Multiple sequence alignment - TraesCS4D01G144900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G144900 chr4D 100.000 2693 0 0 1 2693 133608560 133611252 0.000000e+00 4974
1 TraesCS4D01G144900 chr7B 91.800 1622 78 22 981 2578 565743444 565741854 0.000000e+00 2207
2 TraesCS4D01G144900 chr7B 92.785 887 32 8 981 1846 565788522 565787647 0.000000e+00 1254
3 TraesCS4D01G144900 chr7B 91.316 737 41 11 1845 2578 565787496 565786780 0.000000e+00 985
4 TraesCS4D01G144900 chr7B 94.964 278 14 0 670 947 565743720 565743443 1.140000e-118 436
5 TraesCS4D01G144900 chr7B 93.885 278 17 0 670 947 565788798 565788521 1.150000e-113 420
6 TraesCS4D01G144900 chr4A 92.764 1534 56 10 672 2183 427884259 427882759 0.000000e+00 2167
7 TraesCS4D01G144900 chr4A 93.182 352 22 2 17 366 427884693 427884342 1.430000e-142 516
8 TraesCS4D01G144900 chr3D 98.901 182 2 0 488 669 61601196 61601015 2.590000e-85 326
9 TraesCS4D01G144900 chr3D 97.283 184 5 0 488 671 582180522 582180339 2.010000e-81 313
10 TraesCS4D01G144900 chrUn 98.370 184 3 0 488 671 89020693 89020876 9.300000e-85 324
11 TraesCS4D01G144900 chr6D 98.352 182 3 0 488 669 2899154 2898973 1.200000e-83 320
12 TraesCS4D01G144900 chr6D 96.774 186 6 0 488 673 224672 224487 7.240000e-81 311
13 TraesCS4D01G144900 chr5D 97.849 186 3 1 485 669 434565514 434565329 1.200000e-83 320
14 TraesCS4D01G144900 chr5D 96.809 188 6 0 485 672 526241393 526241580 5.600000e-82 315
15 TraesCS4D01G144900 chr7D 97.802 182 4 0 488 669 48555251 48555432 5.600000e-82 315
16 TraesCS4D01G144900 chr1A 94.975 199 6 4 488 685 34890709 34890904 2.600000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G144900 chr4D 133608560 133611252 2692 False 4974.000000 4974 100.000 1 2693 1 chr4D.!!$F1 2692
1 TraesCS4D01G144900 chr7B 565741854 565743720 1866 True 1321.500000 2207 93.382 670 2578 2 chr7B.!!$R1 1908
2 TraesCS4D01G144900 chr7B 565786780 565788798 2018 True 886.333333 1254 92.662 670 2578 3 chr7B.!!$R2 1908
3 TraesCS4D01G144900 chr4A 427882759 427884693 1934 True 1341.500000 2167 92.973 17 2183 2 chr4A.!!$R1 2166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 533 0.036765 ACAAAATAGCGCCGACCTCA 60.037 50.0 2.29 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 2650 0.250295 CTGAGGTTGAAGCGGGTGAA 60.25 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.959749 GTGACCAAAAGAAATGTACATTCTTTA 57.040 29.630 27.52 17.87 32.84 1.85
74 75 2.038837 GGTTAAGCAGGACGCCACC 61.039 63.158 0.00 0.00 44.04 4.61
212 214 5.966636 TGTTGTATAGACGTGATGATTGC 57.033 39.130 0.00 0.00 0.00 3.56
243 245 9.302345 TCTATAAAATGTAGCGAAAGACTCTTG 57.698 33.333 0.00 0.00 0.00 3.02
244 246 7.907214 ATAAAATGTAGCGAAAGACTCTTGT 57.093 32.000 0.00 0.00 0.00 3.16
245 247 5.597813 AAATGTAGCGAAAGACTCTTGTG 57.402 39.130 0.00 0.00 0.00 3.33
256 259 0.771755 ACTCTTGTGGGGAGGTTTCC 59.228 55.000 0.00 0.00 43.23 3.13
268 271 1.213926 GAGGTTTCCATCATGGCCTCT 59.786 52.381 17.61 5.29 39.66 3.69
301 304 4.594920 AGGTATGAATATGGAGGTCACAGG 59.405 45.833 0.00 0.00 0.00 4.00
317 320 2.307098 CACAGGAGATGGGAAGGTTCTT 59.693 50.000 0.00 0.00 32.10 2.52
329 332 5.070847 TGGGAAGGTTCTTAGTAAGTTCGTT 59.929 40.000 9.71 10.83 0.00 3.85
347 350 6.586844 AGTTCGTTAAGTAGCACTTCAATCTC 59.413 38.462 5.04 0.00 39.51 2.75
366 369 8.591940 TCAATCTCTAAATGCTGCTCATATAGT 58.408 33.333 0.00 0.00 34.33 2.12
367 370 8.657729 CAATCTCTAAATGCTGCTCATATAGTG 58.342 37.037 0.00 0.00 34.33 2.74
368 371 6.162079 TCTCTAAATGCTGCTCATATAGTGC 58.838 40.000 0.00 0.00 34.33 4.40
369 372 5.857268 TCTAAATGCTGCTCATATAGTGCA 58.143 37.500 0.00 0.00 43.83 4.57
370 373 6.470278 TCTAAATGCTGCTCATATAGTGCAT 58.530 36.000 0.00 0.00 44.81 3.96
371 374 5.372547 AAATGCTGCTCATATAGTGCATG 57.627 39.130 0.00 0.00 44.81 4.06
372 375 2.774687 TGCTGCTCATATAGTGCATGG 58.225 47.619 0.00 0.00 44.81 3.66
373 376 2.369532 TGCTGCTCATATAGTGCATGGA 59.630 45.455 0.00 0.00 44.81 3.41
374 377 2.740981 GCTGCTCATATAGTGCATGGAC 59.259 50.000 9.70 9.70 44.81 4.02
375 378 3.804759 GCTGCTCATATAGTGCATGGACA 60.805 47.826 20.21 6.06 44.81 4.02
376 379 4.576879 CTGCTCATATAGTGCATGGACAT 58.423 43.478 20.21 12.73 44.81 3.06
377 380 5.727434 CTGCTCATATAGTGCATGGACATA 58.273 41.667 20.21 14.34 44.81 2.29
378 381 6.303903 TGCTCATATAGTGCATGGACATAT 57.696 37.500 20.21 15.76 41.43 1.78
379 382 7.422465 TGCTCATATAGTGCATGGACATATA 57.578 36.000 20.21 16.53 41.43 0.86
380 383 8.026396 TGCTCATATAGTGCATGGACATATAT 57.974 34.615 20.21 17.77 41.43 0.86
381 384 7.929785 TGCTCATATAGTGCATGGACATATATG 59.070 37.037 27.69 27.69 41.43 1.78
382 385 7.387122 GCTCATATAGTGCATGGACATATATGG 59.613 40.741 29.76 25.16 37.39 2.74
383 386 8.322905 TCATATAGTGCATGGACATATATGGT 57.677 34.615 29.76 13.19 37.39 3.55
384 387 8.771286 TCATATAGTGCATGGACATATATGGTT 58.229 33.333 29.76 12.70 37.39 3.67
385 388 9.399797 CATATAGTGCATGGACATATATGGTTT 57.600 33.333 26.92 9.70 34.99 3.27
386 389 7.692460 ATAGTGCATGGACATATATGGTTTG 57.308 36.000 20.21 9.52 0.00 2.93
387 390 5.448654 AGTGCATGGACATATATGGTTTGT 58.551 37.500 20.21 0.00 0.00 2.83
388 391 5.893255 AGTGCATGGACATATATGGTTTGTT 59.107 36.000 20.21 0.00 0.00 2.83
389 392 6.380846 AGTGCATGGACATATATGGTTTGTTT 59.619 34.615 20.21 0.00 0.00 2.83
390 393 7.559533 AGTGCATGGACATATATGGTTTGTTTA 59.440 33.333 20.21 0.00 0.00 2.01
391 394 7.862372 GTGCATGGACATATATGGTTTGTTTAG 59.138 37.037 16.96 0.00 0.00 1.85
392 395 7.559533 TGCATGGACATATATGGTTTGTTTAGT 59.440 33.333 16.96 0.00 0.00 2.24
393 396 8.076178 GCATGGACATATATGGTTTGTTTAGTC 58.924 37.037 16.96 1.52 0.00 2.59
394 397 9.342308 CATGGACATATATGGTTTGTTTAGTCT 57.658 33.333 16.96 0.00 0.00 3.24
421 424 7.723172 AGTGATCAAGAGAAAGATTCAAACCTT 59.277 33.333 0.00 0.00 0.00 3.50
434 437 4.664150 TCAAACCTTGAACAATTGGTCC 57.336 40.909 20.61 3.66 36.59 4.46
442 445 2.218603 GAACAATTGGTCCTGTCACGT 58.781 47.619 12.76 0.00 0.00 4.49
448 451 2.257676 GTCCTGTCACGTCGGACC 59.742 66.667 1.91 0.00 41.00 4.46
450 453 4.415332 CCTGTCACGTCGGACCGG 62.415 72.222 15.25 0.00 36.97 5.28
480 483 3.080319 GCCTTTGCTCAGTCTCATTTCT 58.920 45.455 0.00 0.00 33.53 2.52
481 484 3.119919 GCCTTTGCTCAGTCTCATTTCTG 60.120 47.826 0.00 0.00 33.53 3.02
482 485 4.321718 CCTTTGCTCAGTCTCATTTCTGA 58.678 43.478 0.00 0.00 38.20 3.27
483 486 4.153835 CCTTTGCTCAGTCTCATTTCTGAC 59.846 45.833 0.00 0.00 36.04 3.51
484 487 2.951726 TGCTCAGTCTCATTTCTGACG 58.048 47.619 0.00 0.00 38.16 4.35
485 488 2.558359 TGCTCAGTCTCATTTCTGACGA 59.442 45.455 0.00 0.00 38.16 4.20
486 489 3.005791 TGCTCAGTCTCATTTCTGACGAA 59.994 43.478 0.00 0.00 38.16 3.85
487 490 3.366422 GCTCAGTCTCATTTCTGACGAAC 59.634 47.826 0.00 0.00 38.16 3.95
488 491 4.550422 CTCAGTCTCATTTCTGACGAACA 58.450 43.478 0.00 0.00 38.16 3.18
489 492 4.944048 TCAGTCTCATTTCTGACGAACAA 58.056 39.130 0.00 0.00 38.16 2.83
490 493 5.541845 TCAGTCTCATTTCTGACGAACAAT 58.458 37.500 0.00 0.00 38.16 2.71
491 494 5.406477 TCAGTCTCATTTCTGACGAACAATG 59.594 40.000 0.00 0.00 38.16 2.82
492 495 5.406477 CAGTCTCATTTCTGACGAACAATGA 59.594 40.000 0.00 2.72 38.16 2.57
493 496 5.991606 AGTCTCATTTCTGACGAACAATGAA 59.008 36.000 0.00 0.00 38.16 2.57
494 497 6.483307 AGTCTCATTTCTGACGAACAATGAAA 59.517 34.615 0.00 0.00 38.16 2.69
495 498 7.012327 AGTCTCATTTCTGACGAACAATGAAAA 59.988 33.333 0.00 0.00 38.16 2.29
496 499 7.643764 GTCTCATTTCTGACGAACAATGAAAAA 59.356 33.333 0.00 0.00 30.23 1.94
514 517 3.546002 AAAAATAGCGCGCTACAACAA 57.454 38.095 40.42 22.36 0.00 2.83
515 518 3.546002 AAAATAGCGCGCTACAACAAA 57.454 38.095 40.42 21.55 0.00 2.83
516 519 3.546002 AAATAGCGCGCTACAACAAAA 57.454 38.095 40.42 20.74 0.00 2.44
517 520 3.757745 AATAGCGCGCTACAACAAAAT 57.242 38.095 40.42 22.12 0.00 1.82
518 521 4.868450 AATAGCGCGCTACAACAAAATA 57.132 36.364 40.42 19.14 0.00 1.40
519 522 2.806288 AGCGCGCTACAACAAAATAG 57.194 45.000 35.79 0.00 0.00 1.73
520 523 1.180166 GCGCGCTACAACAAAATAGC 58.820 50.000 26.67 0.00 40.40 2.97
524 527 1.810197 GCTACAACAAAATAGCGCCG 58.190 50.000 2.29 0.00 34.87 6.46
525 528 1.395608 GCTACAACAAAATAGCGCCGA 59.604 47.619 2.29 0.00 34.87 5.54
526 529 2.786700 GCTACAACAAAATAGCGCCGAC 60.787 50.000 2.29 0.00 34.87 4.79
527 530 0.519961 ACAACAAAATAGCGCCGACC 59.480 50.000 2.29 0.00 0.00 4.79
528 531 0.802494 CAACAAAATAGCGCCGACCT 59.198 50.000 2.29 0.00 0.00 3.85
529 532 1.084289 AACAAAATAGCGCCGACCTC 58.916 50.000 2.29 0.00 0.00 3.85
530 533 0.036765 ACAAAATAGCGCCGACCTCA 60.037 50.000 2.29 0.00 0.00 3.86
531 534 1.083489 CAAAATAGCGCCGACCTCAA 58.917 50.000 2.29 0.00 0.00 3.02
532 535 1.466950 CAAAATAGCGCCGACCTCAAA 59.533 47.619 2.29 0.00 0.00 2.69
533 536 1.816074 AAATAGCGCCGACCTCAAAA 58.184 45.000 2.29 0.00 0.00 2.44
534 537 2.038387 AATAGCGCCGACCTCAAAAT 57.962 45.000 2.29 0.00 0.00 1.82
535 538 2.902705 ATAGCGCCGACCTCAAAATA 57.097 45.000 2.29 0.00 0.00 1.40
536 539 2.902705 TAGCGCCGACCTCAAAATAT 57.097 45.000 2.29 0.00 0.00 1.28
537 540 1.299541 AGCGCCGACCTCAAAATATG 58.700 50.000 2.29 0.00 0.00 1.78
538 541 0.317020 GCGCCGACCTCAAAATATGC 60.317 55.000 0.00 0.00 0.00 3.14
539 542 1.299541 CGCCGACCTCAAAATATGCT 58.700 50.000 0.00 0.00 0.00 3.79
540 543 2.479837 CGCCGACCTCAAAATATGCTA 58.520 47.619 0.00 0.00 0.00 3.49
541 544 3.067106 CGCCGACCTCAAAATATGCTAT 58.933 45.455 0.00 0.00 0.00 2.97
542 545 3.498397 CGCCGACCTCAAAATATGCTATT 59.502 43.478 0.00 0.00 0.00 1.73
543 546 4.688879 CGCCGACCTCAAAATATGCTATTA 59.311 41.667 0.00 0.00 0.00 0.98
544 547 5.163953 CGCCGACCTCAAAATATGCTATTAG 60.164 44.000 0.00 0.00 0.00 1.73
545 548 5.390991 GCCGACCTCAAAATATGCTATTAGC 60.391 44.000 8.80 8.80 42.82 3.09
546 549 5.163953 CCGACCTCAAAATATGCTATTAGCG 60.164 44.000 10.94 0.00 46.26 4.26
547 550 5.405571 CGACCTCAAAATATGCTATTAGCGT 59.594 40.000 14.53 14.53 46.26 5.07
548 551 6.545504 ACCTCAAAATATGCTATTAGCGTG 57.454 37.500 18.61 3.72 46.26 5.34
549 552 5.049405 ACCTCAAAATATGCTATTAGCGTGC 60.049 40.000 18.61 0.00 46.26 5.34
550 553 5.180117 CCTCAAAATATGCTATTAGCGTGCT 59.820 40.000 18.61 0.00 46.26 4.40
551 554 6.368791 CCTCAAAATATGCTATTAGCGTGCTA 59.631 38.462 18.61 0.00 46.26 3.49
552 555 7.065085 CCTCAAAATATGCTATTAGCGTGCTAT 59.935 37.037 18.61 5.81 46.26 2.97
553 556 8.996024 TCAAAATATGCTATTAGCGTGCTATA 57.004 30.769 18.61 7.66 46.26 1.31
554 557 9.599866 TCAAAATATGCTATTAGCGTGCTATAT 57.400 29.630 18.61 9.39 46.26 0.86
555 558 9.855361 CAAAATATGCTATTAGCGTGCTATATC 57.145 33.333 18.61 0.00 46.26 1.63
556 559 9.599866 AAAATATGCTATTAGCGTGCTATATCA 57.400 29.630 18.61 0.00 46.26 2.15
557 560 8.581057 AATATGCTATTAGCGTGCTATATCAC 57.419 34.615 18.61 0.00 46.26 3.06
578 581 3.132629 GCTATAGCGTGCTATTAGCGA 57.867 47.619 18.62 0.92 46.26 4.93
579 582 3.102276 GCTATAGCGTGCTATTAGCGAG 58.898 50.000 18.62 11.00 46.26 5.03
580 583 3.181509 GCTATAGCGTGCTATTAGCGAGA 60.182 47.826 18.62 0.00 46.26 4.04
581 584 2.682952 TAGCGTGCTATTAGCGAGAC 57.317 50.000 10.94 3.28 46.26 3.36
582 585 0.738975 AGCGTGCTATTAGCGAGACA 59.261 50.000 10.94 0.00 46.26 3.41
583 586 1.338337 AGCGTGCTATTAGCGAGACAT 59.662 47.619 10.94 0.00 46.26 3.06
584 587 2.128035 GCGTGCTATTAGCGAGACATT 58.872 47.619 10.94 0.00 46.26 2.71
585 588 2.097202 GCGTGCTATTAGCGAGACATTG 60.097 50.000 10.94 0.00 46.26 2.82
586 589 3.116300 CGTGCTATTAGCGAGACATTGT 58.884 45.455 10.94 0.00 46.26 2.71
587 590 4.287720 CGTGCTATTAGCGAGACATTGTA 58.712 43.478 10.94 0.00 46.26 2.41
588 591 4.146616 CGTGCTATTAGCGAGACATTGTAC 59.853 45.833 10.94 0.00 46.26 2.90
589 592 5.041287 GTGCTATTAGCGAGACATTGTACA 58.959 41.667 10.94 0.00 46.26 2.90
590 593 5.041287 TGCTATTAGCGAGACATTGTACAC 58.959 41.667 10.94 0.00 46.26 2.90
591 594 4.444720 GCTATTAGCGAGACATTGTACACC 59.555 45.833 0.00 0.00 0.00 4.16
592 595 2.554806 TAGCGAGACATTGTACACCG 57.445 50.000 0.00 0.00 0.00 4.94
593 596 0.885879 AGCGAGACATTGTACACCGA 59.114 50.000 0.00 0.00 0.00 4.69
594 597 1.476891 AGCGAGACATTGTACACCGAT 59.523 47.619 0.00 0.00 0.00 4.18
595 598 2.686405 AGCGAGACATTGTACACCGATA 59.314 45.455 0.00 0.00 0.00 2.92
596 599 3.318275 AGCGAGACATTGTACACCGATAT 59.682 43.478 0.00 0.00 0.00 1.63
597 600 4.517832 AGCGAGACATTGTACACCGATATA 59.482 41.667 0.00 0.00 0.00 0.86
598 601 5.183331 AGCGAGACATTGTACACCGATATAT 59.817 40.000 0.00 0.00 0.00 0.86
599 602 5.862323 GCGAGACATTGTACACCGATATATT 59.138 40.000 0.00 0.00 0.00 1.28
600 603 6.365247 GCGAGACATTGTACACCGATATATTT 59.635 38.462 0.00 0.00 0.00 1.40
601 604 7.539710 GCGAGACATTGTACACCGATATATTTA 59.460 37.037 0.00 0.00 0.00 1.40
602 605 9.062674 CGAGACATTGTACACCGATATATTTAG 57.937 37.037 0.00 0.00 0.00 1.85
603 606 8.758633 AGACATTGTACACCGATATATTTAGC 57.241 34.615 0.00 0.00 0.00 3.09
604 607 7.541091 AGACATTGTACACCGATATATTTAGCG 59.459 37.037 0.00 0.00 36.99 4.26
605 608 7.372714 ACATTGTACACCGATATATTTAGCGA 58.627 34.615 2.29 0.00 39.53 4.93
606 609 7.541091 ACATTGTACACCGATATATTTAGCGAG 59.459 37.037 2.29 0.00 39.53 5.03
607 610 5.946298 TGTACACCGATATATTTAGCGAGG 58.054 41.667 2.29 0.00 39.53 4.63
608 611 3.846360 ACACCGATATATTTAGCGAGGC 58.154 45.455 2.29 0.00 39.53 4.70
609 612 3.257375 ACACCGATATATTTAGCGAGGCA 59.743 43.478 2.29 0.00 39.53 4.75
610 613 4.242475 CACCGATATATTTAGCGAGGCAA 58.758 43.478 2.29 0.00 39.53 4.52
611 614 4.870426 CACCGATATATTTAGCGAGGCAAT 59.130 41.667 2.29 0.00 39.53 3.56
612 615 5.351465 CACCGATATATTTAGCGAGGCAATT 59.649 40.000 2.29 0.00 39.53 2.32
613 616 5.581085 ACCGATATATTTAGCGAGGCAATTC 59.419 40.000 2.29 0.00 39.53 2.17
614 617 5.812642 CCGATATATTTAGCGAGGCAATTCT 59.187 40.000 2.29 0.00 39.53 2.40
615 618 6.313905 CCGATATATTTAGCGAGGCAATTCTT 59.686 38.462 2.29 0.00 39.53 2.52
616 619 7.491372 CCGATATATTTAGCGAGGCAATTCTTA 59.509 37.037 2.29 0.00 39.53 2.10
617 620 8.869897 CGATATATTTAGCGAGGCAATTCTTAA 58.130 33.333 0.00 0.00 39.53 1.85
621 624 5.900339 TTAGCGAGGCAATTCTTAATACG 57.100 39.130 0.00 0.00 0.00 3.06
622 625 2.544267 AGCGAGGCAATTCTTAATACGC 59.456 45.455 0.00 0.00 43.00 4.42
623 626 2.544267 GCGAGGCAATTCTTAATACGCT 59.456 45.455 0.00 0.00 40.28 5.07
624 627 3.739300 GCGAGGCAATTCTTAATACGCTA 59.261 43.478 0.00 0.00 40.28 4.26
625 628 4.389077 GCGAGGCAATTCTTAATACGCTAT 59.611 41.667 0.00 0.00 40.28 2.97
626 629 5.575606 GCGAGGCAATTCTTAATACGCTATA 59.424 40.000 0.00 0.00 40.28 1.31
627 630 6.237595 GCGAGGCAATTCTTAATACGCTATAG 60.238 42.308 0.00 0.00 40.28 1.31
628 631 6.237595 CGAGGCAATTCTTAATACGCTATAGC 60.238 42.308 15.09 15.09 37.78 2.97
641 644 3.132629 GCTATAGCGTGCTATTAGCGA 57.867 47.619 18.62 0.92 46.26 4.93
642 645 2.847133 GCTATAGCGTGCTATTAGCGAC 59.153 50.000 18.62 9.06 46.26 5.19
643 646 1.965083 ATAGCGTGCTATTAGCGACG 58.035 50.000 23.96 23.96 46.26 5.12
645 648 4.303853 CGTGCTATTAGCGACGCT 57.696 55.556 27.45 27.45 46.26 5.07
646 649 3.449789 CGTGCTATTAGCGACGCTA 57.550 52.632 25.04 25.04 46.26 4.26
647 650 1.965083 CGTGCTATTAGCGACGCTAT 58.035 50.000 28.67 19.98 46.26 2.97
648 651 3.113325 CGTGCTATTAGCGACGCTATA 57.887 47.619 28.67 19.32 46.26 1.31
649 652 3.092135 CGTGCTATTAGCGACGCTATAG 58.908 50.000 28.67 26.76 46.26 1.31
650 653 2.847133 GTGCTATTAGCGACGCTATAGC 59.153 50.000 34.54 34.54 46.26 2.97
699 702 7.201679 CGAATCATTCAAACTAGAAGCCTGAAT 60.202 37.037 0.00 0.73 37.24 2.57
768 771 5.418524 TGTCCAAATGTCAATAATGGAGGTG 59.581 40.000 0.00 0.00 40.65 4.00
795 802 9.920133 TGATTGAAAAATCCAATAATTGAACGA 57.080 25.926 0.00 0.00 34.67 3.85
812 819 4.830600 TGAACGATAGGAGCATATGGTGTA 59.169 41.667 13.10 4.16 43.77 2.90
836 843 1.352156 GCCCACGCTAGTCAAAGTCG 61.352 60.000 0.00 0.00 0.00 4.18
871 878 3.991051 CCATATCTCGCGGGCGGT 61.991 66.667 13.60 2.78 40.25 5.68
929 936 2.832129 GACCCAGAGTGAACACATCCTA 59.168 50.000 7.68 0.00 0.00 2.94
947 992 3.533907 TCCTACTCCTCCTTCTCTTGGAT 59.466 47.826 0.00 0.00 32.56 3.41
948 993 4.016105 TCCTACTCCTCCTTCTCTTGGATT 60.016 45.833 0.00 0.00 32.56 3.01
949 994 4.100808 CCTACTCCTCCTTCTCTTGGATTG 59.899 50.000 0.00 0.00 32.56 2.67
950 995 2.843113 ACTCCTCCTTCTCTTGGATTGG 59.157 50.000 0.00 0.00 32.56 3.16
953 998 3.264450 TCCTCCTTCTCTTGGATTGGAAC 59.736 47.826 0.00 0.00 32.56 3.62
954 999 3.009473 CCTCCTTCTCTTGGATTGGAACA 59.991 47.826 0.00 0.00 32.56 3.18
955 1000 4.006319 CTCCTTCTCTTGGATTGGAACAC 58.994 47.826 0.00 0.00 39.29 3.32
956 1001 3.652869 TCCTTCTCTTGGATTGGAACACT 59.347 43.478 0.00 0.00 39.29 3.55
957 1002 3.755378 CCTTCTCTTGGATTGGAACACTG 59.245 47.826 0.00 0.00 39.29 3.66
958 1003 3.423539 TCTCTTGGATTGGAACACTGG 57.576 47.619 0.00 0.00 39.29 4.00
959 1004 2.978978 TCTCTTGGATTGGAACACTGGA 59.021 45.455 0.00 0.00 39.29 3.86
960 1005 3.588842 TCTCTTGGATTGGAACACTGGAT 59.411 43.478 0.00 0.00 39.29 3.41
961 1006 3.944015 CTCTTGGATTGGAACACTGGATC 59.056 47.826 0.00 0.00 39.29 3.36
962 1007 3.588842 TCTTGGATTGGAACACTGGATCT 59.411 43.478 0.00 0.00 39.29 2.75
963 1008 3.354948 TGGATTGGAACACTGGATCTG 57.645 47.619 0.00 0.00 39.29 2.90
964 1009 2.019984 GGATTGGAACACTGGATCTGC 58.980 52.381 0.00 0.00 39.29 4.26
965 1010 2.356535 GGATTGGAACACTGGATCTGCT 60.357 50.000 0.00 0.00 39.29 4.24
966 1011 2.479566 TTGGAACACTGGATCTGCTC 57.520 50.000 0.00 0.00 39.29 4.26
967 1012 0.615331 TGGAACACTGGATCTGCTCC 59.385 55.000 0.00 0.00 45.19 4.70
978 1023 2.958213 GATCTGCTCCAAGATCGATCC 58.042 52.381 21.66 5.99 42.29 3.36
979 1024 2.079170 TCTGCTCCAAGATCGATCCT 57.921 50.000 21.66 6.20 0.00 3.24
980 1025 1.685517 TCTGCTCCAAGATCGATCCTG 59.314 52.381 21.66 18.54 0.00 3.86
981 1026 1.685517 CTGCTCCAAGATCGATCCTGA 59.314 52.381 22.81 15.07 0.00 3.86
982 1027 2.102084 CTGCTCCAAGATCGATCCTGAA 59.898 50.000 22.81 4.14 0.00 3.02
983 1028 2.159043 TGCTCCAAGATCGATCCTGAAC 60.159 50.000 22.81 12.51 0.00 3.18
984 1029 2.804933 GCTCCAAGATCGATCCTGAACC 60.805 54.545 22.81 8.33 0.00 3.62
985 1030 2.432146 CTCCAAGATCGATCCTGAACCA 59.568 50.000 22.81 5.47 0.00 3.67
986 1031 2.837591 TCCAAGATCGATCCTGAACCAA 59.162 45.455 22.81 3.09 0.00 3.67
987 1032 2.939103 CCAAGATCGATCCTGAACCAAC 59.061 50.000 22.81 0.00 0.00 3.77
1149 1194 3.341043 CGCGCCAAGATGATCGGG 61.341 66.667 0.00 2.37 0.00 5.14
1230 1275 2.049185 GGAGCAGCTCGAGGAGACA 61.049 63.158 16.47 0.00 0.00 3.41
1418 1463 2.147150 GGTCAGACTCCTCAACAAAGC 58.853 52.381 0.00 0.00 0.00 3.51
1421 1466 2.149578 CAGACTCCTCAACAAAGCTGG 58.850 52.381 0.00 0.00 0.00 4.85
1518 1574 8.600449 AAACTCAATACTCAAGTTCTCTCTTG 57.400 34.615 0.00 0.00 44.08 3.02
1519 1575 6.162777 ACTCAATACTCAAGTTCTCTCTTGC 58.837 40.000 0.00 0.00 42.90 4.01
1531 1590 1.410517 CTCTCTTGCGCCTTCCTGATA 59.589 52.381 4.18 0.00 0.00 2.15
1573 1632 7.031226 TGTCATCTGTTTCTTTCTTCCTTTG 57.969 36.000 0.00 0.00 0.00 2.77
1619 1678 1.626686 TTTGTGCCGGATGAATGGTT 58.373 45.000 5.05 0.00 0.00 3.67
1958 2179 1.372004 CGCGGTTGTAAGTCGGTCA 60.372 57.895 0.00 0.00 0.00 4.02
2012 2234 8.739972 GGTATTTTCTTTTCCTTGCAGAAGATA 58.260 33.333 0.00 0.00 0.00 1.98
2152 2374 2.286365 AATTTCCAGTTTCGGAGGCA 57.714 45.000 0.00 0.00 36.12 4.75
2184 2406 2.025344 GCAGGTGCCATTGGATCATCA 61.025 52.381 6.95 0.00 34.31 3.07
2217 2439 3.944123 CATGCCCCCTTCACATGG 58.056 61.111 0.00 0.00 37.99 3.66
2218 2440 1.000739 CATGCCCCCTTCACATGGT 59.999 57.895 0.00 0.00 37.99 3.55
2219 2441 1.000739 ATGCCCCCTTCACATGGTG 59.999 57.895 0.00 0.00 34.45 4.17
2220 2442 3.070576 GCCCCCTTCACATGGTGC 61.071 66.667 0.00 0.00 32.98 5.01
2221 2443 2.440147 CCCCCTTCACATGGTGCA 59.560 61.111 0.00 0.00 32.98 4.57
2222 2444 1.228831 CCCCCTTCACATGGTGCAA 60.229 57.895 0.00 0.00 32.98 4.08
2223 2445 1.252904 CCCCCTTCACATGGTGCAAG 61.253 60.000 0.00 0.00 32.98 4.01
2237 2459 2.270986 GCAAGTGCAACCCTCCAGG 61.271 63.158 0.00 0.00 41.59 4.45
2300 2522 2.672098 TGAAGGCCCTCTCTCATCTAC 58.328 52.381 0.00 0.00 0.00 2.59
2368 2590 6.799925 GGAAAAAGAATCATCGTAGCGAAAAA 59.200 34.615 0.00 0.00 39.99 1.94
2376 2598 3.628053 TCGTAGCGAAAAATAGCAACG 57.372 42.857 0.00 0.00 35.48 4.10
2386 2608 5.898606 CGAAAAATAGCAACGATAGCTCTTG 59.101 40.000 0.00 0.00 42.32 3.02
2387 2609 5.741388 AAAATAGCAACGATAGCTCTTGG 57.259 39.130 0.00 0.00 42.32 3.61
2388 2610 4.408182 AATAGCAACGATAGCTCTTGGT 57.592 40.909 0.00 0.00 42.32 3.67
2397 2619 3.243873 CGATAGCTCTTGGTGCCATTCTA 60.244 47.826 0.00 0.00 0.00 2.10
2398 2620 4.562347 CGATAGCTCTTGGTGCCATTCTAT 60.562 45.833 0.00 0.00 0.00 1.98
2419 2641 8.525290 TCTATGTCACATCTGATCTTGACTTA 57.475 34.615 21.13 18.46 39.33 2.24
2467 2689 2.499693 AGCTTTCTGAAGAGTAGGAGGC 59.500 50.000 0.00 0.00 34.71 4.70
2514 2736 0.821711 GCCCAGTGCCACTGTACAAA 60.822 55.000 22.54 0.00 44.50 2.83
2555 2777 7.268586 AGCTGATAGAAAATTAGAAGAGCGAA 58.731 34.615 0.00 0.00 0.00 4.70
2556 2778 7.930865 AGCTGATAGAAAATTAGAAGAGCGAAT 59.069 33.333 0.00 0.00 0.00 3.34
2557 2779 9.197694 GCTGATAGAAAATTAGAAGAGCGAATA 57.802 33.333 0.00 0.00 0.00 1.75
2563 2785 9.699703 AGAAAATTAGAAGAGCGAATATAGGAC 57.300 33.333 0.00 0.00 0.00 3.85
2564 2786 8.834749 AAAATTAGAAGAGCGAATATAGGACC 57.165 34.615 0.00 0.00 0.00 4.46
2565 2787 7.784470 AATTAGAAGAGCGAATATAGGACCT 57.216 36.000 0.00 0.00 0.00 3.85
2566 2788 7.784470 ATTAGAAGAGCGAATATAGGACCTT 57.216 36.000 0.00 0.00 0.00 3.50
2567 2789 7.598759 TTAGAAGAGCGAATATAGGACCTTT 57.401 36.000 0.00 0.00 0.00 3.11
2568 2790 8.701908 TTAGAAGAGCGAATATAGGACCTTTA 57.298 34.615 0.00 0.00 0.00 1.85
2569 2791 7.784470 AGAAGAGCGAATATAGGACCTTTAT 57.216 36.000 0.00 0.00 0.00 1.40
2570 2792 7.832769 AGAAGAGCGAATATAGGACCTTTATC 58.167 38.462 0.00 0.00 0.00 1.75
2571 2793 6.532988 AGAGCGAATATAGGACCTTTATCC 57.467 41.667 0.00 0.00 39.28 2.59
2572 2794 5.125739 AGAGCGAATATAGGACCTTTATCCG 59.874 44.000 0.00 2.36 44.22 4.18
2573 2795 3.864003 GCGAATATAGGACCTTTATCCGC 59.136 47.826 17.11 17.11 44.22 5.54
2574 2796 4.619863 GCGAATATAGGACCTTTATCCGCA 60.620 45.833 23.84 0.00 44.22 5.69
2575 2797 5.475719 CGAATATAGGACCTTTATCCGCAA 58.524 41.667 0.00 0.00 44.22 4.85
2576 2798 5.929992 CGAATATAGGACCTTTATCCGCAAA 59.070 40.000 0.00 0.00 44.22 3.68
2577 2799 6.425721 CGAATATAGGACCTTTATCCGCAAAA 59.574 38.462 0.00 0.00 44.22 2.44
2578 2800 7.041644 CGAATATAGGACCTTTATCCGCAAAAA 60.042 37.037 0.00 0.00 44.22 1.94
2612 2834 1.570813 GACCTTGGTTGCAGCAAAAC 58.429 50.000 10.11 6.77 34.95 2.43
2613 2835 1.136891 GACCTTGGTTGCAGCAAAACT 59.863 47.619 10.11 0.00 34.95 2.66
2614 2836 1.554617 ACCTTGGTTGCAGCAAAACTT 59.445 42.857 10.11 0.00 34.95 2.66
2615 2837 1.935199 CCTTGGTTGCAGCAAAACTTG 59.065 47.619 10.11 3.68 34.95 3.16
2630 2852 6.089249 CAAAACTTGCCTCCTTATTCAACT 57.911 37.500 0.00 0.00 0.00 3.16
2631 2853 6.515832 CAAAACTTGCCTCCTTATTCAACTT 58.484 36.000 0.00 0.00 0.00 2.66
2632 2854 5.966742 AACTTGCCTCCTTATTCAACTTC 57.033 39.130 0.00 0.00 0.00 3.01
2633 2855 5.248380 ACTTGCCTCCTTATTCAACTTCT 57.752 39.130 0.00 0.00 0.00 2.85
2634 2856 5.635120 ACTTGCCTCCTTATTCAACTTCTT 58.365 37.500 0.00 0.00 0.00 2.52
2635 2857 6.071320 ACTTGCCTCCTTATTCAACTTCTTT 58.929 36.000 0.00 0.00 0.00 2.52
2636 2858 6.551227 ACTTGCCTCCTTATTCAACTTCTTTT 59.449 34.615 0.00 0.00 0.00 2.27
2637 2859 6.331369 TGCCTCCTTATTCAACTTCTTTTG 57.669 37.500 0.00 0.00 0.00 2.44
2638 2860 6.068010 TGCCTCCTTATTCAACTTCTTTTGA 58.932 36.000 0.00 0.00 33.55 2.69
2639 2861 6.721208 TGCCTCCTTATTCAACTTCTTTTGAT 59.279 34.615 0.00 0.00 35.42 2.57
2640 2862 7.094205 TGCCTCCTTATTCAACTTCTTTTGATC 60.094 37.037 0.00 0.00 35.42 2.92
2641 2863 7.629437 GCCTCCTTATTCAACTTCTTTTGATCC 60.629 40.741 0.00 0.00 35.42 3.36
2642 2864 7.394359 CCTCCTTATTCAACTTCTTTTGATCCA 59.606 37.037 0.00 0.00 35.42 3.41
2643 2865 8.704849 TCCTTATTCAACTTCTTTTGATCCAA 57.295 30.769 0.00 0.00 35.42 3.53
2644 2866 9.142014 TCCTTATTCAACTTCTTTTGATCCAAA 57.858 29.630 0.00 0.00 35.42 3.28
2645 2867 9.415544 CCTTATTCAACTTCTTTTGATCCAAAG 57.584 33.333 12.06 12.06 35.42 2.77
2649 2871 8.702163 TTCAACTTCTTTTGATCCAAAGAAAC 57.298 30.769 26.08 0.00 35.42 2.78
2650 2872 7.264947 TCAACTTCTTTTGATCCAAAGAAACC 58.735 34.615 26.08 0.00 34.72 3.27
2651 2873 6.161855 ACTTCTTTTGATCCAAAGAAACCC 57.838 37.500 26.08 0.00 34.72 4.11
2652 2874 4.846779 TCTTTTGATCCAAAGAAACCCG 57.153 40.909 17.24 0.00 34.72 5.28
2653 2875 4.211920 TCTTTTGATCCAAAGAAACCCGT 58.788 39.130 17.24 0.00 34.72 5.28
2654 2876 4.647399 TCTTTTGATCCAAAGAAACCCGTT 59.353 37.500 17.24 0.00 34.72 4.44
2655 2877 5.128008 TCTTTTGATCCAAAGAAACCCGTTT 59.872 36.000 17.24 0.00 34.72 3.60
2656 2878 5.346181 TTTGATCCAAAGAAACCCGTTTT 57.654 34.783 0.00 0.00 32.11 2.43
2657 2879 4.314740 TGATCCAAAGAAACCCGTTTTG 57.685 40.909 0.00 0.00 32.11 2.44
2658 2880 2.588027 TCCAAAGAAACCCGTTTTGC 57.412 45.000 0.00 0.00 32.11 3.68
2659 2881 1.825474 TCCAAAGAAACCCGTTTTGCA 59.175 42.857 0.00 0.00 32.11 4.08
2660 2882 2.159170 TCCAAAGAAACCCGTTTTGCAG 60.159 45.455 0.00 0.00 32.11 4.41
2661 2883 2.418060 CCAAAGAAACCCGTTTTGCAGT 60.418 45.455 0.00 0.00 32.11 4.40
2662 2884 2.577449 AAGAAACCCGTTTTGCAGTG 57.423 45.000 0.00 0.00 32.11 3.66
2663 2885 1.470051 AGAAACCCGTTTTGCAGTGT 58.530 45.000 0.00 0.00 32.11 3.55
2664 2886 1.404035 AGAAACCCGTTTTGCAGTGTC 59.596 47.619 0.00 0.00 32.11 3.67
2665 2887 0.458260 AAACCCGTTTTGCAGTGTCC 59.542 50.000 0.00 0.00 0.00 4.02
2666 2888 1.720694 AACCCGTTTTGCAGTGTCCG 61.721 55.000 0.00 0.00 0.00 4.79
2667 2889 2.051345 CCGTTTTGCAGTGTCCGC 60.051 61.111 0.00 0.00 0.00 5.54
2668 2890 2.425124 CGTTTTGCAGTGTCCGCG 60.425 61.111 0.00 0.00 0.00 6.46
2669 2891 2.051345 GTTTTGCAGTGTCCGCGG 60.051 61.111 22.12 22.12 0.00 6.46
2670 2892 3.959975 TTTTGCAGTGTCCGCGGC 61.960 61.111 23.51 16.75 0.00 6.53
2674 2896 4.830765 GCAGTGTCCGCGGCCATA 62.831 66.667 23.51 0.00 0.00 2.74
2675 2897 2.586079 CAGTGTCCGCGGCCATAG 60.586 66.667 23.51 8.52 0.00 2.23
2676 2898 3.075005 AGTGTCCGCGGCCATAGT 61.075 61.111 23.51 2.07 0.00 2.12
2677 2899 2.125269 GTGTCCGCGGCCATAGTT 60.125 61.111 23.51 0.00 0.00 2.24
2678 2900 1.142314 GTGTCCGCGGCCATAGTTA 59.858 57.895 23.51 0.00 0.00 2.24
2679 2901 1.142314 TGTCCGCGGCCATAGTTAC 59.858 57.895 23.51 11.67 0.00 2.50
2680 2902 1.142314 GTCCGCGGCCATAGTTACA 59.858 57.895 23.51 0.00 0.00 2.41
2681 2903 0.874607 GTCCGCGGCCATAGTTACAG 60.875 60.000 23.51 0.00 0.00 2.74
2682 2904 1.038681 TCCGCGGCCATAGTTACAGA 61.039 55.000 23.51 0.00 0.00 3.41
2683 2905 0.033504 CCGCGGCCATAGTTACAGAT 59.966 55.000 14.67 0.00 0.00 2.90
2684 2906 1.540363 CCGCGGCCATAGTTACAGATT 60.540 52.381 14.67 0.00 0.00 2.40
2685 2907 2.210116 CGCGGCCATAGTTACAGATTT 58.790 47.619 2.24 0.00 0.00 2.17
2686 2908 3.386486 CGCGGCCATAGTTACAGATTTA 58.614 45.455 2.24 0.00 0.00 1.40
2687 2909 3.183775 CGCGGCCATAGTTACAGATTTAC 59.816 47.826 2.24 0.00 0.00 2.01
2688 2910 4.124238 GCGGCCATAGTTACAGATTTACA 58.876 43.478 2.24 0.00 0.00 2.41
2689 2911 4.755123 GCGGCCATAGTTACAGATTTACAT 59.245 41.667 2.24 0.00 0.00 2.29
2690 2912 5.929992 GCGGCCATAGTTACAGATTTACATA 59.070 40.000 2.24 0.00 0.00 2.29
2691 2913 6.425721 GCGGCCATAGTTACAGATTTACATAA 59.574 38.462 2.24 0.00 0.00 1.90
2692 2914 7.041644 GCGGCCATAGTTACAGATTTACATAAA 60.042 37.037 2.24 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.823745 AGAATGTACATTTCTTTTGGTCACT 57.176 32.000 21.63 7.27 0.00 3.41
1 2 8.871686 AAAGAATGTACATTTCTTTTGGTCAC 57.128 30.769 24.75 11.34 30.99 3.67
38 39 0.820226 CCGATCTCTGTCCAGCTCAA 59.180 55.000 0.00 0.00 0.00 3.02
39 40 0.323816 ACCGATCTCTGTCCAGCTCA 60.324 55.000 0.00 0.00 0.00 4.26
145 146 7.682787 AAATATAGGTCTGCTGGGGATATAG 57.317 40.000 0.00 0.00 0.00 1.31
172 174 6.709018 ACAACAAGTTTAAGTACAGGCAAT 57.291 33.333 0.00 0.00 0.00 3.56
225 227 3.589988 CCACAAGAGTCTTTCGCTACAT 58.410 45.455 1.56 0.00 0.00 2.29
226 228 2.288825 CCCACAAGAGTCTTTCGCTACA 60.289 50.000 1.56 0.00 0.00 2.74
227 229 2.338500 CCCACAAGAGTCTTTCGCTAC 58.662 52.381 1.56 0.00 0.00 3.58
237 239 0.771755 GGAAACCTCCCCACAAGAGT 59.228 55.000 0.00 0.00 35.42 3.24
240 242 1.075374 TGATGGAAACCTCCCCACAAG 59.925 52.381 0.00 0.00 41.64 3.16
243 245 1.686115 CCATGATGGAAACCTCCCCAC 60.686 57.143 5.27 0.00 40.96 4.61
244 246 0.630673 CCATGATGGAAACCTCCCCA 59.369 55.000 5.27 0.00 40.96 4.96
245 247 0.756815 GCCATGATGGAAACCTCCCC 60.757 60.000 17.22 0.00 40.96 4.81
268 271 1.288508 ATTCATACCTGCTGGGGCCA 61.289 55.000 14.82 0.00 40.03 5.36
272 275 3.307975 CCTCCATATTCATACCTGCTGGG 60.308 52.174 14.82 4.64 41.89 4.45
276 279 4.202357 TGTGACCTCCATATTCATACCTGC 60.202 45.833 0.00 0.00 0.00 4.85
301 304 6.547930 ACTTACTAAGAACCTTCCCATCTC 57.452 41.667 2.65 0.00 0.00 2.75
317 320 7.874940 TGAAGTGCTACTTAACGAACTTACTA 58.125 34.615 0.00 0.00 38.80 1.82
329 332 8.260818 AGCATTTAGAGATTGAAGTGCTACTTA 58.739 33.333 3.18 0.00 38.80 2.24
347 350 6.403309 CCATGCACTATATGAGCAGCATTTAG 60.403 42.308 12.28 12.28 43.80 1.85
366 369 6.788598 AAACAAACCATATATGTCCATGCA 57.211 33.333 11.73 0.00 0.00 3.96
367 370 7.940850 ACTAAACAAACCATATATGTCCATGC 58.059 34.615 11.73 0.00 0.00 4.06
368 371 9.342308 AGACTAAACAAACCATATATGTCCATG 57.658 33.333 11.73 7.51 0.00 3.66
378 381 9.653287 CTTGATCACTAGACTAAACAAACCATA 57.347 33.333 0.00 0.00 0.00 2.74
379 382 8.375506 TCTTGATCACTAGACTAAACAAACCAT 58.624 33.333 0.00 0.00 0.00 3.55
380 383 7.732025 TCTTGATCACTAGACTAAACAAACCA 58.268 34.615 0.00 0.00 0.00 3.67
381 384 8.088981 TCTCTTGATCACTAGACTAAACAAACC 58.911 37.037 0.00 0.00 0.00 3.27
382 385 9.477484 TTCTCTTGATCACTAGACTAAACAAAC 57.523 33.333 0.00 0.00 0.00 2.93
384 387 9.698309 CTTTCTCTTGATCACTAGACTAAACAA 57.302 33.333 0.00 0.00 0.00 2.83
385 388 9.078990 TCTTTCTCTTGATCACTAGACTAAACA 57.921 33.333 0.00 0.00 0.00 2.83
389 392 9.467796 TGAATCTTTCTCTTGATCACTAGACTA 57.532 33.333 0.00 0.00 0.00 2.59
390 393 8.359875 TGAATCTTTCTCTTGATCACTAGACT 57.640 34.615 0.00 0.00 0.00 3.24
391 394 8.994429 TTGAATCTTTCTCTTGATCACTAGAC 57.006 34.615 0.00 0.00 0.00 2.59
392 395 9.429359 GTTTGAATCTTTCTCTTGATCACTAGA 57.571 33.333 0.00 0.00 0.00 2.43
393 396 8.663911 GGTTTGAATCTTTCTCTTGATCACTAG 58.336 37.037 0.00 0.00 0.00 2.57
394 397 8.378565 AGGTTTGAATCTTTCTCTTGATCACTA 58.621 33.333 0.00 0.00 0.00 2.74
395 398 7.230027 AGGTTTGAATCTTTCTCTTGATCACT 58.770 34.615 0.00 0.00 0.00 3.41
396 399 7.446001 AGGTTTGAATCTTTCTCTTGATCAC 57.554 36.000 0.00 0.00 0.00 3.06
397 400 7.720957 TCAAGGTTTGAATCTTTCTCTTGATCA 59.279 33.333 0.00 0.00 36.59 2.92
398 401 8.103948 TCAAGGTTTGAATCTTTCTCTTGATC 57.896 34.615 0.00 0.00 36.59 2.92
399 402 8.469309 TTCAAGGTTTGAATCTTTCTCTTGAT 57.531 30.769 0.00 0.00 44.21 2.57
400 403 7.880160 TTCAAGGTTTGAATCTTTCTCTTGA 57.120 32.000 0.36 0.00 44.21 3.02
421 424 2.217750 CGTGACAGGACCAATTGTTCA 58.782 47.619 5.29 0.00 0.00 3.18
462 465 3.742882 CGTCAGAAATGAGACTGAGCAAA 59.257 43.478 0.00 0.00 42.56 3.68
494 497 3.546002 TTGTTGTAGCGCGCTATTTTT 57.454 38.095 39.99 18.75 0.00 1.94
495 498 3.546002 TTTGTTGTAGCGCGCTATTTT 57.454 38.095 39.99 19.54 0.00 1.82
496 499 3.546002 TTTTGTTGTAGCGCGCTATTT 57.454 38.095 39.99 19.95 0.00 1.40
497 500 3.757745 ATTTTGTTGTAGCGCGCTATT 57.242 38.095 39.99 20.35 0.00 1.73
498 501 3.303132 GCTATTTTGTTGTAGCGCGCTAT 60.303 43.478 39.99 25.91 34.60 2.97
499 502 2.029970 GCTATTTTGTTGTAGCGCGCTA 59.970 45.455 35.48 35.48 34.60 4.26
500 503 1.202031 GCTATTTTGTTGTAGCGCGCT 60.202 47.619 38.01 38.01 34.60 5.92
501 504 1.180166 GCTATTTTGTTGTAGCGCGC 58.820 50.000 26.66 26.66 34.60 6.86
505 508 1.395608 TCGGCGCTATTTTGTTGTAGC 59.604 47.619 7.64 0.00 39.86 3.58
506 509 2.222953 GGTCGGCGCTATTTTGTTGTAG 60.223 50.000 7.64 0.00 0.00 2.74
507 510 1.733360 GGTCGGCGCTATTTTGTTGTA 59.267 47.619 7.64 0.00 0.00 2.41
508 511 0.519961 GGTCGGCGCTATTTTGTTGT 59.480 50.000 7.64 0.00 0.00 3.32
509 512 0.802494 AGGTCGGCGCTATTTTGTTG 59.198 50.000 7.64 0.00 0.00 3.33
510 513 1.084289 GAGGTCGGCGCTATTTTGTT 58.916 50.000 7.64 0.00 0.00 2.83
511 514 0.036765 TGAGGTCGGCGCTATTTTGT 60.037 50.000 7.64 0.00 0.00 2.83
512 515 1.083489 TTGAGGTCGGCGCTATTTTG 58.917 50.000 7.64 0.00 0.00 2.44
513 516 1.816074 TTTGAGGTCGGCGCTATTTT 58.184 45.000 7.64 0.00 0.00 1.82
514 517 1.816074 TTTTGAGGTCGGCGCTATTT 58.184 45.000 7.64 0.00 0.00 1.40
515 518 2.038387 ATTTTGAGGTCGGCGCTATT 57.962 45.000 7.64 0.00 0.00 1.73
516 519 2.902705 TATTTTGAGGTCGGCGCTAT 57.097 45.000 7.64 0.00 0.00 2.97
517 520 2.479837 CATATTTTGAGGTCGGCGCTA 58.520 47.619 7.64 0.00 0.00 4.26
518 521 1.299541 CATATTTTGAGGTCGGCGCT 58.700 50.000 7.64 0.00 0.00 5.92
519 522 0.317020 GCATATTTTGAGGTCGGCGC 60.317 55.000 0.00 0.00 0.00 6.53
520 523 1.299541 AGCATATTTTGAGGTCGGCG 58.700 50.000 0.00 0.00 0.00 6.46
521 524 5.390991 GCTAATAGCATATTTTGAGGTCGGC 60.391 44.000 7.49 0.00 41.89 5.54
522 525 5.163953 CGCTAATAGCATATTTTGAGGTCGG 60.164 44.000 13.15 0.00 42.58 4.79
523 526 5.405571 ACGCTAATAGCATATTTTGAGGTCG 59.594 40.000 13.15 0.00 42.58 4.79
524 527 6.593978 CACGCTAATAGCATATTTTGAGGTC 58.406 40.000 13.15 0.00 42.58 3.85
525 528 5.049405 GCACGCTAATAGCATATTTTGAGGT 60.049 40.000 13.15 0.00 42.58 3.85
526 529 5.180117 AGCACGCTAATAGCATATTTTGAGG 59.820 40.000 13.15 0.00 42.58 3.86
527 530 6.233430 AGCACGCTAATAGCATATTTTGAG 57.767 37.500 13.15 0.00 42.58 3.02
528 531 7.905604 ATAGCACGCTAATAGCATATTTTGA 57.094 32.000 13.15 0.00 42.58 2.69
529 532 9.855361 GATATAGCACGCTAATAGCATATTTTG 57.145 33.333 13.15 0.00 42.58 2.44
530 533 9.599866 TGATATAGCACGCTAATAGCATATTTT 57.400 29.630 13.15 0.00 42.58 1.82
531 534 9.035607 GTGATATAGCACGCTAATAGCATATTT 57.964 33.333 13.15 0.91 42.58 1.40
532 535 8.581057 GTGATATAGCACGCTAATAGCATATT 57.419 34.615 13.15 0.00 42.58 1.28
558 561 3.102276 CTCGCTAATAGCACGCTATAGC 58.898 50.000 15.09 15.09 42.58 2.97
559 562 4.142881 TGTCTCGCTAATAGCACGCTATAG 60.143 45.833 13.15 10.32 42.58 1.31
560 563 3.749609 TGTCTCGCTAATAGCACGCTATA 59.250 43.478 13.15 1.16 42.58 1.31
561 564 2.552743 TGTCTCGCTAATAGCACGCTAT 59.447 45.455 13.15 5.72 42.58 2.97
562 565 1.944709 TGTCTCGCTAATAGCACGCTA 59.055 47.619 13.15 0.39 42.58 4.26
563 566 0.738975 TGTCTCGCTAATAGCACGCT 59.261 50.000 13.15 0.00 42.58 5.07
564 567 1.772182 ATGTCTCGCTAATAGCACGC 58.228 50.000 13.15 0.19 42.58 5.34
565 568 3.116300 ACAATGTCTCGCTAATAGCACG 58.884 45.455 13.15 2.42 42.58 5.34
566 569 5.041287 TGTACAATGTCTCGCTAATAGCAC 58.959 41.667 13.15 3.79 42.58 4.40
567 570 5.041287 GTGTACAATGTCTCGCTAATAGCA 58.959 41.667 13.15 0.00 42.58 3.49
568 571 4.444720 GGTGTACAATGTCTCGCTAATAGC 59.555 45.833 1.41 1.41 38.02 2.97
569 572 4.675565 CGGTGTACAATGTCTCGCTAATAG 59.324 45.833 0.00 0.00 0.00 1.73
570 573 4.336153 TCGGTGTACAATGTCTCGCTAATA 59.664 41.667 0.00 0.00 0.00 0.98
571 574 3.129813 TCGGTGTACAATGTCTCGCTAAT 59.870 43.478 0.00 0.00 0.00 1.73
572 575 2.488937 TCGGTGTACAATGTCTCGCTAA 59.511 45.455 0.00 0.00 0.00 3.09
573 576 2.086094 TCGGTGTACAATGTCTCGCTA 58.914 47.619 0.00 0.00 0.00 4.26
574 577 0.885879 TCGGTGTACAATGTCTCGCT 59.114 50.000 0.00 0.00 0.00 4.93
575 578 1.922570 ATCGGTGTACAATGTCTCGC 58.077 50.000 0.00 0.00 0.00 5.03
576 579 7.869016 AAATATATCGGTGTACAATGTCTCG 57.131 36.000 0.00 0.00 0.00 4.04
577 580 8.861101 GCTAAATATATCGGTGTACAATGTCTC 58.139 37.037 0.00 0.00 0.00 3.36
578 581 7.541091 CGCTAAATATATCGGTGTACAATGTCT 59.459 37.037 0.00 0.00 0.00 3.41
579 582 7.539710 TCGCTAAATATATCGGTGTACAATGTC 59.460 37.037 0.00 0.00 0.00 3.06
580 583 7.372714 TCGCTAAATATATCGGTGTACAATGT 58.627 34.615 0.00 0.00 0.00 2.71
581 584 7.009265 CCTCGCTAAATATATCGGTGTACAATG 59.991 40.741 0.00 0.00 0.00 2.82
582 585 7.033791 CCTCGCTAAATATATCGGTGTACAAT 58.966 38.462 0.00 0.00 0.00 2.71
583 586 6.384224 CCTCGCTAAATATATCGGTGTACAA 58.616 40.000 0.00 0.00 0.00 2.41
584 587 5.620654 GCCTCGCTAAATATATCGGTGTACA 60.621 44.000 0.00 0.00 0.00 2.90
585 588 4.797349 GCCTCGCTAAATATATCGGTGTAC 59.203 45.833 0.00 0.00 0.00 2.90
586 589 4.460034 TGCCTCGCTAAATATATCGGTGTA 59.540 41.667 0.00 0.00 0.00 2.90
587 590 3.257375 TGCCTCGCTAAATATATCGGTGT 59.743 43.478 0.00 0.00 0.00 4.16
588 591 3.845178 TGCCTCGCTAAATATATCGGTG 58.155 45.455 0.00 0.00 0.00 4.94
589 592 4.530710 TTGCCTCGCTAAATATATCGGT 57.469 40.909 0.00 0.00 0.00 4.69
590 593 5.812642 AGAATTGCCTCGCTAAATATATCGG 59.187 40.000 0.00 0.00 0.00 4.18
591 594 6.893958 AGAATTGCCTCGCTAAATATATCG 57.106 37.500 0.00 0.00 0.00 2.92
595 598 8.656849 CGTATTAAGAATTGCCTCGCTAAATAT 58.343 33.333 0.00 0.00 0.00 1.28
596 599 7.359765 GCGTATTAAGAATTGCCTCGCTAAATA 60.360 37.037 0.00 0.00 35.21 1.40
597 600 6.565999 GCGTATTAAGAATTGCCTCGCTAAAT 60.566 38.462 0.00 0.00 35.21 1.40
598 601 5.277154 GCGTATTAAGAATTGCCTCGCTAAA 60.277 40.000 0.00 0.00 35.21 1.85
599 602 4.210537 GCGTATTAAGAATTGCCTCGCTAA 59.789 41.667 0.00 0.00 35.21 3.09
600 603 3.739300 GCGTATTAAGAATTGCCTCGCTA 59.261 43.478 0.00 0.00 35.21 4.26
601 604 2.544267 GCGTATTAAGAATTGCCTCGCT 59.456 45.455 0.00 0.00 35.21 4.93
602 605 2.544267 AGCGTATTAAGAATTGCCTCGC 59.456 45.455 0.00 0.00 37.01 5.03
603 606 6.237595 GCTATAGCGTATTAAGAATTGCCTCG 60.238 42.308 9.40 0.00 0.00 4.63
604 607 6.994992 GCTATAGCGTATTAAGAATTGCCTC 58.005 40.000 9.40 0.00 0.00 4.70
605 608 6.969828 GCTATAGCGTATTAAGAATTGCCT 57.030 37.500 9.40 0.00 0.00 4.75
621 624 2.847133 GTCGCTAATAGCACGCTATAGC 59.153 50.000 15.09 15.09 42.58 2.97
622 625 3.092135 CGTCGCTAATAGCACGCTATAG 58.908 50.000 18.51 10.32 42.58 1.31
623 626 3.113325 CGTCGCTAATAGCACGCTATA 57.887 47.619 18.51 1.16 42.58 1.31
624 627 1.965083 CGTCGCTAATAGCACGCTAT 58.035 50.000 18.51 5.72 42.58 2.97
625 628 3.449789 CGTCGCTAATAGCACGCTA 57.550 52.632 18.51 0.39 42.58 4.26
626 629 4.303853 CGTCGCTAATAGCACGCT 57.696 55.556 18.51 0.00 42.58 5.07
628 631 1.965083 ATAGCGTCGCTAATAGCACG 58.035 50.000 29.13 22.97 44.62 5.34
629 632 2.847133 GCTATAGCGTCGCTAATAGCAC 59.153 50.000 34.13 20.55 44.62 4.40
630 633 3.132629 GCTATAGCGTCGCTAATAGCA 57.867 47.619 34.13 19.54 44.62 3.49
659 662 5.008514 TGAATGATTCGTCAGCACTGAAAAA 59.991 36.000 1.05 0.51 41.85 1.94
660 663 4.514816 TGAATGATTCGTCAGCACTGAAAA 59.485 37.500 1.05 0.86 41.85 2.29
661 664 4.064388 TGAATGATTCGTCAGCACTGAAA 58.936 39.130 1.05 0.00 41.85 2.69
662 665 3.663025 TGAATGATTCGTCAGCACTGAA 58.337 40.909 1.05 0.00 41.85 3.02
663 666 3.317603 TGAATGATTCGTCAGCACTGA 57.682 42.857 0.18 0.00 37.24 3.41
664 667 4.083643 AGTTTGAATGATTCGTCAGCACTG 60.084 41.667 0.18 0.00 0.00 3.66
665 668 4.067896 AGTTTGAATGATTCGTCAGCACT 58.932 39.130 0.18 0.00 0.00 4.40
666 669 4.410492 AGTTTGAATGATTCGTCAGCAC 57.590 40.909 0.18 0.00 0.00 4.40
667 670 5.478407 TCTAGTTTGAATGATTCGTCAGCA 58.522 37.500 0.18 0.00 0.00 4.41
668 671 6.408858 TTCTAGTTTGAATGATTCGTCAGC 57.591 37.500 0.18 0.00 0.00 4.26
699 702 2.116556 GGGCAGGTTCCCGGAAAA 59.883 61.111 0.73 0.00 36.38 2.29
768 771 9.956797 CGTTCAATTATTGGATTTTTCAATCAC 57.043 29.630 5.02 0.00 40.77 3.06
795 802 6.409695 GGGCAATATACACCATATGCTCCTAT 60.410 42.308 0.00 0.00 29.85 2.57
812 819 3.206150 CTTTGACTAGCGTGGGCAATAT 58.794 45.455 0.00 0.00 43.41 1.28
836 843 1.268692 TGGTGTACAAGTGACGACGAC 60.269 52.381 0.00 0.00 0.00 4.34
871 878 5.804639 TCCAACTAGCTGCTCATAAAAAGA 58.195 37.500 4.91 0.00 0.00 2.52
929 936 2.843113 CCAATCCAAGAGAAGGAGGAGT 59.157 50.000 0.00 0.00 38.83 3.85
947 992 2.479566 GAGCAGATCCAGTGTTCCAA 57.520 50.000 0.00 0.00 0.00 3.53
958 1003 2.562298 AGGATCGATCTTGGAGCAGATC 59.438 50.000 23.96 3.79 44.11 2.75
959 1004 2.299582 CAGGATCGATCTTGGAGCAGAT 59.700 50.000 25.48 0.00 36.12 2.90
960 1005 1.685517 CAGGATCGATCTTGGAGCAGA 59.314 52.381 25.48 0.00 31.03 4.26
961 1006 1.685517 TCAGGATCGATCTTGGAGCAG 59.314 52.381 30.29 10.15 34.94 4.24
962 1007 1.780503 TCAGGATCGATCTTGGAGCA 58.219 50.000 30.29 13.66 34.94 4.26
963 1008 2.478831 GTTCAGGATCGATCTTGGAGC 58.521 52.381 30.29 19.69 34.94 4.70
964 1009 2.432146 TGGTTCAGGATCGATCTTGGAG 59.568 50.000 30.29 11.46 34.94 3.86
965 1010 2.466846 TGGTTCAGGATCGATCTTGGA 58.533 47.619 30.29 23.21 34.94 3.53
966 1011 2.939103 GTTGGTTCAGGATCGATCTTGG 59.061 50.000 30.29 17.88 34.94 3.61
967 1012 2.939103 GGTTGGTTCAGGATCGATCTTG 59.061 50.000 26.80 26.80 35.45 3.02
968 1013 2.092914 GGGTTGGTTCAGGATCGATCTT 60.093 50.000 23.96 15.00 0.00 2.40
969 1014 1.486726 GGGTTGGTTCAGGATCGATCT 59.513 52.381 23.96 8.31 0.00 2.75
970 1015 1.209504 TGGGTTGGTTCAGGATCGATC 59.790 52.381 17.36 17.36 0.00 3.69
971 1016 1.285280 TGGGTTGGTTCAGGATCGAT 58.715 50.000 0.00 0.00 0.00 3.59
972 1017 1.003118 CTTGGGTTGGTTCAGGATCGA 59.997 52.381 0.00 0.00 0.00 3.59
973 1018 1.003118 TCTTGGGTTGGTTCAGGATCG 59.997 52.381 0.00 0.00 0.00 3.69
974 1019 2.879103 TCTTGGGTTGGTTCAGGATC 57.121 50.000 0.00 0.00 0.00 3.36
975 1020 4.860022 CTTATCTTGGGTTGGTTCAGGAT 58.140 43.478 0.00 0.00 34.72 3.24
976 1021 3.561313 GCTTATCTTGGGTTGGTTCAGGA 60.561 47.826 0.00 0.00 0.00 3.86
977 1022 2.755103 GCTTATCTTGGGTTGGTTCAGG 59.245 50.000 0.00 0.00 0.00 3.86
978 1023 3.420893 TGCTTATCTTGGGTTGGTTCAG 58.579 45.455 0.00 0.00 0.00 3.02
979 1024 3.517296 TGCTTATCTTGGGTTGGTTCA 57.483 42.857 0.00 0.00 0.00 3.18
980 1025 4.381932 CCATTGCTTATCTTGGGTTGGTTC 60.382 45.833 0.00 0.00 0.00 3.62
981 1026 3.515104 CCATTGCTTATCTTGGGTTGGTT 59.485 43.478 0.00 0.00 0.00 3.67
982 1027 3.099141 CCATTGCTTATCTTGGGTTGGT 58.901 45.455 0.00 0.00 0.00 3.67
983 1028 2.159057 GCCATTGCTTATCTTGGGTTGG 60.159 50.000 0.00 0.00 33.53 3.77
984 1029 3.169355 GCCATTGCTTATCTTGGGTTG 57.831 47.619 0.00 0.00 33.53 3.77
1272 1317 0.260816 AGCACCGGTAGAGGTATCCA 59.739 55.000 6.87 0.00 43.89 3.41
1418 1463 1.197430 AGGAGGTTCAGGAGCACCAG 61.197 60.000 2.07 0.00 38.75 4.00
1421 1466 0.687354 TGAAGGAGGTTCAGGAGCAC 59.313 55.000 0.00 0.00 40.45 4.40
1482 1538 7.891183 TGAGTATTGAGTTTAGTTTCTGCTC 57.109 36.000 0.00 0.00 0.00 4.26
1518 1574 1.230324 GTCCATTATCAGGAAGGCGC 58.770 55.000 0.00 0.00 36.80 6.53
1519 1575 2.614057 GTTGTCCATTATCAGGAAGGCG 59.386 50.000 0.00 0.00 36.80 5.52
1619 1678 5.745312 TCCTGAATGAGAAACTAGCAAGA 57.255 39.130 0.00 0.00 0.00 3.02
1802 1866 7.670364 TGTGCTAGCTAGATAATTGCTAATCA 58.330 34.615 25.15 4.93 40.90 2.57
1958 2179 3.500680 ACCTATTTTGCACACGAACGAAT 59.499 39.130 0.14 0.00 0.00 3.34
2012 2234 6.611613 TGGTCAGTTCTCAACTATGATCTT 57.388 37.500 0.00 0.00 40.46 2.40
2152 2374 4.235762 ACCTGCAACCGCGACTGT 62.236 61.111 8.23 0.00 42.97 3.55
2173 2395 8.641498 AAGTTTCTTTACACTGATGATCCAAT 57.359 30.769 0.00 0.00 0.00 3.16
2184 2406 3.826729 GGGCATGGAAGTTTCTTTACACT 59.173 43.478 0.00 0.00 0.00 3.55
2219 2441 2.270986 CCTGGAGGGTTGCACTTGC 61.271 63.158 0.00 0.00 42.50 4.01
2220 2442 4.085876 CCTGGAGGGTTGCACTTG 57.914 61.111 0.00 0.00 0.00 3.16
2237 2459 2.271944 ACACAGGCTACCCTTTGAAC 57.728 50.000 3.12 0.00 40.64 3.18
2300 2522 7.244192 GTGTAGAAAAGCTACCTTTGCTTATG 58.756 38.462 2.27 0.00 43.09 1.90
2323 2545 9.717942 TTTTTCCTGAAATAATTAATGTGGGTG 57.282 29.630 0.00 0.00 0.00 4.61
2368 2590 3.722147 CACCAAGAGCTATCGTTGCTAT 58.278 45.455 0.00 0.00 41.30 2.97
2376 2598 3.205784 AGAATGGCACCAAGAGCTATC 57.794 47.619 0.00 0.00 31.59 2.08
2428 2650 0.250295 CTGAGGTTGAAGCGGGTGAA 60.250 55.000 0.00 0.00 0.00 3.18
2429 2651 1.371183 CTGAGGTTGAAGCGGGTGA 59.629 57.895 0.00 0.00 0.00 4.02
2431 2653 2.032681 GCTGAGGTTGAAGCGGGT 59.967 61.111 0.00 0.00 0.00 5.28
2432 2654 0.890996 AAAGCTGAGGTTGAAGCGGG 60.891 55.000 0.00 0.00 44.34 6.13
2433 2655 0.519077 GAAAGCTGAGGTTGAAGCGG 59.481 55.000 0.00 0.00 44.34 5.52
2434 2656 1.196354 CAGAAAGCTGAGGTTGAAGCG 59.804 52.381 0.00 0.00 45.17 4.68
2457 2679 2.548295 CCGAGCTCGCCTCCTACTC 61.548 68.421 30.49 0.00 37.27 2.59
2580 2802 6.723977 TGCAACCAAGGTCCTATATTCTTTTT 59.276 34.615 0.00 0.00 0.00 1.94
2581 2803 6.252995 TGCAACCAAGGTCCTATATTCTTTT 58.747 36.000 0.00 0.00 0.00 2.27
2582 2804 5.826643 TGCAACCAAGGTCCTATATTCTTT 58.173 37.500 0.00 0.00 0.00 2.52
2583 2805 5.440610 CTGCAACCAAGGTCCTATATTCTT 58.559 41.667 0.00 0.00 0.00 2.52
2584 2806 4.687219 GCTGCAACCAAGGTCCTATATTCT 60.687 45.833 0.00 0.00 0.00 2.40
2585 2807 3.565902 GCTGCAACCAAGGTCCTATATTC 59.434 47.826 0.00 0.00 0.00 1.75
2586 2808 3.053693 TGCTGCAACCAAGGTCCTATATT 60.054 43.478 0.00 0.00 0.00 1.28
2612 2834 6.581171 AAAGAAGTTGAATAAGGAGGCAAG 57.419 37.500 0.00 0.00 0.00 4.01
2613 2835 6.549364 TCAAAAGAAGTTGAATAAGGAGGCAA 59.451 34.615 0.00 0.00 34.59 4.52
2614 2836 6.068010 TCAAAAGAAGTTGAATAAGGAGGCA 58.932 36.000 0.00 0.00 34.59 4.75
2615 2837 6.575162 TCAAAAGAAGTTGAATAAGGAGGC 57.425 37.500 0.00 0.00 34.59 4.70
2616 2838 7.394359 TGGATCAAAAGAAGTTGAATAAGGAGG 59.606 37.037 0.00 0.00 40.76 4.30
2617 2839 8.340618 TGGATCAAAAGAAGTTGAATAAGGAG 57.659 34.615 0.00 0.00 40.76 3.69
2618 2840 8.704849 TTGGATCAAAAGAAGTTGAATAAGGA 57.295 30.769 0.00 0.00 40.76 3.36
2619 2841 9.415544 CTTTGGATCAAAAGAAGTTGAATAAGG 57.584 33.333 16.47 0.00 40.76 2.69
2631 2853 4.211920 ACGGGTTTCTTTGGATCAAAAGA 58.788 39.130 19.52 19.52 42.89 2.52
2632 2854 4.584327 ACGGGTTTCTTTGGATCAAAAG 57.416 40.909 15.48 15.48 38.31 2.27
2633 2855 5.346181 AAACGGGTTTCTTTGGATCAAAA 57.654 34.783 0.00 0.00 32.75 2.44
2634 2856 5.112686 CAAAACGGGTTTCTTTGGATCAAA 58.887 37.500 0.00 0.00 31.45 2.69
2635 2857 4.688021 CAAAACGGGTTTCTTTGGATCAA 58.312 39.130 0.00 0.00 31.45 2.57
2636 2858 3.491792 GCAAAACGGGTTTCTTTGGATCA 60.492 43.478 0.00 0.00 31.98 2.92
2637 2859 3.057019 GCAAAACGGGTTTCTTTGGATC 58.943 45.455 0.00 0.00 31.98 3.36
2638 2860 2.432510 TGCAAAACGGGTTTCTTTGGAT 59.567 40.909 0.00 0.00 31.98 3.41
2639 2861 1.825474 TGCAAAACGGGTTTCTTTGGA 59.175 42.857 0.00 0.00 31.98 3.53
2640 2862 2.200899 CTGCAAAACGGGTTTCTTTGG 58.799 47.619 0.00 0.00 31.98 3.28
2641 2863 2.602660 CACTGCAAAACGGGTTTCTTTG 59.397 45.455 0.00 0.00 33.99 2.77
2642 2864 2.232696 ACACTGCAAAACGGGTTTCTTT 59.767 40.909 0.00 0.00 31.45 2.52
2643 2865 1.822371 ACACTGCAAAACGGGTTTCTT 59.178 42.857 0.00 0.00 31.45 2.52
2644 2866 1.404035 GACACTGCAAAACGGGTTTCT 59.596 47.619 0.00 0.00 31.45 2.52
2645 2867 1.535226 GGACACTGCAAAACGGGTTTC 60.535 52.381 0.00 0.00 31.45 2.78
2646 2868 0.458260 GGACACTGCAAAACGGGTTT 59.542 50.000 0.00 0.00 0.00 3.27
2647 2869 1.720694 CGGACACTGCAAAACGGGTT 61.721 55.000 0.00 0.00 0.00 4.11
2648 2870 2.184167 CGGACACTGCAAAACGGGT 61.184 57.895 0.00 0.00 0.00 5.28
2649 2871 2.637025 CGGACACTGCAAAACGGG 59.363 61.111 0.00 0.00 0.00 5.28
2650 2872 2.051345 GCGGACACTGCAAAACGG 60.051 61.111 0.00 0.00 0.00 4.44
2651 2873 2.425124 CGCGGACACTGCAAAACG 60.425 61.111 0.00 0.00 0.00 3.60
2652 2874 2.051345 CCGCGGACACTGCAAAAC 60.051 61.111 24.07 0.00 0.00 2.43
2653 2875 3.959975 GCCGCGGACACTGCAAAA 61.960 61.111 33.48 0.00 0.00 2.44
2657 2879 4.830765 TATGGCCGCGGACACTGC 62.831 66.667 40.88 16.08 35.10 4.40
2658 2880 2.586079 CTATGGCCGCGGACACTG 60.586 66.667 40.88 28.13 35.10 3.66
2659 2881 1.324740 TAACTATGGCCGCGGACACT 61.325 55.000 40.88 27.16 35.10 3.55
2660 2882 1.142314 TAACTATGGCCGCGGACAC 59.858 57.895 40.88 22.10 35.10 3.67
2661 2883 1.142314 GTAACTATGGCCGCGGACA 59.858 57.895 39.99 39.99 37.65 4.02
2662 2884 0.874607 CTGTAACTATGGCCGCGGAC 60.875 60.000 33.48 31.04 0.00 4.79
2663 2885 1.038681 TCTGTAACTATGGCCGCGGA 61.039 55.000 33.48 9.86 0.00 5.54
2664 2886 0.033504 ATCTGTAACTATGGCCGCGG 59.966 55.000 24.05 24.05 0.00 6.46
2665 2887 1.865865 AATCTGTAACTATGGCCGCG 58.134 50.000 0.00 0.00 0.00 6.46
2666 2888 4.124238 TGTAAATCTGTAACTATGGCCGC 58.876 43.478 0.00 0.00 0.00 6.53
2667 2889 7.956420 TTATGTAAATCTGTAACTATGGCCG 57.044 36.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.