Multiple sequence alignment - TraesCS4D01G142500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G142500 chr4D 100.000 3940 0 0 1 3940 128168952 128165013 0.000000e+00 7276.0
1 TraesCS4D01G142500 chr4D 80.392 102 15 3 2053 2152 47535109 47535011 5.460000e-09 73.1
2 TraesCS4D01G142500 chr4B 96.313 3173 90 18 1 3157 192060337 192057176 0.000000e+00 5186.0
3 TraesCS4D01G142500 chr4B 94.970 338 17 0 3603 3940 192056868 192056531 7.500000e-147 531.0
4 TraesCS4D01G142500 chr4B 93.609 266 12 3 3289 3549 192057128 192056863 3.690000e-105 392.0
5 TraesCS4D01G142500 chr4B 89.286 56 6 0 2097 2152 69379581 69379636 1.960000e-08 71.3
6 TraesCS4D01G142500 chr4A 95.592 3176 94 16 1 3157 440180190 440183338 0.000000e+00 5048.0
7 TraesCS4D01G142500 chr4A 89.272 261 18 3 3289 3539 440183382 440183642 6.350000e-83 318.0
8 TraesCS4D01G142500 chr4A 88.235 255 17 4 3675 3929 440187337 440187578 3.850000e-75 292.0
9 TraesCS4D01G142500 chr4A 81.373 102 14 3 2053 2152 550481906 550481808 1.170000e-10 78.7
10 TraesCS4D01G142500 chr7D 85.950 605 63 9 801 1398 442793167 442793756 9.290000e-176 627.0
11 TraesCS4D01G142500 chr7D 92.063 126 8 2 3153 3278 174803146 174803269 4.050000e-40 176.0
12 TraesCS4D01G142500 chr7D 88.356 146 11 5 3127 3266 2337831 2337976 1.880000e-38 171.0
13 TraesCS4D01G142500 chr7D 100.000 34 0 0 3905 3938 149092185 149092152 3.290000e-06 63.9
14 TraesCS4D01G142500 chr6D 78.726 879 147 32 819 1681 317854420 317853566 5.750000e-153 551.0
15 TraesCS4D01G142500 chr6A 78.719 874 150 30 819 1681 455316702 455315854 5.750000e-153 551.0
16 TraesCS4D01G142500 chr6A 80.913 241 46 0 1967 2207 455315545 455315305 1.450000e-44 191.0
17 TraesCS4D01G142500 chr7B 86.166 506 65 4 896 1398 460559364 460559867 3.460000e-150 542.0
18 TraesCS4D01G142500 chr6B 78.320 881 153 31 816 1681 506546270 506547127 5.800000e-148 534.0
19 TraesCS4D01G142500 chr6B 79.151 259 54 0 1949 2207 506547413 506547671 3.130000e-41 180.0
20 TraesCS4D01G142500 chr2D 98.230 113 2 0 3152 3264 14895101 14895213 8.640000e-47 198.0
21 TraesCS4D01G142500 chr5B 96.460 113 4 0 3153 3265 531200072 531199960 1.870000e-43 187.0
22 TraesCS4D01G142500 chr5B 96.429 112 4 0 3152 3263 524744670 524744781 6.720000e-43 185.0
23 TraesCS4D01G142500 chr5B 92.742 124 8 1 3148 3271 591553947 591554069 1.130000e-40 178.0
24 TraesCS4D01G142500 chr5B 92.063 126 8 2 3156 3281 394273071 394272948 4.050000e-40 176.0
25 TraesCS4D01G142500 chr5B 97.368 38 1 0 3901 3938 551461233 551461196 9.140000e-07 65.8
26 TraesCS4D01G142500 chr3D 94.118 119 7 0 3146 3264 168186553 168186435 8.700000e-42 182.0
27 TraesCS4D01G142500 chr3D 94.286 35 2 0 3547 3581 26289501 26289535 2.000000e-03 54.7
28 TraesCS4D01G142500 chr5D 93.388 121 8 0 3146 3266 57849807 57849927 3.130000e-41 180.0
29 TraesCS4D01G142500 chr5D 97.368 38 1 0 3901 3938 451626090 451626053 9.140000e-07 65.8
30 TraesCS4D01G142500 chr2A 93.103 87 5 1 3408 3493 698276915 698276829 4.130000e-25 126.0
31 TraesCS4D01G142500 chr3A 91.667 60 5 0 3434 3493 594620534 594620475 2.520000e-12 84.2
32 TraesCS4D01G142500 chr2B 95.238 42 2 0 3898 3939 109057346 109057387 2.540000e-07 67.6
33 TraesCS4D01G142500 chr2B 95.238 42 2 0 3898 3939 109127398 109127439 2.540000e-07 67.6
34 TraesCS4D01G142500 chr2B 94.286 35 2 0 3547 3581 668025668 668025702 2.000000e-03 54.7
35 TraesCS4D01G142500 chrUn 97.368 38 1 0 3901 3938 96292235 96292198 9.140000e-07 65.8
36 TraesCS4D01G142500 chr7A 97.368 38 1 0 3901 3938 471550006 471549969 9.140000e-07 65.8
37 TraesCS4D01G142500 chr7A 100.000 28 0 0 3584 3611 53917109 53917136 7.000000e-03 52.8
38 TraesCS4D01G142500 chr5A 100.000 28 0 0 3547 3574 18904163 18904136 7.000000e-03 52.8
39 TraesCS4D01G142500 chr5A 96.774 31 1 0 3544 3574 566134642 566134672 7.000000e-03 52.8
40 TraesCS4D01G142500 chr1D 100.000 28 0 0 3547 3574 208240342 208240369 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G142500 chr4D 128165013 128168952 3939 True 7276.000000 7276 100.0000 1 3940 1 chr4D.!!$R2 3939
1 TraesCS4D01G142500 chr4B 192056531 192060337 3806 True 2036.333333 5186 94.9640 1 3940 3 chr4B.!!$R1 3939
2 TraesCS4D01G142500 chr4A 440180190 440187578 7388 False 1886.000000 5048 91.0330 1 3929 3 chr4A.!!$F1 3928
3 TraesCS4D01G142500 chr7D 442793167 442793756 589 False 627.000000 627 85.9500 801 1398 1 chr7D.!!$F3 597
4 TraesCS4D01G142500 chr6D 317853566 317854420 854 True 551.000000 551 78.7260 819 1681 1 chr6D.!!$R1 862
5 TraesCS4D01G142500 chr6A 455315305 455316702 1397 True 371.000000 551 79.8160 819 2207 2 chr6A.!!$R1 1388
6 TraesCS4D01G142500 chr7B 460559364 460559867 503 False 542.000000 542 86.1660 896 1398 1 chr7B.!!$F1 502
7 TraesCS4D01G142500 chr6B 506546270 506547671 1401 False 357.000000 534 78.7355 816 2207 2 chr6B.!!$F1 1391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 679 0.977395 CCTCCTTCAACGAGTCCCTT 59.023 55.0 0.00 0.00 0.00 3.95 F
2378 2495 0.678684 TGACGTCCATGGAGCTACGA 60.679 55.0 25.39 5.97 38.64 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2436 2553 0.107410 TGGCCGAACCGATAAAGCAT 60.107 50.0 0.0 0.0 43.94 3.79 R
3250 3376 0.111832 TCGCCATATACTCCCTCCGT 59.888 55.0 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 162 2.882761 CACATCCCACCATCATCATCAC 59.117 50.000 0.00 0.00 0.00 3.06
170 175 2.054687 TCATCACCAACACGTACGTC 57.945 50.000 19.94 0.00 0.00 4.34
575 583 1.068417 CACCAAGTTCGACGACCCA 59.932 57.895 0.00 0.00 0.00 4.51
671 679 0.977395 CCTCCTTCAACGAGTCCCTT 59.023 55.000 0.00 0.00 0.00 3.95
717 735 2.843352 TTACGTGTCGTCGGTGCCA 61.843 57.895 0.00 0.00 41.54 4.92
718 736 3.541093 TACGTGTCGTCGGTGCCAC 62.541 63.158 0.00 0.00 41.54 5.01
720 738 4.936823 GTGTCGTCGGTGCCACGT 62.937 66.667 10.99 0.00 38.45 4.49
742 773 7.167635 CACGTACGTCTGCTCTTTTTCATATAT 59.832 37.037 19.94 0.00 0.00 0.86
784 815 2.070783 GGTGGCATGCAATTTGTCTTG 58.929 47.619 21.36 1.41 0.00 3.02
785 816 2.070783 GTGGCATGCAATTTGTCTTGG 58.929 47.619 21.36 0.00 0.00 3.61
786 817 1.081094 GGCATGCAATTTGTCTTGGC 58.919 50.000 21.36 13.07 0.00 4.52
787 818 1.608542 GGCATGCAATTTGTCTTGGCA 60.609 47.619 21.36 0.00 34.53 4.92
788 819 2.352388 GCATGCAATTTGTCTTGGCAT 58.648 42.857 14.21 0.00 0.00 4.40
1050 1104 1.227263 CAAGCACTACGCCGCCTAT 60.227 57.895 0.00 0.00 44.04 2.57
1137 1193 3.706373 GAGACCTTCCAGCGCCCA 61.706 66.667 2.29 0.00 0.00 5.36
1149 1205 1.815421 GCGCCCATTCGAGATGTGT 60.815 57.895 0.00 0.00 0.00 3.72
1428 1485 2.124151 GGCAAGCCCGTCATGGAT 60.124 61.111 0.00 0.00 42.00 3.41
1682 1739 0.774908 CCCCTTGACCCCAACAAGTA 59.225 55.000 0.00 0.00 41.88 2.24
1935 2050 1.431440 GCACCACGCAAACTTGACA 59.569 52.632 0.00 0.00 41.79 3.58
2210 2325 4.441634 CGGAAGATACAGTCCAGGTAAAGG 60.442 50.000 0.00 0.00 33.10 3.11
2266 2383 5.808042 ATGGATTCTGATTTTCTGACACG 57.192 39.130 0.00 0.00 0.00 4.49
2277 2394 2.354188 TGACACGTCGCTGGAACG 60.354 61.111 0.00 0.00 0.00 3.95
2293 2410 4.323417 TGGAACGTTCTGATGTAATTGCT 58.677 39.130 26.32 0.00 0.00 3.91
2378 2495 0.678684 TGACGTCCATGGAGCTACGA 60.679 55.000 25.39 5.97 38.64 3.43
2436 2553 2.274645 TTTTACGACGGGCCGGAGA 61.275 57.895 31.78 9.58 0.00 3.71
2618 2735 3.123620 GCGAGCCACTCCTGCAAG 61.124 66.667 0.00 0.00 0.00 4.01
2809 2926 2.031163 GCTCAAGGTGTGCGAGGT 59.969 61.111 0.00 0.00 0.00 3.85
2972 3089 0.574922 GGTTCTTTTGCGGCGTTTTG 59.425 50.000 9.37 0.00 0.00 2.44
2992 3112 5.699097 TTGGGACGGTTTCATTCTTTTAG 57.301 39.130 0.00 0.00 0.00 1.85
3001 3121 8.565416 ACGGTTTCATTCTTTTAGTTTTCCTAG 58.435 33.333 0.00 0.00 0.00 3.02
3003 3123 9.074576 GGTTTCATTCTTTTAGTTTTCCTAGGA 57.925 33.333 7.62 7.62 0.00 2.94
3005 3125 9.862149 TTTCATTCTTTTAGTTTTCCTAGGAGT 57.138 29.630 12.26 1.03 0.00 3.85
3080 3205 0.834612 AGTGTCAAAGGGAACGTCCA 59.165 50.000 0.00 0.00 38.64 4.02
3126 3252 5.864418 AGATGGTTGAATCAAATGATGGG 57.136 39.130 0.00 0.00 34.49 4.00
3135 3261 9.868277 GTTGAATCAAATGATGGGTTAATACAA 57.132 29.630 0.00 0.00 34.49 2.41
3157 3283 8.168681 ACAACAAATTTTGCGTTGCTATATAC 57.831 30.769 15.90 0.00 42.98 1.47
3158 3284 8.026607 ACAACAAATTTTGCGTTGCTATATACT 58.973 29.630 15.90 0.00 42.98 2.12
3159 3285 8.523464 CAACAAATTTTGCGTTGCTATATACTC 58.477 33.333 9.04 0.00 34.21 2.59
3160 3286 7.193595 ACAAATTTTGCGTTGCTATATACTCC 58.806 34.615 9.04 0.00 0.00 3.85
3161 3287 5.941948 ATTTTGCGTTGCTATATACTCCC 57.058 39.130 0.00 0.00 0.00 4.30
3162 3288 4.682778 TTTGCGTTGCTATATACTCCCT 57.317 40.909 0.00 0.00 0.00 4.20
3163 3289 3.936372 TGCGTTGCTATATACTCCCTC 57.064 47.619 0.00 0.00 0.00 4.30
3164 3290 2.561419 TGCGTTGCTATATACTCCCTCC 59.439 50.000 0.00 0.00 0.00 4.30
3165 3291 2.415625 GCGTTGCTATATACTCCCTCCG 60.416 54.545 0.00 0.00 0.00 4.63
3166 3292 2.818432 CGTTGCTATATACTCCCTCCGT 59.182 50.000 0.00 0.00 0.00 4.69
3167 3293 3.255149 CGTTGCTATATACTCCCTCCGTT 59.745 47.826 0.00 0.00 0.00 4.44
3168 3294 4.615452 CGTTGCTATATACTCCCTCCGTTC 60.615 50.000 0.00 0.00 0.00 3.95
3169 3295 3.079578 TGCTATATACTCCCTCCGTTCG 58.920 50.000 0.00 0.00 0.00 3.95
3170 3296 2.422832 GCTATATACTCCCTCCGTTCGG 59.577 54.545 4.74 4.74 0.00 4.30
3171 3297 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
3172 3298 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
3173 3299 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
3174 3300 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3175 3301 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3176 3302 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3177 3303 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3178 3304 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3179 3305 3.364549 TCCCTCCGTTCGGAATTACTTA 58.635 45.455 14.79 0.00 33.41 2.24
3180 3306 3.962718 TCCCTCCGTTCGGAATTACTTAT 59.037 43.478 14.79 0.00 33.41 1.73
3181 3307 4.038402 TCCCTCCGTTCGGAATTACTTATC 59.962 45.833 14.79 0.00 33.41 1.75
3182 3308 3.979495 CCTCCGTTCGGAATTACTTATCG 59.021 47.826 14.79 0.00 33.41 2.92
3183 3309 4.498682 CCTCCGTTCGGAATTACTTATCGT 60.499 45.833 14.79 0.00 33.41 3.73
3184 3310 4.353737 TCCGTTCGGAATTACTTATCGTG 58.646 43.478 11.66 0.00 0.00 4.35
3185 3311 3.488310 CCGTTCGGAATTACTTATCGTGG 59.512 47.826 5.19 0.00 0.00 4.94
3186 3312 4.353737 CGTTCGGAATTACTTATCGTGGA 58.646 43.478 0.00 0.00 0.00 4.02
3187 3313 4.799949 CGTTCGGAATTACTTATCGTGGAA 59.200 41.667 0.00 0.00 0.00 3.53
3188 3314 5.289193 CGTTCGGAATTACTTATCGTGGAAA 59.711 40.000 0.00 0.00 0.00 3.13
3189 3315 6.019318 CGTTCGGAATTACTTATCGTGGAAAT 60.019 38.462 0.00 0.00 0.00 2.17
3190 3316 6.838198 TCGGAATTACTTATCGTGGAAATG 57.162 37.500 0.00 0.00 0.00 2.32
3191 3317 5.756347 TCGGAATTACTTATCGTGGAAATGG 59.244 40.000 0.00 0.00 0.00 3.16
3192 3318 5.756347 CGGAATTACTTATCGTGGAAATGGA 59.244 40.000 0.00 0.00 0.00 3.41
3193 3319 6.426937 CGGAATTACTTATCGTGGAAATGGAT 59.573 38.462 0.00 0.00 0.00 3.41
3194 3320 7.571244 CGGAATTACTTATCGTGGAAATGGATG 60.571 40.741 0.00 0.00 0.00 3.51
3195 3321 7.228706 GGAATTACTTATCGTGGAAATGGATGT 59.771 37.037 0.00 0.00 0.00 3.06
3196 3322 9.268268 GAATTACTTATCGTGGAAATGGATGTA 57.732 33.333 0.00 0.00 0.00 2.29
3197 3323 9.793259 AATTACTTATCGTGGAAATGGATGTAT 57.207 29.630 0.00 0.00 0.00 2.29
3198 3324 8.827177 TTACTTATCGTGGAAATGGATGTATC 57.173 34.615 0.00 0.00 0.00 2.24
3199 3325 7.067496 ACTTATCGTGGAAATGGATGTATCT 57.933 36.000 0.00 0.00 0.00 1.98
3200 3326 8.190326 ACTTATCGTGGAAATGGATGTATCTA 57.810 34.615 0.00 0.00 0.00 1.98
3201 3327 8.307483 ACTTATCGTGGAAATGGATGTATCTAG 58.693 37.037 0.00 0.00 0.00 2.43
3202 3328 6.918067 ATCGTGGAAATGGATGTATCTAGA 57.082 37.500 0.00 0.00 0.00 2.43
3203 3329 6.085555 TCGTGGAAATGGATGTATCTAGAC 57.914 41.667 0.00 0.00 0.00 2.59
3204 3330 4.917998 CGTGGAAATGGATGTATCTAGACG 59.082 45.833 0.00 0.00 0.00 4.18
3205 3331 5.507482 CGTGGAAATGGATGTATCTAGACGT 60.507 44.000 0.00 0.00 0.00 4.34
3206 3332 6.293790 CGTGGAAATGGATGTATCTAGACGTA 60.294 42.308 0.00 0.00 0.00 3.57
3207 3333 7.575155 CGTGGAAATGGATGTATCTAGACGTAT 60.575 40.741 0.00 0.00 0.00 3.06
3208 3334 8.088981 GTGGAAATGGATGTATCTAGACGTATT 58.911 37.037 0.00 0.00 0.00 1.89
3209 3335 8.647796 TGGAAATGGATGTATCTAGACGTATTT 58.352 33.333 0.00 0.00 0.00 1.40
3210 3336 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
3237 3363 9.606631 AGTTCTAGATACATCCATTTTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
3238 3364 9.383519 GTTCTAGATACATCCATTTTCAAGACA 57.616 33.333 0.00 0.00 0.00 3.41
3239 3365 9.958180 TTCTAGATACATCCATTTTCAAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
3240 3366 9.605275 TCTAGATACATCCATTTTCAAGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
3241 3367 9.388506 CTAGATACATCCATTTTCAAGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
3243 3369 9.739276 AGATACATCCATTTTCAAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
3247 3373 8.306761 ACATCCATTTTCAAGACAAGTAATTCC 58.693 33.333 0.00 0.00 0.00 3.01
3248 3374 6.908825 TCCATTTTCAAGACAAGTAATTCCG 58.091 36.000 0.00 0.00 0.00 4.30
3249 3375 6.712998 TCCATTTTCAAGACAAGTAATTCCGA 59.287 34.615 0.00 0.00 0.00 4.55
3250 3376 7.229707 TCCATTTTCAAGACAAGTAATTCCGAA 59.770 33.333 0.00 0.00 0.00 4.30
3251 3377 7.326063 CCATTTTCAAGACAAGTAATTCCGAAC 59.674 37.037 0.00 0.00 0.00 3.95
3252 3378 5.585500 TTCAAGACAAGTAATTCCGAACG 57.415 39.130 0.00 0.00 0.00 3.95
3253 3379 3.991773 TCAAGACAAGTAATTCCGAACGG 59.008 43.478 6.94 6.94 0.00 4.44
3254 3380 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
3255 3381 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3256 3382 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3257 3383 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3258 3384 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3259 3385 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3268 3394 0.966920 AACGGAGGGAGTATATGGCG 59.033 55.000 0.00 0.00 0.00 5.69
3284 3410 6.949352 ATATGGCGAAAAATCATTGACTCT 57.051 33.333 0.00 0.00 0.00 3.24
3292 3418 4.425577 AAATCATTGACTCTGCGTTTCC 57.574 40.909 0.00 0.00 0.00 3.13
3375 3524 6.152154 AGAGTCTACTTTTAGTTCCTCAGCTC 59.848 42.308 0.00 0.00 0.00 4.09
3384 3533 1.268079 GTTCCTCAGCTCTTTTGTGCC 59.732 52.381 0.00 0.00 39.53 5.01
3553 3708 7.098074 TCTTTCTCTAAAGATTACTCCGTCC 57.902 40.000 0.00 0.00 44.85 4.79
3554 3709 6.890814 TCTTTCTCTAAAGATTACTCCGTCCT 59.109 38.462 0.00 0.00 44.85 3.85
3555 3710 8.051535 TCTTTCTCTAAAGATTACTCCGTCCTA 58.948 37.037 0.00 0.00 44.85 2.94
3556 3711 8.763984 TTTCTCTAAAGATTACTCCGTCCTAT 57.236 34.615 0.00 0.00 0.00 2.57
3557 3712 9.857656 TTTCTCTAAAGATTACTCCGTCCTATA 57.142 33.333 0.00 0.00 0.00 1.31
3558 3713 9.857656 TTCTCTAAAGATTACTCCGTCCTATAA 57.142 33.333 0.00 0.00 0.00 0.98
3568 3723 9.798994 ATTACTCCGTCCTATAATATAAAAGCG 57.201 33.333 0.00 0.00 0.00 4.68
3569 3724 7.224522 ACTCCGTCCTATAATATAAAAGCGT 57.775 36.000 0.00 0.00 0.00 5.07
3570 3725 7.664758 ACTCCGTCCTATAATATAAAAGCGTT 58.335 34.615 0.00 0.00 0.00 4.84
3571 3726 8.146412 ACTCCGTCCTATAATATAAAAGCGTTT 58.854 33.333 2.53 2.53 0.00 3.60
3572 3727 8.891671 TCCGTCCTATAATATAAAAGCGTTTT 57.108 30.769 2.19 1.29 36.67 2.43
3573 3728 9.328845 TCCGTCCTATAATATAAAAGCGTTTTT 57.671 29.630 14.50 14.50 39.69 1.94
3574 3729 9.377383 CCGTCCTATAATATAAAAGCGTTTTTG 57.623 33.333 18.77 0.95 37.12 2.44
3575 3730 9.377383 CGTCCTATAATATAAAAGCGTTTTTGG 57.623 33.333 18.77 9.46 37.12 3.28
3576 3731 9.177304 GTCCTATAATATAAAAGCGTTTTTGGC 57.823 33.333 18.77 0.00 37.12 4.52
3577 3732 8.904834 TCCTATAATATAAAAGCGTTTTTGGCA 58.095 29.630 18.77 5.33 37.12 4.92
3578 3733 8.964150 CCTATAATATAAAAGCGTTTTTGGCAC 58.036 33.333 18.77 0.00 37.12 5.01
3579 3734 9.730420 CTATAATATAAAAGCGTTTTTGGCACT 57.270 29.630 18.77 3.85 37.12 4.40
3582 3737 8.628882 AATATAAAAGCGTTTTTGGCACTATC 57.371 30.769 18.77 0.00 37.12 2.08
3583 3738 3.297830 AAAGCGTTTTTGGCACTATCC 57.702 42.857 0.00 0.00 0.00 2.59
3584 3739 1.904287 AGCGTTTTTGGCACTATCCA 58.096 45.000 0.00 0.00 0.00 3.41
3585 3740 2.446435 AGCGTTTTTGGCACTATCCAT 58.554 42.857 0.00 0.00 35.77 3.41
3586 3741 3.616219 AGCGTTTTTGGCACTATCCATA 58.384 40.909 0.00 0.00 35.77 2.74
3587 3742 4.013728 AGCGTTTTTGGCACTATCCATAA 58.986 39.130 0.00 0.00 35.77 1.90
3588 3743 4.644685 AGCGTTTTTGGCACTATCCATAAT 59.355 37.500 0.00 0.00 35.77 1.28
3589 3744 5.825679 AGCGTTTTTGGCACTATCCATAATA 59.174 36.000 0.00 0.00 35.77 0.98
3590 3745 6.490040 AGCGTTTTTGGCACTATCCATAATAT 59.510 34.615 0.00 0.00 35.77 1.28
3591 3746 7.663905 AGCGTTTTTGGCACTATCCATAATATA 59.336 33.333 0.00 0.00 35.77 0.86
3592 3747 8.293867 GCGTTTTTGGCACTATCCATAATATAA 58.706 33.333 0.00 0.00 35.77 0.98
3597 3752 7.609760 TGGCACTATCCATAATATAAAAGCG 57.390 36.000 0.00 0.00 0.00 4.68
3598 3753 6.093495 TGGCACTATCCATAATATAAAAGCGC 59.907 38.462 0.00 0.00 0.00 5.92
3599 3754 6.316390 GGCACTATCCATAATATAAAAGCGCT 59.684 38.462 2.64 2.64 0.00 5.92
3600 3755 7.148239 GGCACTATCCATAATATAAAAGCGCTT 60.148 37.037 18.98 18.98 0.00 4.68
3601 3756 8.237267 GCACTATCCATAATATAAAAGCGCTTT 58.763 33.333 29.11 29.11 0.00 3.51
3633 3788 0.465460 TTTGTGCTCTTTGGGTCGCT 60.465 50.000 0.00 0.00 0.00 4.93
3640 3795 2.870435 GCTCTTTGGGTCGCTACTTTCA 60.870 50.000 0.00 0.00 0.00 2.69
3715 7503 5.867330 TGGGTAGTCGGTTTAAAAGATCAA 58.133 37.500 0.00 0.00 0.00 2.57
3819 7607 9.621629 TTTTCTAAATTGAATAGCCTAATCGGA 57.378 29.630 0.00 0.00 33.16 4.55
3840 7628 9.603921 ATCGGAAAAATATTGCAAATTCAGAAT 57.396 25.926 1.71 0.00 0.00 2.40
3868 7656 1.171308 TGTCTGTAGTGGAGCCGTAC 58.829 55.000 0.00 0.00 0.00 3.67
3878 7666 1.026718 GGAGCCGTACAATGCTTGCT 61.027 55.000 3.39 0.00 38.11 3.91
3880 7668 2.213499 GAGCCGTACAATGCTTGCTAT 58.787 47.619 3.39 0.00 38.11 2.97
3917 7705 7.466590 GCTCCATTAGAGATGCTTTGTACTTTC 60.467 40.741 0.00 0.00 46.50 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.599624 TGCATGGATAGATAGATAACTCATCA 57.400 34.615 0.00 0.00 35.96 3.07
129 130 2.125106 GGTGGGATGTGGAGCGTC 60.125 66.667 0.00 0.00 0.00 5.19
170 175 1.705337 CCATTGTAGGTTGGCTCGCG 61.705 60.000 0.00 0.00 0.00 5.87
263 271 3.519930 GAGGGGACGGCTCGAGAC 61.520 72.222 18.75 13.93 0.00 3.36
575 583 2.112297 TGGAGGCGCGGTTTCTTT 59.888 55.556 8.83 0.00 0.00 2.52
717 735 3.088194 TGAAAAAGAGCAGACGTACGT 57.912 42.857 23.04 23.04 0.00 3.57
718 736 5.950965 ATATGAAAAAGAGCAGACGTACG 57.049 39.130 15.01 15.01 0.00 3.67
719 737 9.680315 ACTATATATGAAAAAGAGCAGACGTAC 57.320 33.333 0.00 0.00 0.00 3.67
720 738 9.678941 CACTATATATGAAAAAGAGCAGACGTA 57.321 33.333 0.00 0.00 0.00 3.57
742 773 4.234574 CAGATCTGTTGTTACACGCACTA 58.765 43.478 14.95 0.00 0.00 2.74
784 815 2.976903 GAGATCGCCTGCCATGCC 60.977 66.667 0.00 0.00 0.00 4.40
785 816 3.344215 CGAGATCGCCTGCCATGC 61.344 66.667 0.00 0.00 0.00 4.06
786 817 1.953138 GTCGAGATCGCCTGCCATG 60.953 63.158 0.00 0.00 39.60 3.66
787 818 2.419198 GTCGAGATCGCCTGCCAT 59.581 61.111 0.00 0.00 39.60 4.40
788 819 4.193334 CGTCGAGATCGCCTGCCA 62.193 66.667 0.00 0.00 39.60 4.92
1050 1104 1.844771 CGTACCAGTCGTCCACGTCA 61.845 60.000 0.00 0.00 40.80 4.35
1137 1193 0.460284 GGCGGACACACATCTCGAAT 60.460 55.000 0.00 0.00 0.00 3.34
1713 1770 0.324614 TGATCTTTTCAGGCGCCTCA 59.675 50.000 30.29 13.03 0.00 3.86
1935 2050 6.866480 CATGTTTATGCCACCAAAGTAGATT 58.134 36.000 0.00 0.00 0.00 2.40
2210 2325 9.387123 GATCGGAATAATAAACTTTGCATCTTC 57.613 33.333 0.00 0.00 0.00 2.87
2266 2383 0.716108 CATCAGAACGTTCCAGCGAC 59.284 55.000 24.22 0.00 35.59 5.19
2277 2394 6.349973 TCGATCAAGCAATTACATCAGAAC 57.650 37.500 0.00 0.00 0.00 3.01
2293 2410 1.667154 CCGTCCTCCTGCTCGATCAA 61.667 60.000 0.00 0.00 0.00 2.57
2396 2513 2.170012 TGTATGTCCTCCCAGGGTAC 57.830 55.000 5.01 3.41 35.59 3.34
2402 2519 4.283978 TCGTAAAACTTGTATGTCCTCCCA 59.716 41.667 0.00 0.00 0.00 4.37
2436 2553 0.107410 TGGCCGAACCGATAAAGCAT 60.107 50.000 0.00 0.00 43.94 3.79
2618 2735 0.666577 CGTTGAAGTCCACGGTCTCC 60.667 60.000 0.00 0.00 0.00 3.71
2678 2795 1.831389 GCACAGTGTACACCAGCACG 61.831 60.000 22.28 8.86 40.26 5.34
2809 2926 1.071542 TCTTCTCCACGATGCCAAACA 59.928 47.619 0.00 0.00 0.00 2.83
2906 3023 3.003480 GTTGATCTTGACGGGGAAAGAG 58.997 50.000 0.00 0.00 35.95 2.85
2972 3089 5.700722 AACTAAAAGAATGAAACCGTCCC 57.299 39.130 0.00 0.00 0.00 4.46
3126 3252 7.341446 AGCAACGCAAAATTTGTTGTATTAAC 58.659 30.769 16.68 4.36 43.66 2.01
3135 3261 7.193595 GGAGTATATAGCAACGCAAAATTTGT 58.806 34.615 7.60 0.00 0.00 2.83
3157 3283 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3158 3284 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3159 3285 2.685850 AAGTAATTCCGAACGGAGGG 57.314 50.000 15.34 0.00 46.06 4.30
3160 3286 3.979495 CGATAAGTAATTCCGAACGGAGG 59.021 47.826 15.34 0.00 46.06 4.30
3161 3287 4.440103 CACGATAAGTAATTCCGAACGGAG 59.560 45.833 15.34 3.62 46.06 4.63
3162 3288 4.353737 CACGATAAGTAATTCCGAACGGA 58.646 43.478 12.04 12.04 43.52 4.69
3163 3289 3.488310 CCACGATAAGTAATTCCGAACGG 59.512 47.826 6.94 6.94 0.00 4.44
3164 3290 4.353737 TCCACGATAAGTAATTCCGAACG 58.646 43.478 4.96 0.00 0.00 3.95
3165 3291 6.651755 TTTCCACGATAAGTAATTCCGAAC 57.348 37.500 4.96 0.00 0.00 3.95
3166 3292 6.259167 CCATTTCCACGATAAGTAATTCCGAA 59.741 38.462 4.96 0.00 0.00 4.30
3167 3293 5.756347 CCATTTCCACGATAAGTAATTCCGA 59.244 40.000 4.96 0.00 0.00 4.55
3168 3294 5.756347 TCCATTTCCACGATAAGTAATTCCG 59.244 40.000 0.00 0.00 0.00 4.30
3169 3295 7.228706 ACATCCATTTCCACGATAAGTAATTCC 59.771 37.037 0.00 0.00 0.00 3.01
3170 3296 8.154649 ACATCCATTTCCACGATAAGTAATTC 57.845 34.615 0.00 0.00 0.00 2.17
3171 3297 9.793259 ATACATCCATTTCCACGATAAGTAATT 57.207 29.630 0.00 0.00 0.00 1.40
3172 3298 9.436957 GATACATCCATTTCCACGATAAGTAAT 57.563 33.333 0.00 0.00 0.00 1.89
3173 3299 8.647796 AGATACATCCATTTCCACGATAAGTAA 58.352 33.333 0.00 0.00 0.00 2.24
3174 3300 8.190326 AGATACATCCATTTCCACGATAAGTA 57.810 34.615 0.00 0.00 0.00 2.24
3175 3301 7.067496 AGATACATCCATTTCCACGATAAGT 57.933 36.000 0.00 0.00 0.00 2.24
3176 3302 8.523658 TCTAGATACATCCATTTCCACGATAAG 58.476 37.037 0.00 0.00 0.00 1.73
3177 3303 8.304596 GTCTAGATACATCCATTTCCACGATAA 58.695 37.037 0.00 0.00 0.00 1.75
3178 3304 7.361799 CGTCTAGATACATCCATTTCCACGATA 60.362 40.741 0.00 0.00 0.00 2.92
3179 3305 6.570571 CGTCTAGATACATCCATTTCCACGAT 60.571 42.308 0.00 0.00 0.00 3.73
3180 3306 5.278315 CGTCTAGATACATCCATTTCCACGA 60.278 44.000 0.00 0.00 0.00 4.35
3181 3307 4.917998 CGTCTAGATACATCCATTTCCACG 59.082 45.833 0.00 0.00 0.00 4.94
3182 3308 5.844004 ACGTCTAGATACATCCATTTCCAC 58.156 41.667 0.00 0.00 0.00 4.02
3183 3309 7.776618 ATACGTCTAGATACATCCATTTCCA 57.223 36.000 0.00 0.00 0.00 3.53
3184 3310 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
3211 3337 9.606631 GTCTTGAAAATGGATGTATCTAGAACT 57.393 33.333 0.00 0.00 0.00 3.01
3212 3338 9.383519 TGTCTTGAAAATGGATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
3213 3339 9.958180 TTGTCTTGAAAATGGATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
3214 3340 9.605275 CTTGTCTTGAAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
3215 3341 9.388506 ACTTGTCTTGAAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
3217 3343 9.739276 TTACTTGTCTTGAAAATGGATGTATCT 57.261 29.630 0.00 0.00 0.00 1.98
3221 3347 8.306761 GGAATTACTTGTCTTGAAAATGGATGT 58.693 33.333 0.00 0.00 0.00 3.06
3222 3348 7.485913 CGGAATTACTTGTCTTGAAAATGGATG 59.514 37.037 0.00 0.00 0.00 3.51
3223 3349 7.393234 TCGGAATTACTTGTCTTGAAAATGGAT 59.607 33.333 0.00 0.00 0.00 3.41
3224 3350 6.712998 TCGGAATTACTTGTCTTGAAAATGGA 59.287 34.615 0.00 0.00 0.00 3.41
3225 3351 6.908825 TCGGAATTACTTGTCTTGAAAATGG 58.091 36.000 0.00 0.00 0.00 3.16
3226 3352 7.059488 CGTTCGGAATTACTTGTCTTGAAAATG 59.941 37.037 0.00 0.00 0.00 2.32
3227 3353 7.075741 CGTTCGGAATTACTTGTCTTGAAAAT 58.924 34.615 0.00 0.00 0.00 1.82
3228 3354 6.423862 CGTTCGGAATTACTTGTCTTGAAAA 58.576 36.000 0.00 0.00 0.00 2.29
3229 3355 5.049954 CCGTTCGGAATTACTTGTCTTGAAA 60.050 40.000 5.19 0.00 0.00 2.69
3230 3356 4.449743 CCGTTCGGAATTACTTGTCTTGAA 59.550 41.667 5.19 0.00 0.00 2.69
3231 3357 3.991773 CCGTTCGGAATTACTTGTCTTGA 59.008 43.478 5.19 0.00 0.00 3.02
3232 3358 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
3233 3359 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
3234 3360 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3235 3361 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3236 3362 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3237 3363 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3238 3364 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3239 3365 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3240 3366 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3241 3367 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3242 3368 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3243 3369 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
3244 3370 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
3245 3371 2.511659 CATATACTCCCTCCGTTCGGA 58.488 52.381 13.34 13.34 0.00 4.55
3246 3372 1.544691 CCATATACTCCCTCCGTTCGG 59.455 57.143 4.74 4.74 0.00 4.30
3247 3373 1.067776 GCCATATACTCCCTCCGTTCG 60.068 57.143 0.00 0.00 0.00 3.95
3248 3374 1.067776 CGCCATATACTCCCTCCGTTC 60.068 57.143 0.00 0.00 0.00 3.95
3249 3375 0.966920 CGCCATATACTCCCTCCGTT 59.033 55.000 0.00 0.00 0.00 4.44
3250 3376 0.111832 TCGCCATATACTCCCTCCGT 59.888 55.000 0.00 0.00 0.00 4.69
3251 3377 1.254026 TTCGCCATATACTCCCTCCG 58.746 55.000 0.00 0.00 0.00 4.63
3252 3378 3.764237 TTTTCGCCATATACTCCCTCC 57.236 47.619 0.00 0.00 0.00 4.30
3253 3379 5.305585 TGATTTTTCGCCATATACTCCCTC 58.694 41.667 0.00 0.00 0.00 4.30
3254 3380 5.304686 TGATTTTTCGCCATATACTCCCT 57.695 39.130 0.00 0.00 0.00 4.20
3255 3381 6.206634 TCAATGATTTTTCGCCATATACTCCC 59.793 38.462 0.00 0.00 0.00 4.30
3256 3382 7.041098 AGTCAATGATTTTTCGCCATATACTCC 60.041 37.037 0.00 0.00 0.00 3.85
3257 3383 7.865707 AGTCAATGATTTTTCGCCATATACTC 58.134 34.615 0.00 0.00 0.00 2.59
3258 3384 7.716998 AGAGTCAATGATTTTTCGCCATATACT 59.283 33.333 0.00 0.00 0.00 2.12
3259 3385 7.800380 CAGAGTCAATGATTTTTCGCCATATAC 59.200 37.037 0.00 0.00 0.00 1.47
3268 3394 5.343325 GGAAACGCAGAGTCAATGATTTTTC 59.657 40.000 0.00 0.00 0.00 2.29
3284 3410 1.066858 GGATCTCACTGAGGAAACGCA 60.067 52.381 6.20 0.00 38.85 5.24
3292 3418 3.724508 ATAAGCACGGATCTCACTGAG 57.275 47.619 0.00 0.00 0.00 3.35
3351 3500 6.152154 AGAGCTGAGGAACTAAAAGTAGACTC 59.848 42.308 0.00 0.00 41.55 3.36
3384 3533 1.281867 TGGGGCCTGAGAATTGTGTAG 59.718 52.381 0.84 0.00 0.00 2.74
3481 3636 2.616842 AGTACAAACAGGAAGCCGTTTG 59.383 45.455 21.08 21.08 44.73 2.93
3546 3701 8.530269 AAACGCTTTTATATTATAGGACGGAG 57.470 34.615 0.00 0.00 0.00 4.63
3547 3702 8.891671 AAAACGCTTTTATATTATAGGACGGA 57.108 30.769 0.00 0.00 0.00 4.69
3548 3703 9.377383 CAAAAACGCTTTTATATTATAGGACGG 57.623 33.333 0.00 0.00 32.85 4.79
3549 3704 9.377383 CCAAAAACGCTTTTATATTATAGGACG 57.623 33.333 0.00 0.00 32.85 4.79
3550 3705 9.177304 GCCAAAAACGCTTTTATATTATAGGAC 57.823 33.333 0.00 0.00 32.85 3.85
3551 3706 8.904834 TGCCAAAAACGCTTTTATATTATAGGA 58.095 29.630 0.00 0.00 32.85 2.94
3552 3707 8.964150 GTGCCAAAAACGCTTTTATATTATAGG 58.036 33.333 0.00 0.00 32.85 2.57
3553 3708 9.730420 AGTGCCAAAAACGCTTTTATATTATAG 57.270 29.630 0.00 0.00 32.85 1.31
3556 3711 9.724839 GATAGTGCCAAAAACGCTTTTATATTA 57.275 29.630 0.00 0.00 32.85 0.98
3557 3712 7.704899 GGATAGTGCCAAAAACGCTTTTATATT 59.295 33.333 0.00 0.00 32.85 1.28
3558 3713 7.147983 TGGATAGTGCCAAAAACGCTTTTATAT 60.148 33.333 0.00 0.00 34.31 0.86
3559 3714 6.151312 TGGATAGTGCCAAAAACGCTTTTATA 59.849 34.615 0.00 0.00 34.31 0.98
3560 3715 5.047660 TGGATAGTGCCAAAAACGCTTTTAT 60.048 36.000 0.00 0.00 34.31 1.40
3561 3716 4.278669 TGGATAGTGCCAAAAACGCTTTTA 59.721 37.500 0.00 0.00 34.31 1.52
3562 3717 3.068873 TGGATAGTGCCAAAAACGCTTTT 59.931 39.130 0.00 0.00 34.31 2.27
3563 3718 2.625790 TGGATAGTGCCAAAAACGCTTT 59.374 40.909 0.00 0.00 34.31 3.51
3564 3719 2.235016 TGGATAGTGCCAAAAACGCTT 58.765 42.857 0.00 0.00 34.31 4.68
3565 3720 1.904287 TGGATAGTGCCAAAAACGCT 58.096 45.000 0.00 0.00 34.31 5.07
3566 3721 2.939460 ATGGATAGTGCCAAAAACGC 57.061 45.000 0.00 0.00 42.16 4.84
3571 3726 8.511321 CGCTTTTATATTATGGATAGTGCCAAA 58.489 33.333 0.00 0.00 42.16 3.28
3572 3727 7.361713 GCGCTTTTATATTATGGATAGTGCCAA 60.362 37.037 0.00 0.00 42.16 4.52
3573 3728 6.093495 GCGCTTTTATATTATGGATAGTGCCA 59.907 38.462 0.00 0.00 43.23 4.92
3574 3729 6.316390 AGCGCTTTTATATTATGGATAGTGCC 59.684 38.462 2.64 0.00 0.00 5.01
3575 3730 7.308782 AGCGCTTTTATATTATGGATAGTGC 57.691 36.000 2.64 0.00 0.00 4.40
3581 3736 9.724839 GTGTAAAAAGCGCTTTTATATTATGGA 57.275 29.630 39.70 17.99 41.45 3.41
3582 3737 9.730420 AGTGTAAAAAGCGCTTTTATATTATGG 57.270 29.630 39.70 0.00 41.45 2.74
3591 3746 8.964150 CAAAATAGTAGTGTAAAAAGCGCTTTT 58.036 29.630 36.01 36.01 43.88 2.27
3592 3747 8.132995 ACAAAATAGTAGTGTAAAAAGCGCTTT 58.867 29.630 29.11 29.11 0.00 3.51
3593 3748 7.589954 CACAAAATAGTAGTGTAAAAAGCGCTT 59.410 33.333 18.98 18.98 0.00 4.68
3594 3749 7.075741 CACAAAATAGTAGTGTAAAAAGCGCT 58.924 34.615 2.64 2.64 0.00 5.92
3595 3750 6.183359 GCACAAAATAGTAGTGTAAAAAGCGC 60.183 38.462 0.00 0.00 35.75 5.92
3596 3751 7.075741 AGCACAAAATAGTAGTGTAAAAAGCG 58.924 34.615 0.00 0.00 35.75 4.68
3597 3752 8.290325 AGAGCACAAAATAGTAGTGTAAAAAGC 58.710 33.333 0.00 0.00 35.75 3.51
3600 3755 9.944663 CAAAGAGCACAAAATAGTAGTGTAAAA 57.055 29.630 0.00 0.00 35.75 1.52
3601 3756 8.564574 CCAAAGAGCACAAAATAGTAGTGTAAA 58.435 33.333 0.00 0.00 35.75 2.01
3606 3761 5.631119 ACCCAAAGAGCACAAAATAGTAGT 58.369 37.500 0.00 0.00 0.00 2.73
3640 3795 8.208224 TGACTGGGTAATGATTTCGTATATGTT 58.792 33.333 0.00 0.00 0.00 2.71
3715 7503 2.525105 AAACCACACAACTTGACCCT 57.475 45.000 0.00 0.00 0.00 4.34
3840 7628 6.346096 GGCTCCACTACAGACATATAACAAA 58.654 40.000 0.00 0.00 0.00 2.83
3878 7666 2.684001 ATGGAGCGAAACACCGAATA 57.316 45.000 0.00 0.00 0.00 1.75
3880 7668 2.028839 TCTAATGGAGCGAAACACCGAA 60.029 45.455 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.