Multiple sequence alignment - TraesCS4D01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G143100 chr4D 100.000 3778 0 0 1 3778 130464372 130468149 0.000000e+00 6977
1 TraesCS4D01G143100 chr4D 88.288 555 42 11 32 566 503268325 503268876 0.000000e+00 643
2 TraesCS4D01G143100 chr4A 96.984 1492 41 4 566 2055 436830119 436828630 0.000000e+00 2503
3 TraesCS4D01G143100 chr4A 85.394 1027 71 36 2788 3777 436828033 436827049 0.000000e+00 992
4 TraesCS4D01G143100 chr4A 95.525 514 14 2 2278 2791 436828573 436828069 0.000000e+00 813
5 TraesCS4D01G143100 chr4A 92.574 202 15 0 2064 2265 738842333 738842534 1.330000e-74 291
6 TraesCS4D01G143100 chrUn 97.877 1272 26 1 590 1860 53488585 53487314 0.000000e+00 2198
7 TraesCS4D01G143100 chrUn 89.364 959 35 19 2262 3164 53486827 53485880 0.000000e+00 1144
8 TraesCS4D01G143100 chrUn 97.892 332 6 1 590 920 53490572 53490241 1.180000e-159 573
9 TraesCS4D01G143100 chrUn 98.387 186 0 3 1886 2068 53487008 53486823 1.310000e-84 324
10 TraesCS4D01G143100 chr6A 94.571 571 24 2 3 566 228237138 228236568 0.000000e+00 876
11 TraesCS4D01G143100 chr6A 92.469 571 32 4 3 566 615685066 615684500 0.000000e+00 806
12 TraesCS4D01G143100 chr6A 87.689 528 37 13 65 566 442454589 442454064 1.170000e-164 590
13 TraesCS4D01G143100 chr5A 94.464 560 26 2 9 564 667122893 667123451 0.000000e+00 857
14 TraesCS4D01G143100 chr3B 87.946 589 44 11 1 564 156655941 156656527 0.000000e+00 669
15 TraesCS4D01G143100 chr3B 93.035 201 14 0 2064 2264 242041337 242041137 1.030000e-75 294
16 TraesCS4D01G143100 chr7B 86.762 559 47 11 34 567 746481483 746480927 6.980000e-167 597
17 TraesCS4D01G143100 chr7B 93.532 201 13 0 2064 2264 521121072 521120872 2.210000e-77 300
18 TraesCS4D01G143100 chr7B 91.943 211 15 2 2061 2269 255998977 255998767 1.030000e-75 294
19 TraesCS4D01G143100 chr3D 97.449 196 4 1 2066 2260 557154796 557154601 2.170000e-87 333
20 TraesCS4D01G143100 chr3D 78.469 209 27 10 3559 3759 560368178 560368376 1.840000e-23 121
21 TraesCS4D01G143100 chr2A 93.970 199 11 1 2062 2260 343510417 343510614 2.210000e-77 300
22 TraesCS4D01G143100 chr4B 93.103 203 14 0 2063 2265 172375485 172375283 7.930000e-77 298
23 TraesCS4D01G143100 chr5B 93.069 202 14 0 2064 2265 357160982 357161183 2.850000e-76 296
24 TraesCS4D01G143100 chr6B 92.611 203 15 0 2064 2266 335547871 335548073 3.690000e-75 292


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G143100 chr4D 130464372 130468149 3777 False 6977.00 6977 100.000000 1 3778 1 chr4D.!!$F1 3777
1 TraesCS4D01G143100 chr4D 503268325 503268876 551 False 643.00 643 88.288000 32 566 1 chr4D.!!$F2 534
2 TraesCS4D01G143100 chr4A 436827049 436830119 3070 True 1436.00 2503 92.634333 566 3777 3 chr4A.!!$R1 3211
3 TraesCS4D01G143100 chrUn 53485880 53490572 4692 True 1059.75 2198 95.880000 590 3164 4 chrUn.!!$R1 2574
4 TraesCS4D01G143100 chr6A 228236568 228237138 570 True 876.00 876 94.571000 3 566 1 chr6A.!!$R1 563
5 TraesCS4D01G143100 chr6A 615684500 615685066 566 True 806.00 806 92.469000 3 566 1 chr6A.!!$R3 563
6 TraesCS4D01G143100 chr6A 442454064 442454589 525 True 590.00 590 87.689000 65 566 1 chr6A.!!$R2 501
7 TraesCS4D01G143100 chr5A 667122893 667123451 558 False 857.00 857 94.464000 9 564 1 chr5A.!!$F1 555
8 TraesCS4D01G143100 chr3B 156655941 156656527 586 False 669.00 669 87.946000 1 564 1 chr3B.!!$F1 563
9 TraesCS4D01G143100 chr7B 746480927 746481483 556 True 597.00 597 86.762000 34 567 1 chr7B.!!$R3 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 95 0.457035 GGTTGCATTGCATCACGGAT 59.543 50.000 12.95 0.00 38.76 4.18 F
388 427 0.952984 GCTCGCCATGGCTAATCTCC 60.953 60.000 33.07 11.24 39.32 3.71 F
2087 3808 1.202348 GCCTTGTACAATGGAAGGTGC 59.798 52.381 21.28 7.67 38.85 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 2765 0.898326 TGACGTAGGGCTTGCTGAGA 60.898 55.0 0.00 0.0 0.00 3.27 R
2124 3845 0.036765 AAATAGACGCCGGTGCTTCA 60.037 50.0 16.69 0.0 38.18 3.02 R
3670 5475 0.179116 CGTGAGAGAGTGATGCCCAG 60.179 60.0 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 95 0.457035 GGTTGCATTGCATCACGGAT 59.543 50.000 12.95 0.00 38.76 4.18
200 205 1.145759 TTCATCGACGAGCGCCATTC 61.146 55.000 2.29 0.00 40.61 2.67
207 213 2.365068 CGAGCGCCATTCGTATCGG 61.365 63.158 2.29 0.00 41.97 4.18
388 427 0.952984 GCTCGCCATGGCTAATCTCC 60.953 60.000 33.07 11.24 39.32 3.71
500 543 1.227645 GCAGCCTGACACAGACACA 60.228 57.895 0.00 0.00 32.44 3.72
538 581 5.490717 AGGAGGCTTAAAAGAGAGGAAGATT 59.509 40.000 0.00 0.00 0.00 2.40
589 632 4.508662 CTCTTATTTCAAAGCCCTCGTCT 58.491 43.478 0.00 0.00 0.00 4.18
591 634 2.859165 ATTTCAAAGCCCTCGTCTCA 57.141 45.000 0.00 0.00 0.00 3.27
592 635 2.631160 TTTCAAAGCCCTCGTCTCAA 57.369 45.000 0.00 0.00 0.00 3.02
593 636 2.169832 TTCAAAGCCCTCGTCTCAAG 57.830 50.000 0.00 0.00 0.00 3.02
606 2005 3.006430 TCGTCTCAAGGAGCACAAATACA 59.994 43.478 0.00 0.00 0.00 2.29
708 2108 3.986572 GGTGAAGCATGTCATCTCTATCG 59.013 47.826 0.00 0.00 0.00 2.92
1116 2516 1.557443 CGTTCGACAGCTGGTTGTCC 61.557 60.000 19.93 0.02 43.56 4.02
1365 2765 3.772025 ACCGTGAGAAGATCTTCCTCAAT 59.228 43.478 28.01 12.28 40.33 2.57
2059 3780 4.806892 TGCATTATGGATGGAGGATGTTT 58.193 39.130 0.00 0.00 36.21 2.83
2061 3782 6.372104 TGCATTATGGATGGAGGATGTTTTA 58.628 36.000 0.00 0.00 36.21 1.52
2063 3784 7.510001 TGCATTATGGATGGAGGATGTTTTATT 59.490 33.333 0.00 0.00 36.21 1.40
2064 3785 9.023962 GCATTATGGATGGAGGATGTTTTATTA 57.976 33.333 0.00 0.00 36.21 0.98
2067 3788 9.586732 TTATGGATGGAGGATGTTTTATTAAGG 57.413 33.333 0.00 0.00 0.00 2.69
2068 3789 5.833131 TGGATGGAGGATGTTTTATTAAGGC 59.167 40.000 0.00 0.00 0.00 4.35
2069 3790 5.243954 GGATGGAGGATGTTTTATTAAGGCC 59.756 44.000 0.00 0.00 0.00 5.19
2070 3791 5.466127 TGGAGGATGTTTTATTAAGGCCT 57.534 39.130 0.00 0.00 0.00 5.19
2071 3792 5.837829 TGGAGGATGTTTTATTAAGGCCTT 58.162 37.500 24.18 24.18 0.00 4.35
2072 3793 5.656416 TGGAGGATGTTTTATTAAGGCCTTG 59.344 40.000 28.77 0.00 0.00 3.61
2073 3794 5.656859 GGAGGATGTTTTATTAAGGCCTTGT 59.343 40.000 28.77 18.23 0.00 3.16
2074 3795 6.831868 GGAGGATGTTTTATTAAGGCCTTGTA 59.168 38.462 28.77 17.19 0.00 2.41
2075 3796 7.201794 GGAGGATGTTTTATTAAGGCCTTGTAC 60.202 40.741 28.77 15.38 0.00 2.90
2076 3797 7.179269 AGGATGTTTTATTAAGGCCTTGTACA 58.821 34.615 28.77 19.83 0.00 2.90
2077 3798 7.672239 AGGATGTTTTATTAAGGCCTTGTACAA 59.328 33.333 28.77 14.62 0.00 2.41
2078 3799 8.474831 GGATGTTTTATTAAGGCCTTGTACAAT 58.525 33.333 28.77 20.48 0.00 2.71
2079 3800 9.301153 GATGTTTTATTAAGGCCTTGTACAATG 57.699 33.333 28.77 7.68 0.00 2.82
2080 3801 7.607250 TGTTTTATTAAGGCCTTGTACAATGG 58.393 34.615 28.77 13.26 0.00 3.16
2081 3802 7.451877 TGTTTTATTAAGGCCTTGTACAATGGA 59.548 33.333 28.77 9.79 0.00 3.41
2082 3803 8.308207 GTTTTATTAAGGCCTTGTACAATGGAA 58.692 33.333 28.77 11.10 0.00 3.53
2083 3804 7.639113 TTATTAAGGCCTTGTACAATGGAAG 57.361 36.000 28.77 6.44 0.00 3.46
2084 3805 2.514458 AGGCCTTGTACAATGGAAGG 57.486 50.000 21.28 14.79 39.51 3.46
2085 3806 1.710809 AGGCCTTGTACAATGGAAGGT 59.289 47.619 21.28 0.00 38.85 3.50
2086 3807 1.818674 GGCCTTGTACAATGGAAGGTG 59.181 52.381 21.28 4.72 38.85 4.00
2087 3808 1.202348 GCCTTGTACAATGGAAGGTGC 59.798 52.381 21.28 7.67 38.85 5.01
2088 3809 2.795329 CCTTGTACAATGGAAGGTGCT 58.205 47.619 9.13 0.00 32.94 4.40
2089 3810 3.157087 CCTTGTACAATGGAAGGTGCTT 58.843 45.455 9.13 0.00 32.94 3.91
2090 3811 4.331968 CCTTGTACAATGGAAGGTGCTTA 58.668 43.478 9.13 0.00 32.94 3.09
2091 3812 4.396166 CCTTGTACAATGGAAGGTGCTTAG 59.604 45.833 9.13 0.00 32.94 2.18
2092 3813 4.901197 TGTACAATGGAAGGTGCTTAGA 57.099 40.909 0.00 0.00 0.00 2.10
2093 3814 4.832248 TGTACAATGGAAGGTGCTTAGAG 58.168 43.478 0.00 0.00 0.00 2.43
2094 3815 3.356529 ACAATGGAAGGTGCTTAGAGG 57.643 47.619 0.00 0.00 0.00 3.69
2095 3816 2.025887 ACAATGGAAGGTGCTTAGAGGG 60.026 50.000 0.00 0.00 0.00 4.30
2096 3817 2.239654 CAATGGAAGGTGCTTAGAGGGA 59.760 50.000 0.00 0.00 0.00 4.20
2097 3818 2.270434 TGGAAGGTGCTTAGAGGGAT 57.730 50.000 0.00 0.00 0.00 3.85
2098 3819 1.839994 TGGAAGGTGCTTAGAGGGATG 59.160 52.381 0.00 0.00 0.00 3.51
2099 3820 1.475930 GGAAGGTGCTTAGAGGGATGC 60.476 57.143 0.00 0.00 0.00 3.91
2100 3821 1.488393 GAAGGTGCTTAGAGGGATGCT 59.512 52.381 0.00 0.00 0.00 3.79
2101 3822 1.589414 AGGTGCTTAGAGGGATGCTT 58.411 50.000 0.00 0.00 0.00 3.91
2102 3823 2.764269 AGGTGCTTAGAGGGATGCTTA 58.236 47.619 0.00 0.00 0.00 3.09
2103 3824 3.115390 AGGTGCTTAGAGGGATGCTTAA 58.885 45.455 0.00 0.00 0.00 1.85
2104 3825 3.523564 AGGTGCTTAGAGGGATGCTTAAA 59.476 43.478 0.00 0.00 0.00 1.52
2105 3826 4.018415 AGGTGCTTAGAGGGATGCTTAAAA 60.018 41.667 0.00 0.00 0.00 1.52
2106 3827 4.705023 GGTGCTTAGAGGGATGCTTAAAAA 59.295 41.667 0.00 0.00 0.00 1.94
2128 3849 7.780008 AAAAATAAACCGGGTTTTTCTGAAG 57.220 32.000 28.50 0.00 37.01 3.02
2129 3850 2.882927 AAACCGGGTTTTTCTGAAGC 57.117 45.000 19.22 0.00 31.10 3.86
2130 3851 1.770294 AACCGGGTTTTTCTGAAGCA 58.230 45.000 6.59 0.00 0.00 3.91
2131 3852 1.029681 ACCGGGTTTTTCTGAAGCAC 58.970 50.000 6.32 0.00 0.00 4.40
2132 3853 0.313987 CCGGGTTTTTCTGAAGCACC 59.686 55.000 10.25 10.25 0.00 5.01
2133 3854 0.040425 CGGGTTTTTCTGAAGCACCG 60.040 55.000 11.74 10.55 0.00 4.94
2134 3855 0.313987 GGGTTTTTCTGAAGCACCGG 59.686 55.000 0.00 0.00 0.00 5.28
2135 3856 0.318699 GGTTTTTCTGAAGCACCGGC 60.319 55.000 0.00 0.00 41.61 6.13
2138 3859 1.503818 TTTTCTGAAGCACCGGCGTC 61.504 55.000 6.01 0.00 46.89 5.19
2139 3860 2.377628 TTTCTGAAGCACCGGCGTCT 62.378 55.000 6.01 0.00 46.84 4.18
2140 3861 1.529152 TTCTGAAGCACCGGCGTCTA 61.529 55.000 6.01 0.00 46.84 2.59
2141 3862 1.141881 CTGAAGCACCGGCGTCTAT 59.858 57.895 6.01 0.00 46.84 1.98
2142 3863 0.460284 CTGAAGCACCGGCGTCTATT 60.460 55.000 6.01 0.00 46.84 1.73
2143 3864 0.036765 TGAAGCACCGGCGTCTATTT 60.037 50.000 6.01 0.00 46.84 1.40
2144 3865 1.609580 TGAAGCACCGGCGTCTATTTT 60.610 47.619 6.01 0.00 46.84 1.82
2145 3866 3.131456 TGAAGCACCGGCGTCTATTTTT 61.131 45.455 6.01 0.00 46.84 1.94
2146 3867 3.865302 TGAAGCACCGGCGTCTATTTTTA 60.865 43.478 6.01 0.00 46.84 1.52
2147 3868 5.159143 TGAAGCACCGGCGTCTATTTTTAT 61.159 41.667 6.01 0.00 46.84 1.40
2148 3869 5.911712 TGAAGCACCGGCGTCTATTTTTATA 60.912 40.000 6.01 0.00 46.84 0.98
2149 3870 4.385244 GCACCGGCGTCTATTTTTATAG 57.615 45.455 6.01 0.00 0.00 1.31
2150 3871 3.185797 GCACCGGCGTCTATTTTTATAGG 59.814 47.826 6.01 0.00 0.00 2.57
2151 3872 4.624015 CACCGGCGTCTATTTTTATAGGA 58.376 43.478 6.01 0.00 0.00 2.94
2152 3873 4.684703 CACCGGCGTCTATTTTTATAGGAG 59.315 45.833 6.01 0.00 0.00 3.69
2153 3874 4.243270 CCGGCGTCTATTTTTATAGGAGG 58.757 47.826 6.01 0.00 0.00 4.30
2154 3875 4.243270 CGGCGTCTATTTTTATAGGAGGG 58.757 47.826 0.00 0.00 0.00 4.30
2155 3876 4.021719 CGGCGTCTATTTTTATAGGAGGGA 60.022 45.833 0.00 0.00 0.00 4.20
2156 3877 5.236282 GGCGTCTATTTTTATAGGAGGGAC 58.764 45.833 0.00 0.00 0.00 4.46
2157 3878 4.922103 GCGTCTATTTTTATAGGAGGGACG 59.078 45.833 0.00 0.00 44.14 4.79
2158 3879 4.922103 CGTCTATTTTTATAGGAGGGACGC 59.078 45.833 0.00 0.00 37.73 5.19
2159 3880 5.278858 CGTCTATTTTTATAGGAGGGACGCT 60.279 44.000 0.00 0.00 37.73 5.07
2160 3881 6.522946 GTCTATTTTTATAGGAGGGACGCTT 58.477 40.000 0.00 0.00 0.00 4.68
2161 3882 7.522725 CGTCTATTTTTATAGGAGGGACGCTTA 60.523 40.741 0.00 0.00 37.73 3.09
2162 3883 7.813627 GTCTATTTTTATAGGAGGGACGCTTAG 59.186 40.741 0.00 0.00 0.00 2.18
2163 3884 5.945144 TTTTTATAGGAGGGACGCTTAGT 57.055 39.130 0.00 0.00 0.00 2.24
2164 3885 5.945144 TTTTATAGGAGGGACGCTTAGTT 57.055 39.130 0.00 0.00 0.00 2.24
2165 3886 7.422465 TTTTTATAGGAGGGACGCTTAGTTA 57.578 36.000 0.00 0.00 0.00 2.24
2166 3887 7.422465 TTTTATAGGAGGGACGCTTAGTTAA 57.578 36.000 0.00 0.00 0.00 2.01
2167 3888 6.645790 TTATAGGAGGGACGCTTAGTTAAG 57.354 41.667 0.00 0.00 36.40 1.85
2182 3903 7.024340 CTTAGTTAAGCGTCTATCCTGTACA 57.976 40.000 0.00 0.00 0.00 2.90
2183 3904 5.909621 AGTTAAGCGTCTATCCTGTACAA 57.090 39.130 0.00 0.00 0.00 2.41
2184 3905 6.276832 AGTTAAGCGTCTATCCTGTACAAA 57.723 37.500 0.00 0.00 0.00 2.83
2185 3906 6.875076 AGTTAAGCGTCTATCCTGTACAAAT 58.125 36.000 0.00 0.00 0.00 2.32
2186 3907 8.004087 AGTTAAGCGTCTATCCTGTACAAATA 57.996 34.615 0.00 0.00 0.00 1.40
2187 3908 8.472413 AGTTAAGCGTCTATCCTGTACAAATAA 58.528 33.333 0.00 0.00 0.00 1.40
2188 3909 8.753175 GTTAAGCGTCTATCCTGTACAAATAAG 58.247 37.037 0.00 0.00 0.00 1.73
2189 3910 5.290386 AGCGTCTATCCTGTACAAATAAGC 58.710 41.667 0.00 4.79 0.00 3.09
2190 3911 5.047847 GCGTCTATCCTGTACAAATAAGCA 58.952 41.667 0.00 0.00 0.00 3.91
2191 3912 5.696724 GCGTCTATCCTGTACAAATAAGCAT 59.303 40.000 0.00 0.00 0.00 3.79
2192 3913 6.128795 GCGTCTATCCTGTACAAATAAGCATC 60.129 42.308 0.00 0.00 0.00 3.91
2193 3914 6.088217 CGTCTATCCTGTACAAATAAGCATCG 59.912 42.308 0.00 0.00 0.00 3.84
2194 3915 6.366332 GTCTATCCTGTACAAATAAGCATCGG 59.634 42.308 0.00 0.00 0.00 4.18
2195 3916 4.481368 TCCTGTACAAATAAGCATCGGT 57.519 40.909 0.00 0.00 0.00 4.69
2196 3917 4.188462 TCCTGTACAAATAAGCATCGGTG 58.812 43.478 0.00 0.00 0.00 4.94
2211 3932 4.962693 CATCGGTGCTTAAGAAAAGTCTG 58.037 43.478 6.67 0.00 33.05 3.51
2212 3933 3.399330 TCGGTGCTTAAGAAAAGTCTGG 58.601 45.455 6.67 0.00 33.05 3.86
2213 3934 3.139077 CGGTGCTTAAGAAAAGTCTGGT 58.861 45.455 6.67 0.00 33.05 4.00
2214 3935 3.564225 CGGTGCTTAAGAAAAGTCTGGTT 59.436 43.478 6.67 0.00 33.05 3.67
2215 3936 4.036380 CGGTGCTTAAGAAAAGTCTGGTTT 59.964 41.667 6.67 0.00 33.05 3.27
2216 3937 5.237779 CGGTGCTTAAGAAAAGTCTGGTTTA 59.762 40.000 6.67 0.00 33.05 2.01
2217 3938 6.072673 CGGTGCTTAAGAAAAGTCTGGTTTAT 60.073 38.462 6.67 0.00 33.05 1.40
2218 3939 7.521585 CGGTGCTTAAGAAAAGTCTGGTTTATT 60.522 37.037 6.67 0.00 33.05 1.40
2219 3940 8.141909 GGTGCTTAAGAAAAGTCTGGTTTATTT 58.858 33.333 6.67 0.00 33.05 1.40
2220 3941 9.181805 GTGCTTAAGAAAAGTCTGGTTTATTTC 57.818 33.333 6.67 0.00 33.05 2.17
2221 3942 9.131791 TGCTTAAGAAAAGTCTGGTTTATTTCT 57.868 29.630 6.67 0.00 40.90 2.52
2222 3943 9.613957 GCTTAAGAAAAGTCTGGTTTATTTCTC 57.386 33.333 6.67 0.00 38.89 2.87
2227 3948 9.004717 AGAAAAGTCTGGTTTATTTCTCTAAGC 57.995 33.333 0.00 0.00 35.96 3.09
2228 3949 8.691661 AAAAGTCTGGTTTATTTCTCTAAGCA 57.308 30.769 0.00 0.00 0.00 3.91
2229 3950 7.674471 AAGTCTGGTTTATTTCTCTAAGCAC 57.326 36.000 0.00 0.00 0.00 4.40
2230 3951 6.174049 AGTCTGGTTTATTTCTCTAAGCACC 58.826 40.000 0.00 0.00 0.00 5.01
2231 3952 6.013293 AGTCTGGTTTATTTCTCTAAGCACCT 60.013 38.462 0.00 0.00 0.00 4.00
2232 3953 6.314152 GTCTGGTTTATTTCTCTAAGCACCTC 59.686 42.308 0.00 0.00 0.00 3.85
2233 3954 5.497474 TGGTTTATTTCTCTAAGCACCTCC 58.503 41.667 0.00 0.00 0.00 4.30
2234 3955 4.882427 GGTTTATTTCTCTAAGCACCTCCC 59.118 45.833 0.00 0.00 0.00 4.30
2235 3956 4.772886 TTATTTCTCTAAGCACCTCCCC 57.227 45.455 0.00 0.00 0.00 4.81
2236 3957 2.344093 TTTCTCTAAGCACCTCCCCT 57.656 50.000 0.00 0.00 0.00 4.79
2237 3958 3.484953 TTTCTCTAAGCACCTCCCCTA 57.515 47.619 0.00 0.00 0.00 3.53
2238 3959 3.484953 TTCTCTAAGCACCTCCCCTAA 57.515 47.619 0.00 0.00 0.00 2.69
2239 3960 3.033659 TCTCTAAGCACCTCCCCTAAG 57.966 52.381 0.00 0.00 0.00 2.18
2240 3961 1.414550 CTCTAAGCACCTCCCCTAAGC 59.585 57.143 0.00 0.00 0.00 3.09
2241 3962 1.204146 CTAAGCACCTCCCCTAAGCA 58.796 55.000 0.00 0.00 0.00 3.91
2242 3963 0.909623 TAAGCACCTCCCCTAAGCAC 59.090 55.000 0.00 0.00 0.00 4.40
2243 3964 1.853250 AAGCACCTCCCCTAAGCACC 61.853 60.000 0.00 0.00 0.00 5.01
2244 3965 2.301738 GCACCTCCCCTAAGCACCT 61.302 63.158 0.00 0.00 0.00 4.00
2245 3966 1.908483 CACCTCCCCTAAGCACCTC 59.092 63.158 0.00 0.00 0.00 3.85
2246 3967 1.307084 ACCTCCCCTAAGCACCTCC 60.307 63.158 0.00 0.00 0.00 4.30
2247 3968 1.003573 CCTCCCCTAAGCACCTCCT 59.996 63.158 0.00 0.00 0.00 3.69
2248 3969 0.264955 CCTCCCCTAAGCACCTCCTA 59.735 60.000 0.00 0.00 0.00 2.94
2249 3970 1.132689 CCTCCCCTAAGCACCTCCTAT 60.133 57.143 0.00 0.00 0.00 2.57
2250 3971 2.695585 CTCCCCTAAGCACCTCCTATT 58.304 52.381 0.00 0.00 0.00 1.73
2251 3972 2.370189 CTCCCCTAAGCACCTCCTATTG 59.630 54.545 0.00 0.00 0.00 1.90
2252 3973 2.127708 CCCCTAAGCACCTCCTATTGT 58.872 52.381 0.00 0.00 0.00 2.71
2253 3974 3.051650 TCCCCTAAGCACCTCCTATTGTA 60.052 47.826 0.00 0.00 0.00 2.41
2254 3975 3.071167 CCCCTAAGCACCTCCTATTGTAC 59.929 52.174 0.00 0.00 0.00 2.90
2255 3976 3.709653 CCCTAAGCACCTCCTATTGTACA 59.290 47.826 0.00 0.00 0.00 2.90
2256 3977 4.163458 CCCTAAGCACCTCCTATTGTACAA 59.837 45.833 11.41 11.41 0.00 2.41
2257 3978 5.360591 CCTAAGCACCTCCTATTGTACAAG 58.639 45.833 14.65 0.71 0.00 3.16
2258 3979 3.914426 AGCACCTCCTATTGTACAAGG 57.086 47.619 14.65 10.74 0.00 3.61
2259 3980 2.092914 AGCACCTCCTATTGTACAAGGC 60.093 50.000 14.65 7.18 32.55 4.35
2260 3981 2.355716 GCACCTCCTATTGTACAAGGCA 60.356 50.000 14.65 1.09 32.55 4.75
2276 3997 3.692257 AGGCATAAGGGATCATCTTCG 57.308 47.619 4.17 0.36 0.00 3.79
2292 4013 2.567169 TCTTCGTCCCATCACTCATGTT 59.433 45.455 0.00 0.00 0.00 2.71
2622 4356 2.110213 AAGTCGGCGTCCAAAGCA 59.890 55.556 6.85 0.00 36.08 3.91
2661 4395 0.908198 ACTCAGCTGGATCCAAGGTC 59.092 55.000 17.00 5.44 0.00 3.85
2700 4434 0.462403 TACCCCGCGGCATACTTTTC 60.462 55.000 22.85 0.00 0.00 2.29
2701 4435 2.707039 CCCGCGGCATACTTTTCG 59.293 61.111 22.85 0.00 0.00 3.46
2793 4527 8.934023 AGAATTATAGAGGAAGAAGATCTCGT 57.066 34.615 0.00 0.00 33.16 4.18
2794 4528 9.010029 AGAATTATAGAGGAAGAAGATCTCGTC 57.990 37.037 0.00 0.00 33.16 4.20
2795 4529 8.934023 AATTATAGAGGAAGAAGATCTCGTCT 57.066 34.615 0.00 2.98 39.43 4.18
2796 4530 7.737972 TTATAGAGGAAGAAGATCTCGTCTG 57.262 40.000 12.62 0.00 37.23 3.51
2797 4531 2.687935 AGAGGAAGAAGATCTCGTCTGC 59.312 50.000 0.00 0.00 37.23 4.26
2798 4532 2.425312 GAGGAAGAAGATCTCGTCTGCA 59.575 50.000 0.00 0.00 37.23 4.41
2799 4533 2.828520 AGGAAGAAGATCTCGTCTGCAA 59.171 45.455 0.00 0.00 37.23 4.08
2800 4534 3.119173 AGGAAGAAGATCTCGTCTGCAAG 60.119 47.826 0.00 0.00 37.23 4.01
2801 4535 3.119316 GGAAGAAGATCTCGTCTGCAAGA 60.119 47.826 0.00 0.00 43.69 3.02
2900 4678 3.815809 TCAGGGTCGAAATGAAACACTT 58.184 40.909 0.00 0.00 0.00 3.16
3016 4794 0.883833 CCAGTGCACCTGATTCAACC 59.116 55.000 14.63 0.00 44.49 3.77
3130 4923 5.758296 TGTTGTACCTTCAGAGTGATTGAAC 59.242 40.000 0.00 0.00 31.66 3.18
3135 4928 3.063180 CCTTCAGAGTGATTGAACGCATC 59.937 47.826 0.00 0.00 31.66 3.91
3140 4933 5.348724 TCAGAGTGATTGAACGCATCTTTAC 59.651 40.000 0.00 0.00 0.00 2.01
3207 5000 6.939163 AGATCAGGTAAATTCCATAGACATGC 59.061 38.462 0.00 0.00 0.00 4.06
3211 5004 6.487668 CAGGTAAATTCCATAGACATGCATCA 59.512 38.462 0.00 0.00 0.00 3.07
3212 5005 7.176165 CAGGTAAATTCCATAGACATGCATCAT 59.824 37.037 0.00 0.00 0.00 2.45
3223 5016 9.032420 CATAGACATGCATCATATACACTGATC 57.968 37.037 0.00 0.00 31.00 2.92
3226 5019 6.766429 ACATGCATCATATACACTGATCAGT 58.234 36.000 22.89 22.89 43.61 3.41
3227 5020 6.872547 ACATGCATCATATACACTGATCAGTC 59.127 38.462 25.58 10.72 40.20 3.51
3229 5022 5.541484 TGCATCATATACACTGATCAGTCCT 59.459 40.000 25.58 15.47 40.20 3.85
3246 5039 9.685828 GATCAGTCCTATCAATTAGAAGTGTAC 57.314 37.037 0.00 0.00 0.00 2.90
3257 5050 8.653338 TCAATTAGAAGTGTACGCAAAGTATTC 58.347 33.333 9.48 2.64 37.69 1.75
3258 5051 6.956299 TTAGAAGTGTACGCAAAGTATTCC 57.044 37.500 9.48 0.00 37.69 3.01
3347 5140 0.034896 AGGTGACTTGCTAACACGGG 59.965 55.000 0.00 0.00 37.44 5.28
3351 5144 1.139256 TGACTTGCTAACACGGGAACA 59.861 47.619 0.00 0.00 0.00 3.18
3360 5153 3.246880 ACGGGAACACCACCTCCC 61.247 66.667 0.00 0.00 46.97 4.30
3363 5156 3.576232 GGAACACCACCTCCCACT 58.424 61.111 0.00 0.00 0.00 4.00
3367 5160 2.158579 GGAACACCACCTCCCACTAAAA 60.159 50.000 0.00 0.00 0.00 1.52
3398 5191 9.914131 TTCCATCTTAATGAGACGAACATATAG 57.086 33.333 0.00 0.00 37.17 1.31
3404 5197 8.942338 TTAATGAGACGAACATATAGCAAACT 57.058 30.769 0.00 0.00 0.00 2.66
3405 5198 7.849804 AATGAGACGAACATATAGCAAACTT 57.150 32.000 0.00 0.00 0.00 2.66
3424 5217 5.869753 ACTTGAAGTTTGATCTCGAATGG 57.130 39.130 0.00 0.00 0.00 3.16
3425 5218 4.697352 ACTTGAAGTTTGATCTCGAATGGG 59.303 41.667 0.00 0.00 0.00 4.00
3426 5219 3.009723 TGAAGTTTGATCTCGAATGGGC 58.990 45.455 0.00 0.00 0.00 5.36
3427 5220 3.274288 GAAGTTTGATCTCGAATGGGCT 58.726 45.455 0.00 0.00 0.00 5.19
3428 5221 2.636830 AGTTTGATCTCGAATGGGCTG 58.363 47.619 0.00 0.00 0.00 4.85
3429 5222 2.026822 AGTTTGATCTCGAATGGGCTGT 60.027 45.455 0.00 0.00 0.00 4.40
3441 5234 4.718961 GAATGGGCTGTGAGTATAACCAT 58.281 43.478 0.00 0.00 38.78 3.55
3442 5235 3.838244 TGGGCTGTGAGTATAACCATC 57.162 47.619 0.00 0.00 0.00 3.51
3443 5236 2.438021 TGGGCTGTGAGTATAACCATCC 59.562 50.000 0.00 0.00 0.00 3.51
3444 5237 2.706190 GGGCTGTGAGTATAACCATCCT 59.294 50.000 0.00 0.00 0.00 3.24
3445 5238 3.244249 GGGCTGTGAGTATAACCATCCTC 60.244 52.174 0.00 0.00 0.00 3.71
3446 5239 3.244249 GGCTGTGAGTATAACCATCCTCC 60.244 52.174 0.00 0.00 0.00 4.30
3447 5240 3.244249 GCTGTGAGTATAACCATCCTCCC 60.244 52.174 0.00 0.00 0.00 4.30
3448 5241 3.967326 CTGTGAGTATAACCATCCTCCCA 59.033 47.826 0.00 0.00 0.00 4.37
3449 5242 4.367166 TGTGAGTATAACCATCCTCCCAA 58.633 43.478 0.00 0.00 0.00 4.12
3450 5243 4.163458 TGTGAGTATAACCATCCTCCCAAC 59.837 45.833 0.00 0.00 0.00 3.77
3451 5244 3.714798 TGAGTATAACCATCCTCCCAACC 59.285 47.826 0.00 0.00 0.00 3.77
3452 5245 3.714798 GAGTATAACCATCCTCCCAACCA 59.285 47.826 0.00 0.00 0.00 3.67
3471 5264 4.199310 ACCATCCAACTCGGTTCATAATG 58.801 43.478 0.00 0.00 35.57 1.90
3588 5381 4.025401 CGGAGGGTGCGTTGTTGC 62.025 66.667 0.00 0.00 0.00 4.17
3619 5412 4.672587 TTTTCTCTCACACTGCTACTGT 57.327 40.909 0.00 0.00 0.00 3.55
3620 5413 4.672587 TTTCTCTCACACTGCTACTGTT 57.327 40.909 0.00 0.00 0.00 3.16
3621 5414 5.784578 TTTCTCTCACACTGCTACTGTTA 57.215 39.130 0.00 0.00 0.00 2.41
3622 5415 4.768130 TCTCTCACACTGCTACTGTTAC 57.232 45.455 0.00 0.00 0.00 2.50
3625 5418 3.889538 TCTCACACTGCTACTGTTACTGT 59.110 43.478 0.00 0.00 0.00 3.55
3626 5419 4.341235 TCTCACACTGCTACTGTTACTGTT 59.659 41.667 0.00 0.00 0.00 3.16
3627 5420 4.368315 TCACACTGCTACTGTTACTGTTG 58.632 43.478 0.00 0.00 0.00 3.33
3628 5421 3.494626 CACACTGCTACTGTTACTGTTGG 59.505 47.826 0.00 0.00 0.00 3.77
3629 5422 3.134081 ACACTGCTACTGTTACTGTTGGT 59.866 43.478 0.00 0.00 0.00 3.67
3630 5423 4.342951 ACACTGCTACTGTTACTGTTGGTA 59.657 41.667 0.00 0.00 0.00 3.25
3631 5424 4.923871 CACTGCTACTGTTACTGTTGGTAG 59.076 45.833 0.00 6.05 34.69 3.18
3632 5425 4.587684 ACTGCTACTGTTACTGTTGGTAGT 59.412 41.667 0.00 6.59 34.25 2.73
3633 5426 5.771666 ACTGCTACTGTTACTGTTGGTAGTA 59.228 40.000 12.93 0.00 34.25 1.82
3634 5427 6.017400 TGCTACTGTTACTGTTGGTAGTAC 57.983 41.667 0.00 0.00 33.14 2.73
3635 5428 5.771666 TGCTACTGTTACTGTTGGTAGTACT 59.228 40.000 0.00 0.00 33.14 2.73
3636 5429 6.266103 TGCTACTGTTACTGTTGGTAGTACTT 59.734 38.462 0.00 0.00 33.14 2.24
3637 5430 6.805760 GCTACTGTTACTGTTGGTAGTACTTC 59.194 42.308 0.00 0.00 33.14 3.01
3670 5475 0.037326 TGGTGCTACACTGCTACTGC 60.037 55.000 0.00 0.00 40.20 4.40
3709 5514 4.463879 CACGGGAGCCTGGCAGAG 62.464 72.222 22.65 11.37 0.00 3.35
3710 5515 4.704103 ACGGGAGCCTGGCAGAGA 62.704 66.667 22.65 0.00 0.00 3.10
3725 5530 4.142071 TGGCAGAGATTTCTAGTAGCAGTG 60.142 45.833 0.00 0.00 30.73 3.66
3733 5538 3.087370 TCTAGTAGCAGTGGCAAGAGA 57.913 47.619 0.00 0.00 44.61 3.10
3736 5541 3.492102 AGTAGCAGTGGCAAGAGAAAA 57.508 42.857 0.00 0.00 44.61 2.29
3762 5567 1.269257 CGAGTCTGCAACACTCTGACA 60.269 52.381 18.72 0.00 38.55 3.58
3766 5571 3.053455 GTCTGCAACACTCTGACAGTAC 58.947 50.000 1.59 0.00 32.21 2.73
3767 5572 2.693074 TCTGCAACACTCTGACAGTACA 59.307 45.455 1.59 0.00 32.21 2.90
3768 5573 3.321968 TCTGCAACACTCTGACAGTACAT 59.678 43.478 1.59 0.00 32.21 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 95 1.070914 TCATGGTGCGTTACAACCTCA 59.929 47.619 5.91 0.00 33.78 3.86
200 205 3.036084 GGTGATGCCGCCGATACG 61.036 66.667 0.00 0.00 32.63 3.06
388 427 1.270518 CCTCTTACATCCCATCGCCAG 60.271 57.143 0.00 0.00 0.00 4.85
500 543 0.683973 CCTCCTTCTCTATGCGCCAT 59.316 55.000 4.18 0.63 0.00 4.40
538 581 8.199449 AGGAAAACGTTTATAATCATCCGACTA 58.801 33.333 15.03 0.00 0.00 2.59
589 632 4.260990 CGTTTGTGTATTTGTGCTCCTTGA 60.261 41.667 0.00 0.00 0.00 3.02
591 634 3.880490 TCGTTTGTGTATTTGTGCTCCTT 59.120 39.130 0.00 0.00 0.00 3.36
592 635 3.472652 TCGTTTGTGTATTTGTGCTCCT 58.527 40.909 0.00 0.00 0.00 3.69
593 636 3.889196 TCGTTTGTGTATTTGTGCTCC 57.111 42.857 0.00 0.00 0.00 4.70
631 2030 5.591472 TGAATCTATTGCATCCCTTGAACTG 59.409 40.000 0.00 0.00 0.00 3.16
708 2108 0.169009 GGTCACCGCATGAAGCTTTC 59.831 55.000 0.00 0.00 39.72 2.62
891 2291 1.172812 GGGAAATGTATGGCCGCCTC 61.173 60.000 11.61 2.06 0.00 4.70
1116 2516 1.658968 CGAAGTCTTTTTGGTTCGCG 58.341 50.000 0.00 0.00 35.81 5.87
1125 2525 2.480419 CTGGTTGATCGCGAAGTCTTTT 59.520 45.455 15.24 0.00 0.00 2.27
1365 2765 0.898326 TGACGTAGGGCTTGCTGAGA 60.898 55.000 0.00 0.00 0.00 3.27
1488 2888 3.754530 TCGGACTCGATGGCGCAA 61.755 61.111 10.83 0.00 40.88 4.85
1668 3068 2.878406 GCAGTCCTTGAAGTAGTGCAAA 59.122 45.455 12.01 0.00 39.00 3.68
1669 3069 2.494059 GCAGTCCTTGAAGTAGTGCAA 58.506 47.619 12.01 0.00 39.00 4.08
1821 3221 4.719997 GAGAACCCGCTCTCGATG 57.280 61.111 0.00 0.00 38.10 3.84
2059 3780 6.605594 CCTTCCATTGTACAAGGCCTTAATAA 59.394 38.462 20.00 14.08 30.57 1.40
2061 3782 4.956075 CCTTCCATTGTACAAGGCCTTAAT 59.044 41.667 20.00 11.66 30.57 1.40
2063 3784 3.332485 ACCTTCCATTGTACAAGGCCTTA 59.668 43.478 20.00 1.64 40.50 2.69
2064 3785 2.110011 ACCTTCCATTGTACAAGGCCTT 59.890 45.455 13.78 13.78 40.50 4.35
2065 3786 1.710809 ACCTTCCATTGTACAAGGCCT 59.289 47.619 14.66 0.00 40.50 5.19
2066 3787 1.818674 CACCTTCCATTGTACAAGGCC 59.181 52.381 14.66 0.00 40.50 5.19
2067 3788 1.202348 GCACCTTCCATTGTACAAGGC 59.798 52.381 14.66 4.14 40.50 4.35
2068 3789 2.795329 AGCACCTTCCATTGTACAAGG 58.205 47.619 14.65 13.92 42.27 3.61
2069 3790 5.245531 TCTAAGCACCTTCCATTGTACAAG 58.754 41.667 14.65 6.30 0.00 3.16
2070 3791 5.235850 TCTAAGCACCTTCCATTGTACAA 57.764 39.130 11.41 11.41 0.00 2.41
2071 3792 4.323485 CCTCTAAGCACCTTCCATTGTACA 60.323 45.833 0.00 0.00 0.00 2.90
2072 3793 4.192317 CCTCTAAGCACCTTCCATTGTAC 58.808 47.826 0.00 0.00 0.00 2.90
2073 3794 3.199946 CCCTCTAAGCACCTTCCATTGTA 59.800 47.826 0.00 0.00 0.00 2.41
2074 3795 2.025887 CCCTCTAAGCACCTTCCATTGT 60.026 50.000 0.00 0.00 0.00 2.71
2075 3796 2.239654 TCCCTCTAAGCACCTTCCATTG 59.760 50.000 0.00 0.00 0.00 2.82
2076 3797 2.562296 TCCCTCTAAGCACCTTCCATT 58.438 47.619 0.00 0.00 0.00 3.16
2077 3798 2.270434 TCCCTCTAAGCACCTTCCAT 57.730 50.000 0.00 0.00 0.00 3.41
2078 3799 1.839994 CATCCCTCTAAGCACCTTCCA 59.160 52.381 0.00 0.00 0.00 3.53
2079 3800 1.475930 GCATCCCTCTAAGCACCTTCC 60.476 57.143 0.00 0.00 0.00 3.46
2080 3801 1.488393 AGCATCCCTCTAAGCACCTTC 59.512 52.381 0.00 0.00 0.00 3.46
2081 3802 1.589414 AGCATCCCTCTAAGCACCTT 58.411 50.000 0.00 0.00 0.00 3.50
2082 3803 1.589414 AAGCATCCCTCTAAGCACCT 58.411 50.000 0.00 0.00 0.00 4.00
2083 3804 3.560636 TTAAGCATCCCTCTAAGCACC 57.439 47.619 0.00 0.00 0.00 5.01
2084 3805 5.897377 TTTTTAAGCATCCCTCTAAGCAC 57.103 39.130 0.00 0.00 0.00 4.40
2104 3825 6.259167 GCTTCAGAAAAACCCGGTTTATTTTT 59.741 34.615 16.03 6.68 38.03 1.94
2105 3826 5.756347 GCTTCAGAAAAACCCGGTTTATTTT 59.244 36.000 16.03 7.04 34.43 1.82
2106 3827 5.163395 TGCTTCAGAAAAACCCGGTTTATTT 60.163 36.000 16.03 7.76 34.43 1.40
2107 3828 4.342665 TGCTTCAGAAAAACCCGGTTTATT 59.657 37.500 16.03 11.90 34.43 1.40
2108 3829 3.892588 TGCTTCAGAAAAACCCGGTTTAT 59.107 39.130 16.03 3.02 34.43 1.40
2109 3830 3.067040 GTGCTTCAGAAAAACCCGGTTTA 59.933 43.478 16.03 0.00 34.43 2.01
2110 3831 2.104170 TGCTTCAGAAAAACCCGGTTT 58.896 42.857 9.92 9.92 37.34 3.27
2111 3832 1.407618 GTGCTTCAGAAAAACCCGGTT 59.592 47.619 0.00 0.00 0.00 4.44
2112 3833 1.029681 GTGCTTCAGAAAAACCCGGT 58.970 50.000 0.00 0.00 0.00 5.28
2113 3834 0.313987 GGTGCTTCAGAAAAACCCGG 59.686 55.000 0.00 0.00 0.00 5.73
2114 3835 0.040425 CGGTGCTTCAGAAAAACCCG 60.040 55.000 7.91 3.09 0.00 5.28
2115 3836 0.313987 CCGGTGCTTCAGAAAAACCC 59.686 55.000 0.00 0.00 0.00 4.11
2116 3837 0.318699 GCCGGTGCTTCAGAAAAACC 60.319 55.000 1.90 4.42 33.53 3.27
2117 3838 0.660300 CGCCGGTGCTTCAGAAAAAC 60.660 55.000 0.00 0.00 34.43 2.43
2118 3839 1.098712 ACGCCGGTGCTTCAGAAAAA 61.099 50.000 16.69 0.00 34.43 1.94
2119 3840 1.503818 GACGCCGGTGCTTCAGAAAA 61.504 55.000 16.69 0.00 35.90 2.29
2120 3841 1.959226 GACGCCGGTGCTTCAGAAA 60.959 57.895 16.69 0.00 35.90 2.52
2121 3842 1.529152 TAGACGCCGGTGCTTCAGAA 61.529 55.000 16.69 0.00 38.18 3.02
2122 3843 1.320344 ATAGACGCCGGTGCTTCAGA 61.320 55.000 16.69 0.00 38.18 3.27
2123 3844 0.460284 AATAGACGCCGGTGCTTCAG 60.460 55.000 16.69 0.00 38.18 3.02
2124 3845 0.036765 AAATAGACGCCGGTGCTTCA 60.037 50.000 16.69 0.00 38.18 3.02
2125 3846 1.084289 AAAATAGACGCCGGTGCTTC 58.916 50.000 16.69 6.17 36.07 3.86
2126 3847 1.530323 AAAAATAGACGCCGGTGCTT 58.470 45.000 16.69 5.95 34.43 3.91
2127 3848 2.389962 TAAAAATAGACGCCGGTGCT 57.610 45.000 16.69 15.52 34.43 4.40
2128 3849 3.185797 CCTATAAAAATAGACGCCGGTGC 59.814 47.826 16.69 8.20 0.00 5.01
2129 3850 4.624015 TCCTATAAAAATAGACGCCGGTG 58.376 43.478 14.93 14.93 0.00 4.94
2130 3851 4.262335 CCTCCTATAAAAATAGACGCCGGT 60.262 45.833 1.90 0.00 0.00 5.28
2131 3852 4.243270 CCTCCTATAAAAATAGACGCCGG 58.757 47.826 0.00 0.00 0.00 6.13
2132 3853 4.021719 TCCCTCCTATAAAAATAGACGCCG 60.022 45.833 0.00 0.00 0.00 6.46
2133 3854 5.236282 GTCCCTCCTATAAAAATAGACGCC 58.764 45.833 0.00 0.00 0.00 5.68
2134 3855 4.922103 CGTCCCTCCTATAAAAATAGACGC 59.078 45.833 0.00 0.00 0.00 5.19
2135 3856 4.922103 GCGTCCCTCCTATAAAAATAGACG 59.078 45.833 0.00 0.00 0.00 4.18
2136 3857 6.099159 AGCGTCCCTCCTATAAAAATAGAC 57.901 41.667 0.00 0.00 0.00 2.59
2137 3858 6.742559 AAGCGTCCCTCCTATAAAAATAGA 57.257 37.500 0.00 0.00 0.00 1.98
2138 3859 7.668492 ACTAAGCGTCCCTCCTATAAAAATAG 58.332 38.462 0.00 0.00 0.00 1.73
2139 3860 7.607615 ACTAAGCGTCCCTCCTATAAAAATA 57.392 36.000 0.00 0.00 0.00 1.40
2140 3861 6.496144 ACTAAGCGTCCCTCCTATAAAAAT 57.504 37.500 0.00 0.00 0.00 1.82
2141 3862 5.945144 ACTAAGCGTCCCTCCTATAAAAA 57.055 39.130 0.00 0.00 0.00 1.94
2142 3863 5.945144 AACTAAGCGTCCCTCCTATAAAA 57.055 39.130 0.00 0.00 0.00 1.52
2143 3864 7.047460 CTTAACTAAGCGTCCCTCCTATAAA 57.953 40.000 0.00 0.00 0.00 1.40
2144 3865 6.645790 CTTAACTAAGCGTCCCTCCTATAA 57.354 41.667 0.00 0.00 0.00 0.98
2158 3879 7.024340 TGTACAGGATAGACGCTTAACTAAG 57.976 40.000 0.00 0.00 36.40 2.18
2159 3880 7.395190 TTGTACAGGATAGACGCTTAACTAA 57.605 36.000 0.00 0.00 0.00 2.24
2160 3881 7.395190 TTTGTACAGGATAGACGCTTAACTA 57.605 36.000 0.00 0.00 0.00 2.24
2161 3882 5.909621 TTGTACAGGATAGACGCTTAACT 57.090 39.130 0.00 0.00 0.00 2.24
2162 3883 8.638685 TTATTTGTACAGGATAGACGCTTAAC 57.361 34.615 0.00 0.00 0.00 2.01
2163 3884 7.437267 GCTTATTTGTACAGGATAGACGCTTAA 59.563 37.037 0.00 0.00 0.00 1.85
2164 3885 6.921857 GCTTATTTGTACAGGATAGACGCTTA 59.078 38.462 0.00 0.00 0.00 3.09
2165 3886 5.753921 GCTTATTTGTACAGGATAGACGCTT 59.246 40.000 0.00 0.00 0.00 4.68
2166 3887 5.163447 TGCTTATTTGTACAGGATAGACGCT 60.163 40.000 0.00 0.00 0.00 5.07
2167 3888 5.047847 TGCTTATTTGTACAGGATAGACGC 58.952 41.667 0.00 4.64 0.00 5.19
2168 3889 6.088217 CGATGCTTATTTGTACAGGATAGACG 59.912 42.308 0.00 0.00 0.00 4.18
2169 3890 6.366332 CCGATGCTTATTTGTACAGGATAGAC 59.634 42.308 0.00 0.00 0.00 2.59
2170 3891 6.041637 ACCGATGCTTATTTGTACAGGATAGA 59.958 38.462 0.00 0.00 0.00 1.98
2171 3892 6.146184 CACCGATGCTTATTTGTACAGGATAG 59.854 42.308 0.00 0.00 0.00 2.08
2172 3893 5.989168 CACCGATGCTTATTTGTACAGGATA 59.011 40.000 0.00 0.00 0.00 2.59
2173 3894 4.816385 CACCGATGCTTATTTGTACAGGAT 59.184 41.667 0.00 0.00 0.00 3.24
2174 3895 4.188462 CACCGATGCTTATTTGTACAGGA 58.812 43.478 0.00 0.00 0.00 3.86
2175 3896 4.536364 CACCGATGCTTATTTGTACAGG 57.464 45.455 0.00 0.00 0.00 4.00
2189 3910 4.142816 CCAGACTTTTCTTAAGCACCGATG 60.143 45.833 0.00 0.00 0.00 3.84
2190 3911 4.003648 CCAGACTTTTCTTAAGCACCGAT 58.996 43.478 0.00 0.00 0.00 4.18
2191 3912 3.181458 ACCAGACTTTTCTTAAGCACCGA 60.181 43.478 0.00 0.00 0.00 4.69
2192 3913 3.139077 ACCAGACTTTTCTTAAGCACCG 58.861 45.455 0.00 0.00 0.00 4.94
2193 3914 5.515797 AAACCAGACTTTTCTTAAGCACC 57.484 39.130 0.00 0.00 0.00 5.01
2194 3915 9.181805 GAAATAAACCAGACTTTTCTTAAGCAC 57.818 33.333 0.00 0.00 0.00 4.40
2195 3916 9.131791 AGAAATAAACCAGACTTTTCTTAAGCA 57.868 29.630 0.00 0.00 33.97 3.91
2196 3917 9.613957 GAGAAATAAACCAGACTTTTCTTAAGC 57.386 33.333 0.00 0.00 36.91 3.09
2201 3922 9.004717 GCTTAGAGAAATAAACCAGACTTTTCT 57.995 33.333 0.00 0.00 38.86 2.52
2202 3923 8.784043 TGCTTAGAGAAATAAACCAGACTTTTC 58.216 33.333 0.00 0.00 0.00 2.29
2203 3924 8.568794 GTGCTTAGAGAAATAAACCAGACTTTT 58.431 33.333 0.00 0.00 0.00 2.27
2204 3925 7.175119 GGTGCTTAGAGAAATAAACCAGACTTT 59.825 37.037 0.00 0.00 0.00 2.66
2205 3926 6.655425 GGTGCTTAGAGAAATAAACCAGACTT 59.345 38.462 0.00 0.00 0.00 3.01
2206 3927 6.013293 AGGTGCTTAGAGAAATAAACCAGACT 60.013 38.462 0.00 0.00 0.00 3.24
2207 3928 6.174049 AGGTGCTTAGAGAAATAAACCAGAC 58.826 40.000 0.00 0.00 0.00 3.51
2208 3929 6.374417 AGGTGCTTAGAGAAATAAACCAGA 57.626 37.500 0.00 0.00 0.00 3.86
2209 3930 5.586643 GGAGGTGCTTAGAGAAATAAACCAG 59.413 44.000 0.00 0.00 0.00 4.00
2210 3931 5.497474 GGAGGTGCTTAGAGAAATAAACCA 58.503 41.667 0.00 0.00 0.00 3.67
2211 3932 4.882427 GGGAGGTGCTTAGAGAAATAAACC 59.118 45.833 0.00 0.00 0.00 3.27
2212 3933 4.882427 GGGGAGGTGCTTAGAGAAATAAAC 59.118 45.833 0.00 0.00 0.00 2.01
2213 3934 4.788617 AGGGGAGGTGCTTAGAGAAATAAA 59.211 41.667 0.00 0.00 0.00 1.40
2214 3935 4.371681 AGGGGAGGTGCTTAGAGAAATAA 58.628 43.478 0.00 0.00 0.00 1.40
2215 3936 4.008916 AGGGGAGGTGCTTAGAGAAATA 57.991 45.455 0.00 0.00 0.00 1.40
2216 3937 2.852130 AGGGGAGGTGCTTAGAGAAAT 58.148 47.619 0.00 0.00 0.00 2.17
2217 3938 2.344093 AGGGGAGGTGCTTAGAGAAA 57.656 50.000 0.00 0.00 0.00 2.52
2218 3939 3.375699 CTTAGGGGAGGTGCTTAGAGAA 58.624 50.000 0.00 0.00 0.00 2.87
2219 3940 2.955461 GCTTAGGGGAGGTGCTTAGAGA 60.955 54.545 0.00 0.00 0.00 3.10
2220 3941 1.414550 GCTTAGGGGAGGTGCTTAGAG 59.585 57.143 0.00 0.00 0.00 2.43
2221 3942 1.273609 TGCTTAGGGGAGGTGCTTAGA 60.274 52.381 0.00 0.00 0.00 2.10
2222 3943 1.134371 GTGCTTAGGGGAGGTGCTTAG 60.134 57.143 0.00 0.00 0.00 2.18
2223 3944 0.909623 GTGCTTAGGGGAGGTGCTTA 59.090 55.000 0.00 0.00 0.00 3.09
2224 3945 1.685820 GTGCTTAGGGGAGGTGCTT 59.314 57.895 0.00 0.00 0.00 3.91
2225 3946 2.301738 GGTGCTTAGGGGAGGTGCT 61.302 63.158 0.00 0.00 0.00 4.40
2226 3947 2.258748 GAGGTGCTTAGGGGAGGTGC 62.259 65.000 0.00 0.00 0.00 5.01
2227 3948 1.627297 GGAGGTGCTTAGGGGAGGTG 61.627 65.000 0.00 0.00 0.00 4.00
2228 3949 1.307084 GGAGGTGCTTAGGGGAGGT 60.307 63.158 0.00 0.00 0.00 3.85
2229 3950 0.264955 TAGGAGGTGCTTAGGGGAGG 59.735 60.000 0.00 0.00 0.00 4.30
2230 3951 2.370189 CAATAGGAGGTGCTTAGGGGAG 59.630 54.545 0.00 0.00 0.00 4.30
2231 3952 2.293586 ACAATAGGAGGTGCTTAGGGGA 60.294 50.000 0.00 0.00 0.00 4.81
2232 3953 2.127708 ACAATAGGAGGTGCTTAGGGG 58.872 52.381 0.00 0.00 0.00 4.79
2233 3954 3.709653 TGTACAATAGGAGGTGCTTAGGG 59.290 47.826 0.00 0.00 0.00 3.53
2234 3955 5.353394 TTGTACAATAGGAGGTGCTTAGG 57.647 43.478 3.59 0.00 0.00 2.69
2235 3956 5.360591 CCTTGTACAATAGGAGGTGCTTAG 58.639 45.833 9.13 0.00 33.13 2.18
2236 3957 4.383770 GCCTTGTACAATAGGAGGTGCTTA 60.384 45.833 16.40 0.00 33.13 3.09
2237 3958 3.622455 GCCTTGTACAATAGGAGGTGCTT 60.622 47.826 16.40 0.00 33.13 3.91
2238 3959 2.092914 GCCTTGTACAATAGGAGGTGCT 60.093 50.000 16.40 0.00 33.13 4.40
2239 3960 2.289565 GCCTTGTACAATAGGAGGTGC 58.710 52.381 16.40 3.67 33.13 5.01
2240 3961 3.627395 TGCCTTGTACAATAGGAGGTG 57.373 47.619 16.40 0.00 33.13 4.00
2241 3962 5.163195 CCTTATGCCTTGTACAATAGGAGGT 60.163 44.000 16.40 4.88 33.13 3.85
2242 3963 5.308825 CCTTATGCCTTGTACAATAGGAGG 58.691 45.833 16.40 11.36 33.13 4.30
2243 3964 5.071788 TCCCTTATGCCTTGTACAATAGGAG 59.928 44.000 16.40 5.64 33.13 3.69
2244 3965 4.972568 TCCCTTATGCCTTGTACAATAGGA 59.027 41.667 16.40 9.63 33.13 2.94
2245 3966 5.304686 TCCCTTATGCCTTGTACAATAGG 57.695 43.478 9.13 9.04 34.54 2.57
2246 3967 6.533730 TGATCCCTTATGCCTTGTACAATAG 58.466 40.000 9.13 5.11 0.00 1.73
2247 3968 6.508030 TGATCCCTTATGCCTTGTACAATA 57.492 37.500 9.13 0.00 0.00 1.90
2248 3969 5.387113 TGATCCCTTATGCCTTGTACAAT 57.613 39.130 9.13 0.00 0.00 2.71
2249 3970 4.853468 TGATCCCTTATGCCTTGTACAA 57.147 40.909 8.28 8.28 0.00 2.41
2250 3971 4.660303 AGATGATCCCTTATGCCTTGTACA 59.340 41.667 0.00 0.00 0.00 2.90
2251 3972 5.234466 AGATGATCCCTTATGCCTTGTAC 57.766 43.478 0.00 0.00 0.00 2.90
2252 3973 5.511373 CGAAGATGATCCCTTATGCCTTGTA 60.511 44.000 0.00 0.00 0.00 2.41
2253 3974 4.723309 GAAGATGATCCCTTATGCCTTGT 58.277 43.478 0.00 0.00 0.00 3.16
2254 3975 3.750130 CGAAGATGATCCCTTATGCCTTG 59.250 47.826 0.00 0.00 0.00 3.61
2255 3976 3.392616 ACGAAGATGATCCCTTATGCCTT 59.607 43.478 0.00 0.00 0.00 4.35
2256 3977 2.975489 ACGAAGATGATCCCTTATGCCT 59.025 45.455 0.00 0.00 0.00 4.75
2257 3978 3.330267 GACGAAGATGATCCCTTATGCC 58.670 50.000 0.00 0.00 0.00 4.40
2258 3979 3.330267 GGACGAAGATGATCCCTTATGC 58.670 50.000 0.00 0.00 0.00 3.14
2622 4356 2.895372 GCGGATTTGGGCGACGAT 60.895 61.111 0.00 0.00 0.00 3.73
2661 4395 5.065218 GGGTAGCTTGAACATGAATGTACAG 59.935 44.000 0.00 0.00 40.80 2.74
2700 4434 3.476181 GGCTTTTAACGCTACAAGAACG 58.524 45.455 0.00 0.00 0.00 3.95
2701 4435 3.666111 CGGGCTTTTAACGCTACAAGAAC 60.666 47.826 0.00 0.00 0.00 3.01
2792 4526 5.734503 GCCAATTAATTAGCCTCTTGCAGAC 60.735 44.000 7.30 0.00 44.83 3.51
2793 4527 4.339247 GCCAATTAATTAGCCTCTTGCAGA 59.661 41.667 7.30 0.00 44.83 4.26
2794 4528 4.340381 AGCCAATTAATTAGCCTCTTGCAG 59.660 41.667 13.96 0.00 44.83 4.41
2795 4529 4.280819 AGCCAATTAATTAGCCTCTTGCA 58.719 39.130 13.96 0.00 44.83 4.08
2796 4530 4.926140 AGCCAATTAATTAGCCTCTTGC 57.074 40.909 13.96 2.28 41.71 4.01
2797 4531 5.296780 TCGAAGCCAATTAATTAGCCTCTTG 59.703 40.000 13.96 4.91 0.00 3.02
2798 4532 5.437060 TCGAAGCCAATTAATTAGCCTCTT 58.563 37.500 13.96 3.60 0.00 2.85
2799 4533 5.036117 TCGAAGCCAATTAATTAGCCTCT 57.964 39.130 13.96 0.90 0.00 3.69
2800 4534 5.389935 CGATCGAAGCCAATTAATTAGCCTC 60.390 44.000 10.26 10.33 0.00 4.70
2801 4535 4.452455 CGATCGAAGCCAATTAATTAGCCT 59.548 41.667 10.26 2.33 0.00 4.58
2803 4537 4.378459 CCCGATCGAAGCCAATTAATTAGC 60.378 45.833 18.66 10.22 0.00 3.09
2804 4538 4.378459 GCCCGATCGAAGCCAATTAATTAG 60.378 45.833 18.66 0.00 0.00 1.73
2806 4540 2.293399 GCCCGATCGAAGCCAATTAATT 59.707 45.455 18.66 0.00 0.00 1.40
2807 4541 1.880027 GCCCGATCGAAGCCAATTAAT 59.120 47.619 18.66 0.00 0.00 1.40
2809 4543 0.468226 AGCCCGATCGAAGCCAATTA 59.532 50.000 18.66 0.00 0.00 1.40
2810 4544 0.394352 AAGCCCGATCGAAGCCAATT 60.394 50.000 18.66 6.94 0.00 2.32
2812 4546 0.250793 TAAAGCCCGATCGAAGCCAA 59.749 50.000 18.66 4.78 0.00 4.52
2813 4547 0.179084 CTAAAGCCCGATCGAAGCCA 60.179 55.000 18.66 6.58 0.00 4.75
2963 4741 9.226606 CAGTAGGAAACATACAATTTGAAGGTA 57.773 33.333 2.79 0.00 0.00 3.08
2964 4742 7.942341 TCAGTAGGAAACATACAATTTGAAGGT 59.058 33.333 2.79 0.00 0.00 3.50
2965 4743 8.335532 TCAGTAGGAAACATACAATTTGAAGG 57.664 34.615 2.79 0.00 0.00 3.46
2983 4761 2.215704 GCACTGGTTGCCTTCAGTAGG 61.216 57.143 0.00 0.00 46.63 3.18
2984 4762 1.160137 GCACTGGTTGCCTTCAGTAG 58.840 55.000 0.00 0.00 46.63 2.57
3098 4891 6.912591 CACTCTGAAGGTACAACATTTTTCAC 59.087 38.462 0.00 0.00 0.00 3.18
3179 4972 7.861629 TGTCTATGGAATTTACCTGATCTTGT 58.138 34.615 0.00 0.00 0.00 3.16
3201 4994 6.872547 ACTGATCAGTGTATATGATGCATGTC 59.127 38.462 27.37 0.00 40.75 3.06
3202 4995 6.766429 ACTGATCAGTGTATATGATGCATGT 58.234 36.000 27.37 0.00 40.75 3.21
3207 5000 8.964772 TGATAGGACTGATCAGTGTATATGATG 58.035 37.037 32.50 0.54 42.66 3.07
3223 5016 6.418226 GCGTACACTTCTAATTGATAGGACTG 59.582 42.308 0.00 0.00 32.09 3.51
3226 5019 6.459670 TGCGTACACTTCTAATTGATAGGA 57.540 37.500 0.00 0.00 32.09 2.94
3227 5020 7.277981 ACTTTGCGTACACTTCTAATTGATAGG 59.722 37.037 0.00 0.00 32.09 2.57
3229 5022 9.811995 ATACTTTGCGTACACTTCTAATTGATA 57.188 29.630 0.00 0.00 0.00 2.15
3246 5039 4.917415 CCTTTGTTTCAGGAATACTTTGCG 59.083 41.667 0.00 0.00 32.41 4.85
3257 5050 5.436175 ACCCAAATTTTCCTTTGTTTCAGG 58.564 37.500 0.00 0.00 34.90 3.86
3258 5051 6.112058 TGACCCAAATTTTCCTTTGTTTCAG 58.888 36.000 0.00 0.00 34.90 3.02
3295 5088 8.900781 ACTTCATCAATCACCATCTTATTCAAG 58.099 33.333 0.00 0.00 0.00 3.02
3347 5140 2.943036 TTTAGTGGGAGGTGGTGTTC 57.057 50.000 0.00 0.00 0.00 3.18
3367 5160 9.613428 TGTTCGTCTCATTAAGATGGAATATTT 57.387 29.630 0.00 0.00 40.82 1.40
3376 5169 9.764363 TTTGCTATATGTTCGTCTCATTAAGAT 57.236 29.630 0.00 0.00 36.11 2.40
3404 5197 3.440173 GCCCATTCGAGATCAAACTTCAA 59.560 43.478 0.00 0.00 0.00 2.69
3405 5198 3.009723 GCCCATTCGAGATCAAACTTCA 58.990 45.455 0.00 0.00 0.00 3.02
3417 5210 3.181469 GGTTATACTCACAGCCCATTCGA 60.181 47.826 0.00 0.00 0.00 3.71
3418 5211 3.131396 GGTTATACTCACAGCCCATTCG 58.869 50.000 0.00 0.00 0.00 3.34
3419 5212 4.150897 TGGTTATACTCACAGCCCATTC 57.849 45.455 0.00 0.00 0.00 2.67
3420 5213 4.446311 GGATGGTTATACTCACAGCCCATT 60.446 45.833 0.00 0.00 33.50 3.16
3421 5214 3.073062 GGATGGTTATACTCACAGCCCAT 59.927 47.826 0.00 0.00 33.50 4.00
3422 5215 2.438021 GGATGGTTATACTCACAGCCCA 59.562 50.000 0.00 0.00 33.50 5.36
3423 5216 2.706190 AGGATGGTTATACTCACAGCCC 59.294 50.000 0.00 0.00 40.10 5.19
3424 5217 3.244249 GGAGGATGGTTATACTCACAGCC 60.244 52.174 2.26 0.00 44.74 4.85
3425 5218 3.244249 GGGAGGATGGTTATACTCACAGC 60.244 52.174 2.26 0.00 45.55 4.40
3426 5219 4.608948 GGGAGGATGGTTATACTCACAG 57.391 50.000 2.26 0.00 45.55 3.66
3428 5221 4.444449 GGTTGGGAGGATGGTTATACTCAC 60.444 50.000 2.26 0.00 46.30 3.51
3429 5222 3.714798 GGTTGGGAGGATGGTTATACTCA 59.285 47.826 2.26 0.00 44.74 3.41
3441 5234 0.991920 GAGTTGGATGGTTGGGAGGA 59.008 55.000 0.00 0.00 0.00 3.71
3442 5235 0.392998 CGAGTTGGATGGTTGGGAGG 60.393 60.000 0.00 0.00 0.00 4.30
3443 5236 0.392998 CCGAGTTGGATGGTTGGGAG 60.393 60.000 0.00 0.00 42.00 4.30
3444 5237 1.131303 ACCGAGTTGGATGGTTGGGA 61.131 55.000 2.42 0.00 42.00 4.37
3445 5238 0.251165 AACCGAGTTGGATGGTTGGG 60.251 55.000 2.42 0.00 44.05 4.12
3446 5239 1.165270 GAACCGAGTTGGATGGTTGG 58.835 55.000 2.42 0.00 45.63 3.77
3447 5240 1.890876 TGAACCGAGTTGGATGGTTG 58.109 50.000 2.42 0.00 45.63 3.77
3449 5242 3.992943 TTATGAACCGAGTTGGATGGT 57.007 42.857 2.42 0.00 42.00 3.55
3450 5243 4.199310 ACATTATGAACCGAGTTGGATGG 58.801 43.478 2.42 0.00 42.00 3.51
3451 5244 5.123820 ACAACATTATGAACCGAGTTGGATG 59.876 40.000 2.42 0.00 42.00 3.51
3452 5245 5.123820 CACAACATTATGAACCGAGTTGGAT 59.876 40.000 2.42 0.00 42.00 3.41
3548 5341 3.067180 ACAGTTCACATTCAAGTGCCTTG 59.933 43.478 8.22 8.22 42.25 3.61
3551 5344 2.349817 CGACAGTTCACATTCAAGTGCC 60.350 50.000 0.00 0.00 39.35 5.01
3601 5394 4.216472 CAGTAACAGTAGCAGTGTGAGAGA 59.784 45.833 0.00 0.00 30.99 3.10
3602 5395 4.022762 ACAGTAACAGTAGCAGTGTGAGAG 60.023 45.833 0.00 0.00 30.99 3.20
3603 5396 3.889538 ACAGTAACAGTAGCAGTGTGAGA 59.110 43.478 0.00 0.00 30.99 3.27
3604 5397 4.244425 ACAGTAACAGTAGCAGTGTGAG 57.756 45.455 0.00 0.00 30.99 3.51
3605 5398 4.368315 CAACAGTAACAGTAGCAGTGTGA 58.632 43.478 0.00 0.00 30.99 3.58
3606 5399 3.494626 CCAACAGTAACAGTAGCAGTGTG 59.505 47.826 0.00 0.00 30.99 3.82
3607 5400 3.134081 ACCAACAGTAACAGTAGCAGTGT 59.866 43.478 0.00 0.00 32.07 3.55
3608 5401 3.728845 ACCAACAGTAACAGTAGCAGTG 58.271 45.455 0.00 0.00 0.00 3.66
3609 5402 4.587684 ACTACCAACAGTAACAGTAGCAGT 59.412 41.667 0.00 0.00 34.99 4.40
3610 5403 5.135508 ACTACCAACAGTAACAGTAGCAG 57.864 43.478 0.00 0.00 34.99 4.24
3611 5404 5.771666 AGTACTACCAACAGTAACAGTAGCA 59.228 40.000 0.00 0.00 34.99 3.49
3612 5405 6.264841 AGTACTACCAACAGTAACAGTAGC 57.735 41.667 0.00 0.00 34.99 3.58
3615 5408 6.973460 AGAAGTACTACCAACAGTAACAGT 57.027 37.500 0.00 0.00 32.92 3.55
3616 5409 8.658499 AAAAGAAGTACTACCAACAGTAACAG 57.342 34.615 0.00 0.00 32.92 3.16
3617 5410 7.712205 GGAAAAGAAGTACTACCAACAGTAACA 59.288 37.037 0.00 0.00 32.92 2.41
3618 5411 7.712205 TGGAAAAGAAGTACTACCAACAGTAAC 59.288 37.037 0.00 0.00 32.92 2.50
3619 5412 7.794041 TGGAAAAGAAGTACTACCAACAGTAA 58.206 34.615 0.00 0.00 32.92 2.24
3620 5413 7.288389 TCTGGAAAAGAAGTACTACCAACAGTA 59.712 37.037 0.00 0.00 29.54 2.74
3621 5414 6.099269 TCTGGAAAAGAAGTACTACCAACAGT 59.901 38.462 0.00 0.00 29.54 3.55
3622 5415 6.522054 TCTGGAAAAGAAGTACTACCAACAG 58.478 40.000 0.00 0.00 29.54 3.16
3625 5418 7.311092 TCATCTGGAAAAGAAGTACTACCAA 57.689 36.000 0.00 0.00 38.79 3.67
3626 5419 6.928348 TCATCTGGAAAAGAAGTACTACCA 57.072 37.500 0.00 0.00 38.79 3.25
3627 5420 7.281100 CCATTCATCTGGAAAAGAAGTACTACC 59.719 40.741 0.00 0.00 39.39 3.18
3628 5421 7.824779 ACCATTCATCTGGAAAAGAAGTACTAC 59.175 37.037 0.00 0.00 39.39 2.73
3629 5422 7.824289 CACCATTCATCTGGAAAAGAAGTACTA 59.176 37.037 0.00 0.00 39.39 1.82
3630 5423 6.656693 CACCATTCATCTGGAAAAGAAGTACT 59.343 38.462 0.00 0.00 39.39 2.73
3631 5424 6.623767 GCACCATTCATCTGGAAAAGAAGTAC 60.624 42.308 0.00 0.00 39.39 2.73
3632 5425 5.415701 GCACCATTCATCTGGAAAAGAAGTA 59.584 40.000 0.00 0.00 39.39 2.24
3633 5426 4.219288 GCACCATTCATCTGGAAAAGAAGT 59.781 41.667 0.00 0.00 39.39 3.01
3634 5427 4.461781 AGCACCATTCATCTGGAAAAGAAG 59.538 41.667 0.00 0.00 39.39 2.85
3635 5428 4.410099 AGCACCATTCATCTGGAAAAGAA 58.590 39.130 0.00 0.00 39.39 2.52
3636 5429 4.038271 AGCACCATTCATCTGGAAAAGA 57.962 40.909 0.00 0.00 39.39 2.52
3637 5430 4.701651 TGTAGCACCATTCATCTGGAAAAG 59.298 41.667 0.00 0.00 39.39 2.27
3670 5475 0.179116 CGTGAGAGAGTGATGCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
3695 5500 0.465278 GAAATCTCTGCCAGGCTCCC 60.465 60.000 14.15 0.00 0.00 4.30
3697 5502 2.433970 ACTAGAAATCTCTGCCAGGCTC 59.566 50.000 14.15 0.00 32.70 4.70
3698 5503 2.476199 ACTAGAAATCTCTGCCAGGCT 58.524 47.619 14.15 0.00 32.70 4.58
3699 5504 2.998316 ACTAGAAATCTCTGCCAGGC 57.002 50.000 3.66 3.66 32.70 4.85
3701 5506 4.099266 ACTGCTACTAGAAATCTCTGCCAG 59.901 45.833 0.00 0.00 32.70 4.85
3702 5507 4.026744 ACTGCTACTAGAAATCTCTGCCA 58.973 43.478 0.00 0.00 32.70 4.92
3703 5508 4.367450 CACTGCTACTAGAAATCTCTGCC 58.633 47.826 0.00 0.00 32.70 4.85
3705 5510 4.142071 TGCCACTGCTACTAGAAATCTCTG 60.142 45.833 0.00 0.00 38.71 3.35
3706 5511 4.026744 TGCCACTGCTACTAGAAATCTCT 58.973 43.478 0.00 0.00 38.71 3.10
3707 5512 4.392921 TGCCACTGCTACTAGAAATCTC 57.607 45.455 0.00 0.00 38.71 2.75
3708 5513 4.467795 TCTTGCCACTGCTACTAGAAATCT 59.532 41.667 0.00 0.00 38.71 2.40
3709 5514 4.759782 TCTTGCCACTGCTACTAGAAATC 58.240 43.478 0.00 0.00 38.71 2.17
3710 5515 4.467795 TCTCTTGCCACTGCTACTAGAAAT 59.532 41.667 0.00 0.00 38.71 2.17
3736 5541 4.449068 CAGAGTGTTGCAGACTCGTTATTT 59.551 41.667 17.63 2.25 43.95 1.40
3740 5545 1.409064 TCAGAGTGTTGCAGACTCGTT 59.591 47.619 17.63 3.96 43.95 3.85
3746 5551 2.693074 TGTACTGTCAGAGTGTTGCAGA 59.307 45.455 6.91 0.00 35.96 4.26
3748 5553 3.181466 ACATGTACTGTCAGAGTGTTGCA 60.181 43.478 6.91 0.00 35.96 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.