Multiple sequence alignment - TraesCS4D01G144800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G144800 chr4D 100.000 7937 0 0 1 7937 133472524 133480460 0.000000e+00 14657.0
1 TraesCS4D01G144800 chr4A 95.687 5008 138 22 2885 7859 428158181 428153219 0.000000e+00 7980.0
2 TraesCS4D01G144800 chr4A 96.856 1145 31 1 1662 2806 428159321 428158182 0.000000e+00 1910.0
3 TraesCS4D01G144800 chr4A 91.081 953 46 10 297 1240 428160892 428159970 0.000000e+00 1253.0
4 TraesCS4D01G144800 chr4A 94.198 293 13 2 4 296 428161214 428160926 2.030000e-120 444.0
5 TraesCS4D01G144800 chr4A 87.903 248 7 11 1237 1483 428159890 428159665 3.650000e-68 270.0
6 TraesCS4D01G144800 chr4A 100.000 38 0 0 1572 1609 428159666 428159629 3.970000e-08 71.3
7 TraesCS4D01G144800 chr4B 97.097 3272 58 15 2885 6151 161556481 161553242 0.000000e+00 5481.0
8 TraesCS4D01G144800 chr4B 94.606 1817 62 16 6150 7937 161553160 161551351 0.000000e+00 2780.0
9 TraesCS4D01G144800 chr4B 95.870 1235 45 2 1572 2806 161557710 161556482 0.000000e+00 1993.0
10 TraesCS4D01G144800 chr4B 93.305 1195 45 10 297 1483 161558876 161557709 0.000000e+00 1731.0
11 TraesCS4D01G144800 chr4B 89.420 293 16 5 4 296 161559186 161558909 9.800000e-94 355.0
12 TraesCS4D01G144800 chr4B 97.059 68 2 0 1507 1574 45409123 45409056 1.810000e-21 115.0
13 TraesCS4D01G144800 chr6D 96.783 746 16 3 3225 3966 58841025 58840284 0.000000e+00 1238.0
14 TraesCS4D01G144800 chr6D 92.063 189 11 2 12 200 58841371 58841187 6.110000e-66 263.0
15 TraesCS4D01G144800 chr6D 92.982 57 4 0 1683 1739 411980998 411980942 5.100000e-12 84.2
16 TraesCS4D01G144800 chr6A 97.268 732 15 2 3235 3962 74823406 74822676 0.000000e+00 1236.0
17 TraesCS4D01G144800 chr6A 95.522 67 3 0 1507 1573 22197497 22197563 3.030000e-19 108.0
18 TraesCS4D01G144800 chr6A 83.333 96 12 2 1482 1573 47036487 47036582 1.420000e-12 86.1
19 TraesCS4D01G144800 chr6B 93.867 375 12 3 3588 3962 132412150 132411787 9.000000e-154 555.0
20 TraesCS4D01G144800 chr6B 97.806 319 7 0 3283 3601 132412736 132412418 1.160000e-152 551.0
21 TraesCS4D01G144800 chr6B 90.179 112 8 2 2786 2896 639915310 639915419 8.300000e-30 143.0
22 TraesCS4D01G144800 chr6B 92.308 91 7 0 1866 1956 687209250 687209160 6.460000e-26 130.0
23 TraesCS4D01G144800 chr6B 95.652 69 3 0 1506 1574 355121940 355122008 2.340000e-20 111.0
24 TraesCS4D01G144800 chr7A 86.188 362 38 10 4411 4768 64130765 64130412 1.620000e-101 381.0
25 TraesCS4D01G144800 chr7A 83.286 353 43 7 4805 5153 64130411 64130071 2.150000e-80 311.0
26 TraesCS4D01G144800 chr7A 92.929 99 7 0 2795 2893 80994173 80994075 2.310000e-30 145.0
27 TraesCS4D01G144800 chr5A 77.413 518 99 15 5216 5724 129113175 129112667 7.790000e-75 292.0
28 TraesCS4D01G144800 chr5A 94.595 74 4 0 1507 1580 688136306 688136233 1.810000e-21 115.0
29 TraesCS4D01G144800 chr5A 94.286 35 2 0 1480 1514 633982461 633982427 4.000000e-03 54.7
30 TraesCS4D01G144800 chr5B 76.938 516 105 12 5216 5724 131320658 131320150 1.690000e-71 281.0
31 TraesCS4D01G144800 chr5B 97.015 67 2 0 1507 1573 382948798 382948864 6.510000e-21 113.0
32 TraesCS4D01G144800 chr5B 95.714 70 3 0 1507 1576 603453768 603453699 6.510000e-21 113.0
33 TraesCS4D01G144800 chr5B 88.710 62 4 3 7852 7911 74429952 74429892 1.100000e-08 73.1
34 TraesCS4D01G144800 chr5B 100.000 31 0 0 1481 1511 382948756 382948786 3.090000e-04 58.4
35 TraesCS4D01G144800 chr5D 76.117 515 111 9 5216 5724 119006726 119006218 7.900000e-65 259.0
36 TraesCS4D01G144800 chr1A 89.677 155 13 3 1801 1955 281893616 281893767 2.260000e-45 195.0
37 TraesCS4D01G144800 chr1A 96.970 33 1 0 1474 1506 474447282 474447250 1.000000e-03 56.5
38 TraesCS4D01G144800 chr7D 87.821 156 16 2 1801 1956 24847967 24847815 6.330000e-41 180.0
39 TraesCS4D01G144800 chr7D 100.000 88 0 0 2799 2886 46795745 46795832 6.370000e-36 163.0
40 TraesCS4D01G144800 chr7D 98.876 89 1 0 2801 2889 146384143 146384055 8.240000e-35 159.0
41 TraesCS4D01G144800 chr7D 96.000 50 2 0 2137 2186 433731723 433731772 1.840000e-11 82.4
42 TraesCS4D01G144800 chr3D 91.538 130 11 0 2137 2266 85843161 85843290 6.330000e-41 180.0
43 TraesCS4D01G144800 chr3B 90.000 130 13 0 2137 2266 136060937 136061066 1.370000e-37 169.0
44 TraesCS4D01G144800 chr3B 93.407 91 6 0 1866 1956 657600116 657600026 1.390000e-27 135.0
45 TraesCS4D01G144800 chr3A 95.833 96 4 0 2795 2890 21405982 21406077 1.070000e-33 156.0
46 TraesCS4D01G144800 chr2B 95.745 94 4 0 2798 2891 428384577 428384670 1.380000e-32 152.0
47 TraesCS4D01G144800 chr1D 93.939 99 5 1 2794 2892 287427987 287427890 1.780000e-31 148.0
48 TraesCS4D01G144800 chr1D 94.792 96 4 1 2795 2889 460866594 460866499 1.780000e-31 148.0
49 TraesCS4D01G144800 chr1D 91.228 57 5 0 1683 1739 380543517 380543461 2.370000e-10 78.7
50 TraesCS4D01G144800 chr1B 86.992 123 10 5 2774 2894 196463118 196463236 5.000000e-27 134.0
51 TraesCS4D01G144800 chr1B 94.737 38 2 0 1683 1720 565679208 565679171 8.600000e-05 60.2
52 TraesCS4D01G144800 chr1B 92.683 41 2 1 1475 1514 317849340 317849300 3.090000e-04 58.4
53 TraesCS4D01G144800 chr1B 94.595 37 1 1 1475 1511 658067835 658067800 1.000000e-03 56.5
54 TraesCS4D01G144800 chr7B 97.059 68 2 0 1507 1574 327855918 327855985 1.810000e-21 115.0
55 TraesCS4D01G144800 chr7B 100.000 56 0 0 1515 1570 234910167 234910222 3.920000e-18 104.0
56 TraesCS4D01G144800 chr7B 88.136 59 6 1 1523 1581 115750974 115750917 1.430000e-07 69.4
57 TraesCS4D01G144800 chr2D 93.151 73 4 1 1506 1578 335687046 335687117 1.090000e-18 106.0
58 TraesCS4D01G144800 chr2D 96.774 31 1 0 1481 1511 585855325 585855295 1.400000e-02 52.8
59 TraesCS4D01G144800 chr2A 93.151 73 4 1 1506 1578 446069327 446069398 1.090000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G144800 chr4D 133472524 133480460 7936 False 14657.00 14657 100.0000 1 7937 1 chr4D.!!$F1 7936
1 TraesCS4D01G144800 chr4A 428153219 428161214 7995 True 1988.05 7980 94.2875 4 7859 6 chr4A.!!$R1 7855
2 TraesCS4D01G144800 chr4B 161551351 161559186 7835 True 2468.00 5481 94.0596 4 7937 5 chr4B.!!$R2 7933
3 TraesCS4D01G144800 chr6D 58840284 58841371 1087 True 750.50 1238 94.4230 12 3966 2 chr6D.!!$R2 3954
4 TraesCS4D01G144800 chr6A 74822676 74823406 730 True 1236.00 1236 97.2680 3235 3962 1 chr6A.!!$R1 727
5 TraesCS4D01G144800 chr6B 132411787 132412736 949 True 553.00 555 95.8365 3283 3962 2 chr6B.!!$R2 679
6 TraesCS4D01G144800 chr7A 64130071 64130765 694 True 346.00 381 84.7370 4411 5153 2 chr7A.!!$R2 742
7 TraesCS4D01G144800 chr5A 129112667 129113175 508 True 292.00 292 77.4130 5216 5724 1 chr5A.!!$R1 508
8 TraesCS4D01G144800 chr5B 131320150 131320658 508 True 281.00 281 76.9380 5216 5724 1 chr5B.!!$R2 508
9 TraesCS4D01G144800 chr5D 119006218 119006726 508 True 259.00 259 76.1170 5216 5724 1 chr5D.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 461 0.531974 TTTGAGACACGGGACACAGC 60.532 55.000 0.00 0.0 0.00 4.40 F
1442 1575 0.030504 TTGCATGTTCAGCACAACGG 59.969 50.000 0.00 0.0 42.54 4.44 F
2014 2403 0.322546 ACCTTGCCGAAGAACCATCC 60.323 55.000 0.00 0.0 0.00 3.51 F
2648 3037 1.069022 TCTGCAAAATGCTCTGTTCGC 60.069 47.619 3.78 0.0 45.31 4.70 F
3660 4334 0.743701 GGAGATGTCAGTGCTGCTGG 60.744 60.000 0.00 0.0 45.08 4.85 F
5342 6021 0.898320 CGAGGTTGTGGGAGACAGAT 59.102 55.000 0.00 0.0 35.44 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2403 0.462047 CAACCCGGAATTCCTCCTCG 60.462 60.000 22.05 8.37 42.85 4.63 R
2396 2785 1.279496 AGTGCAGTATGAGGCAGGAA 58.721 50.000 0.00 0.00 41.35 3.36 R
3660 4334 1.090052 GCTATCACCGTTCACCAGCC 61.090 60.000 0.00 0.00 0.00 4.85 R
4463 5139 1.592669 CCTCCGCTGCAGTAATCGG 60.593 63.158 20.53 20.53 42.96 4.18 R
5646 6331 0.590195 GCTCAACACTGGCAACTCTG 59.410 55.000 0.00 0.00 37.61 3.35 R
7191 7988 1.272807 TACCCAGCTTCCACAGGTAC 58.727 55.000 0.00 0.00 31.89 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 3.347216 CACGTTTCCCTTCTCAATCCAT 58.653 45.455 0.00 0.00 0.00 3.41
170 171 5.352643 AACAAATTAGGCACAACTCGTAC 57.647 39.130 0.00 0.00 0.00 3.67
171 172 3.430895 ACAAATTAGGCACAACTCGTACG 59.569 43.478 9.53 9.53 0.00 3.67
172 173 3.308438 AATTAGGCACAACTCGTACGT 57.692 42.857 16.05 0.00 0.00 3.57
173 174 4.439305 AATTAGGCACAACTCGTACGTA 57.561 40.909 16.05 0.00 0.00 3.57
174 175 3.913548 TTAGGCACAACTCGTACGTAA 57.086 42.857 16.05 0.08 0.00 3.18
175 176 2.798976 AGGCACAACTCGTACGTAAA 57.201 45.000 16.05 0.00 0.00 2.01
317 351 6.019237 TGTTACTTGTTTATGTCGCGTAAACA 60.019 34.615 22.24 22.24 46.97 2.83
322 356 6.230849 TGTTTATGTCGCGTAAACATTCTT 57.769 33.333 22.24 3.28 45.16 2.52
384 418 5.374142 GCAACCAATATTGCGTATGTTTG 57.626 39.130 10.11 5.85 45.08 2.93
427 461 0.531974 TTTGAGACACGGGACACAGC 60.532 55.000 0.00 0.00 0.00 4.40
485 519 5.300752 ACATCTAGCCAAATCTCGGTAATG 58.699 41.667 0.00 0.00 0.00 1.90
529 563 3.439476 TCGCTCGAGTTAGCTTAGAGTTT 59.561 43.478 15.13 0.00 40.49 2.66
557 591 2.484264 ACCAATCTCTGTGCGTTTAAGC 59.516 45.455 0.00 0.00 37.71 3.09
568 602 2.885266 TGCGTTTAAGCCCACACATTTA 59.115 40.909 0.00 0.00 36.02 1.40
609 643 3.544651 CACTGCGAAATACACAACACAG 58.455 45.455 0.00 0.00 0.00 3.66
998 1041 1.119574 GCTGACCCGGGGCTTCTATA 61.120 60.000 30.93 4.29 0.00 1.31
999 1042 1.645710 CTGACCCGGGGCTTCTATAT 58.354 55.000 30.93 0.00 0.00 0.86
1000 1043 2.816411 CTGACCCGGGGCTTCTATATA 58.184 52.381 30.93 2.41 0.00 0.86
1001 1044 3.375699 CTGACCCGGGGCTTCTATATAT 58.624 50.000 30.93 0.00 0.00 0.86
1002 1045 3.104512 TGACCCGGGGCTTCTATATATG 58.895 50.000 30.93 0.00 0.00 1.78
1003 1046 2.434702 GACCCGGGGCTTCTATATATGG 59.565 54.545 27.92 0.00 0.00 2.74
1004 1047 1.141053 CCCGGGGCTTCTATATATGGC 59.859 57.143 14.71 0.00 0.00 4.40
1106 1149 1.602771 GAGGGGGTGTAGGTGAAGC 59.397 63.158 0.00 0.00 0.00 3.86
1108 1151 2.267961 GGGGTGTAGGTGAAGCGG 59.732 66.667 0.00 0.00 0.00 5.52
1171 1214 1.227853 GTGGCCGGTGAGTTGTTCT 60.228 57.895 1.90 0.00 0.00 3.01
1172 1215 1.070786 TGGCCGGTGAGTTGTTCTC 59.929 57.895 1.90 0.00 43.03 2.87
1173 1216 1.371558 GGCCGGTGAGTTGTTCTCT 59.628 57.895 1.90 0.00 43.13 3.10
1174 1217 0.250338 GGCCGGTGAGTTGTTCTCTT 60.250 55.000 1.90 0.00 43.13 2.85
1175 1218 0.868406 GCCGGTGAGTTGTTCTCTTG 59.132 55.000 1.90 0.00 43.13 3.02
1402 1535 1.086696 CCACACCTTTAGCCGACATG 58.913 55.000 0.00 0.00 0.00 3.21
1442 1575 0.030504 TTGCATGTTCAGCACAACGG 59.969 50.000 0.00 0.00 42.54 4.44
1481 1615 2.375509 ACCGGAAGTGGAGGAAAGAATT 59.624 45.455 9.46 0.00 0.00 2.17
1482 1616 3.585732 ACCGGAAGTGGAGGAAAGAATTA 59.414 43.478 9.46 0.00 0.00 1.40
1483 1617 3.939592 CCGGAAGTGGAGGAAAGAATTAC 59.060 47.826 0.00 0.00 0.00 1.89
1484 1618 4.323562 CCGGAAGTGGAGGAAAGAATTACT 60.324 45.833 0.00 0.00 30.10 2.24
1485 1619 4.870991 CGGAAGTGGAGGAAAGAATTACTC 59.129 45.833 0.00 0.00 44.58 2.59
1491 1625 4.061357 GAGGAAAGAATTACTCCCTCCG 57.939 50.000 0.00 0.00 40.17 4.63
1492 1626 3.451540 GAGGAAAGAATTACTCCCTCCGT 59.548 47.826 0.00 0.00 40.17 4.69
1493 1627 3.844804 AGGAAAGAATTACTCCCTCCGTT 59.155 43.478 0.00 0.00 31.30 4.44
1494 1628 4.081031 AGGAAAGAATTACTCCCTCCGTTC 60.081 45.833 0.00 0.00 31.30 3.95
1495 1629 4.323257 GGAAAGAATTACTCCCTCCGTTCA 60.323 45.833 0.00 0.00 0.00 3.18
1496 1630 3.889520 AGAATTACTCCCTCCGTTCAC 57.110 47.619 0.00 0.00 0.00 3.18
1497 1631 3.442076 AGAATTACTCCCTCCGTTCACT 58.558 45.455 0.00 0.00 0.00 3.41
1498 1632 3.838903 AGAATTACTCCCTCCGTTCACTT 59.161 43.478 0.00 0.00 0.00 3.16
1499 1633 4.286291 AGAATTACTCCCTCCGTTCACTTT 59.714 41.667 0.00 0.00 0.00 2.66
1500 1634 4.635699 ATTACTCCCTCCGTTCACTTTT 57.364 40.909 0.00 0.00 0.00 2.27
1501 1635 5.750352 ATTACTCCCTCCGTTCACTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
1502 1636 5.750352 TTACTCCCTCCGTTCACTTTTAT 57.250 39.130 0.00 0.00 0.00 1.40
1503 1637 6.855763 TTACTCCCTCCGTTCACTTTTATA 57.144 37.500 0.00 0.00 0.00 0.98
1504 1638 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
1505 1639 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
1506 1640 5.482878 ACTCCCTCCGTTCACTTTTATAAGA 59.517 40.000 0.00 0.00 35.30 2.10
1507 1641 5.727434 TCCCTCCGTTCACTTTTATAAGAC 58.273 41.667 0.00 0.00 35.30 3.01
1508 1642 5.246656 TCCCTCCGTTCACTTTTATAAGACA 59.753 40.000 0.00 0.00 35.30 3.41
1509 1643 6.070424 TCCCTCCGTTCACTTTTATAAGACAT 60.070 38.462 0.00 0.00 35.30 3.06
1510 1644 6.598064 CCCTCCGTTCACTTTTATAAGACATT 59.402 38.462 0.00 0.00 35.30 2.71
1511 1645 7.414098 CCCTCCGTTCACTTTTATAAGACATTG 60.414 40.741 0.00 0.00 35.30 2.82
1512 1646 7.333423 CCTCCGTTCACTTTTATAAGACATTGA 59.667 37.037 0.00 0.00 35.30 2.57
1513 1647 8.610248 TCCGTTCACTTTTATAAGACATTGAA 57.390 30.769 0.00 0.00 35.30 2.69
1514 1648 8.500773 TCCGTTCACTTTTATAAGACATTGAAC 58.499 33.333 12.85 12.85 38.73 3.18
1515 1649 8.504005 CCGTTCACTTTTATAAGACATTGAACT 58.496 33.333 17.14 0.00 39.30 3.01
1516 1650 9.318041 CGTTCACTTTTATAAGACATTGAACTG 57.682 33.333 17.14 11.16 39.30 3.16
1523 1657 9.757227 TTTTATAAGACATTGAACTGTTTTGGG 57.243 29.630 0.00 0.00 0.00 4.12
1524 1658 6.976934 ATAAGACATTGAACTGTTTTGGGT 57.023 33.333 0.00 0.00 0.00 4.51
1525 1659 4.654091 AGACATTGAACTGTTTTGGGTG 57.346 40.909 0.00 0.00 0.00 4.61
1526 1660 4.277476 AGACATTGAACTGTTTTGGGTGA 58.723 39.130 0.00 0.00 0.00 4.02
1527 1661 4.895297 AGACATTGAACTGTTTTGGGTGAT 59.105 37.500 0.00 0.00 0.00 3.06
1528 1662 4.947645 ACATTGAACTGTTTTGGGTGATG 58.052 39.130 0.00 0.00 0.00 3.07
1529 1663 4.405358 ACATTGAACTGTTTTGGGTGATGT 59.595 37.500 0.00 0.00 0.00 3.06
1530 1664 4.647424 TTGAACTGTTTTGGGTGATGTC 57.353 40.909 0.00 0.00 0.00 3.06
1531 1665 3.897239 TGAACTGTTTTGGGTGATGTCT 58.103 40.909 0.00 0.00 0.00 3.41
1532 1666 3.631686 TGAACTGTTTTGGGTGATGTCTG 59.368 43.478 0.00 0.00 0.00 3.51
1533 1667 3.576078 ACTGTTTTGGGTGATGTCTGA 57.424 42.857 0.00 0.00 0.00 3.27
1534 1668 3.897239 ACTGTTTTGGGTGATGTCTGAA 58.103 40.909 0.00 0.00 0.00 3.02
1535 1669 4.473444 ACTGTTTTGGGTGATGTCTGAAT 58.527 39.130 0.00 0.00 0.00 2.57
1536 1670 4.895297 ACTGTTTTGGGTGATGTCTGAATT 59.105 37.500 0.00 0.00 0.00 2.17
1537 1671 5.199024 TGTTTTGGGTGATGTCTGAATTG 57.801 39.130 0.00 0.00 0.00 2.32
1538 1672 4.648762 TGTTTTGGGTGATGTCTGAATTGT 59.351 37.500 0.00 0.00 0.00 2.71
1539 1673 5.221224 TGTTTTGGGTGATGTCTGAATTGTC 60.221 40.000 0.00 0.00 0.00 3.18
1540 1674 4.371624 TTGGGTGATGTCTGAATTGTCT 57.628 40.909 0.00 0.00 0.00 3.41
1541 1675 5.497464 TTGGGTGATGTCTGAATTGTCTA 57.503 39.130 0.00 0.00 0.00 2.59
1542 1676 4.832248 TGGGTGATGTCTGAATTGTCTAC 58.168 43.478 0.00 0.00 0.00 2.59
1543 1677 4.285775 TGGGTGATGTCTGAATTGTCTACA 59.714 41.667 0.00 0.00 0.00 2.74
1544 1678 5.221823 TGGGTGATGTCTGAATTGTCTACAA 60.222 40.000 0.00 0.00 40.51 2.41
1545 1679 5.352569 GGGTGATGTCTGAATTGTCTACAAG 59.647 44.000 1.62 0.00 39.47 3.16
1546 1680 5.352569 GGTGATGTCTGAATTGTCTACAAGG 59.647 44.000 1.62 0.00 39.47 3.61
1547 1681 5.934625 GTGATGTCTGAATTGTCTACAAGGT 59.065 40.000 1.62 0.00 39.47 3.50
1548 1682 6.091441 GTGATGTCTGAATTGTCTACAAGGTC 59.909 42.308 1.62 2.72 39.47 3.85
1549 1683 5.808366 TGTCTGAATTGTCTACAAGGTCT 57.192 39.130 1.62 0.00 39.47 3.85
1550 1684 6.174720 TGTCTGAATTGTCTACAAGGTCTT 57.825 37.500 1.62 0.00 39.47 3.01
1551 1685 7.297936 TGTCTGAATTGTCTACAAGGTCTTA 57.702 36.000 1.62 0.00 39.47 2.10
1552 1686 7.907389 TGTCTGAATTGTCTACAAGGTCTTAT 58.093 34.615 1.62 0.00 39.47 1.73
1553 1687 9.031537 TGTCTGAATTGTCTACAAGGTCTTATA 57.968 33.333 1.62 0.00 39.47 0.98
1554 1688 9.871238 GTCTGAATTGTCTACAAGGTCTTATAA 57.129 33.333 1.62 0.00 39.47 0.98
1562 1696 9.485206 TGTCTACAAGGTCTTATAAAAGTGAAC 57.515 33.333 0.00 0.00 34.13 3.18
1563 1697 9.485206 GTCTACAAGGTCTTATAAAAGTGAACA 57.515 33.333 0.00 0.00 34.13 3.18
1564 1698 9.706691 TCTACAAGGTCTTATAAAAGTGAACAG 57.293 33.333 0.00 0.00 34.13 3.16
1565 1699 9.706691 CTACAAGGTCTTATAAAAGTGAACAGA 57.293 33.333 0.00 0.00 34.13 3.41
1566 1700 8.608844 ACAAGGTCTTATAAAAGTGAACAGAG 57.391 34.615 0.00 0.00 34.13 3.35
1567 1701 7.661847 ACAAGGTCTTATAAAAGTGAACAGAGG 59.338 37.037 0.00 0.00 34.13 3.69
1568 1702 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
1569 1703 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
1570 1704 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
1613 1747 8.246871 TCGATAATAAGATGATCAGATGACACC 58.753 37.037 0.09 0.00 0.00 4.16
1719 2108 6.549912 TGAATTTCGCATTCATGATCTAGG 57.450 37.500 0.00 0.00 33.55 3.02
1724 2113 5.728637 TCGCATTCATGATCTAGGTGTAT 57.271 39.130 0.00 0.00 0.00 2.29
1725 2114 6.101650 TCGCATTCATGATCTAGGTGTATT 57.898 37.500 0.00 0.00 0.00 1.89
1764 2153 9.478019 GACGACAAAATGTAATCTCATTAAGTG 57.522 33.333 0.00 0.00 37.09 3.16
1819 2208 3.276857 TCAGAATTCAAGCATCAGCCTC 58.723 45.455 8.44 0.00 43.56 4.70
1824 2213 1.273759 TCAAGCATCAGCCTCTCAGT 58.726 50.000 0.00 0.00 43.56 3.41
1825 2214 2.460669 TCAAGCATCAGCCTCTCAGTA 58.539 47.619 0.00 0.00 43.56 2.74
1826 2215 2.833943 TCAAGCATCAGCCTCTCAGTAA 59.166 45.455 0.00 0.00 43.56 2.24
1827 2216 3.453717 TCAAGCATCAGCCTCTCAGTAAT 59.546 43.478 0.00 0.00 43.56 1.89
1828 2217 4.651045 TCAAGCATCAGCCTCTCAGTAATA 59.349 41.667 0.00 0.00 43.56 0.98
1839 2228 9.250624 CAGCCTCTCAGTAATATAACTGTTAAC 57.749 37.037 4.11 0.00 45.78 2.01
1850 2239 8.788325 AATATAACTGTTAACCTGAACACCTC 57.212 34.615 4.11 0.00 34.40 3.85
1895 2284 4.444388 TCGTCGCTAACATATCTGAATTGC 59.556 41.667 0.00 0.00 0.00 3.56
1902 2291 7.375280 CGCTAACATATCTGAATTGCTTGAAAG 59.625 37.037 0.00 0.00 0.00 2.62
1956 2345 2.592102 AGAAGGAATGAAGCAGCCAA 57.408 45.000 0.00 0.00 0.00 4.52
2014 2403 0.322546 ACCTTGCCGAAGAACCATCC 60.323 55.000 0.00 0.00 0.00 3.51
2252 2641 5.242434 TGTGCATACCAGTACTTCGAAAAT 58.758 37.500 0.00 0.00 0.00 1.82
2396 2785 5.240844 GGGAGTACAGTTTTGCAGTGTTAAT 59.759 40.000 0.00 0.00 39.91 1.40
2574 2963 6.205464 CCTCAAGTCATTTGCTGAAACTAAGA 59.795 38.462 0.00 0.00 36.70 2.10
2648 3037 1.069022 TCTGCAAAATGCTCTGTTCGC 60.069 47.619 3.78 0.00 45.31 4.70
2681 3070 3.793797 TTTATGAAGGCGATGACGAGA 57.206 42.857 0.00 0.00 42.66 4.04
2719 3108 2.030562 CCGGGATGGCGTATCACC 59.969 66.667 0.00 0.00 35.70 4.02
2807 3196 9.886132 TTCAAAGAAATGATAGTTAGTACTCCC 57.114 33.333 0.00 0.00 35.78 4.30
2808 3197 9.268282 TCAAAGAAATGATAGTTAGTACTCCCT 57.732 33.333 0.00 0.00 35.78 4.20
2809 3198 9.535878 CAAAGAAATGATAGTTAGTACTCCCTC 57.464 37.037 0.00 0.00 35.78 4.30
2810 3199 7.842887 AGAAATGATAGTTAGTACTCCCTCC 57.157 40.000 0.00 0.00 35.78 4.30
2811 3200 6.490721 AGAAATGATAGTTAGTACTCCCTCCG 59.509 42.308 0.00 0.00 35.78 4.63
2812 3201 4.785346 TGATAGTTAGTACTCCCTCCGT 57.215 45.455 0.00 0.00 35.78 4.69
2813 3202 5.894298 TGATAGTTAGTACTCCCTCCGTA 57.106 43.478 0.00 0.00 35.78 4.02
2814 3203 6.252599 TGATAGTTAGTACTCCCTCCGTAA 57.747 41.667 0.00 0.00 35.78 3.18
2815 3204 6.662755 TGATAGTTAGTACTCCCTCCGTAAA 58.337 40.000 0.00 0.00 35.78 2.01
2816 3205 6.543831 TGATAGTTAGTACTCCCTCCGTAAAC 59.456 42.308 0.00 0.00 35.78 2.01
2817 3206 4.928263 AGTTAGTACTCCCTCCGTAAACT 58.072 43.478 0.00 0.00 0.00 2.66
2818 3207 6.067217 AGTTAGTACTCCCTCCGTAAACTA 57.933 41.667 0.00 0.00 0.00 2.24
2819 3208 6.485171 AGTTAGTACTCCCTCCGTAAACTAA 58.515 40.000 0.00 0.00 0.00 2.24
2820 3209 7.122048 AGTTAGTACTCCCTCCGTAAACTAAT 58.878 38.462 0.00 0.00 0.00 1.73
2821 3210 8.275040 AGTTAGTACTCCCTCCGTAAACTAATA 58.725 37.037 0.00 0.00 0.00 0.98
2822 3211 9.072375 GTTAGTACTCCCTCCGTAAACTAATAT 57.928 37.037 0.00 0.00 0.00 1.28
2825 3214 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2826 3215 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2827 3216 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2828 3217 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2829 3218 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2830 3219 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2831 3220 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2832 3221 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2833 3222 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2834 3223 9.450807 TCCGTAAACTAATATAAGAGCGTTTAC 57.549 33.333 10.96 10.96 41.12 2.01
2835 3224 9.236691 CCGTAAACTAATATAAGAGCGTTTACA 57.763 33.333 17.54 0.00 43.00 2.41
2849 3238 8.684973 AGAGCGTTTACATAACTACTTTAGTG 57.315 34.615 0.00 0.00 39.39 2.74
2850 3239 8.517878 AGAGCGTTTACATAACTACTTTAGTGA 58.482 33.333 0.00 0.00 39.39 3.41
2851 3240 9.298774 GAGCGTTTACATAACTACTTTAGTGAT 57.701 33.333 0.00 0.00 39.39 3.06
2852 3241 9.298774 AGCGTTTACATAACTACTTTAGTGATC 57.701 33.333 0.00 0.00 39.39 2.92
2853 3242 9.298774 GCGTTTACATAACTACTTTAGTGATCT 57.701 33.333 0.00 0.00 39.39 2.75
2880 3269 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
2881 3270 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
2882 3271 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
2883 3272 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
3001 3390 7.599621 CCATCAGAATGCTTGTTCAAACAATTA 59.400 33.333 8.64 2.40 40.88 1.40
3547 3940 3.167425 CGAAGAAGATCACGAGTCTGTG 58.833 50.000 8.30 8.30 41.28 3.66
3601 4275 8.896320 ACAACAGTTGTGTCACTAATAATGTA 57.104 30.769 18.49 0.00 43.48 2.29
3660 4334 0.743701 GGAGATGTCAGTGCTGCTGG 60.744 60.000 0.00 0.00 45.08 4.85
3691 4365 1.398390 GGTGATAGCGTGGCAAAAGAG 59.602 52.381 0.00 0.00 0.00 2.85
4151 4826 3.120060 GGTCTTCATGATTGCAGACACAC 60.120 47.826 21.20 6.11 44.81 3.82
4359 5034 7.968405 CGGAAATCTTTTACTTTCAATAGGGTG 59.032 37.037 0.00 0.00 33.89 4.61
4406 5081 4.154176 TGTACCTACAAGTTGCTCTACCA 58.846 43.478 1.81 0.00 32.40 3.25
4463 5139 6.979817 TGGCAATAAAATGACATGCATACTTC 59.020 34.615 0.00 0.00 38.73 3.01
4590 5267 7.516694 GGGAAGACCTTTACAATGGTACACAG 61.517 46.154 0.00 0.00 37.48 3.66
4747 5424 1.661463 TTCAAGCACAGAGGAGGGAT 58.339 50.000 0.00 0.00 0.00 3.85
4861 5538 7.124573 TCCTTTGCTGCTGAATTAGATACTA 57.875 36.000 0.00 0.00 0.00 1.82
5026 5703 2.981909 AGAGTTCCGGTCGCGTCA 60.982 61.111 5.77 0.00 0.00 4.35
5156 5835 3.139850 CAATGTTGCCTTTCATGCCAAA 58.860 40.909 0.00 0.00 0.00 3.28
5157 5836 2.237393 TGTTGCCTTTCATGCCAAAC 57.763 45.000 0.00 0.00 0.00 2.93
5158 5837 1.483827 TGTTGCCTTTCATGCCAAACA 59.516 42.857 0.00 0.00 0.00 2.83
5159 5838 2.093288 TGTTGCCTTTCATGCCAAACAA 60.093 40.909 0.00 0.00 0.00 2.83
5160 5839 2.941720 GTTGCCTTTCATGCCAAACAAA 59.058 40.909 0.00 0.00 0.00 2.83
5161 5840 3.272574 TGCCTTTCATGCCAAACAAAA 57.727 38.095 0.00 0.00 0.00 2.44
5162 5841 3.614092 TGCCTTTCATGCCAAACAAAAA 58.386 36.364 0.00 0.00 0.00 1.94
5163 5842 4.205587 TGCCTTTCATGCCAAACAAAAAT 58.794 34.783 0.00 0.00 0.00 1.82
5164 5843 5.371526 TGCCTTTCATGCCAAACAAAAATA 58.628 33.333 0.00 0.00 0.00 1.40
5165 5844 5.824624 TGCCTTTCATGCCAAACAAAAATAA 59.175 32.000 0.00 0.00 0.00 1.40
5166 5845 6.319658 TGCCTTTCATGCCAAACAAAAATAAA 59.680 30.769 0.00 0.00 0.00 1.40
5167 5846 7.014038 TGCCTTTCATGCCAAACAAAAATAAAT 59.986 29.630 0.00 0.00 0.00 1.40
5168 5847 8.510505 GCCTTTCATGCCAAACAAAAATAAATA 58.489 29.630 0.00 0.00 0.00 1.40
5182 5861 9.974980 ACAAAAATAAATAAATCTGAACGTGGT 57.025 25.926 0.00 0.00 0.00 4.16
5203 5882 5.059833 GGTATTTCTAGCTGATGGTTGAGG 58.940 45.833 0.00 0.00 0.00 3.86
5342 6021 0.898320 CGAGGTTGTGGGAGACAGAT 59.102 55.000 0.00 0.00 35.44 2.90
5485 6164 6.381707 AGGACTCTCTTGGTATCTCTAAAACC 59.618 42.308 0.00 0.00 0.00 3.27
5646 6331 3.427161 AGCACTTTGAAGTTTGCTGAC 57.573 42.857 7.73 0.00 37.04 3.51
5925 6610 4.701765 AGACATTAGGATCAGTCATGCAC 58.298 43.478 0.00 0.00 33.56 4.57
6121 6806 2.929398 GCCTGAAAGTTTGGTGTGTTTG 59.071 45.455 0.00 0.00 0.00 2.93
6177 6945 8.314021 TCTTGTAGCATGTATTATATGAGGGTG 58.686 37.037 4.74 0.00 0.00 4.61
6183 6951 5.147330 TGTATTATATGAGGGTGAAGGCG 57.853 43.478 0.00 0.00 0.00 5.52
6406 7178 0.379669 CATCTTCGTGGCTTGATGGC 59.620 55.000 0.00 0.00 42.18 4.40
6975 7747 1.067635 GCTGGATTTTGTTGCGACCAT 60.068 47.619 0.45 0.00 0.00 3.55
7073 7845 2.642807 CCTCTGGAAAGGGTTACTGGAA 59.357 50.000 0.00 0.00 32.35 3.53
7074 7846 3.073946 CCTCTGGAAAGGGTTACTGGAAA 59.926 47.826 0.00 0.00 32.35 3.13
7075 7847 4.327680 CTCTGGAAAGGGTTACTGGAAAG 58.672 47.826 0.00 0.00 0.00 2.62
7076 7848 3.073946 TCTGGAAAGGGTTACTGGAAAGG 59.926 47.826 0.00 0.00 0.00 3.11
7078 7850 2.109480 GGAAAGGGTTACTGGAAAGGGT 59.891 50.000 0.00 0.00 0.00 4.34
7079 7851 3.437491 GGAAAGGGTTACTGGAAAGGGTT 60.437 47.826 0.00 0.00 0.00 4.11
7080 7852 4.202599 GGAAAGGGTTACTGGAAAGGGTTA 60.203 45.833 0.00 0.00 0.00 2.85
7081 7853 5.387788 GAAAGGGTTACTGGAAAGGGTTAA 58.612 41.667 0.00 0.00 0.00 2.01
7082 7854 5.610429 AAGGGTTACTGGAAAGGGTTAAT 57.390 39.130 0.00 0.00 0.00 1.40
7083 7855 5.188988 AGGGTTACTGGAAAGGGTTAATC 57.811 43.478 0.00 0.00 0.00 1.75
7084 7856 4.604490 AGGGTTACTGGAAAGGGTTAATCA 59.396 41.667 0.00 0.00 0.00 2.57
7086 7858 5.955959 GGGTTACTGGAAAGGGTTAATCATT 59.044 40.000 0.00 0.00 0.00 2.57
7191 7988 5.256474 AGGAGGACTTGTTTTGGATATGTG 58.744 41.667 0.00 0.00 0.00 3.21
7197 7994 6.128007 GGACTTGTTTTGGATATGTGTACCTG 60.128 42.308 0.00 0.00 0.00 4.00
7315 8112 4.500205 CCAGTTGTTTGAGTTGCACATCAT 60.500 41.667 1.08 0.00 0.00 2.45
7341 8138 0.973632 ATTTCAACCTTTTCCCCGGC 59.026 50.000 0.00 0.00 0.00 6.13
7533 8330 1.327303 GGCCACACTTGATTTCCACA 58.673 50.000 0.00 0.00 0.00 4.17
7559 8356 4.751767 AAAAGAACAACAAATGGAGGCA 57.248 36.364 0.00 0.00 0.00 4.75
7572 8369 8.766994 ACAAATGGAGGCATGTATATTTTACT 57.233 30.769 0.00 0.00 0.00 2.24
7604 8402 2.416547 CTGCGAAACGACAATCCAATCT 59.583 45.455 0.00 0.00 0.00 2.40
7673 8472 8.169977 AGATAATTGCTCAAGACAAAACAAGA 57.830 30.769 0.00 0.00 0.00 3.02
7696 8495 5.123227 ACATACAATGAAGAATACCCACGG 58.877 41.667 0.00 0.00 0.00 4.94
7708 8507 1.285641 CCCACGGTGATGTGCAAAC 59.714 57.895 10.28 0.00 38.55 2.93
7751 8550 1.895020 TACAAAGCATCTCCGGCGGT 61.895 55.000 27.32 3.11 36.08 5.68
7762 8561 2.663196 CGGCGGTTCCCTTTCTCT 59.337 61.111 0.00 0.00 0.00 3.10
7778 8577 6.709397 CCCTTTCTCTAATAAAATCCCGGTAC 59.291 42.308 0.00 0.00 0.00 3.34
7809 8608 0.455815 GGCCATAAAAACTGCTCCCG 59.544 55.000 0.00 0.00 0.00 5.14
7845 8644 4.262249 CCCCAATAAATTGTTGGTGACGTT 60.262 41.667 18.07 0.00 43.65 3.99
7899 8698 8.282592 CGTTTTCTTCTCAAGACATCATTGTTA 58.717 33.333 0.00 0.00 37.23 2.41
7914 8714 3.513680 TTGTTATAGTCGCGTCACCAT 57.486 42.857 5.77 0.00 0.00 3.55
7920 8720 2.027073 GTCGCGTCACCATGCTTGA 61.027 57.895 5.77 0.00 31.59 3.02
7933 8733 2.673775 TGCTTGAAATGTTCTGGGGA 57.326 45.000 0.00 0.00 0.00 4.81
7936 8736 3.069443 TGCTTGAAATGTTCTGGGGAAAC 59.931 43.478 0.00 0.00 32.81 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.037160 GCTCCGGTTACCCCAAAAGA 59.963 55.000 0.00 0.00 0.00 2.52
1 2 0.037734 AGCTCCGGTTACCCCAAAAG 59.962 55.000 0.00 0.00 0.00 2.27
2 3 1.003464 GTAGCTCCGGTTACCCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
7 8 2.122527 GGAGTAGCTCCGGTTACCC 58.877 63.158 0.00 3.82 41.08 3.69
55 56 4.870123 TTGGTCAAATGGAGTCCAATTG 57.130 40.909 27.59 27.59 43.53 2.32
65 66 7.228706 AGTTGTAGTAAGACTTTGGTCAAATGG 59.771 37.037 0.00 0.00 44.36 3.16
139 140 7.227116 AGTTGTGCCTAATTTGTTTACTTCGTA 59.773 33.333 0.00 0.00 0.00 3.43
317 351 4.579647 AATAACGTGGTACCCCAAGAAT 57.420 40.909 10.07 0.00 44.15 2.40
322 356 2.268107 AGGAAATAACGTGGTACCCCA 58.732 47.619 10.07 0.00 38.87 4.96
370 404 5.007234 CGATCTTTCCCAAACATACGCAATA 59.993 40.000 0.00 0.00 0.00 1.90
380 414 4.253685 TCTGTCATCGATCTTTCCCAAAC 58.746 43.478 0.00 0.00 0.00 2.93
383 417 5.539955 TGATATCTGTCATCGATCTTTCCCA 59.460 40.000 3.98 0.00 0.00 4.37
384 418 6.030548 TGATATCTGTCATCGATCTTTCCC 57.969 41.667 3.98 0.00 0.00 3.97
427 461 4.944962 TCTCATTAATTTGGACGCACAG 57.055 40.909 0.00 0.00 0.00 3.66
465 499 3.133901 TGCATTACCGAGATTTGGCTAGA 59.866 43.478 0.00 0.00 0.00 2.43
485 519 0.307760 CTTCAGGGTGTGTTTCGTGC 59.692 55.000 0.00 0.00 0.00 5.34
529 563 1.476891 GCACAGAGATTGGTAGACGGA 59.523 52.381 0.00 0.00 0.00 4.69
557 591 5.482163 AAGATTTTGGGTAAATGTGTGGG 57.518 39.130 0.00 0.00 36.59 4.61
568 602 3.194755 GTGCCGGAATAAAGATTTTGGGT 59.805 43.478 5.05 0.00 0.00 4.51
832 874 2.582493 CCAAATGGTGGTGGTGGCC 61.582 63.158 0.00 0.00 43.20 5.36
833 875 3.059099 CCAAATGGTGGTGGTGGC 58.941 61.111 0.00 0.00 43.20 5.01
1106 1149 2.297895 TTCCTCCCCATCACCACCG 61.298 63.158 0.00 0.00 0.00 4.94
1108 1151 0.625849 ATGTTCCTCCCCATCACCAC 59.374 55.000 0.00 0.00 0.00 4.16
1171 1214 0.693049 GGGAAGGAGCCAAGACAAGA 59.307 55.000 0.00 0.00 0.00 3.02
1172 1215 0.695347 AGGGAAGGAGCCAAGACAAG 59.305 55.000 0.00 0.00 0.00 3.16
1173 1216 1.073923 GAAGGGAAGGAGCCAAGACAA 59.926 52.381 0.00 0.00 0.00 3.18
1174 1217 0.693049 GAAGGGAAGGAGCCAAGACA 59.307 55.000 0.00 0.00 0.00 3.41
1175 1218 0.988063 AGAAGGGAAGGAGCCAAGAC 59.012 55.000 0.00 0.00 0.00 3.01
1300 1427 8.009974 CAGAAAGAAAACACTAAACGTATGGAG 58.990 37.037 0.00 0.00 0.00 3.86
1350 1477 1.027357 CCATAGGCATTGGCACTGTC 58.973 55.000 13.20 0.57 43.71 3.51
1379 1512 1.265905 GTCGGCTAAAGGTGTGGTTTG 59.734 52.381 0.00 0.00 0.00 2.93
1402 1535 9.846248 ATGCAAAAGACTGTAATTCTTCATTAC 57.154 29.630 0.00 0.00 45.45 1.89
1442 1575 7.333672 ACTTCCGGTAACAAGTTAAGATGAATC 59.666 37.037 0.00 0.00 29.11 2.52
1481 1615 6.664816 TCTTATAAAAGTGAACGGAGGGAGTA 59.335 38.462 0.00 0.00 34.13 2.59
1482 1616 5.482878 TCTTATAAAAGTGAACGGAGGGAGT 59.517 40.000 0.00 0.00 34.13 3.85
1483 1617 5.811100 GTCTTATAAAAGTGAACGGAGGGAG 59.189 44.000 0.00 0.00 34.13 4.30
1484 1618 5.246656 TGTCTTATAAAAGTGAACGGAGGGA 59.753 40.000 0.00 0.00 34.13 4.20
1485 1619 5.484715 TGTCTTATAAAAGTGAACGGAGGG 58.515 41.667 0.00 0.00 34.13 4.30
1486 1620 7.333423 TCAATGTCTTATAAAAGTGAACGGAGG 59.667 37.037 0.00 0.00 34.13 4.30
1487 1621 8.251750 TCAATGTCTTATAAAAGTGAACGGAG 57.748 34.615 0.00 0.00 34.13 4.63
1488 1622 8.500773 GTTCAATGTCTTATAAAAGTGAACGGA 58.499 33.333 14.63 0.00 36.29 4.69
1489 1623 8.504005 AGTTCAATGTCTTATAAAAGTGAACGG 58.496 33.333 19.34 0.00 43.22 4.44
1490 1624 9.318041 CAGTTCAATGTCTTATAAAAGTGAACG 57.682 33.333 19.34 14.41 43.22 3.95
1497 1631 9.757227 CCCAAAACAGTTCAATGTCTTATAAAA 57.243 29.630 0.00 0.00 31.50 1.52
1498 1632 8.919145 ACCCAAAACAGTTCAATGTCTTATAAA 58.081 29.630 0.00 0.00 31.50 1.40
1499 1633 8.356657 CACCCAAAACAGTTCAATGTCTTATAA 58.643 33.333 0.00 0.00 31.50 0.98
1500 1634 7.721842 TCACCCAAAACAGTTCAATGTCTTATA 59.278 33.333 0.00 0.00 31.50 0.98
1501 1635 6.549364 TCACCCAAAACAGTTCAATGTCTTAT 59.451 34.615 0.00 0.00 31.50 1.73
1502 1636 5.888724 TCACCCAAAACAGTTCAATGTCTTA 59.111 36.000 0.00 0.00 31.50 2.10
1503 1637 4.709397 TCACCCAAAACAGTTCAATGTCTT 59.291 37.500 0.00 0.00 31.50 3.01
1504 1638 4.277476 TCACCCAAAACAGTTCAATGTCT 58.723 39.130 0.00 0.00 31.50 3.41
1505 1639 4.647424 TCACCCAAAACAGTTCAATGTC 57.353 40.909 0.00 0.00 31.50 3.06
1506 1640 4.405358 ACATCACCCAAAACAGTTCAATGT 59.595 37.500 0.00 0.00 33.96 2.71
1507 1641 4.947645 ACATCACCCAAAACAGTTCAATG 58.052 39.130 0.00 0.00 0.00 2.82
1508 1642 4.895297 AGACATCACCCAAAACAGTTCAAT 59.105 37.500 0.00 0.00 0.00 2.57
1509 1643 4.097741 CAGACATCACCCAAAACAGTTCAA 59.902 41.667 0.00 0.00 0.00 2.69
1510 1644 3.631686 CAGACATCACCCAAAACAGTTCA 59.368 43.478 0.00 0.00 0.00 3.18
1511 1645 3.882888 TCAGACATCACCCAAAACAGTTC 59.117 43.478 0.00 0.00 0.00 3.01
1512 1646 3.897239 TCAGACATCACCCAAAACAGTT 58.103 40.909 0.00 0.00 0.00 3.16
1513 1647 3.576078 TCAGACATCACCCAAAACAGT 57.424 42.857 0.00 0.00 0.00 3.55
1514 1648 5.221303 ACAATTCAGACATCACCCAAAACAG 60.221 40.000 0.00 0.00 0.00 3.16
1515 1649 4.648762 ACAATTCAGACATCACCCAAAACA 59.351 37.500 0.00 0.00 0.00 2.83
1516 1650 5.010012 AGACAATTCAGACATCACCCAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
1517 1651 5.139727 AGACAATTCAGACATCACCCAAAA 58.860 37.500 0.00 0.00 0.00 2.44
1518 1652 4.728772 AGACAATTCAGACATCACCCAAA 58.271 39.130 0.00 0.00 0.00 3.28
1519 1653 4.371624 AGACAATTCAGACATCACCCAA 57.628 40.909 0.00 0.00 0.00 4.12
1520 1654 4.285775 TGTAGACAATTCAGACATCACCCA 59.714 41.667 0.00 0.00 0.00 4.51
1521 1655 4.832248 TGTAGACAATTCAGACATCACCC 58.168 43.478 0.00 0.00 0.00 4.61
1522 1656 5.352569 CCTTGTAGACAATTCAGACATCACC 59.647 44.000 0.00 0.00 35.02 4.02
1523 1657 5.934625 ACCTTGTAGACAATTCAGACATCAC 59.065 40.000 0.00 0.00 35.02 3.06
1524 1658 6.014242 AGACCTTGTAGACAATTCAGACATCA 60.014 38.462 0.00 0.00 35.02 3.07
1525 1659 6.402222 AGACCTTGTAGACAATTCAGACATC 58.598 40.000 0.00 0.00 35.02 3.06
1526 1660 6.365970 AGACCTTGTAGACAATTCAGACAT 57.634 37.500 0.00 0.00 35.02 3.06
1527 1661 5.808366 AGACCTTGTAGACAATTCAGACA 57.192 39.130 0.00 0.00 35.02 3.41
1528 1662 9.871238 TTATAAGACCTTGTAGACAATTCAGAC 57.129 33.333 0.00 0.00 35.02 3.51
1536 1670 9.485206 GTTCACTTTTATAAGACCTTGTAGACA 57.515 33.333 0.00 0.00 35.30 3.41
1537 1671 9.485206 TGTTCACTTTTATAAGACCTTGTAGAC 57.515 33.333 0.00 0.00 35.30 2.59
1538 1672 9.706691 CTGTTCACTTTTATAAGACCTTGTAGA 57.293 33.333 0.00 0.00 35.30 2.59
1539 1673 9.706691 TCTGTTCACTTTTATAAGACCTTGTAG 57.293 33.333 0.00 0.00 35.30 2.74
1540 1674 9.706691 CTCTGTTCACTTTTATAAGACCTTGTA 57.293 33.333 0.00 0.00 35.30 2.41
1541 1675 7.661847 CCTCTGTTCACTTTTATAAGACCTTGT 59.338 37.037 0.00 0.00 35.30 3.16
1542 1676 7.119846 CCCTCTGTTCACTTTTATAAGACCTTG 59.880 40.741 0.00 0.00 35.30 3.61
1543 1677 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
1544 1678 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
1545 1679 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
1546 1680 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
1547 1681 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
1548 1682 8.750298 TCTACTCCCTCTGTTCACTTTTATAAG 58.250 37.037 0.00 0.00 37.40 1.73
1549 1683 8.660295 TCTACTCCCTCTGTTCACTTTTATAA 57.340 34.615 0.00 0.00 0.00 0.98
1550 1684 8.660295 TTCTACTCCCTCTGTTCACTTTTATA 57.340 34.615 0.00 0.00 0.00 0.98
1551 1685 7.455008 TCTTCTACTCCCTCTGTTCACTTTTAT 59.545 37.037 0.00 0.00 0.00 1.40
1552 1686 6.781014 TCTTCTACTCCCTCTGTTCACTTTTA 59.219 38.462 0.00 0.00 0.00 1.52
1553 1687 5.602978 TCTTCTACTCCCTCTGTTCACTTTT 59.397 40.000 0.00 0.00 0.00 2.27
1554 1688 5.148502 TCTTCTACTCCCTCTGTTCACTTT 58.851 41.667 0.00 0.00 0.00 2.66
1555 1689 4.742012 TCTTCTACTCCCTCTGTTCACTT 58.258 43.478 0.00 0.00 0.00 3.16
1556 1690 4.390129 TCTTCTACTCCCTCTGTTCACT 57.610 45.455 0.00 0.00 0.00 3.41
1557 1691 5.470047 TTTCTTCTACTCCCTCTGTTCAC 57.530 43.478 0.00 0.00 0.00 3.18
1558 1692 5.221661 GGTTTTCTTCTACTCCCTCTGTTCA 60.222 44.000 0.00 0.00 0.00 3.18
1559 1693 5.012251 AGGTTTTCTTCTACTCCCTCTGTTC 59.988 44.000 0.00 0.00 0.00 3.18
1560 1694 4.908481 AGGTTTTCTTCTACTCCCTCTGTT 59.092 41.667 0.00 0.00 0.00 3.16
1561 1695 4.494591 AGGTTTTCTTCTACTCCCTCTGT 58.505 43.478 0.00 0.00 0.00 3.41
1562 1696 5.221742 ACAAGGTTTTCTTCTACTCCCTCTG 60.222 44.000 0.00 0.00 32.41 3.35
1563 1697 4.908481 ACAAGGTTTTCTTCTACTCCCTCT 59.092 41.667 0.00 0.00 32.41 3.69
1564 1698 5.230323 ACAAGGTTTTCTTCTACTCCCTC 57.770 43.478 0.00 0.00 32.41 4.30
1565 1699 5.622180 GAACAAGGTTTTCTTCTACTCCCT 58.378 41.667 0.00 0.00 32.41 4.20
1566 1700 4.451435 CGAACAAGGTTTTCTTCTACTCCC 59.549 45.833 0.00 0.00 32.41 4.30
1567 1701 5.295152 TCGAACAAGGTTTTCTTCTACTCC 58.705 41.667 0.00 0.00 32.41 3.85
1568 1702 8.530269 TTATCGAACAAGGTTTTCTTCTACTC 57.470 34.615 0.00 0.00 32.41 2.59
1630 1764 7.361286 GGAAAAAGTTACTGAAGCATGGTCTAG 60.361 40.741 0.00 2.24 0.00 2.43
1676 2065 8.970859 AATTCAACTGGATAGATAGTTTCAGG 57.029 34.615 0.00 0.00 35.08 3.86
1719 2108 8.812147 TGTCGTCAATTGGATAGATAATACAC 57.188 34.615 5.42 0.00 0.00 2.90
1724 2113 9.173021 ACATTTTGTCGTCAATTGGATAGATAA 57.827 29.630 5.42 2.68 33.32 1.75
1725 2114 8.731275 ACATTTTGTCGTCAATTGGATAGATA 57.269 30.769 5.42 0.00 33.32 1.98
1768 2157 5.880887 TGGTACACAACACATTGAACACTTA 59.119 36.000 0.00 0.00 39.30 2.24
1824 2213 9.880157 GAGGTGTTCAGGTTAACAGTTATATTA 57.120 33.333 8.10 0.00 39.92 0.98
1825 2214 8.380099 TGAGGTGTTCAGGTTAACAGTTATATT 58.620 33.333 8.10 0.00 39.92 1.28
1826 2215 7.913789 TGAGGTGTTCAGGTTAACAGTTATAT 58.086 34.615 8.10 0.00 39.92 0.86
1827 2216 7.305813 TGAGGTGTTCAGGTTAACAGTTATA 57.694 36.000 8.10 0.00 39.92 0.98
1828 2217 6.182507 TGAGGTGTTCAGGTTAACAGTTAT 57.817 37.500 8.10 0.00 39.92 1.89
1839 2228 3.686726 GCTGTAGAATTGAGGTGTTCAGG 59.313 47.826 0.00 0.00 37.07 3.86
1895 2284 3.547468 CCGAAACAAGCACAACTTTCAAG 59.453 43.478 0.00 0.00 36.04 3.02
1902 2291 1.133407 TCAACCCGAAACAAGCACAAC 59.867 47.619 0.00 0.00 0.00 3.32
1956 2345 2.900546 CCTACTGTCCTTCTCAACCAGT 59.099 50.000 0.00 0.00 39.53 4.00
2014 2403 0.462047 CAACCCGGAATTCCTCCTCG 60.462 60.000 22.05 8.37 42.85 4.63
2396 2785 1.279496 AGTGCAGTATGAGGCAGGAA 58.721 50.000 0.00 0.00 41.35 3.36
2574 2963 9.535878 TTTAAATAAAGATTGTTTGCCGAGTTT 57.464 25.926 0.00 0.00 0.00 2.66
2648 3037 5.154222 GCCTTCATAAAAGGTTCGTTCTTG 58.846 41.667 5.76 0.00 39.60 3.02
2681 3070 2.491693 GAGTAGCTCAGCTGAGTGACTT 59.508 50.000 37.25 24.45 43.85 3.01
2719 3108 3.399330 TCAAGACCTAAAGTTTGCTCCG 58.601 45.455 0.00 0.00 0.00 4.63
2791 3180 4.785346 ACGGAGGGAGTACTAACTATCA 57.215 45.455 0.00 0.00 35.56 2.15
2792 3181 6.770303 AGTTTACGGAGGGAGTACTAACTATC 59.230 42.308 0.00 0.00 35.56 2.08
2806 3195 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2807 3196 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2808 3197 9.450807 GTAAACGCTCTTATATTAGTTTACGGA 57.549 33.333 11.51 0.00 41.74 4.69
2823 3212 9.136952 CACTAAAGTAGTTATGTAAACGCTCTT 57.863 33.333 0.00 0.00 36.76 2.85
2824 3213 8.517878 TCACTAAAGTAGTTATGTAAACGCTCT 58.482 33.333 0.00 0.00 36.76 4.09
2825 3214 8.679288 TCACTAAAGTAGTTATGTAAACGCTC 57.321 34.615 0.00 0.00 36.76 5.03
2826 3215 9.298774 GATCACTAAAGTAGTTATGTAAACGCT 57.701 33.333 0.00 0.00 36.76 5.07
2827 3216 9.298774 AGATCACTAAAGTAGTTATGTAAACGC 57.701 33.333 0.00 0.00 36.76 4.84
2854 3243 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
2855 3244 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
2856 3245 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
2857 3246 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
2858 3247 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2859 3248 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2868 3257 8.526147 GCAAATATATACTCCCTCCGTAAACTA 58.474 37.037 0.00 0.00 0.00 2.24
2869 3258 7.384477 GCAAATATATACTCCCTCCGTAAACT 58.616 38.462 0.00 0.00 0.00 2.66
2870 3259 6.309737 CGCAAATATATACTCCCTCCGTAAAC 59.690 42.308 0.00 0.00 0.00 2.01
2871 3260 6.392354 CGCAAATATATACTCCCTCCGTAAA 58.608 40.000 0.00 0.00 0.00 2.01
2872 3261 5.105635 CCGCAAATATATACTCCCTCCGTAA 60.106 44.000 0.00 0.00 0.00 3.18
2873 3262 4.400251 CCGCAAATATATACTCCCTCCGTA 59.600 45.833 0.00 0.00 0.00 4.02
2874 3263 3.194968 CCGCAAATATATACTCCCTCCGT 59.805 47.826 0.00 0.00 0.00 4.69
2875 3264 3.782046 CCGCAAATATATACTCCCTCCG 58.218 50.000 0.00 0.00 0.00 4.63
2876 3265 3.197983 AGCCGCAAATATATACTCCCTCC 59.802 47.826 0.00 0.00 0.00 4.30
2877 3266 4.160626 AGAGCCGCAAATATATACTCCCTC 59.839 45.833 0.00 0.00 0.00 4.30
2878 3267 4.097418 AGAGCCGCAAATATATACTCCCT 58.903 43.478 0.00 0.00 0.00 4.20
2879 3268 4.473477 AGAGCCGCAAATATATACTCCC 57.527 45.455 0.00 0.00 0.00 4.30
2880 3269 6.631962 AGTAAGAGCCGCAAATATATACTCC 58.368 40.000 0.00 0.00 0.00 3.85
2881 3270 7.813148 TGAAGTAAGAGCCGCAAATATATACTC 59.187 37.037 0.00 0.00 0.00 2.59
2882 3271 7.667557 TGAAGTAAGAGCCGCAAATATATACT 58.332 34.615 0.00 0.00 0.00 2.12
2883 3272 7.884816 TGAAGTAAGAGCCGCAAATATATAC 57.115 36.000 0.00 0.00 0.00 1.47
2946 3335 9.731819 TCTGAAGTAATCTACAATCGTGAATAC 57.268 33.333 0.00 0.00 0.00 1.89
2952 3341 6.377429 TGGAGTCTGAAGTAATCTACAATCGT 59.623 38.462 0.00 0.00 0.00 3.73
3547 3940 3.791887 CGTCCGTCTTCACATGATTAGTC 59.208 47.826 0.00 0.00 0.00 2.59
3601 4275 3.056821 TGTGATCTTCGTCGTCCATCTTT 60.057 43.478 0.00 0.00 0.00 2.52
3660 4334 1.090052 GCTATCACCGTTCACCAGCC 61.090 60.000 0.00 0.00 0.00 4.85
3691 4365 5.551233 TGTATATCTGCCTTTGCCTGTATC 58.449 41.667 0.00 0.00 36.33 2.24
3843 4518 8.375493 TCTATCCCAGACTTAACAGTACAAAT 57.625 34.615 0.00 0.00 31.22 2.32
3962 4637 7.649533 ACATAAGATGGCTTCAATGATTTCA 57.350 32.000 17.10 0.00 35.56 2.69
4151 4826 4.025401 GCGTTGCACCACGAAGGG 62.025 66.667 14.85 0.00 43.15 3.95
4445 5120 6.455360 AATCGGAAGTATGCATGTCATTTT 57.545 33.333 10.16 4.42 36.63 1.82
4463 5139 1.592669 CCTCCGCTGCAGTAATCGG 60.593 63.158 20.53 20.53 42.96 4.18
4590 5267 9.203421 CTAAAATTACCACAAAGATGGGAAAAC 57.797 33.333 0.00 0.00 46.00 2.43
4747 5424 9.755804 TGCACAGAAATTTCATAACAAAATGTA 57.244 25.926 19.99 2.23 0.00 2.29
4861 5538 5.478332 TGACTACTGACAGTCTGACATGATT 59.522 40.000 12.39 0.00 44.41 2.57
5156 5835 9.974980 ACCACGTTCAGATTTATTTATTTTTGT 57.025 25.926 0.00 0.00 0.00 2.83
5165 5844 8.827677 GCTAGAAATACCACGTTCAGATTTATT 58.172 33.333 0.00 0.00 0.00 1.40
5166 5845 8.204836 AGCTAGAAATACCACGTTCAGATTTAT 58.795 33.333 0.00 0.00 0.00 1.40
5167 5846 7.491372 CAGCTAGAAATACCACGTTCAGATTTA 59.509 37.037 0.00 0.00 0.00 1.40
5168 5847 6.313905 CAGCTAGAAATACCACGTTCAGATTT 59.686 38.462 0.00 0.00 0.00 2.17
5169 5848 5.812642 CAGCTAGAAATACCACGTTCAGATT 59.187 40.000 0.00 0.00 0.00 2.40
5170 5849 5.127194 TCAGCTAGAAATACCACGTTCAGAT 59.873 40.000 0.00 0.00 0.00 2.90
5171 5850 4.461431 TCAGCTAGAAATACCACGTTCAGA 59.539 41.667 0.00 0.00 0.00 3.27
5172 5851 4.744570 TCAGCTAGAAATACCACGTTCAG 58.255 43.478 0.00 0.00 0.00 3.02
5173 5852 4.794278 TCAGCTAGAAATACCACGTTCA 57.206 40.909 0.00 0.00 0.00 3.18
5174 5853 4.508124 CCATCAGCTAGAAATACCACGTTC 59.492 45.833 0.00 0.00 0.00 3.95
5175 5854 4.081087 ACCATCAGCTAGAAATACCACGTT 60.081 41.667 0.00 0.00 0.00 3.99
5176 5855 3.451178 ACCATCAGCTAGAAATACCACGT 59.549 43.478 0.00 0.00 0.00 4.49
5177 5856 4.060038 ACCATCAGCTAGAAATACCACG 57.940 45.455 0.00 0.00 0.00 4.94
5178 5857 5.428253 TCAACCATCAGCTAGAAATACCAC 58.572 41.667 0.00 0.00 0.00 4.16
5179 5858 5.396772 CCTCAACCATCAGCTAGAAATACCA 60.397 44.000 0.00 0.00 0.00 3.25
5180 5859 5.059833 CCTCAACCATCAGCTAGAAATACC 58.940 45.833 0.00 0.00 0.00 2.73
5181 5860 5.918608 TCCTCAACCATCAGCTAGAAATAC 58.081 41.667 0.00 0.00 0.00 1.89
5182 5861 6.560003 TTCCTCAACCATCAGCTAGAAATA 57.440 37.500 0.00 0.00 0.00 1.40
5183 5862 5.441718 TTCCTCAACCATCAGCTAGAAAT 57.558 39.130 0.00 0.00 0.00 2.17
5184 5863 4.908601 TTCCTCAACCATCAGCTAGAAA 57.091 40.909 0.00 0.00 0.00 2.52
5187 5866 2.877168 GCATTCCTCAACCATCAGCTAG 59.123 50.000 0.00 0.00 0.00 3.42
5203 5882 6.491394 TGTTACACAACTGTAAAGTGCATTC 58.509 36.000 0.00 0.00 43.13 2.67
5342 6021 2.363306 ATGTGTTGTGCCTCCTTCAA 57.637 45.000 0.00 0.00 0.00 2.69
5485 6164 3.016736 AGGTGCAAATTAAGGATGTCGG 58.983 45.455 0.00 0.00 0.00 4.79
5646 6331 0.590195 GCTCAACACTGGCAACTCTG 59.410 55.000 0.00 0.00 37.61 3.35
6177 6945 6.474102 TCATTTTTGTAAAACAGAACGCCTTC 59.526 34.615 0.00 0.00 0.00 3.46
6406 7178 1.864711 CGGGTATTGTCGCCATTACAG 59.135 52.381 1.55 0.00 31.85 2.74
6727 7499 6.306356 CAGTGCACAAACTTGATAATTGCTAC 59.694 38.462 21.04 0.00 0.00 3.58
6975 7747 3.071602 GCTATCTCTGGCCATGGTAAAGA 59.928 47.826 14.67 12.57 0.00 2.52
7073 7845 9.093458 GAATGGATGGATAAATGATTAACCCTT 57.907 33.333 0.00 0.00 34.03 3.95
7074 7846 8.233820 TGAATGGATGGATAAATGATTAACCCT 58.766 33.333 0.00 0.00 34.03 4.34
7075 7847 8.421249 TGAATGGATGGATAAATGATTAACCC 57.579 34.615 0.00 0.00 34.03 4.11
7082 7854 8.809066 GGAATGAATGAATGGATGGATAAATGA 58.191 33.333 0.00 0.00 0.00 2.57
7083 7855 8.590204 TGGAATGAATGAATGGATGGATAAATG 58.410 33.333 0.00 0.00 0.00 2.32
7084 7856 8.730093 TGGAATGAATGAATGGATGGATAAAT 57.270 30.769 0.00 0.00 0.00 1.40
7086 7858 8.730093 AATGGAATGAATGAATGGATGGATAA 57.270 30.769 0.00 0.00 0.00 1.75
7191 7988 1.272807 TACCCAGCTTCCACAGGTAC 58.727 55.000 0.00 0.00 31.89 3.34
7197 7994 5.652452 ACATAGAAAATTACCCAGCTTCCAC 59.348 40.000 0.00 0.00 0.00 4.02
7315 8112 4.348461 GGGGAAAAGGTTGAAATACCCAAA 59.652 41.667 0.00 0.00 39.08 3.28
7455 8252 2.622064 AGATACACCGATTCCAAGCC 57.378 50.000 0.00 0.00 0.00 4.35
7533 8330 6.290605 CCTCCATTTGTTGTTCTTTTTCCAT 58.709 36.000 0.00 0.00 0.00 3.41
7549 8346 7.233348 CCCAGTAAAATATACATGCCTCCATTT 59.767 37.037 0.00 0.00 0.00 2.32
7559 8356 7.764443 CAGCGCTATACCCAGTAAAATATACAT 59.236 37.037 10.99 0.00 0.00 2.29
7572 8369 0.808453 GTTTCGCAGCGCTATACCCA 60.808 55.000 10.99 0.00 0.00 4.51
7604 8402 2.290260 ACATCTTTCTCACCAATGCCGA 60.290 45.455 0.00 0.00 0.00 5.54
7673 8472 5.123227 CCGTGGGTATTCTTCATTGTATGT 58.877 41.667 0.00 0.00 0.00 2.29
7751 8550 6.069264 ACCGGGATTTTATTAGAGAAAGGGAA 60.069 38.462 6.32 0.00 0.00 3.97
7762 8561 5.218179 TCCTCCAGTACCGGGATTTTATTA 58.782 41.667 6.32 0.00 33.04 0.98
7778 8577 4.503714 TTTTATGGCCTAACTCCTCCAG 57.496 45.455 3.32 0.00 31.36 3.86
7809 8608 2.222227 ATTGGGGAAAGAGAACCTGC 57.778 50.000 0.00 0.00 0.00 4.85
7815 8614 6.603940 CCAACAATTTATTGGGGAAAGAGA 57.396 37.500 9.56 0.00 42.57 3.10
7845 8644 3.204119 CGCCGCCATCATCTGCAA 61.204 61.111 0.00 0.00 0.00 4.08
7871 8670 5.907197 TGATGTCTTGAGAAGAAAACGAC 57.093 39.130 0.00 0.00 39.67 4.34
7899 8698 0.175760 AAGCATGGTGACGCGACTAT 59.824 50.000 15.93 1.07 0.00 2.12
7914 8714 2.673775 TCCCCAGAACATTTCAAGCA 57.326 45.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.