0.00 0.00 41.55 4.30
1048 1069 0.114560 AGGAGGAACTTGTCGAGGGA 59.885 55.000 0.00 0.00 41.55 4.20
1049 1070 0.533032 GAGGAGGAACTTGTCGAGGG 59.467 60.000 0.00 0.00 41.55 4.30
1050 1071 0.533032 GGAGGAGGAACTTGTCGAGG 59.467 60.000 0.00 0.00 41.55 4.63
1051 1072 0.533032 GGGAGGAGGAACTTGTCGAG 59.467 60.000 0.00 0.00 41.55 4.04
1052 1073 0.903454 GGGGAGGAGGAACTTGTCGA 60.903 60.000 0.00 0.00 41.55 4.20
1053 1074 0.905337 AGGGGAGGAGGAACTTGTCG 60.905 60.000 0.00 0.00 41.55 4.35
1054 1075 1.832366 GTAGGGGAGGAGGAACTTGTC 59.168 57.143 0.00 0.00 41.55 3.18
1055 1076 1.555058 GGTAGGGGAGGAGGAACTTGT 60.555 57.143 0.00 0.00 41.55 3.16
1056 1077 1.205055 GGTAGGGGAGGAGGAACTTG 58.795 60.000 0.00 0.00 41.55 3.16
1057 1078 1.008571 GAGGTAGGGGAGGAGGAACTT 59.991 57.143 0.00 0.00 41.55 2.66
1059 1080 0.338814 TGAGGTAGGGGAGGAGGAAC 59.661 60.000 0.00 0.00 0.00 3.62
1060 1081 0.637195 CTGAGGTAGGGGAGGAGGAA 59.363 60.000 0.00 0.00 0.00 3.36
1061 1082 1.297409 CCTGAGGTAGGGGAGGAGGA 61.297 65.000 0.00 0.00 43.33 3.71
1062 1083 1.234529 CCTGAGGTAGGGGAGGAGG 59.765 68.421 0.00 0.00 43.33 4.30
1090 1111 3.827898 GACGCCACCTCCGGAGAG 61.828 72.222 33.39 23.50 40.09 3.20
1139 1160 0.737715 GGATCGCTGCGACTTGAAGT 60.738 55.000 28.41 9.58 39.18 3.01
1174 1195 0.036952 ATGGTTGTCTCGCTCCACTG 60.037 55.000 0.00 0.00 32.60 3.66
1235 1256 6.471233 CCCCCAAAATAAGAGGATTCTTTC 57.529 41.667 0.00 0.00 40.79 2.62
1255 1276 1.301293 CAAGAGGAACAGAGCCCCC 59.699 63.158 0.00 0.00 0.00 5.40
1259 1280 2.291741 CACCAAACAAGAGGAACAGAGC 59.708 50.000 0.00 0.00 0.00 4.09
1264 1285 2.067365 ACCCACCAAACAAGAGGAAC 57.933 50.000 0.00 0.00 0.00 3.62
1289 1310 2.409064 TTCACAAGTAGAGTGGGGGA 57.591 50.000 0.00 0.00 37.58 4.81
1290 1311 3.721087 AATTCACAAGTAGAGTGGGGG 57.279 47.619 0.00 0.00 37.58 5.40
1291 1312 5.066505 GCAATAATTCACAAGTAGAGTGGGG 59.933 44.000 0.00 0.00 37.58 4.96
1292 1313 5.066505 GGCAATAATTCACAAGTAGAGTGGG 59.933 44.000 0.00 0.00 37.58 4.61
1316 1337 1.442520 CAAGCCATCACCGTTTGCG 60.443 57.895 0.00 0.00 37.95 4.85
1547 1673 3.944055 ATTAGACTCGTCTTGCACAGT 57.056 42.857 4.73 0.00 40.93 3.55
1550 1676 5.460419 CCAAGATATTAGACTCGTCTTGCAC 59.540 44.000 4.73 0.00 42.59 4.57
1579 1705 5.309543 TGGACCAAGAAATCACTTAGGAGAA 59.690 40.000 0.00 0.00 0.00 2.87
1581 1707 5.165961 TGGACCAAGAAATCACTTAGGAG 57.834 43.478 0.00 0.00 0.00 3.69
1582 1708 5.779241 ATGGACCAAGAAATCACTTAGGA 57.221 39.130 0.00 0.00 0.00 2.94
1659 1802 0.391661 CAGCAGCATAGGAACCGTGT 60.392 55.000 0.00 0.00 0.00 4.49
1672 1815 3.793144 CCGAACGGAAGCAGCAGC 61.793 66.667 7.53 0.00 38.20 5.25
1698 1841 4.333649 CGTCAAGCATACATGGAGAATTGT 59.666 41.667 0.00 0.00 0.00 2.71
1718 1861 1.730593 CGTGCGAATTCGTCCTCGTC 61.731 60.000 27.24 10.61 42.22 4.20
1721 1864 2.695646 GCGTGCGAATTCGTCCTC 59.304 61.111 27.24 12.35 42.22 3.71
1736 1879 1.072391 TACATTGTTAGGTGTGCGCG 58.928 50.000 0.00 0.00 0.00 6.86
1756 1899 1.448540 CTAGCGCACAGGGACTTGG 60.449 63.158 11.47 0.00 34.60 3.61
1883 2027 8.668510 TTGTTATGCAAAGCAGGATTTAAAAA 57.331 26.923 0.00 0.00 43.65 1.94
1884 2028 7.095271 GCTTGTTATGCAAAGCAGGATTTAAAA 60.095 33.333 14.50 0.00 43.65 1.52
1885 2029 6.368516 GCTTGTTATGCAAAGCAGGATTTAAA 59.631 34.615 14.50 0.00 43.65 1.52
1886 2030 5.868801 GCTTGTTATGCAAAGCAGGATTTAA 59.131 36.000 14.50 0.00 43.65 1.52
1890 2034 2.827322 TGCTTGTTATGCAAAGCAGGAT 59.173 40.909 17.42 0.00 43.65 3.24
1891 2035 2.030007 GTGCTTGTTATGCAAAGCAGGA 60.030 45.455 20.87 0.24 43.65 3.86
1893 2037 3.240069 GAGTGCTTGTTATGCAAAGCAG 58.760 45.455 20.87 1.86 43.65 4.24
1894 2038 2.030007 GGAGTGCTTGTTATGCAAAGCA 60.030 45.455 17.42 17.42 44.86 3.91
1895 2039 2.599659 GGAGTGCTTGTTATGCAAAGC 58.400 47.619 12.87 12.87 42.41 3.51
1896 2040 2.821969 AGGGAGTGCTTGTTATGCAAAG 59.178 45.455 0.00 0.00 42.41 2.77
1897 2041 2.875296 AGGGAGTGCTTGTTATGCAAA 58.125 42.857 0.00 0.00 42.41 3.68
1900 2044 5.368989 ACTAATAGGGAGTGCTTGTTATGC 58.631 41.667 0.00 0.00 0.00 3.14
1909 2053 2.092914 AGCCACAACTAATAGGGAGTGC 60.093 50.000 0.00 0.00 0.00 4.40
1967 2111 6.255887 GGAAAGAACGAGACCATTATGTACTG 59.744 42.308 0.00 0.00 0.00 2.74
1972 2116 5.419542 TCTGGAAAGAACGAGACCATTATG 58.580 41.667 0.00 0.00 0.00 1.90
2074 2231 3.488310 CAGTGACAATTGCTTTTGTGCTC 59.512 43.478 5.05 0.00 39.85 4.26
2127 2284 3.943381 TGAAACATCTCACCATCTGATGC 59.057 43.478 12.17 0.00 40.66 3.91
2207 2364 3.511146 CCAGTTGTTGCCCTACATGAAAT 59.489 43.478 0.00 0.00 0.00 2.17
2289 2453 4.580580 GCCCTGATTGGAAACTTCGATTAT 59.419 41.667 0.00 0.00 38.35 1.28
2316 2480 4.332828 ACCACTTAATTCAGCAACCCTAC 58.667 43.478 0.00 0.00 0.00 3.18
2317 2481 4.650972 ACCACTTAATTCAGCAACCCTA 57.349 40.909 0.00 0.00 0.00 3.53
2438 2619 7.121315 GGGAAAGACATGTTTGCTAGAGTATTT 59.879 37.037 0.00 0.00 0.00 1.40
2450 2631 4.901250 ACCAGAAATGGGAAAGACATGTTT 59.099 37.500 0.00 0.00 0.00 2.83
2463 2644 2.884012 TGCGGCATATTACCAGAAATGG 59.116 45.455 0.00 0.00 0.00 3.16
2502 2683 5.642063 CCATACCGAAGCAAAAGAGAAGTTA 59.358 40.000 0.00 0.00 0.00 2.24
2592 2773 6.615088 TCAGAAAGCATGTTTAGCAGAATTC 58.385 36.000 0.00 0.00 0.00 2.17
2613 2794 7.741027 AAATGCATGATCCAGTTAGTATCAG 57.259 36.000 0.00 0.00 33.40 2.90
2769 2950 9.464714 ACATAGTATAGTTCATCGTCAATTGAC 57.535 33.333 25.68 25.68 41.47 3.18
2908 3089 3.128764 CCTCTTTGATAAAAAGCCCGTCC 59.871 47.826 0.00 0.00 0.00 4.79
3179 3361 8.927721 CACATGCAATTTGAAAACATGAGATAA 58.072 29.630 19.20 0.00 40.39 1.75
3263 3446 6.427547 CCTTGCAAAATTTAAGAAGATTGCCA 59.572 34.615 0.00 0.00 38.49 4.92
3264 3447 6.650390 TCCTTGCAAAATTTAAGAAGATTGCC 59.350 34.615 0.00 0.00 38.49 4.52
3703 4215 5.356470 CCATGAGAGGAAACAAAGGATCTTC 59.644 44.000 0.00 0.00 0.00 2.87
3739 4251 3.891977 TGACTTCAACTGAGTGTAGCTCT 59.108 43.478 0.00 0.00 44.41 4.09
3770 4282 2.888594 TCAATTGGACAGCGCTACTAC 58.111 47.619 10.99 0.00 0.00 2.73
3779 4291 6.044682 GCAATAGGGAAAATCAATTGGACAG 58.955 40.000 5.42 0.00 0.00 3.51
3982 5113 5.559035 GCAACACGAGCCATCATTATAGTTC 60.559 44.000 0.00 0.00 0.00 3.01
4188 5321 1.265905 CACCACCTTGAAACCTAACGC 59.734 52.381 0.00 0.00 0.00 4.84
4261 5414 0.462759 GACCAAATGGAGAGGGAGCG 60.463 60.000 6.42 0.00 38.94 5.03
4376 5541 1.972588 ACCCATGCCTTAAGTCCTCT 58.027 50.000 0.97 0.00 0.00 3.69
4466 5637 3.648009 TGCATCCGGTTTTCAAAACATC 58.352 40.909 14.92 0.00 0.00 3.06
4467 5638 3.742433 TGCATCCGGTTTTCAAAACAT 57.258 38.095 14.92 0.00 0.00 2.71
4468 5639 3.742433 ATGCATCCGGTTTTCAAAACA 57.258 38.095 14.92 0.00 0.00 2.83
4469 5640 5.416862 AAAATGCATCCGGTTTTCAAAAC 57.583 34.783 4.25 4.25 0.00 2.43
4542 5714 1.133216 GAAAAGGAAGAAGGCCGATGC 59.867 52.381 0.00 0.00 0.00 3.91
4549 5721 4.338400 AGTTTTCACCGAAAAGGAAGAAGG 59.662 41.667 2.25 0.00 41.32 3.46
4566 5738 6.067039 GCATTCGATTTGCTTTTCAGTTTTC 58.933 36.000 12.26 0.00 37.14 2.29
4597 5769 3.188460 ACACATTACTCAACCATCGCAAC 59.812 43.478 0.00 0.00 0.00 4.17
4601 5773 4.000325 TGGAACACATTACTCAACCATCG 59.000 43.478 0.00 0.00 0.00 3.84
4654 5826 7.142680 GCTTGTGCCTGTACTAATGTTAAAAA 58.857 34.615 0.00 0.00 0.00 1.94
4655 5827 6.566942 CGCTTGTGCCTGTACTAATGTTAAAA 60.567 38.462 0.00 0.00 35.36 1.52
4656 5828 5.106869 CGCTTGTGCCTGTACTAATGTTAAA 60.107 40.000 0.00 0.00 35.36 1.52
4657 5829 4.390603 CGCTTGTGCCTGTACTAATGTTAA 59.609 41.667 0.00 0.00 35.36 2.01
4658 5830 3.930229 CGCTTGTGCCTGTACTAATGTTA 59.070 43.478 0.00 0.00 35.36 2.41
4659 5831 2.742053 CGCTTGTGCCTGTACTAATGTT 59.258 45.455 0.00 0.00 35.36 2.71
4660 5832 2.346803 CGCTTGTGCCTGTACTAATGT 58.653 47.619 0.00 0.00 35.36 2.71
4661 5833 1.062587 GCGCTTGTGCCTGTACTAATG 59.937 52.381 0.00 0.00 35.36 1.90
4662 5834 1.066143 AGCGCTTGTGCCTGTACTAAT 60.066 47.619 2.64 0.00 35.36 1.73
4663 5835 0.320374 AGCGCTTGTGCCTGTACTAA 59.680 50.000 2.64 0.00 35.36 2.24
4664 5836 0.108804 GAGCGCTTGTGCCTGTACTA 60.109 55.000 13.26 0.00 35.36 1.82
4665 5837 1.374758 GAGCGCTTGTGCCTGTACT 60.375 57.895 13.26 0.00 35.36 2.73
4666 5838 1.021390 ATGAGCGCTTGTGCCTGTAC 61.021 55.000 13.26 0.00 35.36 2.90
4667 5839 0.534873 TATGAGCGCTTGTGCCTGTA 59.465 50.000 13.26 0.00 35.36 2.74
4668 5840 0.107508 ATATGAGCGCTTGTGCCTGT 60.108 50.000 13.26 0.00 35.36 4.00
4669 5841 1.528586 GTATATGAGCGCTTGTGCCTG 59.471 52.381 13.26 0.00 35.36 4.85
4670 5842 1.869754 CGTATATGAGCGCTTGTGCCT 60.870 52.381 13.26 0.00 35.36 4.75
4671 5843 0.508641 CGTATATGAGCGCTTGTGCC 59.491 55.000 13.26 0.00 35.36 5.01
4680 5852 2.525096 GTGTATACGCGCGTATATGAGC 59.475 50.000 45.87 36.45 43.01 4.26
4681 5853 3.999769 AGTGTATACGCGCGTATATGAG 58.000 45.455 45.87 17.96 43.01 2.90
4682 5854 3.432933 TGAGTGTATACGCGCGTATATGA 59.567 43.478 45.87 36.25 43.01 2.15
4683 5855 3.537225 GTGAGTGTATACGCGCGTATATG 59.463 47.826 45.87 19.37 43.01 1.78
4684 5856 3.425359 GGTGAGTGTATACGCGCGTATAT 60.425 47.826 45.87 36.30 43.01 0.86
4685 5857 2.096268 GGTGAGTGTATACGCGCGTATA 60.096 50.000 42.91 42.91 41.12 1.47
4686 5858 1.334419 GGTGAGTGTATACGCGCGTAT 60.334 52.381 44.83 44.83 43.04 3.06
4687 5859 0.027979 GGTGAGTGTATACGCGCGTA 59.972 55.000 40.65 40.65 37.90 4.42
4688 5860 1.226491 GGTGAGTGTATACGCGCGT 60.226 57.895 39.05 39.05 37.90 6.01
4689 5861 1.942712 GGGTGAGTGTATACGCGCG 60.943 63.158 30.96 30.96 37.90 6.86
4690 5862 1.590792 GGGGTGAGTGTATACGCGC 60.591 63.158 5.73 12.62 36.54 6.86
4691 5863 1.311859 TAGGGGTGAGTGTATACGCG 58.688 55.000 3.53 3.53 0.00 6.01
4692 5864 2.889045 TCATAGGGGTGAGTGTATACGC 59.111 50.000 8.42 8.42 0.00 4.42
4693 5865 4.556104 CGTTCATAGGGGTGAGTGTATACG 60.556 50.000 0.00 0.00 0.00 3.06
4694 5866 4.795308 GCGTTCATAGGGGTGAGTGTATAC 60.795 50.000 0.00 0.00 0.00 1.47
4695 5867 3.319972 GCGTTCATAGGGGTGAGTGTATA 59.680 47.826 0.00 0.00 0.00 1.47
4696 5868 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
4697 5869 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
4698 5870 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
4699 5871 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
4700 5872 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
4701 5873 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
4702 5874 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
4703 5875 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
4704 5876 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
4705 5877 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
4706 5878 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
4707 5879 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
4708 5880 0.721154 ATGCGTGTGTGCGTTCATAG 59.279 50.000 0.00 0.00 37.81 2.23
4709 5881 1.656594 GTATGCGTGTGTGCGTTCATA 59.343 47.619 0.00 0.00 37.81 2.15
4710 5882 0.442310 GTATGCGTGTGTGCGTTCAT 59.558 50.000 0.00 0.00 37.81 2.57
4711 5883 1.561717 GGTATGCGTGTGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
4712 5884 1.131826 GGTATGCGTGTGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
4713 5885 2.322081 GGGTATGCGTGTGTGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
4714 5886 1.879737 TAGGGTATGCGTGTGTGCGT 61.880 55.000 0.00 0.00 37.81 5.24
4715 5887 0.529773 ATAGGGTATGCGTGTGTGCG 60.530 55.000 0.00 0.00 37.81 5.34
4716 5888 1.217882 GATAGGGTATGCGTGTGTGC 58.782 55.000 0.00 0.00 0.00 4.57
4717 5889 1.540363 GGGATAGGGTATGCGTGTGTG 60.540 57.143 0.00 0.00 0.00 3.82
4718 5890 0.756903 GGGATAGGGTATGCGTGTGT 59.243 55.000 0.00 0.00 0.00 3.72
4719 5891 1.048601 AGGGATAGGGTATGCGTGTG 58.951 55.000 0.00 0.00 0.00 3.82
4720 5892 2.688902 TAGGGATAGGGTATGCGTGT 57.311 50.000 0.00 0.00 0.00 4.49
4721 5893 2.168521 CCATAGGGATAGGGTATGCGTG 59.831 54.545 0.00 0.00 35.59 5.34
4722 5894 2.043939 TCCATAGGGATAGGGTATGCGT 59.956 50.000 0.00 0.00 38.64 5.24
4723 5895 2.747177 TCCATAGGGATAGGGTATGCG 58.253 52.381 0.00 0.00 38.64 4.73
4735 5907 2.244769 ACCAGGGTTCAAATCCATAGGG 59.755 50.000 0.00 0.00 0.00 3.53
4736 5908 3.290710 CACCAGGGTTCAAATCCATAGG 58.709 50.000 0.00 0.00 0.00 2.57
4737 5909 3.290710 CCACCAGGGTTCAAATCCATAG 58.709 50.000 0.00 0.00 0.00 2.23
4738 5910 3.380471 CCACCAGGGTTCAAATCCATA 57.620 47.619 0.00 0.00 0.00 2.74
4739 5911 2.236489 CCACCAGGGTTCAAATCCAT 57.764 50.000 0.00 0.00 0.00 3.41
4740 5912 3.763931 CCACCAGGGTTCAAATCCA 57.236 52.632 0.00 0.00 0.00 3.41
4751 5923 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
4752 5924 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
4753 5925 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
4754 5926 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
4755 5927 2.270874 CTGTGGTATCCCCAGCCCAC 62.271 65.000 0.00 0.00 46.45 4.61
4756 5928 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
4757 5929 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
4758 5930 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
4759 5931 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
4764 5936 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
4765 5937 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
4766 5938 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
4767 5939 3.484953 ATGGTTAGAGGGACTGTGGTA 57.515 47.619 0.00 0.00 41.55 3.25
4768 5940 2.344093 ATGGTTAGAGGGACTGTGGT 57.656 50.000 0.00 0.00 41.55 4.16
4769 5941 2.571653 TGAATGGTTAGAGGGACTGTGG 59.428 50.000 0.00 0.00 41.55 4.17
4770 5942 3.981071 TGAATGGTTAGAGGGACTGTG 57.019 47.619 0.00 0.00 41.55 3.66
4771 5943 3.009143 GGTTGAATGGTTAGAGGGACTGT 59.991 47.826 0.00 0.00 41.55 3.55
4772 5944 3.009033 TGGTTGAATGGTTAGAGGGACTG 59.991 47.826 0.00 0.00 41.55 3.51
4774 5946 3.244770 TGTGGTTGAATGGTTAGAGGGAC 60.245 47.826 0.00 0.00 0.00 4.46
4775 5947 2.983192 TGTGGTTGAATGGTTAGAGGGA 59.017 45.455 0.00 0.00 0.00 4.20
4776 5948 3.347216 CTGTGGTTGAATGGTTAGAGGG 58.653 50.000 0.00 0.00 0.00 4.30
4777 5949 3.244911 ACCTGTGGTTGAATGGTTAGAGG 60.245 47.826 0.00 0.00 27.29 3.69
4778 5950 4.021102 ACCTGTGGTTGAATGGTTAGAG 57.979 45.455 0.00 0.00 27.29 2.43
4779 5951 4.447138 AACCTGTGGTTGAATGGTTAGA 57.553 40.909 0.71 0.00 45.07 2.10
4793 5965 2.983592 GGGGCGAACCAACCTGTG 60.984 66.667 0.00 0.00 42.91 3.66
4794 5966 3.494254 TGGGGCGAACCAACCTGT 61.494 61.111 0.00 0.00 42.91 4.00
4795 5967 2.983592 GTGGGGCGAACCAACCTG 60.984 66.667 0.00 0.00 43.34 4.00
4796 5968 4.636435 CGTGGGGCGAACCAACCT 62.636 66.667 0.00 0.00 40.40 3.50
4797 5969 4.941309 ACGTGGGGCGAACCAACC 62.941 66.667 0.00 0.00 40.40 3.77
4798 5970 3.351416 GACGTGGGGCGAACCAAC 61.351 66.667 0.00 0.00 43.34 3.77
4799 5971 4.973055 CGACGTGGGGCGAACCAA 62.973 66.667 0.00 0.00 43.34 3.67
4801 5973 4.974989 AACGACGTGGGGCGAACC 62.975 66.667 0.00 0.00 44.77 3.62
4802 5974 2.050639 AAAAACGACGTGGGGCGAAC 62.051 55.000 0.00 0.00 44.77 3.95
4803 5975 1.818785 AAAAACGACGTGGGGCGAA 60.819 52.632 0.00 0.00 44.77 4.70
4804 5976 2.203042 AAAAACGACGTGGGGCGA 60.203 55.556 0.00 0.00 44.77 5.54
4831 6003 5.066593 ACCAAAAGACTTCTCCAAGATCAC 58.933 41.667 0.00 0.00 33.34 3.06
4839 6011 9.856488 GGAAAAATAATACCAAAAGACTTCTCC 57.144 33.333 0.00 0.00 0.00 3.71
4849 6021 8.646900 AGACAAGCAAGGAAAAATAATACCAAA 58.353 29.630 0.00 0.00 0.00 3.28
4868 6041 6.183360 TGGTCATTCCTAGTACATAGACAAGC 60.183 42.308 0.00 0.00 37.07 4.01
4881 6054 6.376581 AGCTGAAATTTTCTGGTCATTCCTAG 59.623 38.462 13.05 0.00 34.87 3.02
4892 6065 3.005050 TGGCACAGAGCTGAAATTTTCTG 59.995 43.478 13.61 13.61 44.79 3.02
4936 6109 5.510009 GGGTAAGCCTCCATTTTTCGAAAAA 60.510 40.000 31.74 31.74 37.32 1.94
4937 6110 4.021807 GGGTAAGCCTCCATTTTTCGAAAA 60.022 41.667 19.08 19.08 34.45 2.29
4938 6111 3.508402 GGGTAAGCCTCCATTTTTCGAAA 59.492 43.478 6.47 6.47 34.45 3.46
4939 6112 3.086282 GGGTAAGCCTCCATTTTTCGAA 58.914 45.455 0.00 0.00 34.45 3.71
4940 6113 2.619590 GGGGTAAGCCTCCATTTTTCGA 60.620 50.000 0.00 0.00 34.45 3.71
4941 6114 1.749063 GGGGTAAGCCTCCATTTTTCG 59.251 52.381 0.00 0.00 34.45 3.46
4953 6126 4.176752 CAGAGGCCGGGGGTAAGC 62.177 72.222 2.18 0.00 0.00 3.09
4954 6127 4.176752 GCAGAGGCCGGGGGTAAG 62.177 72.222 2.18 0.00 0.00 2.34
4956 6129 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
4959 6132 2.055689 TTATGATGCAGAGGCCGGGG 62.056 60.000 2.18 0.00 40.13 5.73
4960 6133 0.037303 ATTATGATGCAGAGGCCGGG 59.963 55.000 2.18 0.00 40.13 5.73
4961 6134 1.162698 CATTATGATGCAGAGGCCGG 58.837 55.000 0.00 0.00 40.13 6.13
4962 6135 2.174363 TCATTATGATGCAGAGGCCG 57.826 50.000 0.00 0.00 40.13 6.13
4972 6145 3.161866 TGGCTGCATGCATCATTATGAT 58.838 40.909 22.97 1.25 45.15 2.45
4973 6146 2.588620 TGGCTGCATGCATCATTATGA 58.411 42.857 22.97 0.00 45.15 2.15
4974 6147 3.592898 ATGGCTGCATGCATCATTATG 57.407 42.857 22.97 8.76 45.15 1.90
4975 6148 5.932619 AATATGGCTGCATGCATCATTAT 57.067 34.783 29.23 19.42 45.15 1.28
4976 6149 7.412853 AATAATATGGCTGCATGCATCATTA 57.587 32.000 29.23 21.05 45.15 1.90
4977 6150 5.932619 ATAATATGGCTGCATGCATCATT 57.067 34.783 29.23 19.95 45.15 2.57
4978 6151 5.932619 AATAATATGGCTGCATGCATCAT 57.067 34.783 27.98 27.98 45.15 2.45
4979 6152 6.837471 TTAATAATATGGCTGCATGCATCA 57.163 33.333 22.97 21.78 45.15 3.07
4980 6153 8.600625 CATTTTAATAATATGGCTGCATGCATC 58.399 33.333 22.97 17.75 45.15 3.91
4981 6154 8.098286 ACATTTTAATAATATGGCTGCATGCAT 58.902 29.630 22.97 9.00 45.15 3.96
4982 6155 7.443477 ACATTTTAATAATATGGCTGCATGCA 58.557 30.769 21.29 21.29 45.15 3.96
4983 6156 7.599621 TGACATTTTAATAATATGGCTGCATGC 59.400 33.333 11.82 11.82 41.94 4.06
4984 6157 8.918658 GTGACATTTTAATAATATGGCTGCATG 58.081 33.333 9.96 0.00 0.00 4.06
4985 6158 8.640651 TGTGACATTTTAATAATATGGCTGCAT 58.359 29.630 9.96 0.00 0.00 3.96
4986 6159 8.005192 TGTGACATTTTAATAATATGGCTGCA 57.995 30.769 9.96 6.84 0.00 4.41
4987 6160 8.870160 TTGTGACATTTTAATAATATGGCTGC 57.130 30.769 9.96 0.00 0.00 5.25
5000 6173 9.944663 GACTTTGTGATACTTTGTGACATTTTA 57.055 29.630 0.00 0.00 0.00 1.52
5001 6174 7.643764 CGACTTTGTGATACTTTGTGACATTTT 59.356 33.333 0.00 0.00 0.00 1.82
5002 6175 7.132213 CGACTTTGTGATACTTTGTGACATTT 58.868 34.615 0.00 0.00 0.00 2.32
5003 6176 6.260050 ACGACTTTGTGATACTTTGTGACATT 59.740 34.615 0.00 0.00 0.00 2.71
5004 6177 5.758296 ACGACTTTGTGATACTTTGTGACAT 59.242 36.000 0.00 0.00 0.00 3.06
5005 6178 5.113383 ACGACTTTGTGATACTTTGTGACA 58.887 37.500 0.00 0.00 0.00 3.58
5006 6179 5.233476 TGACGACTTTGTGATACTTTGTGAC 59.767 40.000 0.00 0.00 0.00 3.67
5007 6180 5.353111 TGACGACTTTGTGATACTTTGTGA 58.647 37.500 0.00 0.00 0.00 3.58
5008 6181 5.651172 TGACGACTTTGTGATACTTTGTG 57.349 39.130 0.00 0.00 0.00 3.33
5009 6182 6.315393 ACTTTGACGACTTTGTGATACTTTGT 59.685 34.615 0.00 0.00 0.00 2.83
5010 6183 6.715464 ACTTTGACGACTTTGTGATACTTTG 58.285 36.000 0.00 0.00 0.00 2.77
5011 6184 6.920569 ACTTTGACGACTTTGTGATACTTT 57.079 33.333 0.00 0.00 0.00 2.66
5012 6185 8.603242 AATACTTTGACGACTTTGTGATACTT 57.397 30.769 0.00 0.00 0.00 2.24
5013 6186 9.136952 GTAATACTTTGACGACTTTGTGATACT 57.863 33.333 0.00 0.00 0.00 2.12
5014 6187 8.918658 TGTAATACTTTGACGACTTTGTGATAC 58.081 33.333 0.00 0.00 0.00 2.24
5015 6188 9.478768 TTGTAATACTTTGACGACTTTGTGATA 57.521 29.630 0.00 0.00 0.00 2.15
5016 6189 7.956420 TGTAATACTTTGACGACTTTGTGAT 57.044 32.000 0.00 0.00 0.00 3.06
5017 6190 7.493320 AGTTGTAATACTTTGACGACTTTGTGA 59.507 33.333 0.00 0.00 34.76 3.58
5018 6191 7.627340 AGTTGTAATACTTTGACGACTTTGTG 58.373 34.615 0.00 0.00 34.76 3.33
5019 6192 7.781548 AGTTGTAATACTTTGACGACTTTGT 57.218 32.000 0.00 0.00 34.76 2.83
5022 6195 8.428186 TGAAAGTTGTAATACTTTGACGACTT 57.572 30.769 6.49 1.82 45.68 3.01
5023 6196 8.428186 TTGAAAGTTGTAATACTTTGACGACT 57.572 30.769 6.49 0.00 45.68 4.18
5024 6197 8.333186 ACTTGAAAGTTGTAATACTTTGACGAC 58.667 33.333 6.49 0.00 45.68 4.34
5025 6198 8.332464 CACTTGAAAGTTGTAATACTTTGACGA 58.668 33.333 6.49 0.00 45.68 4.20
5026 6199 7.586300 CCACTTGAAAGTTGTAATACTTTGACG 59.414 37.037 6.49 0.00 45.68 4.35
5027 6200 8.617809 TCCACTTGAAAGTTGTAATACTTTGAC 58.382 33.333 6.49 0.00 45.68 3.18
5028 6201 8.740123 TCCACTTGAAAGTTGTAATACTTTGA 57.260 30.769 6.49 0.00 45.68 2.69
5029 6202 7.591426 GCTCCACTTGAAAGTTGTAATACTTTG 59.409 37.037 6.49 0.00 45.68 2.77
5031 6204 6.073222 CGCTCCACTTGAAAGTTGTAATACTT 60.073 38.462 0.00 0.00 39.97 2.24
5032 6205 5.408604 CGCTCCACTTGAAAGTTGTAATACT 59.591 40.000 0.00 0.00 37.08 2.12
5033 6206 5.407387 TCGCTCCACTTGAAAGTTGTAATAC 59.593 40.000 0.00 0.00 37.08 1.89
5034 6207 5.543714 TCGCTCCACTTGAAAGTTGTAATA 58.456 37.500 0.00 0.00 37.08 0.98
5035 6208 4.385825 TCGCTCCACTTGAAAGTTGTAAT 58.614 39.130 0.00 0.00 37.08 1.89
5036 6209 3.799366 TCGCTCCACTTGAAAGTTGTAA 58.201 40.909 0.00 0.00 37.08 2.41
5037 6210 3.462483 TCGCTCCACTTGAAAGTTGTA 57.538 42.857 0.00 0.00 37.08 2.41
5038 6211 2.325583 TCGCTCCACTTGAAAGTTGT 57.674 45.000 0.00 0.00 37.08 3.32
5039 6212 3.691049 TTTCGCTCCACTTGAAAGTTG 57.309 42.857 0.00 0.00 37.08 3.16
5040 6213 4.712122 TTTTTCGCTCCACTTGAAAGTT 57.288 36.364 0.00 0.00 37.08 2.66
5059 6232 9.830294 GCATGAGCTTTGCTTTATTTTTATTTT 57.170 25.926 13.63 0.00 39.88 1.82
5078 6251 3.728864 CGGTTGTGATTGTTAGCATGAGC 60.729 47.826 0.00 0.00 42.56 4.26
5079 6252 3.436704 ACGGTTGTGATTGTTAGCATGAG 59.563 43.478 0.00 0.00 0.00 2.90
5080 6253 3.407698 ACGGTTGTGATTGTTAGCATGA 58.592 40.909 0.00 0.00 0.00 3.07
5081 6254 3.829886 ACGGTTGTGATTGTTAGCATG 57.170 42.857 0.00 0.00 0.00 4.06
5094 6267 3.825014 ACACTAGTCTACATCACGGTTGT 59.175 43.478 0.00 0.00 0.00 3.32
5095 6268 4.166523 CACACTAGTCTACATCACGGTTG 58.833 47.826 0.00 0.00 0.00 3.77
5096 6269 3.192844 CCACACTAGTCTACATCACGGTT 59.807 47.826 0.00 0.00 0.00 4.44
5097 6270 2.753452 CCACACTAGTCTACATCACGGT 59.247 50.000 0.00 0.00 0.00 4.83
5098 6271 3.014623 TCCACACTAGTCTACATCACGG 58.985 50.000 0.00 0.00 0.00 4.94
5144 6319 5.641709 GGCACCTAATCTTTAGCAAAACTC 58.358 41.667 0.00 0.00 0.00 3.01
5145 6320 5.644977 GGCACCTAATCTTTAGCAAAACT 57.355 39.130 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.