Multiple sequence alignment - TraesCS4D01G142800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G142800 chr4D 100.000 3728 0 0 1 3728 128748070 128751797 0.000000e+00 6885.0
1 TraesCS4D01G142800 chr4D 89.308 318 31 2 1 316 25585687 25585371 2.700000e-106 396.0
2 TraesCS4D01G142800 chr4D 100.000 35 0 0 3064 3098 128751098 128751132 8.640000e-07 65.8
3 TraesCS4D01G142800 chr4D 100.000 35 0 0 3029 3063 128751133 128751167 8.640000e-07 65.8
4 TraesCS4D01G142800 chr4A 95.418 1353 37 14 310 1651 438394204 438395542 0.000000e+00 2132.0
5 TraesCS4D01G142800 chr4A 93.128 975 32 17 1968 2917 438397997 438398961 0.000000e+00 1397.0
6 TraesCS4D01G142800 chr4A 89.888 89 4 4 1888 1973 438396415 438396501 3.940000e-20 110.0
7 TraesCS4D01G142800 chrUn 94.025 1339 39 22 310 1635 263129326 263128016 0.000000e+00 1991.0
8 TraesCS4D01G142800 chrUn 88.866 979 30 22 1943 2910 263126081 263125171 0.000000e+00 1131.0
9 TraesCS4D01G142800 chrUn 87.066 317 22 5 1652 1952 263127739 263127426 1.280000e-89 340.0
10 TraesCS4D01G142800 chr3A 89.323 665 69 2 3065 3728 373046744 373047407 0.000000e+00 833.0
11 TraesCS4D01G142800 chr3A 86.349 315 37 4 1 311 572219249 572218937 4.610000e-89 339.0
12 TraesCS4D01G142800 chr3A 91.071 56 5 0 2946 3001 142951116 142951061 3.990000e-10 76.8
13 TraesCS4D01G142800 chr5A 88.705 664 74 1 3065 3728 17685305 17684643 0.000000e+00 809.0
14 TraesCS4D01G142800 chr5A 81.395 86 8 7 2951 3031 605088946 605088864 3.110000e-06 63.9
15 TraesCS4D01G142800 chr2B 85.714 665 95 0 3064 3728 393018400 393017736 0.000000e+00 702.0
16 TraesCS4D01G142800 chr2D 87.267 589 75 0 3067 3655 55229902 55230490 0.000000e+00 673.0
17 TraesCS4D01G142800 chr5B 88.304 513 60 0 3216 3728 134933616 134934128 1.900000e-172 616.0
18 TraesCS4D01G142800 chr5B 87.255 306 36 2 1 304 139158350 139158654 2.760000e-91 346.0
19 TraesCS4D01G142800 chr5B 87.255 306 36 2 1 304 612953129 612953433 2.760000e-91 346.0
20 TraesCS4D01G142800 chr5B 87.255 306 36 2 1 304 612957955 612958259 2.760000e-91 346.0
21 TraesCS4D01G142800 chr5B 88.235 51 6 0 2951 3001 95143675 95143625 1.120000e-05 62.1
22 TraesCS4D01G142800 chr1A 81.503 519 90 5 3213 3728 335823398 335823913 4.450000e-114 422.0
23 TraesCS4D01G142800 chr3B 90.909 297 18 3 3065 3359 656918143 656917854 1.260000e-104 390.0
24 TraesCS4D01G142800 chr3B 86.262 313 38 4 1 310 606651392 606651082 5.970000e-88 335.0
25 TraesCS4D01G142800 chr3B 90.426 94 9 0 3065 3158 579445590 579445683 1.410000e-24 124.0
26 TraesCS4D01G142800 chr3B 90.741 54 3 2 2952 3005 12295221 12295170 1.860000e-08 71.3
27 TraesCS4D01G142800 chr2A 87.179 312 38 1 2 311 430690235 430689924 1.650000e-93 353.0
28 TraesCS4D01G142800 chr4B 86.928 306 37 3 1 304 53556659 53556355 1.280000e-89 340.0
29 TraesCS4D01G142800 chr1D 86.218 312 39 4 1 309 402291576 402291886 5.970000e-88 335.0
30 TraesCS4D01G142800 chr1D 87.302 63 6 1 2940 3000 293609491 293609553 1.860000e-08 71.3
31 TraesCS4D01G142800 chr1D 90.476 42 4 0 3536 3577 313847941 313847900 5.200000e-04 56.5
32 TraesCS4D01G142800 chr6D 91.379 58 3 2 2948 3005 71997963 71997908 1.110000e-10 78.7
33 TraesCS4D01G142800 chr7B 93.478 46 3 0 3065 3110 248553614 248553659 6.680000e-08 69.4
34 TraesCS4D01G142800 chr7B 81.481 81 7 8 2944 3021 133742088 133742013 4.020000e-05 60.2
35 TraesCS4D01G142800 chr5D 82.500 80 8 5 2951 3027 322397418 322397342 8.640000e-07 65.8
36 TraesCS4D01G142800 chr7A 87.273 55 7 0 2948 3002 441960259 441960313 3.110000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G142800 chr4D 128748070 128751797 3727 False 2338.866667 6885 100.000000 1 3728 3 chr4D.!!$F1 3727
1 TraesCS4D01G142800 chr4A 438394204 438398961 4757 False 1213.000000 2132 92.811333 310 2917 3 chr4A.!!$F1 2607
2 TraesCS4D01G142800 chrUn 263125171 263129326 4155 True 1154.000000 1991 89.985667 310 2910 3 chrUn.!!$R1 2600
3 TraesCS4D01G142800 chr3A 373046744 373047407 663 False 833.000000 833 89.323000 3065 3728 1 chr3A.!!$F1 663
4 TraesCS4D01G142800 chr5A 17684643 17685305 662 True 809.000000 809 88.705000 3065 3728 1 chr5A.!!$R1 663
5 TraesCS4D01G142800 chr2B 393017736 393018400 664 True 702.000000 702 85.714000 3064 3728 1 chr2B.!!$R1 664
6 TraesCS4D01G142800 chr2D 55229902 55230490 588 False 673.000000 673 87.267000 3067 3655 1 chr2D.!!$F1 588
7 TraesCS4D01G142800 chr5B 134933616 134934128 512 False 616.000000 616 88.304000 3216 3728 1 chr5B.!!$F1 512
8 TraesCS4D01G142800 chr1A 335823398 335823913 515 False 422.000000 422 81.503000 3213 3728 1 chr1A.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.033894 TTCGGGGGAAATAACTGCCC 60.034 55.0 0.0 0.0 46.12 5.36 F
74 75 0.036388 CAGACACAGGCGGTATGGTT 60.036 55.0 0.0 0.0 0.00 3.67 F
207 208 0.040058 TGTCTAACCCTACCGCCAGA 59.960 55.0 0.0 0.0 0.00 3.86 F
938 953 0.179004 ACCACTCGCCATTGTTTCCA 60.179 50.0 0.0 0.0 0.00 3.53 F
939 954 0.523072 CCACTCGCCATTGTTTCCAG 59.477 55.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2849 0.035317 TCTTAGGTGTGCTGTGCTGG 59.965 55.000 0.00 0.0 0.0 4.85 R
1960 2856 1.141881 CGGCGATCTTAGGTGTGCT 59.858 57.895 0.00 0.0 0.0 4.40 R
2101 4897 0.032678 CCATGAGCCTGCCTAGTACG 59.967 60.000 0.00 0.0 0.0 3.67 R
2304 5111 0.398806 ATGCCCAATGCCCAATGCTA 60.399 50.000 0.00 0.0 42.0 3.49 R
2775 5590 0.596082 ACCAGCGGCACAACAATTAC 59.404 50.000 1.45 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.785859 GAGATGGGCAGGGACGCA 61.786 66.667 0.00 0.00 36.87 5.24
18 19 3.746949 GAGATGGGCAGGGACGCAG 62.747 68.421 0.00 0.00 35.80 5.18
19 20 4.864334 GATGGGCAGGGACGCAGG 62.864 72.222 0.00 0.00 35.80 4.85
24 25 4.660938 GCAGGGACGCAGGGGTTT 62.661 66.667 0.00 0.00 0.00 3.27
25 26 2.359975 CAGGGACGCAGGGGTTTC 60.360 66.667 0.00 0.00 0.00 2.78
26 27 4.016706 AGGGACGCAGGGGTTTCG 62.017 66.667 0.00 0.00 0.00 3.46
32 33 3.974293 GCAGGGGTTTCGGGGGAA 61.974 66.667 0.00 0.00 0.00 3.97
33 34 2.848032 CAGGGGTTTCGGGGGAAA 59.152 61.111 0.00 0.00 0.00 3.13
34 35 1.386550 CAGGGGTTTCGGGGGAAAT 59.613 57.895 0.00 0.00 0.00 2.17
35 36 0.626916 CAGGGGTTTCGGGGGAAATA 59.373 55.000 0.00 0.00 0.00 1.40
36 37 1.006162 CAGGGGTTTCGGGGGAAATAA 59.994 52.381 0.00 0.00 0.00 1.40
37 38 1.006281 AGGGGTTTCGGGGGAAATAAC 59.994 52.381 0.00 0.00 0.00 1.89
38 39 1.006281 GGGGTTTCGGGGGAAATAACT 59.994 52.381 0.00 0.00 0.00 2.24
39 40 2.097036 GGGTTTCGGGGGAAATAACTG 58.903 52.381 0.00 0.00 0.00 3.16
40 41 1.475280 GGTTTCGGGGGAAATAACTGC 59.525 52.381 0.00 0.00 0.00 4.40
41 42 1.475280 GTTTCGGGGGAAATAACTGCC 59.525 52.381 0.00 0.00 0.00 4.85
42 43 0.033894 TTCGGGGGAAATAACTGCCC 60.034 55.000 0.00 0.00 46.12 5.36
44 45 4.252983 GGGGAAATAACTGCCCGG 57.747 61.111 0.00 0.00 42.99 5.73
45 46 1.610873 GGGGAAATAACTGCCCGGA 59.389 57.895 0.73 0.00 42.99 5.14
46 47 0.750546 GGGGAAATAACTGCCCGGAC 60.751 60.000 0.73 0.00 42.99 4.79
47 48 0.750546 GGGAAATAACTGCCCGGACC 60.751 60.000 0.73 0.00 31.06 4.46
48 49 0.750546 GGAAATAACTGCCCGGACCC 60.751 60.000 0.73 0.00 0.00 4.46
49 50 0.255033 GAAATAACTGCCCGGACCCT 59.745 55.000 0.73 0.00 0.00 4.34
50 51 1.487558 GAAATAACTGCCCGGACCCTA 59.512 52.381 0.73 0.00 0.00 3.53
51 52 0.835276 AATAACTGCCCGGACCCTAC 59.165 55.000 0.73 0.00 0.00 3.18
52 53 1.052694 ATAACTGCCCGGACCCTACC 61.053 60.000 0.73 0.00 0.00 3.18
59 60 3.834799 CGGACCCTACCGCCAGAC 61.835 72.222 0.00 0.00 46.20 3.51
60 61 2.682494 GGACCCTACCGCCAGACA 60.682 66.667 0.00 0.00 0.00 3.41
61 62 2.577593 GACCCTACCGCCAGACAC 59.422 66.667 0.00 0.00 0.00 3.67
62 63 2.203728 ACCCTACCGCCAGACACA 60.204 61.111 0.00 0.00 0.00 3.72
63 64 2.227089 GACCCTACCGCCAGACACAG 62.227 65.000 0.00 0.00 0.00 3.66
64 65 2.579201 CCTACCGCCAGACACAGG 59.421 66.667 0.00 0.00 0.00 4.00
70 71 2.584608 GCCAGACACAGGCGGTAT 59.415 61.111 0.00 0.00 43.15 2.73
71 72 1.815421 GCCAGACACAGGCGGTATG 60.815 63.158 0.00 0.00 43.15 2.39
72 73 1.153369 CCAGACACAGGCGGTATGG 60.153 63.158 6.33 6.33 40.79 2.74
73 74 1.596934 CAGACACAGGCGGTATGGT 59.403 57.895 0.00 0.00 0.00 3.55
74 75 0.036388 CAGACACAGGCGGTATGGTT 60.036 55.000 0.00 0.00 0.00 3.67
75 76 1.206132 CAGACACAGGCGGTATGGTTA 59.794 52.381 0.00 0.00 0.00 2.85
76 77 1.480954 AGACACAGGCGGTATGGTTAG 59.519 52.381 0.00 0.00 0.00 2.34
77 78 1.479323 GACACAGGCGGTATGGTTAGA 59.521 52.381 0.00 0.00 0.00 2.10
78 79 1.206371 ACACAGGCGGTATGGTTAGAC 59.794 52.381 0.00 0.00 0.00 2.59
79 80 1.206132 CACAGGCGGTATGGTTAGACA 59.794 52.381 0.00 0.00 0.00 3.41
80 81 1.480954 ACAGGCGGTATGGTTAGACAG 59.519 52.381 0.00 0.00 0.00 3.51
81 82 1.120530 AGGCGGTATGGTTAGACAGG 58.879 55.000 0.00 0.00 0.00 4.00
82 83 0.532196 GGCGGTATGGTTAGACAGGC 60.532 60.000 0.00 0.00 32.51 4.85
83 84 0.464452 GCGGTATGGTTAGACAGGCT 59.536 55.000 0.00 0.00 0.00 4.58
84 85 1.684983 GCGGTATGGTTAGACAGGCTA 59.315 52.381 0.00 0.00 0.00 3.93
85 86 2.545322 GCGGTATGGTTAGACAGGCTAC 60.545 54.545 0.00 0.00 0.00 3.58
86 87 2.035576 CGGTATGGTTAGACAGGCTACC 59.964 54.545 0.00 0.00 0.00 3.18
87 88 2.035576 GGTATGGTTAGACAGGCTACCG 59.964 54.545 0.00 0.00 0.00 4.02
88 89 0.464452 ATGGTTAGACAGGCTACCGC 59.536 55.000 0.00 0.00 0.00 5.68
105 106 2.762459 CCAGGTGCCCTAGCGGTA 60.762 66.667 0.00 0.00 44.31 4.02
106 107 2.797278 CCAGGTGCCCTAGCGGTAG 61.797 68.421 14.73 14.73 44.31 3.18
107 108 2.444140 AGGTGCCCTAGCGGTAGG 60.444 66.667 29.84 29.84 45.25 3.18
113 114 2.831742 CCTAGCGGTAGGGTGCGA 60.832 66.667 29.29 0.00 42.25 5.10
114 115 2.201022 CCTAGCGGTAGGGTGCGAT 61.201 63.158 29.29 0.00 42.25 4.58
115 116 1.007271 CTAGCGGTAGGGTGCGATG 60.007 63.158 13.90 0.00 35.87 3.84
116 117 1.452953 CTAGCGGTAGGGTGCGATGA 61.453 60.000 13.90 0.00 35.87 2.92
117 118 1.038681 TAGCGGTAGGGTGCGATGAA 61.039 55.000 0.00 0.00 35.87 2.57
118 119 1.883084 GCGGTAGGGTGCGATGAAG 60.883 63.158 0.00 0.00 0.00 3.02
119 120 1.227263 CGGTAGGGTGCGATGAAGG 60.227 63.158 0.00 0.00 0.00 3.46
120 121 1.146263 GGTAGGGTGCGATGAAGGG 59.854 63.158 0.00 0.00 0.00 3.95
121 122 1.146263 GTAGGGTGCGATGAAGGGG 59.854 63.158 0.00 0.00 0.00 4.79
122 123 2.070039 TAGGGTGCGATGAAGGGGG 61.070 63.158 0.00 0.00 0.00 5.40
123 124 2.539277 TAGGGTGCGATGAAGGGGGA 62.539 60.000 0.00 0.00 0.00 4.81
124 125 2.124695 GGTGCGATGAAGGGGGAC 60.125 66.667 0.00 0.00 0.00 4.46
125 126 2.511600 GTGCGATGAAGGGGGACG 60.512 66.667 0.00 0.00 0.00 4.79
126 127 3.781307 TGCGATGAAGGGGGACGG 61.781 66.667 0.00 0.00 0.00 4.79
128 129 4.891727 CGATGAAGGGGGACGGCG 62.892 72.222 4.80 4.80 0.00 6.46
129 130 4.547367 GATGAAGGGGGACGGCGG 62.547 72.222 13.24 0.00 0.00 6.13
156 157 3.299585 CGCGCTGACGTGGATAAG 58.700 61.111 5.56 0.00 45.93 1.73
157 158 1.516386 CGCGCTGACGTGGATAAGT 60.516 57.895 5.56 0.00 45.93 2.24
158 159 0.248336 CGCGCTGACGTGGATAAGTA 60.248 55.000 5.56 0.00 45.93 2.24
159 160 1.197910 GCGCTGACGTGGATAAGTAC 58.802 55.000 0.00 0.00 42.83 2.73
160 161 1.836383 CGCTGACGTGGATAAGTACC 58.164 55.000 0.00 0.00 33.53 3.34
161 162 1.535437 CGCTGACGTGGATAAGTACCC 60.535 57.143 0.00 0.00 33.53 3.69
162 163 1.755380 GCTGACGTGGATAAGTACCCT 59.245 52.381 0.00 0.00 0.00 4.34
163 164 2.954318 GCTGACGTGGATAAGTACCCTA 59.046 50.000 0.00 0.00 0.00 3.53
164 165 3.243334 GCTGACGTGGATAAGTACCCTAC 60.243 52.174 0.00 0.00 0.00 3.18
165 166 3.290710 TGACGTGGATAAGTACCCTACC 58.709 50.000 0.00 0.00 0.00 3.18
166 167 3.290710 GACGTGGATAAGTACCCTACCA 58.709 50.000 0.00 0.00 0.00 3.25
167 168 3.026694 ACGTGGATAAGTACCCTACCAC 58.973 50.000 15.35 15.35 42.64 4.16
168 169 2.363359 CGTGGATAAGTACCCTACCACC 59.637 54.545 17.85 0.00 42.97 4.61
169 170 3.377573 GTGGATAAGTACCCTACCACCA 58.622 50.000 14.76 0.00 40.96 4.17
170 171 3.776417 GTGGATAAGTACCCTACCACCAA 59.224 47.826 14.76 0.00 40.96 3.67
171 172 4.035112 TGGATAAGTACCCTACCACCAAG 58.965 47.826 0.00 0.00 0.00 3.61
172 173 3.390311 GGATAAGTACCCTACCACCAAGG 59.610 52.174 0.00 0.00 45.67 3.61
177 178 2.614013 CCTACCACCAAGGGCCCT 60.614 66.667 22.28 22.28 43.89 5.19
178 179 2.677228 CTACCACCAAGGGCCCTG 59.323 66.667 29.50 17.44 43.89 4.45
179 180 2.938798 TACCACCAAGGGCCCTGG 60.939 66.667 29.50 29.10 43.89 4.45
185 186 4.489771 CAAGGGCCCTGGCGGTAG 62.490 72.222 29.50 5.71 43.06 3.18
191 192 4.162690 CCCTGGCGGTAGGCTGTC 62.163 72.222 0.00 0.00 44.18 3.51
192 193 3.077556 CCTGGCGGTAGGCTGTCT 61.078 66.667 0.00 0.00 44.18 3.41
193 194 1.756950 CCTGGCGGTAGGCTGTCTA 60.757 63.158 0.00 0.00 44.18 2.59
194 195 1.327690 CCTGGCGGTAGGCTGTCTAA 61.328 60.000 0.00 0.00 44.18 2.10
195 196 0.179108 CTGGCGGTAGGCTGTCTAAC 60.179 60.000 0.00 0.00 44.18 2.34
196 197 1.143401 GGCGGTAGGCTGTCTAACC 59.857 63.158 0.00 0.00 42.94 2.85
197 198 1.143401 GCGGTAGGCTGTCTAACCC 59.857 63.158 0.00 0.00 39.11 4.11
198 199 1.328430 GCGGTAGGCTGTCTAACCCT 61.328 60.000 0.00 0.00 39.11 4.34
199 200 2.025863 GCGGTAGGCTGTCTAACCCTA 61.026 57.143 0.00 0.00 39.11 3.53
200 201 1.680207 CGGTAGGCTGTCTAACCCTAC 59.320 57.143 0.00 7.39 46.60 3.18
202 203 1.680207 GTAGGCTGTCTAACCCTACCG 59.320 57.143 0.00 0.00 43.31 4.02
203 204 1.143401 GGCTGTCTAACCCTACCGC 59.857 63.158 0.00 0.00 0.00 5.68
204 205 1.143401 GCTGTCTAACCCTACCGCC 59.857 63.158 0.00 0.00 0.00 6.13
205 206 1.610554 GCTGTCTAACCCTACCGCCA 61.611 60.000 0.00 0.00 0.00 5.69
206 207 0.460311 CTGTCTAACCCTACCGCCAG 59.540 60.000 0.00 0.00 0.00 4.85
207 208 0.040058 TGTCTAACCCTACCGCCAGA 59.960 55.000 0.00 0.00 0.00 3.86
208 209 0.745468 GTCTAACCCTACCGCCAGAG 59.255 60.000 0.00 0.00 0.00 3.35
209 210 1.041447 TCTAACCCTACCGCCAGAGC 61.041 60.000 0.00 0.00 0.00 4.09
210 211 2.029307 CTAACCCTACCGCCAGAGCC 62.029 65.000 0.00 0.00 34.57 4.70
214 215 3.854669 CTACCGCCAGAGCCCCTG 61.855 72.222 0.00 0.00 42.55 4.45
225 226 3.087065 GCCCCTGGCTGTAGGAAA 58.913 61.111 0.00 0.00 46.69 3.13
226 227 1.382629 GCCCCTGGCTGTAGGAAAA 59.617 57.895 0.00 0.00 46.69 2.29
227 228 0.251608 GCCCCTGGCTGTAGGAAAAA 60.252 55.000 0.00 0.00 46.69 1.94
267 268 7.953005 AAAAATTCAAACCAGGGTCAAAATT 57.047 28.000 0.00 0.00 0.00 1.82
268 269 7.953005 AAAATTCAAACCAGGGTCAAAATTT 57.047 28.000 9.80 9.80 0.00 1.82
269 270 9.467796 AAAAATTCAAACCAGGGTCAAAATTTA 57.532 25.926 13.42 0.00 29.96 1.40
270 271 9.467796 AAAATTCAAACCAGGGTCAAAATTTAA 57.532 25.926 13.42 0.00 29.96 1.52
271 272 9.639563 AAATTCAAACCAGGGTCAAAATTTAAT 57.360 25.926 12.26 0.00 0.00 1.40
272 273 9.639563 AATTCAAACCAGGGTCAAAATTTAATT 57.360 25.926 0.00 0.00 0.00 1.40
273 274 9.639563 ATTCAAACCAGGGTCAAAATTTAATTT 57.360 25.926 0.00 0.00 0.00 1.82
274 275 9.467796 TTCAAACCAGGGTCAAAATTTAATTTT 57.532 25.926 9.58 9.58 42.81 1.82
296 297 8.848474 TTTTATTTGTCAAAAGGGTCAAAACA 57.152 26.923 1.31 0.00 34.32 2.83
297 298 7.835634 TTATTTGTCAAAAGGGTCAAAACAC 57.164 32.000 1.31 0.00 34.32 3.32
298 299 3.495670 TGTCAAAAGGGTCAAAACACG 57.504 42.857 0.00 0.00 32.44 4.49
299 300 3.082548 TGTCAAAAGGGTCAAAACACGA 58.917 40.909 0.00 0.00 32.44 4.35
300 301 3.506455 TGTCAAAAGGGTCAAAACACGAA 59.494 39.130 0.00 0.00 32.44 3.85
301 302 4.022242 TGTCAAAAGGGTCAAAACACGAAA 60.022 37.500 0.00 0.00 32.44 3.46
302 303 5.106442 GTCAAAAGGGTCAAAACACGAAAT 58.894 37.500 0.00 0.00 32.44 2.17
303 304 5.579119 GTCAAAAGGGTCAAAACACGAAATT 59.421 36.000 0.00 0.00 32.44 1.82
304 305 6.091577 GTCAAAAGGGTCAAAACACGAAATTT 59.908 34.615 0.00 0.00 32.44 1.82
305 306 7.275999 GTCAAAAGGGTCAAAACACGAAATTTA 59.724 33.333 0.00 0.00 32.44 1.40
306 307 7.489757 TCAAAAGGGTCAAAACACGAAATTTAG 59.510 33.333 0.00 0.00 32.44 1.85
307 308 4.866921 AGGGTCAAAACACGAAATTTAGC 58.133 39.130 0.00 0.00 32.44 3.09
308 309 3.985279 GGGTCAAAACACGAAATTTAGCC 59.015 43.478 0.00 0.00 0.00 3.93
397 398 8.597227 GTGTAAAAACAGGTTCACAAAATAACC 58.403 33.333 0.00 0.00 44.59 2.85
434 435 6.436532 ACTCCTCAAAATCTGATGCAGAAATT 59.563 34.615 0.78 0.00 44.04 1.82
483 488 3.988379 AATGCTGCAAAGACGAAAAGA 57.012 38.095 6.36 0.00 0.00 2.52
484 489 2.755836 TGCTGCAAAGACGAAAAGAC 57.244 45.000 0.00 0.00 0.00 3.01
485 490 2.288666 TGCTGCAAAGACGAAAAGACT 58.711 42.857 0.00 0.00 0.00 3.24
905 920 9.672086 CTAGCTATAAATACACACAGACTTCTC 57.328 37.037 0.00 0.00 0.00 2.87
929 944 1.549243 TTAGCATCCACCACTCGCCA 61.549 55.000 0.00 0.00 0.00 5.69
930 945 1.337384 TAGCATCCACCACTCGCCAT 61.337 55.000 0.00 0.00 0.00 4.40
932 947 1.996786 GCATCCACCACTCGCCATTG 61.997 60.000 0.00 0.00 0.00 2.82
933 948 0.677731 CATCCACCACTCGCCATTGT 60.678 55.000 0.00 0.00 0.00 2.71
936 951 0.240945 CCACCACTCGCCATTGTTTC 59.759 55.000 0.00 0.00 0.00 2.78
937 952 0.240945 CACCACTCGCCATTGTTTCC 59.759 55.000 0.00 0.00 0.00 3.13
938 953 0.179004 ACCACTCGCCATTGTTTCCA 60.179 50.000 0.00 0.00 0.00 3.53
939 954 0.523072 CCACTCGCCATTGTTTCCAG 59.477 55.000 0.00 0.00 0.00 3.86
968 988 3.077359 CAAGCCAAGAAGTAACAGAGGG 58.923 50.000 0.00 0.00 0.00 4.30
1101 1121 3.103911 GTGGACGTGCCGTTCGAG 61.104 66.667 4.04 0.00 41.37 4.04
1332 1352 2.817423 CTCGCATTCTCGCCCTTGC 61.817 63.158 0.00 0.00 0.00 4.01
1350 1370 2.237751 CGCAGTGCAGCCGTATACC 61.238 63.158 16.83 0.00 0.00 2.73
1498 1518 0.874175 TGCAGACCAACGTGTTCTCG 60.874 55.000 0.00 0.00 0.00 4.04
1603 1623 3.072211 CCTCTACATGATCGCGTACCTA 58.928 50.000 5.77 0.00 0.00 3.08
1605 1625 4.437524 CCTCTACATGATCGCGTACCTATG 60.438 50.000 5.77 7.90 0.00 2.23
1640 1896 8.693542 TTTCGTATTCCTGCTTACTAAGTTAC 57.306 34.615 0.00 0.00 0.00 2.50
1659 1915 5.075344 AGTTACTTTCCCCCTTATTGGTGAA 59.925 40.000 0.00 0.00 0.00 3.18
1724 2020 6.608610 ACTGATTTGTTATTACGTGAAAGGC 58.391 36.000 0.00 0.00 0.00 4.35
1739 2035 8.515473 ACGTGAAAGGCTAATTAATTTTTGAC 57.485 30.769 5.91 4.61 0.00 3.18
1808 2202 6.149142 TGTGCTCAAAAATGCCATTTTATTCC 59.851 34.615 15.33 6.29 41.30 3.01
1809 2203 5.647225 TGCTCAAAAATGCCATTTTATTCCC 59.353 36.000 15.33 5.09 41.30 3.97
1923 2819 8.349983 ACATGATATTTTAAAATCTGTACCGCC 58.650 33.333 16.56 0.00 0.00 6.13
1953 2849 7.096640 GCAACATGCATAATATCCGTAAACAAC 60.097 37.037 0.00 0.00 44.26 3.32
1960 2856 2.264005 ATCCGTAAACAACCAGCACA 57.736 45.000 0.00 0.00 0.00 4.57
2144 4940 2.088763 CGCGTGCAGTCCTACAGTG 61.089 63.158 0.00 0.00 0.00 3.66
2227 5023 1.078918 CTCTCTCATTGCCACGCCA 60.079 57.895 0.00 0.00 0.00 5.69
2230 5026 1.642037 CTCTCATTGCCACGCCACTG 61.642 60.000 0.00 0.00 0.00 3.66
2231 5027 1.968017 CTCATTGCCACGCCACTGT 60.968 57.895 0.00 0.00 0.00 3.55
2302 5109 4.770010 ACAGAAAAAGGAAAGGTTGTGACA 59.230 37.500 0.00 0.00 0.00 3.58
2304 5111 6.070824 ACAGAAAAAGGAAAGGTTGTGACATT 60.071 34.615 0.00 0.00 0.00 2.71
2306 5113 7.649306 CAGAAAAAGGAAAGGTTGTGACATTAG 59.351 37.037 0.00 0.00 0.00 1.73
2334 5145 1.276989 CATTGGGCATGCAGGTTCTTT 59.723 47.619 21.36 0.00 0.00 2.52
2739 5554 4.427661 GTCTGAGCCAGCGCGACT 62.428 66.667 12.10 3.13 41.18 4.18
2740 5555 4.426112 TCTGAGCCAGCGCGACTG 62.426 66.667 12.10 16.92 46.77 3.51
2741 5556 4.731612 CTGAGCCAGCGCGACTGT 62.732 66.667 22.70 10.37 45.68 3.55
2767 5582 6.018588 GCTATCGACGATGATATACTGCTACT 60.019 42.308 20.42 0.00 30.79 2.57
2769 5584 6.644191 TCGACGATGATATACTGCTACTAC 57.356 41.667 0.00 0.00 0.00 2.73
2770 5585 6.396450 TCGACGATGATATACTGCTACTACT 58.604 40.000 0.00 0.00 0.00 2.57
2771 5586 7.542025 TCGACGATGATATACTGCTACTACTA 58.458 38.462 0.00 0.00 0.00 1.82
2772 5587 7.701501 TCGACGATGATATACTGCTACTACTAG 59.298 40.741 0.00 0.00 0.00 2.57
2773 5588 7.488792 CGACGATGATATACTGCTACTACTAGT 59.511 40.741 0.00 0.00 0.00 2.57
2774 5589 9.800433 GACGATGATATACTGCTACTACTAGTA 57.200 37.037 1.89 1.89 0.00 1.82
2847 5670 4.501571 CGAGGAATTGGTATCCCTACACTG 60.502 50.000 0.00 0.00 37.71 3.66
2917 5745 3.202151 CCCACCCATGATACCAACTAAGT 59.798 47.826 0.00 0.00 0.00 2.24
2918 5746 4.410883 CCCACCCATGATACCAACTAAGTA 59.589 45.833 0.00 0.00 0.00 2.24
2919 5747 5.073144 CCCACCCATGATACCAACTAAGTAT 59.927 44.000 0.00 0.00 33.11 2.12
2920 5748 5.997746 CCACCCATGATACCAACTAAGTATG 59.002 44.000 0.00 0.00 30.57 2.39
2921 5749 5.470098 CACCCATGATACCAACTAAGTATGC 59.530 44.000 0.00 0.00 30.57 3.14
2922 5750 5.369699 ACCCATGATACCAACTAAGTATGCT 59.630 40.000 0.00 0.00 30.57 3.79
2923 5751 6.557253 ACCCATGATACCAACTAAGTATGCTA 59.443 38.462 0.00 0.00 30.57 3.49
2924 5752 7.237679 ACCCATGATACCAACTAAGTATGCTAT 59.762 37.037 0.00 0.00 30.57 2.97
2925 5753 8.758829 CCCATGATACCAACTAAGTATGCTATA 58.241 37.037 0.00 0.00 30.57 1.31
2964 5792 3.706600 AAATAGGCCAAAGACGTACCA 57.293 42.857 5.01 0.00 0.00 3.25
2965 5793 3.926058 AATAGGCCAAAGACGTACCAT 57.074 42.857 5.01 0.00 0.00 3.55
2966 5794 5.362105 AAATAGGCCAAAGACGTACCATA 57.638 39.130 5.01 0.00 0.00 2.74
2967 5795 5.562298 AATAGGCCAAAGACGTACCATAT 57.438 39.130 5.01 0.00 0.00 1.78
2968 5796 3.926058 AGGCCAAAGACGTACCATATT 57.074 42.857 5.01 0.00 0.00 1.28
2969 5797 4.230745 AGGCCAAAGACGTACCATATTT 57.769 40.909 5.01 0.00 0.00 1.40
2970 5798 4.595986 AGGCCAAAGACGTACCATATTTT 58.404 39.130 5.01 0.00 0.00 1.82
2971 5799 5.014202 AGGCCAAAGACGTACCATATTTTT 58.986 37.500 5.01 0.00 0.00 1.94
2972 5800 6.181908 AGGCCAAAGACGTACCATATTTTTA 58.818 36.000 5.01 0.00 0.00 1.52
2973 5801 6.831868 AGGCCAAAGACGTACCATATTTTTAT 59.168 34.615 5.01 0.00 0.00 1.40
2974 5802 7.994334 AGGCCAAAGACGTACCATATTTTTATA 59.006 33.333 5.01 0.00 0.00 0.98
2975 5803 8.287503 GGCCAAAGACGTACCATATTTTTATAG 58.712 37.037 0.00 0.00 0.00 1.31
2976 5804 9.048446 GCCAAAGACGTACCATATTTTTATAGA 57.952 33.333 0.00 0.00 0.00 1.98
3002 5830 9.952188 AAGACAGAAAGTTTAATTACAAGAAGC 57.048 29.630 0.00 0.00 0.00 3.86
3003 5831 9.343539 AGACAGAAAGTTTAATTACAAGAAGCT 57.656 29.630 0.00 0.00 0.00 3.74
3006 5834 9.548208 CAGAAAGTTTAATTACAAGAAGCTAGC 57.452 33.333 6.62 6.62 0.00 3.42
3007 5835 8.443937 AGAAAGTTTAATTACAAGAAGCTAGCG 58.556 33.333 9.55 0.00 0.00 4.26
3008 5836 7.668525 AAGTTTAATTACAAGAAGCTAGCGT 57.331 32.000 9.55 5.81 0.00 5.07
3009 5837 8.767478 AAGTTTAATTACAAGAAGCTAGCGTA 57.233 30.769 9.55 2.03 0.00 4.42
3010 5838 8.408743 AGTTTAATTACAAGAAGCTAGCGTAG 57.591 34.615 9.55 2.46 0.00 3.51
3011 5839 8.248945 AGTTTAATTACAAGAAGCTAGCGTAGA 58.751 33.333 9.55 0.00 0.00 2.59
3012 5840 8.866956 GTTTAATTACAAGAAGCTAGCGTAGAA 58.133 33.333 9.55 0.00 0.00 2.10
3013 5841 9.595823 TTTAATTACAAGAAGCTAGCGTAGAAT 57.404 29.630 9.55 1.63 0.00 2.40
3014 5842 7.470289 AATTACAAGAAGCTAGCGTAGAATG 57.530 36.000 9.55 7.79 0.00 2.67
3015 5843 3.190874 ACAAGAAGCTAGCGTAGAATGC 58.809 45.455 9.55 0.00 0.00 3.56
3031 5859 3.411415 AATGCGAACATTCAAGCTAGC 57.589 42.857 6.62 6.62 43.08 3.42
3032 5860 1.086696 TGCGAACATTCAAGCTAGCC 58.913 50.000 12.13 0.00 0.00 3.93
3033 5861 0.026803 GCGAACATTCAAGCTAGCCG 59.973 55.000 12.13 5.46 0.00 5.52
3034 5862 1.640428 CGAACATTCAAGCTAGCCGA 58.360 50.000 12.13 5.64 0.00 5.54
3035 5863 1.324736 CGAACATTCAAGCTAGCCGAC 59.675 52.381 12.13 0.00 0.00 4.79
3036 5864 2.622436 GAACATTCAAGCTAGCCGACT 58.378 47.619 12.13 0.00 0.00 4.18
3037 5865 2.301577 ACATTCAAGCTAGCCGACTC 57.698 50.000 12.13 0.00 0.00 3.36
3038 5866 1.134670 ACATTCAAGCTAGCCGACTCC 60.135 52.381 12.13 0.00 0.00 3.85
3039 5867 1.134699 CATTCAAGCTAGCCGACTCCA 60.135 52.381 12.13 0.00 0.00 3.86
3040 5868 0.973632 TTCAAGCTAGCCGACTCCAA 59.026 50.000 12.13 0.00 0.00 3.53
3041 5869 0.246635 TCAAGCTAGCCGACTCCAAC 59.753 55.000 12.13 0.00 0.00 3.77
3042 5870 0.741221 CAAGCTAGCCGACTCCAACC 60.741 60.000 12.13 0.00 0.00 3.77
3043 5871 1.192146 AAGCTAGCCGACTCCAACCA 61.192 55.000 12.13 0.00 0.00 3.67
3044 5872 1.192146 AGCTAGCCGACTCCAACCAA 61.192 55.000 12.13 0.00 0.00 3.67
3045 5873 0.107654 GCTAGCCGACTCCAACCAAT 60.108 55.000 2.29 0.00 0.00 3.16
3046 5874 1.941325 CTAGCCGACTCCAACCAATC 58.059 55.000 0.00 0.00 0.00 2.67
3047 5875 1.207089 CTAGCCGACTCCAACCAATCA 59.793 52.381 0.00 0.00 0.00 2.57
3048 5876 0.400213 AGCCGACTCCAACCAATCAA 59.600 50.000 0.00 0.00 0.00 2.57
3049 5877 1.202879 AGCCGACTCCAACCAATCAAA 60.203 47.619 0.00 0.00 0.00 2.69
3050 5878 1.068541 GCCGACTCCAACCAATCAAAC 60.069 52.381 0.00 0.00 0.00 2.93
3051 5879 2.504367 CCGACTCCAACCAATCAAACT 58.496 47.619 0.00 0.00 0.00 2.66
3052 5880 3.670625 CCGACTCCAACCAATCAAACTA 58.329 45.455 0.00 0.00 0.00 2.24
3053 5881 4.069304 CCGACTCCAACCAATCAAACTAA 58.931 43.478 0.00 0.00 0.00 2.24
3054 5882 4.154195 CCGACTCCAACCAATCAAACTAAG 59.846 45.833 0.00 0.00 0.00 2.18
3055 5883 4.154195 CGACTCCAACCAATCAAACTAAGG 59.846 45.833 0.00 0.00 0.00 2.69
3056 5884 3.826729 ACTCCAACCAATCAAACTAAGGC 59.173 43.478 0.00 0.00 0.00 4.35
3057 5885 4.082125 CTCCAACCAATCAAACTAAGGCT 58.918 43.478 0.00 0.00 0.00 4.58
3058 5886 5.222048 ACTCCAACCAATCAAACTAAGGCTA 60.222 40.000 0.00 0.00 0.00 3.93
3059 5887 5.007682 TCCAACCAATCAAACTAAGGCTAC 58.992 41.667 0.00 0.00 0.00 3.58
3060 5888 5.010282 CCAACCAATCAAACTAAGGCTACT 58.990 41.667 0.00 0.00 0.00 2.57
3061 5889 5.123979 CCAACCAATCAAACTAAGGCTACTC 59.876 44.000 0.00 0.00 0.00 2.59
3062 5890 5.763876 ACCAATCAAACTAAGGCTACTCT 57.236 39.130 0.00 0.00 0.00 3.24
3217 6045 0.382515 GCAACGGCCTGTTAAACACA 59.617 50.000 11.71 0.00 39.29 3.72
3222 6050 0.820482 GGCCTGTTAAACACACGGGT 60.820 55.000 0.00 0.00 42.13 5.28
3247 6075 1.304713 CTGCTTCCACAAGGCCCAT 60.305 57.895 0.00 0.00 33.74 4.00
3336 6165 4.095946 AGCCACCAATCCATAAATGTGTT 58.904 39.130 0.00 0.00 0.00 3.32
3446 6275 2.158957 TGCTCGACATTATCTTGGTCCC 60.159 50.000 0.00 0.00 0.00 4.46
3466 6295 0.610232 GGAGGCATGTGAAGCAAGGT 60.610 55.000 0.00 0.00 0.00 3.50
3497 6326 0.322366 TTGCAATCCATGTCTGGCGA 60.322 50.000 0.00 0.00 42.80 5.54
3506 6335 3.838271 GTCTGGCGAGGCGATCCA 61.838 66.667 0.00 0.00 33.74 3.41
3577 6406 2.616458 GGGTGCCCAACTCCTCCAT 61.616 63.158 1.66 0.00 35.81 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.746949 CTGCGTCCCTGCCCATCTC 62.747 68.421 0.00 0.00 0.00 2.75
1 2 3.790437 CTGCGTCCCTGCCCATCT 61.790 66.667 0.00 0.00 0.00 2.90
2 3 4.864334 CCTGCGTCCCTGCCCATC 62.864 72.222 0.00 0.00 0.00 3.51
7 8 4.660938 AAACCCCTGCGTCCCTGC 62.661 66.667 0.00 0.00 0.00 4.85
8 9 2.359975 GAAACCCCTGCGTCCCTG 60.360 66.667 0.00 0.00 0.00 4.45
9 10 4.016706 CGAAACCCCTGCGTCCCT 62.017 66.667 0.00 0.00 0.00 4.20
15 16 2.798445 ATTTCCCCCGAAACCCCTGC 62.798 60.000 0.00 0.00 40.74 4.85
16 17 0.626916 TATTTCCCCCGAAACCCCTG 59.373 55.000 0.00 0.00 40.74 4.45
17 18 1.006281 GTTATTTCCCCCGAAACCCCT 59.994 52.381 0.00 0.00 40.74 4.79
18 19 1.006281 AGTTATTTCCCCCGAAACCCC 59.994 52.381 0.00 0.00 40.74 4.95
19 20 2.097036 CAGTTATTTCCCCCGAAACCC 58.903 52.381 0.00 0.00 40.74 4.11
20 21 1.475280 GCAGTTATTTCCCCCGAAACC 59.525 52.381 0.00 0.00 40.74 3.27
21 22 1.475280 GGCAGTTATTTCCCCCGAAAC 59.525 52.381 0.00 0.00 40.74 2.78
22 23 1.617533 GGGCAGTTATTTCCCCCGAAA 60.618 52.381 0.00 0.00 42.10 3.46
23 24 0.033894 GGGCAGTTATTTCCCCCGAA 60.034 55.000 0.00 0.00 33.91 4.30
24 25 1.610873 GGGCAGTTATTTCCCCCGA 59.389 57.895 0.00 0.00 33.91 5.14
25 26 4.252983 GGGCAGTTATTTCCCCCG 57.747 61.111 0.00 0.00 33.91 5.73
26 27 1.455032 CCGGGCAGTTATTTCCCCC 60.455 63.158 0.00 0.00 36.69 5.40
27 28 0.750546 GTCCGGGCAGTTATTTCCCC 60.751 60.000 0.00 0.00 36.69 4.81
28 29 0.750546 GGTCCGGGCAGTTATTTCCC 60.751 60.000 9.07 0.00 36.68 3.97
29 30 0.750546 GGGTCCGGGCAGTTATTTCC 60.751 60.000 9.07 0.00 0.00 3.13
30 31 0.255033 AGGGTCCGGGCAGTTATTTC 59.745 55.000 9.07 0.00 0.00 2.17
31 32 1.211212 GTAGGGTCCGGGCAGTTATTT 59.789 52.381 9.07 0.00 0.00 1.40
32 33 0.835276 GTAGGGTCCGGGCAGTTATT 59.165 55.000 9.07 0.00 0.00 1.40
33 34 1.052694 GGTAGGGTCCGGGCAGTTAT 61.053 60.000 9.07 0.00 0.00 1.89
34 35 1.686800 GGTAGGGTCCGGGCAGTTA 60.687 63.158 9.07 0.00 0.00 2.24
35 36 3.007323 GGTAGGGTCCGGGCAGTT 61.007 66.667 9.07 0.00 0.00 3.16
43 44 2.682494 TGTCTGGCGGTAGGGTCC 60.682 66.667 0.00 0.00 0.00 4.46
44 45 2.227089 CTGTGTCTGGCGGTAGGGTC 62.227 65.000 0.00 0.00 0.00 4.46
45 46 2.203728 TGTGTCTGGCGGTAGGGT 60.204 61.111 0.00 0.00 0.00 4.34
46 47 2.579201 CTGTGTCTGGCGGTAGGG 59.421 66.667 0.00 0.00 0.00 3.53
47 48 2.579201 CCTGTGTCTGGCGGTAGG 59.421 66.667 0.00 0.00 0.00 3.18
48 49 2.125512 GCCTGTGTCTGGCGGTAG 60.126 66.667 2.25 0.00 38.59 3.18
53 54 1.815421 CATACCGCCTGTGTCTGGC 60.815 63.158 7.44 7.44 43.55 4.85
54 55 1.153369 CCATACCGCCTGTGTCTGG 60.153 63.158 0.00 0.00 0.00 3.86
55 56 0.036388 AACCATACCGCCTGTGTCTG 60.036 55.000 0.00 0.00 0.00 3.51
56 57 1.480954 CTAACCATACCGCCTGTGTCT 59.519 52.381 0.00 0.00 0.00 3.41
57 58 1.479323 TCTAACCATACCGCCTGTGTC 59.521 52.381 0.00 0.00 0.00 3.67
58 59 1.206371 GTCTAACCATACCGCCTGTGT 59.794 52.381 0.00 0.00 0.00 3.72
59 60 1.206132 TGTCTAACCATACCGCCTGTG 59.794 52.381 0.00 0.00 0.00 3.66
60 61 1.480954 CTGTCTAACCATACCGCCTGT 59.519 52.381 0.00 0.00 0.00 4.00
61 62 1.202533 CCTGTCTAACCATACCGCCTG 60.203 57.143 0.00 0.00 0.00 4.85
62 63 1.120530 CCTGTCTAACCATACCGCCT 58.879 55.000 0.00 0.00 0.00 5.52
63 64 0.532196 GCCTGTCTAACCATACCGCC 60.532 60.000 0.00 0.00 0.00 6.13
64 65 0.464452 AGCCTGTCTAACCATACCGC 59.536 55.000 0.00 0.00 0.00 5.68
65 66 2.035576 GGTAGCCTGTCTAACCATACCG 59.964 54.545 0.00 0.00 0.00 4.02
66 67 2.035576 CGGTAGCCTGTCTAACCATACC 59.964 54.545 0.00 0.00 31.10 2.73
67 68 2.545322 GCGGTAGCCTGTCTAACCATAC 60.545 54.545 0.00 0.00 37.42 2.39
68 69 1.684983 GCGGTAGCCTGTCTAACCATA 59.315 52.381 0.00 0.00 37.42 2.74
69 70 0.464452 GCGGTAGCCTGTCTAACCAT 59.536 55.000 0.00 0.00 37.42 3.55
70 71 1.895238 GCGGTAGCCTGTCTAACCA 59.105 57.895 0.00 0.00 37.42 3.67
71 72 4.829588 GCGGTAGCCTGTCTAACC 57.170 61.111 0.00 0.00 37.42 2.85
96 97 2.201022 ATCGCACCCTACCGCTAGG 61.201 63.158 0.00 0.00 45.13 3.02
97 98 1.007271 CATCGCACCCTACCGCTAG 60.007 63.158 0.00 0.00 0.00 3.42
98 99 1.038681 TTCATCGCACCCTACCGCTA 61.039 55.000 0.00 0.00 0.00 4.26
99 100 2.298158 CTTCATCGCACCCTACCGCT 62.298 60.000 0.00 0.00 0.00 5.52
100 101 1.883084 CTTCATCGCACCCTACCGC 60.883 63.158 0.00 0.00 0.00 5.68
101 102 1.227263 CCTTCATCGCACCCTACCG 60.227 63.158 0.00 0.00 0.00 4.02
102 103 1.146263 CCCTTCATCGCACCCTACC 59.854 63.158 0.00 0.00 0.00 3.18
103 104 1.146263 CCCCTTCATCGCACCCTAC 59.854 63.158 0.00 0.00 0.00 3.18
104 105 2.070039 CCCCCTTCATCGCACCCTA 61.070 63.158 0.00 0.00 0.00 3.53
105 106 3.411517 CCCCCTTCATCGCACCCT 61.412 66.667 0.00 0.00 0.00 4.34
106 107 3.407967 TCCCCCTTCATCGCACCC 61.408 66.667 0.00 0.00 0.00 4.61
107 108 2.124695 GTCCCCCTTCATCGCACC 60.125 66.667 0.00 0.00 0.00 5.01
108 109 2.511600 CGTCCCCCTTCATCGCAC 60.512 66.667 0.00 0.00 0.00 5.34
109 110 3.781307 CCGTCCCCCTTCATCGCA 61.781 66.667 0.00 0.00 0.00 5.10
111 112 4.891727 CGCCGTCCCCCTTCATCG 62.892 72.222 0.00 0.00 0.00 3.84
112 113 4.547367 CCGCCGTCCCCCTTCATC 62.547 72.222 0.00 0.00 0.00 2.92
138 139 2.860628 CTTATCCACGTCAGCGCGC 61.861 63.158 26.66 26.66 42.83 6.86
139 140 0.248336 TACTTATCCACGTCAGCGCG 60.248 55.000 0.00 0.00 42.83 6.86
140 141 1.197910 GTACTTATCCACGTCAGCGC 58.802 55.000 0.00 0.00 42.83 5.92
141 142 1.535437 GGGTACTTATCCACGTCAGCG 60.535 57.143 0.00 0.00 44.93 5.18
142 143 1.755380 AGGGTACTTATCCACGTCAGC 59.245 52.381 0.00 0.00 0.00 4.26
143 144 3.317430 GGTAGGGTACTTATCCACGTCAG 59.683 52.174 0.00 0.00 0.00 3.51
144 145 3.290710 GGTAGGGTACTTATCCACGTCA 58.709 50.000 0.00 0.00 0.00 4.35
145 146 3.067320 GTGGTAGGGTACTTATCCACGTC 59.933 52.174 12.22 0.00 34.61 4.34
146 147 3.026694 GTGGTAGGGTACTTATCCACGT 58.973 50.000 12.22 0.00 34.61 4.49
147 148 2.363359 GGTGGTAGGGTACTTATCCACG 59.637 54.545 17.35 0.00 39.91 4.94
148 149 3.377573 TGGTGGTAGGGTACTTATCCAC 58.622 50.000 16.40 16.40 39.13 4.02
149 150 3.780516 TGGTGGTAGGGTACTTATCCA 57.219 47.619 0.00 0.00 0.00 3.41
150 151 3.390311 CCTTGGTGGTAGGGTACTTATCC 59.610 52.174 0.00 0.00 0.00 2.59
151 152 3.390311 CCCTTGGTGGTAGGGTACTTATC 59.610 52.174 0.00 0.00 46.16 1.75
152 153 3.390819 CCCTTGGTGGTAGGGTACTTAT 58.609 50.000 0.00 0.00 46.16 1.73
153 154 2.836667 CCCTTGGTGGTAGGGTACTTA 58.163 52.381 0.00 0.00 46.16 2.24
154 155 1.665137 CCCTTGGTGGTAGGGTACTT 58.335 55.000 0.00 0.00 46.16 2.24
155 156 3.411875 CCCTTGGTGGTAGGGTACT 57.588 57.895 0.00 0.00 46.16 2.73
160 161 2.614013 AGGGCCCTTGGTGGTAGG 60.614 66.667 22.28 0.00 0.00 3.18
161 162 2.677228 CAGGGCCCTTGGTGGTAG 59.323 66.667 26.10 3.83 0.00 3.18
162 163 2.938798 CCAGGGCCCTTGGTGGTA 60.939 66.667 26.10 0.00 0.00 3.25
168 169 4.489771 CTACCGCCAGGGCCCTTG 62.490 72.222 26.10 22.05 43.47 3.61
174 175 4.162690 GACAGCCTACCGCCAGGG 62.163 72.222 3.06 0.00 43.47 4.45
175 176 1.327690 TTAGACAGCCTACCGCCAGG 61.328 60.000 0.00 0.00 45.13 4.45
176 177 0.179108 GTTAGACAGCCTACCGCCAG 60.179 60.000 0.00 0.00 38.78 4.85
177 178 1.610554 GGTTAGACAGCCTACCGCCA 61.611 60.000 0.00 0.00 38.78 5.69
178 179 1.143401 GGTTAGACAGCCTACCGCC 59.857 63.158 0.00 0.00 38.78 6.13
179 180 1.143401 GGGTTAGACAGCCTACCGC 59.857 63.158 0.00 0.00 40.32 5.68
185 186 1.143401 GCGGTAGGGTTAGACAGCC 59.857 63.158 0.00 0.00 44.40 4.85
186 187 1.143401 GGCGGTAGGGTTAGACAGC 59.857 63.158 0.00 0.00 36.22 4.40
187 188 0.460311 CTGGCGGTAGGGTTAGACAG 59.540 60.000 0.00 0.00 0.00 3.51
188 189 0.040058 TCTGGCGGTAGGGTTAGACA 59.960 55.000 0.00 0.00 0.00 3.41
189 190 0.745468 CTCTGGCGGTAGGGTTAGAC 59.255 60.000 0.00 0.00 0.00 2.59
190 191 1.041447 GCTCTGGCGGTAGGGTTAGA 61.041 60.000 0.00 0.00 0.00 2.10
191 192 1.442148 GCTCTGGCGGTAGGGTTAG 59.558 63.158 0.00 0.00 0.00 2.34
192 193 2.062177 GGCTCTGGCGGTAGGGTTA 61.062 63.158 0.00 0.00 39.81 2.85
193 194 3.400054 GGCTCTGGCGGTAGGGTT 61.400 66.667 0.00 0.00 39.81 4.11
197 198 3.854669 CAGGGGCTCTGGCGGTAG 61.855 72.222 6.45 0.00 39.76 3.18
243 244 7.953005 AATTTTGACCCTGGTTTGAATTTTT 57.047 28.000 0.00 0.00 0.00 1.94
244 245 7.953005 AAATTTTGACCCTGGTTTGAATTTT 57.047 28.000 9.64 4.43 0.00 1.82
245 246 9.639563 ATTAAATTTTGACCCTGGTTTGAATTT 57.360 25.926 15.40 15.40 32.86 1.82
246 247 9.639563 AATTAAATTTTGACCCTGGTTTGAATT 57.360 25.926 0.00 0.00 0.00 2.17
247 248 9.639563 AAATTAAATTTTGACCCTGGTTTGAAT 57.360 25.926 0.00 0.00 0.00 2.57
248 249 9.467796 AAAATTAAATTTTGACCCTGGTTTGAA 57.532 25.926 0.00 0.00 40.69 2.69
270 271 9.454859 TGTTTTGACCCTTTTGACAAATAAAAT 57.545 25.926 0.50 0.00 33.38 1.82
271 272 8.722394 GTGTTTTGACCCTTTTGACAAATAAAA 58.278 29.630 0.50 1.81 33.38 1.52
272 273 7.063544 CGTGTTTTGACCCTTTTGACAAATAAA 59.936 33.333 0.50 0.00 33.38 1.40
273 274 6.531948 CGTGTTTTGACCCTTTTGACAAATAA 59.468 34.615 0.50 0.00 33.38 1.40
274 275 6.037098 CGTGTTTTGACCCTTTTGACAAATA 58.963 36.000 0.50 0.00 33.38 1.40
275 276 4.867608 CGTGTTTTGACCCTTTTGACAAAT 59.132 37.500 0.50 0.00 33.38 2.32
276 277 4.022242 TCGTGTTTTGACCCTTTTGACAAA 60.022 37.500 0.00 0.00 0.00 2.83
277 278 3.506455 TCGTGTTTTGACCCTTTTGACAA 59.494 39.130 0.00 0.00 0.00 3.18
278 279 3.082548 TCGTGTTTTGACCCTTTTGACA 58.917 40.909 0.00 0.00 0.00 3.58
279 280 3.768468 TCGTGTTTTGACCCTTTTGAC 57.232 42.857 0.00 0.00 0.00 3.18
280 281 4.785511 TTTCGTGTTTTGACCCTTTTGA 57.214 36.364 0.00 0.00 0.00 2.69
281 282 6.415798 AAATTTCGTGTTTTGACCCTTTTG 57.584 33.333 0.00 0.00 0.00 2.44
282 283 6.256975 GCTAAATTTCGTGTTTTGACCCTTTT 59.743 34.615 0.00 0.00 0.00 2.27
283 284 5.751509 GCTAAATTTCGTGTTTTGACCCTTT 59.248 36.000 0.00 0.00 0.00 3.11
284 285 5.286438 GCTAAATTTCGTGTTTTGACCCTT 58.714 37.500 0.00 0.00 0.00 3.95
285 286 4.261867 GGCTAAATTTCGTGTTTTGACCCT 60.262 41.667 0.00 0.00 0.00 4.34
286 287 3.985279 GGCTAAATTTCGTGTTTTGACCC 59.015 43.478 0.00 0.00 0.00 4.46
287 288 3.666797 CGGCTAAATTTCGTGTTTTGACC 59.333 43.478 0.00 0.00 0.00 4.02
288 289 3.118972 GCGGCTAAATTTCGTGTTTTGAC 59.881 43.478 0.00 0.00 0.00 3.18
289 290 3.243101 TGCGGCTAAATTTCGTGTTTTGA 60.243 39.130 0.00 0.00 0.00 2.69
290 291 3.046390 TGCGGCTAAATTTCGTGTTTTG 58.954 40.909 0.00 0.00 0.00 2.44
291 292 3.047093 GTGCGGCTAAATTTCGTGTTTT 58.953 40.909 0.00 0.00 0.00 2.43
292 293 2.033550 TGTGCGGCTAAATTTCGTGTTT 59.966 40.909 0.00 0.00 0.00 2.83
293 294 1.604755 TGTGCGGCTAAATTTCGTGTT 59.395 42.857 0.00 0.00 0.00 3.32
294 295 1.231221 TGTGCGGCTAAATTTCGTGT 58.769 45.000 0.00 0.00 0.00 4.49
295 296 2.095969 TCTTGTGCGGCTAAATTTCGTG 60.096 45.455 0.00 0.00 0.00 4.35
296 297 2.147958 TCTTGTGCGGCTAAATTTCGT 58.852 42.857 0.00 0.00 0.00 3.85
297 298 2.892373 TCTTGTGCGGCTAAATTTCG 57.108 45.000 0.00 0.00 0.00 3.46
298 299 2.908626 CGTTCTTGTGCGGCTAAATTTC 59.091 45.455 0.00 0.00 0.00 2.17
299 300 2.351350 CCGTTCTTGTGCGGCTAAATTT 60.351 45.455 0.00 0.00 41.53 1.82
300 301 1.199097 CCGTTCTTGTGCGGCTAAATT 59.801 47.619 0.00 0.00 41.53 1.82
301 302 0.802494 CCGTTCTTGTGCGGCTAAAT 59.198 50.000 0.00 0.00 41.53 1.40
302 303 0.249953 TCCGTTCTTGTGCGGCTAAA 60.250 50.000 0.00 0.00 46.79 1.85
303 304 0.036765 ATCCGTTCTTGTGCGGCTAA 60.037 50.000 0.00 0.00 46.79 3.09
304 305 0.459585 GATCCGTTCTTGTGCGGCTA 60.460 55.000 0.00 0.00 46.79 3.93
305 306 1.741770 GATCCGTTCTTGTGCGGCT 60.742 57.895 0.00 0.00 46.79 5.52
306 307 1.573829 TTGATCCGTTCTTGTGCGGC 61.574 55.000 0.00 0.00 46.79 6.53
308 309 1.725931 GCTTTGATCCGTTCTTGTGCG 60.726 52.381 0.00 0.00 0.00 5.34
344 345 0.904649 TGAGAGGTTGATGATGGCGT 59.095 50.000 0.00 0.00 0.00 5.68
347 348 5.391310 CGAGTTTTTGAGAGGTTGATGATGG 60.391 44.000 0.00 0.00 0.00 3.51
397 398 5.673337 TTTTGAGGAGTTGTTTCAGATCG 57.327 39.130 0.00 0.00 0.00 3.69
483 488 0.969149 TCATTCGACAGACCAGCAGT 59.031 50.000 0.00 0.00 0.00 4.40
484 489 2.084610 TTCATTCGACAGACCAGCAG 57.915 50.000 0.00 0.00 0.00 4.24
485 490 2.542020 TTTCATTCGACAGACCAGCA 57.458 45.000 0.00 0.00 0.00 4.41
558 566 3.247173 CGGATCGGAGTACAGTACAGTAC 59.753 52.174 18.11 18.11 43.61 2.73
559 567 3.132824 TCGGATCGGAGTACAGTACAGTA 59.867 47.826 13.37 0.00 0.00 2.74
560 568 2.093288 TCGGATCGGAGTACAGTACAGT 60.093 50.000 13.37 0.00 0.00 3.55
561 569 2.558378 TCGGATCGGAGTACAGTACAG 58.442 52.381 13.37 4.29 0.00 2.74
562 570 2.696989 TCGGATCGGAGTACAGTACA 57.303 50.000 13.37 0.00 0.00 2.90
905 920 2.804572 CGAGTGGTGGATGCTAAGATGG 60.805 54.545 0.00 0.00 0.00 3.51
929 944 2.584835 TGGCTAGTGCTGGAAACAAT 57.415 45.000 0.00 0.00 42.06 2.71
930 945 2.229792 CTTGGCTAGTGCTGGAAACAA 58.770 47.619 0.00 0.00 42.06 2.83
932 947 0.523519 GCTTGGCTAGTGCTGGAAAC 59.476 55.000 0.00 0.00 39.59 2.78
933 948 0.609131 GGCTTGGCTAGTGCTGGAAA 60.609 55.000 0.00 0.00 39.59 3.13
936 951 1.303561 TTGGCTTGGCTAGTGCTGG 60.304 57.895 0.00 0.00 39.59 4.85
937 952 0.321919 TCTTGGCTTGGCTAGTGCTG 60.322 55.000 5.70 0.00 39.59 4.41
938 953 0.401738 TTCTTGGCTTGGCTAGTGCT 59.598 50.000 5.70 0.00 39.59 4.40
939 954 0.807496 CTTCTTGGCTTGGCTAGTGC 59.193 55.000 5.70 0.00 38.76 4.40
968 988 2.131067 CCGGCCTCTCTTCCTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
994 1014 0.741221 GCGGTCGCCTTCATTCTCTT 60.741 55.000 3.73 0.00 34.56 2.85
995 1015 1.153549 GCGGTCGCCTTCATTCTCT 60.154 57.895 3.73 0.00 34.56 3.10
996 1016 2.517450 CGCGGTCGCCTTCATTCTC 61.517 63.158 9.85 0.00 37.98 2.87
997 1017 2.509336 CGCGGTCGCCTTCATTCT 60.509 61.111 9.85 0.00 37.98 2.40
998 1018 3.564027 CCGCGGTCGCCTTCATTC 61.564 66.667 19.50 0.00 37.98 2.67
1332 1352 2.237751 GGTATACGGCTGCACTGCG 61.238 63.158 0.50 0.00 0.00 5.18
1554 1574 3.187955 ACGGAGTAGGAGTGGTAGC 57.812 57.895 0.00 0.00 41.94 3.58
1603 1623 1.149101 ATACGAAAGGGGGATGGCAT 58.851 50.000 0.00 0.00 0.00 4.40
1605 1625 1.605753 GAATACGAAAGGGGGATGGC 58.394 55.000 0.00 0.00 0.00 4.40
1659 1915 8.837389 ACTAACTAAAGCTCGTTTTCTCATTTT 58.163 29.630 0.00 0.00 0.00 1.82
1714 2010 8.357402 AGTCAAAAATTAATTAGCCTTTCACGT 58.643 29.630 0.01 0.00 0.00 4.49
1776 2072 4.989797 TGGCATTTTTGAGCACATAAGTTG 59.010 37.500 0.00 0.00 0.00 3.16
1782 2078 7.148205 GGAATAAAATGGCATTTTTGAGCACAT 60.148 33.333 35.11 21.31 42.13 3.21
1808 2202 9.650539 TGTATCATTGTAAATGTTTTTGGATGG 57.349 29.630 0.26 0.00 0.00 3.51
1953 2849 0.035317 TCTTAGGTGTGCTGTGCTGG 59.965 55.000 0.00 0.00 0.00 4.85
1960 2856 1.141881 CGGCGATCTTAGGTGTGCT 59.858 57.895 0.00 0.00 0.00 4.40
2101 4897 0.032678 CCATGAGCCTGCCTAGTACG 59.967 60.000 0.00 0.00 0.00 3.67
2144 4940 4.107051 GCATGGACGGTGCAGTGC 62.107 66.667 8.58 8.58 42.08 4.40
2227 5023 8.441312 TTCTTTTACGAGGACATTTTTACAGT 57.559 30.769 0.00 0.00 0.00 3.55
2230 5026 9.940166 TTTCTTCTTTTACGAGGACATTTTTAC 57.060 29.630 0.00 0.00 0.00 2.01
2280 5087 5.323371 TGTCACAACCTTTCCTTTTTCTG 57.677 39.130 0.00 0.00 0.00 3.02
2290 5097 4.021192 CCCAATGCTAATGTCACAACCTTT 60.021 41.667 0.00 0.00 0.00 3.11
2291 5098 3.511146 CCCAATGCTAATGTCACAACCTT 59.489 43.478 0.00 0.00 0.00 3.50
2302 5109 0.760572 GCCCAATGCCCAATGCTAAT 59.239 50.000 0.00 0.00 42.00 1.73
2304 5111 0.398806 ATGCCCAATGCCCAATGCTA 60.399 50.000 0.00 0.00 42.00 3.49
2306 5113 1.525077 CATGCCCAATGCCCAATGC 60.525 57.895 0.00 0.00 40.16 3.56
2334 5145 3.620300 GATCGGCGTGTCGTCCACA 62.620 63.158 6.85 0.00 44.78 4.17
2735 5550 1.003866 TCATCGTCGATAGCACAGTCG 60.004 52.381 7.56 0.00 39.11 4.18
2736 5551 2.757686 TCATCGTCGATAGCACAGTC 57.242 50.000 7.56 0.00 0.00 3.51
2737 5552 5.644206 AGTATATCATCGTCGATAGCACAGT 59.356 40.000 7.56 0.00 31.56 3.55
2738 5553 5.962423 CAGTATATCATCGTCGATAGCACAG 59.038 44.000 7.56 0.00 31.56 3.66
2739 5554 5.673818 GCAGTATATCATCGTCGATAGCACA 60.674 44.000 7.56 0.00 31.56 4.57
2740 5555 4.731000 GCAGTATATCATCGTCGATAGCAC 59.269 45.833 7.56 2.47 31.56 4.40
2741 5556 4.636206 AGCAGTATATCATCGTCGATAGCA 59.364 41.667 7.56 0.00 31.56 3.49
2742 5557 5.163302 AGCAGTATATCATCGTCGATAGC 57.837 43.478 7.56 2.85 31.56 2.97
2743 5558 7.471657 AGTAGCAGTATATCATCGTCGATAG 57.528 40.000 7.56 3.07 31.56 2.08
2744 5559 8.196103 AGTAGTAGCAGTATATCATCGTCGATA 58.804 37.037 7.56 0.00 32.56 2.92
2745 5560 7.042950 AGTAGTAGCAGTATATCATCGTCGAT 58.957 38.462 0.75 0.75 0.00 3.59
2746 5561 6.396450 AGTAGTAGCAGTATATCATCGTCGA 58.604 40.000 0.00 0.00 0.00 4.20
2747 5562 6.650239 AGTAGTAGCAGTATATCATCGTCG 57.350 41.667 0.00 0.00 0.00 5.12
2748 5563 8.706492 ACTAGTAGTAGCAGTATATCATCGTC 57.294 38.462 0.00 0.00 0.00 4.20
2767 5582 5.104374 GCGGCACAACAATTACTACTAGTA 58.896 41.667 1.89 1.89 0.00 1.82
2769 5584 4.032900 CAGCGGCACAACAATTACTACTAG 59.967 45.833 1.45 0.00 0.00 2.57
2770 5585 3.930229 CAGCGGCACAACAATTACTACTA 59.070 43.478 1.45 0.00 0.00 1.82
2771 5586 2.742053 CAGCGGCACAACAATTACTACT 59.258 45.455 1.45 0.00 0.00 2.57
2772 5587 2.159572 CCAGCGGCACAACAATTACTAC 60.160 50.000 1.45 0.00 0.00 2.73
2773 5588 2.080693 CCAGCGGCACAACAATTACTA 58.919 47.619 1.45 0.00 0.00 1.82
2774 5589 0.881118 CCAGCGGCACAACAATTACT 59.119 50.000 1.45 0.00 0.00 2.24
2775 5590 0.596082 ACCAGCGGCACAACAATTAC 59.404 50.000 1.45 0.00 0.00 1.89
2776 5591 0.878416 GACCAGCGGCACAACAATTA 59.122 50.000 1.45 0.00 0.00 1.40
2777 5592 1.659794 GACCAGCGGCACAACAATT 59.340 52.632 1.45 0.00 0.00 2.32
2778 5593 2.616330 CGACCAGCGGCACAACAAT 61.616 57.895 1.45 0.00 36.03 2.71
2847 5670 3.060978 CATGAGCATACACACACATGC 57.939 47.619 0.00 0.00 46.35 4.06
2899 5727 5.869579 AGCATACTTAGTTGGTATCATGGG 58.130 41.667 0.00 0.00 0.00 4.00
2942 5770 4.400120 TGGTACGTCTTTGGCCTATTTTT 58.600 39.130 3.32 0.00 0.00 1.94
2943 5771 4.023726 TGGTACGTCTTTGGCCTATTTT 57.976 40.909 3.32 0.00 0.00 1.82
2944 5772 3.706600 TGGTACGTCTTTGGCCTATTT 57.293 42.857 3.32 0.00 0.00 1.40
2945 5773 3.926058 ATGGTACGTCTTTGGCCTATT 57.074 42.857 3.32 0.00 0.00 1.73
2946 5774 5.562298 AATATGGTACGTCTTTGGCCTAT 57.438 39.130 3.32 0.00 0.00 2.57
2947 5775 5.362105 AAATATGGTACGTCTTTGGCCTA 57.638 39.130 3.32 0.00 0.00 3.93
2948 5776 3.926058 AATATGGTACGTCTTTGGCCT 57.074 42.857 3.32 0.00 0.00 5.19
2949 5777 4.976224 AAAATATGGTACGTCTTTGGCC 57.024 40.909 0.00 0.00 0.00 5.36
2950 5778 9.048446 TCTATAAAAATATGGTACGTCTTTGGC 57.952 33.333 0.00 0.00 0.00 4.52
2976 5804 9.952188 GCTTCTTGTAATTAAACTTTCTGTCTT 57.048 29.630 0.00 0.00 0.00 3.01
2977 5805 9.343539 AGCTTCTTGTAATTAAACTTTCTGTCT 57.656 29.630 0.00 0.00 0.00 3.41
2980 5808 9.548208 GCTAGCTTCTTGTAATTAAACTTTCTG 57.452 33.333 7.70 0.00 0.00 3.02
2981 5809 8.443937 CGCTAGCTTCTTGTAATTAAACTTTCT 58.556 33.333 13.93 0.00 0.00 2.52
2982 5810 8.228464 ACGCTAGCTTCTTGTAATTAAACTTTC 58.772 33.333 13.93 0.00 0.00 2.62
2983 5811 8.095937 ACGCTAGCTTCTTGTAATTAAACTTT 57.904 30.769 13.93 0.00 0.00 2.66
2984 5812 7.668525 ACGCTAGCTTCTTGTAATTAAACTT 57.331 32.000 13.93 0.00 0.00 2.66
2985 5813 8.248945 TCTACGCTAGCTTCTTGTAATTAAACT 58.751 33.333 13.93 0.00 0.00 2.66
2986 5814 8.403606 TCTACGCTAGCTTCTTGTAATTAAAC 57.596 34.615 13.93 0.00 0.00 2.01
2987 5815 8.991243 TTCTACGCTAGCTTCTTGTAATTAAA 57.009 30.769 13.93 0.00 0.00 1.52
2988 5816 9.031360 CATTCTACGCTAGCTTCTTGTAATTAA 57.969 33.333 13.93 3.02 0.00 1.40
2989 5817 7.169308 GCATTCTACGCTAGCTTCTTGTAATTA 59.831 37.037 13.93 0.00 0.00 1.40
2990 5818 6.018669 GCATTCTACGCTAGCTTCTTGTAATT 60.019 38.462 13.93 0.00 0.00 1.40
2991 5819 5.463724 GCATTCTACGCTAGCTTCTTGTAAT 59.536 40.000 13.93 0.93 0.00 1.89
2992 5820 4.804139 GCATTCTACGCTAGCTTCTTGTAA 59.196 41.667 13.93 0.00 0.00 2.41
2993 5821 4.360563 GCATTCTACGCTAGCTTCTTGTA 58.639 43.478 13.93 6.22 0.00 2.41
2994 5822 3.190874 GCATTCTACGCTAGCTTCTTGT 58.809 45.455 13.93 5.27 0.00 3.16
2995 5823 2.217393 CGCATTCTACGCTAGCTTCTTG 59.783 50.000 13.93 4.23 0.00 3.02
2996 5824 2.099263 TCGCATTCTACGCTAGCTTCTT 59.901 45.455 13.93 0.00 0.00 2.52
2997 5825 1.676529 TCGCATTCTACGCTAGCTTCT 59.323 47.619 13.93 0.00 0.00 2.85
2998 5826 2.121116 TCGCATTCTACGCTAGCTTC 57.879 50.000 13.93 0.00 0.00 3.86
2999 5827 2.194271 GTTCGCATTCTACGCTAGCTT 58.806 47.619 13.93 5.97 0.00 3.74
3000 5828 1.134367 TGTTCGCATTCTACGCTAGCT 59.866 47.619 13.93 2.46 0.00 3.32
3001 5829 1.556564 TGTTCGCATTCTACGCTAGC 58.443 50.000 4.06 4.06 0.00 3.42
3012 5840 1.672881 GGCTAGCTTGAATGTTCGCAT 59.327 47.619 15.72 0.00 40.03 4.73
3013 5841 1.086696 GGCTAGCTTGAATGTTCGCA 58.913 50.000 15.72 0.00 0.00 5.10
3014 5842 0.026803 CGGCTAGCTTGAATGTTCGC 59.973 55.000 15.72 0.00 0.00 4.70
3015 5843 1.324736 GTCGGCTAGCTTGAATGTTCG 59.675 52.381 15.72 6.29 0.00 3.95
3016 5844 2.605366 GAGTCGGCTAGCTTGAATGTTC 59.395 50.000 15.72 5.93 0.00 3.18
3017 5845 2.622436 GAGTCGGCTAGCTTGAATGTT 58.378 47.619 15.72 0.60 0.00 2.71
3018 5846 1.134670 GGAGTCGGCTAGCTTGAATGT 60.135 52.381 15.72 1.84 0.00 2.71
3019 5847 1.134699 TGGAGTCGGCTAGCTTGAATG 60.135 52.381 15.72 0.00 0.00 2.67
3020 5848 1.195115 TGGAGTCGGCTAGCTTGAAT 58.805 50.000 15.72 12.20 0.00 2.57
3021 5849 0.973632 TTGGAGTCGGCTAGCTTGAA 59.026 50.000 15.72 0.00 0.00 2.69
3022 5850 0.246635 GTTGGAGTCGGCTAGCTTGA 59.753 55.000 15.72 10.35 0.00 3.02
3023 5851 0.741221 GGTTGGAGTCGGCTAGCTTG 60.741 60.000 15.72 7.94 0.00 4.01
3024 5852 1.192146 TGGTTGGAGTCGGCTAGCTT 61.192 55.000 15.72 0.00 0.00 3.74
3025 5853 1.192146 TTGGTTGGAGTCGGCTAGCT 61.192 55.000 15.72 0.00 0.00 3.32
3026 5854 0.107654 ATTGGTTGGAGTCGGCTAGC 60.108 55.000 6.04 6.04 0.00 3.42
3027 5855 1.207089 TGATTGGTTGGAGTCGGCTAG 59.793 52.381 0.00 0.00 0.00 3.42
3028 5856 1.271856 TGATTGGTTGGAGTCGGCTA 58.728 50.000 0.00 0.00 0.00 3.93
3029 5857 0.400213 TTGATTGGTTGGAGTCGGCT 59.600 50.000 0.00 0.00 0.00 5.52
3030 5858 1.068541 GTTTGATTGGTTGGAGTCGGC 60.069 52.381 0.00 0.00 0.00 5.54
3031 5859 2.504367 AGTTTGATTGGTTGGAGTCGG 58.496 47.619 0.00 0.00 0.00 4.79
3032 5860 4.154195 CCTTAGTTTGATTGGTTGGAGTCG 59.846 45.833 0.00 0.00 0.00 4.18
3033 5861 4.082733 GCCTTAGTTTGATTGGTTGGAGTC 60.083 45.833 0.00 0.00 0.00 3.36
3034 5862 3.826729 GCCTTAGTTTGATTGGTTGGAGT 59.173 43.478 0.00 0.00 0.00 3.85
3035 5863 4.082125 AGCCTTAGTTTGATTGGTTGGAG 58.918 43.478 0.00 0.00 0.00 3.86
3036 5864 4.112634 AGCCTTAGTTTGATTGGTTGGA 57.887 40.909 0.00 0.00 0.00 3.53
3037 5865 5.010282 AGTAGCCTTAGTTTGATTGGTTGG 58.990 41.667 0.00 0.00 0.00 3.77
3038 5866 5.940470 AGAGTAGCCTTAGTTTGATTGGTTG 59.060 40.000 0.00 0.00 0.00 3.77
3039 5867 6.128138 AGAGTAGCCTTAGTTTGATTGGTT 57.872 37.500 0.00 0.00 0.00 3.67
3040 5868 5.763876 AGAGTAGCCTTAGTTTGATTGGT 57.236 39.130 0.00 0.00 0.00 3.67
3041 5869 6.258947 GCTAAGAGTAGCCTTAGTTTGATTGG 59.741 42.308 11.02 0.00 46.10 3.16
3042 5870 7.240414 GCTAAGAGTAGCCTTAGTTTGATTG 57.760 40.000 11.02 0.00 46.10 2.67
3056 5884 2.099427 GGTTGGAGTCGGCTAAGAGTAG 59.901 54.545 0.00 0.00 0.00 2.57
3057 5885 2.097825 GGTTGGAGTCGGCTAAGAGTA 58.902 52.381 0.00 0.00 0.00 2.59
3058 5886 0.896226 GGTTGGAGTCGGCTAAGAGT 59.104 55.000 0.00 0.00 0.00 3.24
3059 5887 0.895530 TGGTTGGAGTCGGCTAAGAG 59.104 55.000 0.00 0.00 0.00 2.85
3060 5888 1.344065 TTGGTTGGAGTCGGCTAAGA 58.656 50.000 0.00 0.00 0.00 2.10
3061 5889 2.280628 GATTGGTTGGAGTCGGCTAAG 58.719 52.381 0.00 0.00 0.00 2.18
3062 5890 1.626321 TGATTGGTTGGAGTCGGCTAA 59.374 47.619 0.00 0.00 0.00 3.09
3185 6013 1.000274 GCCGTTGCAATTCAAGAACCT 60.000 47.619 0.59 0.00 34.91 3.50
3217 6045 0.250338 GGAAGCAGAGAAACACCCGT 60.250 55.000 0.00 0.00 0.00 5.28
3222 6050 2.575532 CCTTGTGGAAGCAGAGAAACA 58.424 47.619 0.00 0.00 34.57 2.83
3247 6075 7.576861 TGATACTCTGGTAATTATCACGACA 57.423 36.000 0.00 0.00 0.00 4.35
3446 6275 1.651240 CCTTGCTTCACATGCCTCCG 61.651 60.000 0.00 0.00 0.00 4.63
3455 6284 0.890996 CACCCCTCACCTTGCTTCAC 60.891 60.000 0.00 0.00 0.00 3.18
3466 6295 1.547675 GGATTGCAAGAACACCCCTCA 60.548 52.381 4.94 0.00 0.00 3.86
3497 6326 1.051812 CTATGGACCTTGGATCGCCT 58.948 55.000 0.00 0.00 34.31 5.52
3506 6335 1.676014 GCAACTGCGACTATGGACCTT 60.676 52.381 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.