Multiple sequence alignment - TraesCS4D01G142200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G142200 chr4D 100.000 8827 0 0 1 8827 127546735 127537909 0.000000e+00 16301.0
1 TraesCS4D01G142200 chr4D 86.616 396 47 6 7925 8315 457746023 457745629 4.890000e-117 433.0
2 TraesCS4D01G142200 chr4D 85.609 271 34 4 7925 8192 101496850 101497118 6.750000e-71 279.0
3 TraesCS4D01G142200 chr4A 94.651 5758 175 43 1 5681 440911370 440917071 0.000000e+00 8804.0
4 TraesCS4D01G142200 chr4A 95.617 1711 52 9 6141 7842 440931292 440932988 0.000000e+00 2723.0
5 TraesCS4D01G142200 chr4A 87.129 909 98 11 7925 8827 11016753 11017648 0.000000e+00 1013.0
6 TraesCS4D01G142200 chr4A 87.307 646 71 7 8186 8827 627481862 627481224 0.000000e+00 728.0
7 TraesCS4D01G142200 chr4A 85.691 601 86 0 1657 2257 744009650 744009050 1.250000e-177 634.0
8 TraesCS4D01G142200 chr4A 85.099 604 90 0 1651 2254 743330087 743330690 1.260000e-172 617.0
9 TraesCS4D01G142200 chr4A 95.000 220 11 0 5938 6157 440930521 440930740 6.560000e-91 346.0
10 TraesCS4D01G142200 chr4A 93.151 73 5 0 5901 5973 440930453 440930525 3.370000e-19 108.0
11 TraesCS4D01G142200 chr4A 97.143 35 0 1 7921 7955 127223606 127223639 3.440000e-04 58.4
12 TraesCS4D01G142200 chr4B 93.011 1302 36 14 1 1249 191646103 191644804 0.000000e+00 1849.0
13 TraesCS4D01G142200 chr7B 86.346 769 87 11 7925 8689 71085829 71086583 0.000000e+00 822.0
14 TraesCS4D01G142200 chr7B 85.047 749 104 8 7925 8668 675267950 675267205 0.000000e+00 756.0
15 TraesCS4D01G142200 chr5D 88.099 647 67 8 8186 8827 313222295 313222936 0.000000e+00 760.0
16 TraesCS4D01G142200 chr6D 88.043 644 70 5 8186 8827 69093811 69093173 0.000000e+00 756.0
17 TraesCS4D01G142200 chr1A 88.013 634 66 8 8186 8815 77654198 77654825 0.000000e+00 741.0
18 TraesCS4D01G142200 chr1A 94.737 38 2 0 7419 7456 14507076 14507113 9.570000e-05 60.2
19 TraesCS4D01G142200 chr1B 87.597 645 70 6 8186 8827 465099897 465100534 0.000000e+00 739.0
20 TraesCS4D01G142200 chr1B 94.737 38 2 0 7419 7456 18420163 18420126 9.570000e-05 60.2
21 TraesCS4D01G142200 chrUn 87.422 644 76 5 8186 8827 103278854 103278214 0.000000e+00 736.0
22 TraesCS4D01G142200 chr7D 86.842 608 80 0 1657 2264 1553220 1552613 0.000000e+00 680.0
23 TraesCS4D01G142200 chr7D 83.935 554 75 7 7384 7926 1547357 1546807 1.310000e-142 518.0
24 TraesCS4D01G142200 chr7D 76.000 150 31 5 2330 2476 1073961 1074108 1.230000e-08 73.1
25 TraesCS4D01G142200 chr5B 78.909 275 49 8 7922 8192 677911917 677912186 2.530000e-40 178.0
26 TraesCS4D01G142200 chr1D 88.281 128 8 5 8070 8192 427479846 427479971 7.140000e-31 147.0
27 TraesCS4D01G142200 chr1D 87.692 130 10 4 8070 8195 475192863 475192736 7.140000e-31 147.0
28 TraesCS4D01G142200 chr3A 85.507 138 19 1 8056 8192 729871818 729871955 9.240000e-30 143.0
29 TraesCS4D01G142200 chr3B 88.235 51 5 1 7912 7962 380089286 380089335 9.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G142200 chr4D 127537909 127546735 8826 True 16301 16301 100.000000 1 8827 1 chr4D.!!$R1 8826
1 TraesCS4D01G142200 chr4A 440911370 440917071 5701 False 8804 8804 94.651000 1 5681 1 chr4A.!!$F3 5680
2 TraesCS4D01G142200 chr4A 440930453 440932988 2535 False 1059 2723 94.589333 5901 7842 3 chr4A.!!$F5 1941
3 TraesCS4D01G142200 chr4A 11016753 11017648 895 False 1013 1013 87.129000 7925 8827 1 chr4A.!!$F1 902
4 TraesCS4D01G142200 chr4A 627481224 627481862 638 True 728 728 87.307000 8186 8827 1 chr4A.!!$R1 641
5 TraesCS4D01G142200 chr4A 744009050 744009650 600 True 634 634 85.691000 1657 2257 1 chr4A.!!$R2 600
6 TraesCS4D01G142200 chr4A 743330087 743330690 603 False 617 617 85.099000 1651 2254 1 chr4A.!!$F4 603
7 TraesCS4D01G142200 chr4B 191644804 191646103 1299 True 1849 1849 93.011000 1 1249 1 chr4B.!!$R1 1248
8 TraesCS4D01G142200 chr7B 71085829 71086583 754 False 822 822 86.346000 7925 8689 1 chr7B.!!$F1 764
9 TraesCS4D01G142200 chr7B 675267205 675267950 745 True 756 756 85.047000 7925 8668 1 chr7B.!!$R1 743
10 TraesCS4D01G142200 chr5D 313222295 313222936 641 False 760 760 88.099000 8186 8827 1 chr5D.!!$F1 641
11 TraesCS4D01G142200 chr6D 69093173 69093811 638 True 756 756 88.043000 8186 8827 1 chr6D.!!$R1 641
12 TraesCS4D01G142200 chr1A 77654198 77654825 627 False 741 741 88.013000 8186 8815 1 chr1A.!!$F2 629
13 TraesCS4D01G142200 chr1B 465099897 465100534 637 False 739 739 87.597000 8186 8827 1 chr1B.!!$F1 641
14 TraesCS4D01G142200 chrUn 103278214 103278854 640 True 736 736 87.422000 8186 8827 1 chrUn.!!$R1 641
15 TraesCS4D01G142200 chr7D 1552613 1553220 607 True 680 680 86.842000 1657 2264 1 chr7D.!!$R2 607
16 TraesCS4D01G142200 chr7D 1546807 1547357 550 True 518 518 83.935000 7384 7926 1 chr7D.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 1.238439 CTCGTTGATGGTGCCTTTGT 58.762 50.0 0.00 0.00 0.00 2.83 F
1432 1496 2.429610 TCGAGTAGCAGGGGTGTTTATC 59.570 50.0 0.00 0.00 0.00 1.75 F
2761 2825 0.098376 GCGCTTCAGCCTTTGATCAG 59.902 55.0 0.00 0.00 35.27 2.90 F
4382 4463 0.040058 TCCTGCTGCCAATCCAACAT 59.960 50.0 0.00 0.00 0.00 2.71 F
5686 5769 0.114560 TCGGAGAGAAGAACCCTGGT 59.885 55.0 0.00 0.00 0.00 4.00 F
5795 5878 0.031721 GCTTCATTATGGCCAGCAGC 59.968 55.0 13.05 4.94 42.60 5.25 F
5928 6011 0.036388 ACACCCATTACCAGCGTCAG 60.036 55.0 0.00 0.00 0.00 3.51 F
6350 7032 0.038310 CTTGTCTTTCACCCCCTCCC 59.962 60.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1645 5.047021 GCTGCATATCCTTAGACCAGACATA 60.047 44.0 0.00 0.00 0.00 2.29 R
2781 2845 0.379669 GATTCATTCACTGGCCGCAG 59.620 55.0 0.00 0.00 0.00 5.18 R
4437 4520 0.249868 TTGCTCGACAAGTCCCTGTG 60.250 55.0 0.00 0.00 33.24 3.66 R
5776 5859 0.031721 GCTGCTGGCCATAATGAAGC 59.968 55.0 5.51 6.38 34.27 3.86 R
6564 7253 0.028902 GAAGTTGGTGTGGAACGTGC 59.971 55.0 0.00 0.00 42.39 5.34 R
7619 8310 0.321919 GAGTGCATTGGAGTGCCAGA 60.322 55.0 0.00 0.00 46.91 3.86 R
7803 8494 0.179215 CGCGCTGATGTTTCTCCAAC 60.179 55.0 5.56 0.00 35.71 3.77 R
8072 8776 0.108138 ACTTTCAAGATCTCGCGGGG 60.108 55.0 5.94 0.00 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.933617 TGGAGATGACCTTAATGGATCAAG 58.066 41.667 0.00 0.00 39.71 3.02
70 71 1.238439 CTCGTTGATGGTGCCTTTGT 58.762 50.000 0.00 0.00 0.00 2.83
220 239 6.352651 GGGAAGGGTTATGTTTTGCCAAATAT 60.353 38.462 0.00 0.00 32.06 1.28
365 386 5.044476 TGGGCCTATAAGTCCTTCATTGAAA 60.044 40.000 4.53 0.00 0.00 2.69
382 403 3.826524 TGAAAAGGCACACCACTTGATA 58.173 40.909 0.00 0.00 39.06 2.15
856 907 2.903855 GGAGACGCGGGATCGGTA 60.904 66.667 12.47 0.00 36.79 4.02
860 911 3.067480 GACGCGGGATCGGTAACCA 62.067 63.158 12.47 0.00 36.79 3.67
910 961 9.149225 CATCACTCTACTCATTAATAATCTGCC 57.851 37.037 0.00 0.00 0.00 4.85
1015 1066 2.747460 GCATGCTTCCTCGCCACA 60.747 61.111 11.37 0.00 0.00 4.17
1213 1271 3.777478 TCGGATTTGAGGAACGTATCAC 58.223 45.455 0.00 0.00 0.00 3.06
1432 1496 2.429610 TCGAGTAGCAGGGGTGTTTATC 59.570 50.000 0.00 0.00 0.00 1.75
1440 1504 4.080526 AGCAGGGGTGTTTATCGAAATACT 60.081 41.667 0.00 0.00 36.99 2.12
1441 1505 5.129815 AGCAGGGGTGTTTATCGAAATACTA 59.870 40.000 0.00 0.00 36.99 1.82
1442 1506 5.995897 GCAGGGGTGTTTATCGAAATACTAT 59.004 40.000 0.00 0.00 36.99 2.12
1488 1552 6.314648 TCACTGATTTGATTTCTTCATCTCCG 59.685 38.462 0.00 0.00 33.34 4.63
1581 1645 5.833131 ACCATGTTAAATCACTGTTTCAGGT 59.167 36.000 1.90 0.00 35.51 4.00
2281 2345 9.435688 GACCAAGCATTATTTAATGTTTCCTTT 57.564 29.630 8.79 0.00 42.57 3.11
2351 2415 1.298382 AGGTTCCCAGATGACCCCTAT 59.702 52.381 0.00 0.00 33.89 2.57
2414 2478 3.058501 CAGACGTACCCAACAAATCCAAC 60.059 47.826 0.00 0.00 0.00 3.77
2761 2825 0.098376 GCGCTTCAGCCTTTGATCAG 59.902 55.000 0.00 0.00 35.27 2.90
2781 2845 1.590238 GCGCGATGGAGATATACATGC 59.410 52.381 12.10 0.00 0.00 4.06
2803 2867 1.599542 GCGGCCAGTGAATGAATCTAC 59.400 52.381 2.24 0.00 0.00 2.59
2804 2868 2.213499 CGGCCAGTGAATGAATCTACC 58.787 52.381 2.24 0.00 0.00 3.18
2805 2869 2.419990 CGGCCAGTGAATGAATCTACCA 60.420 50.000 2.24 0.00 0.00 3.25
2806 2870 2.945668 GGCCAGTGAATGAATCTACCAC 59.054 50.000 0.00 0.00 0.00 4.16
2807 2871 3.370953 GGCCAGTGAATGAATCTACCACT 60.371 47.826 0.00 0.00 38.48 4.00
2839 2903 6.975196 AGATGGTATATGCTATAGCTCTGG 57.025 41.667 24.61 0.00 42.66 3.86
3183 3252 9.906660 TTACAAGATTCGTAGAAAAATGCAAAT 57.093 25.926 0.00 0.00 45.90 2.32
3223 3292 6.331170 GTTCTTTTGAGAACGTGCAAAAAT 57.669 33.333 18.57 0.00 41.70 1.82
3257 3326 6.588719 TCTTTGCATTAAGTGGCATAAAGT 57.411 33.333 0.00 0.00 40.17 2.66
3273 3342 0.252057 AAGTATGGGGTTGGTTGGCC 60.252 55.000 0.00 0.00 0.00 5.36
3275 3344 3.948004 TATGGGGTTGGTTGGCCGC 62.948 63.158 0.00 0.00 37.67 6.53
3459 3528 2.624838 ACCACTGTTCTGCTGAATTTGG 59.375 45.455 20.11 20.11 35.79 3.28
3635 3704 3.324268 TCTTTTGCATGGAATGGCTTGAA 59.676 39.130 0.00 0.00 46.86 2.69
3650 3719 8.494016 AATGGCTTGAAACTGTAGTTATACTC 57.506 34.615 0.00 0.00 37.25 2.59
3760 3832 4.085357 TGTACACCAGAAACTGCAGATT 57.915 40.909 23.35 16.10 0.00 2.40
3762 3834 5.237815 TGTACACCAGAAACTGCAGATTAG 58.762 41.667 23.35 10.94 0.00 1.73
3931 4003 3.209410 CCCAGATAAGAAAGAGCGCATT 58.791 45.455 11.47 0.00 0.00 3.56
3956 4028 6.636705 TGTTTGTAGCTAGTCCGTGAATTAT 58.363 36.000 0.00 0.00 0.00 1.28
4077 4149 8.989653 AGAAGCTACAGACTTGTAAAAGTATC 57.010 34.615 0.00 0.00 39.21 2.24
4106 4178 7.979444 TCCGTCTGAATTTCTAATCAAACTT 57.021 32.000 0.00 0.00 0.00 2.66
4190 4263 9.532697 CAGTCATTTTTGTTTTTGAGTTTCAAG 57.467 29.630 0.00 0.00 37.70 3.02
4313 4394 4.403752 CAGTCTGTCTGGATCAATACCTGA 59.596 45.833 0.00 0.00 40.23 3.86
4372 4453 1.340017 TGTTCCTGTATTCCTGCTGCC 60.340 52.381 0.00 0.00 0.00 4.85
4374 4455 0.991146 TCCTGTATTCCTGCTGCCAA 59.009 50.000 0.00 0.00 0.00 4.52
4375 4456 1.565759 TCCTGTATTCCTGCTGCCAAT 59.434 47.619 0.00 0.00 0.00 3.16
4377 4458 1.952296 CTGTATTCCTGCTGCCAATCC 59.048 52.381 0.00 0.00 0.00 3.01
4379 4460 2.291475 TGTATTCCTGCTGCCAATCCAA 60.291 45.455 0.00 0.00 0.00 3.53
4380 4461 1.188863 ATTCCTGCTGCCAATCCAAC 58.811 50.000 0.00 0.00 0.00 3.77
4381 4462 0.178967 TTCCTGCTGCCAATCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
4382 4463 0.040058 TCCTGCTGCCAATCCAACAT 59.960 50.000 0.00 0.00 0.00 2.71
4383 4464 0.458669 CCTGCTGCCAATCCAACATC 59.541 55.000 0.00 0.00 0.00 3.06
4437 4520 5.000012 TCAATCTTTAGTCTTCGCCTCTC 58.000 43.478 0.00 0.00 0.00 3.20
4438 4521 4.462834 TCAATCTTTAGTCTTCGCCTCTCA 59.537 41.667 0.00 0.00 0.00 3.27
4548 4631 7.218204 GGTTTGCACATGTTTCGAGTATATTTC 59.782 37.037 0.00 0.00 0.00 2.17
4670 4753 5.691754 GCTGTTGTCAAATAAAAGTGGAAGG 59.308 40.000 0.00 0.00 0.00 3.46
4707 4790 7.064728 CGAAAGAGGCAATTTAGTAGTTTAGCT 59.935 37.037 0.00 0.00 0.00 3.32
4708 4791 7.617041 AAGAGGCAATTTAGTAGTTTAGCTG 57.383 36.000 0.00 0.00 0.00 4.24
4709 4792 5.586643 AGAGGCAATTTAGTAGTTTAGCTGC 59.413 40.000 0.00 0.00 0.00 5.25
4729 4812 5.222079 TGCCAACAGTATTCAAGACAGTA 57.778 39.130 0.00 0.00 0.00 2.74
4815 4898 7.653713 AGTTATGCTACAATCTTTCACCTATCG 59.346 37.037 0.00 0.00 0.00 2.92
4829 4912 6.045072 TCACCTATCGGTATTCTGTTTTGT 57.955 37.500 0.00 0.00 43.24 2.83
4839 4922 2.427232 TCTGTTTTGTAGGGTCGACG 57.573 50.000 9.92 0.00 0.00 5.12
4850 4933 2.196319 GGTCGACGATAACCCAGGT 58.804 57.895 9.92 0.00 0.00 4.00
4971 5054 5.629079 ACTAGTTCTGGCTGTATTTTTGC 57.371 39.130 0.00 0.00 0.00 3.68
4982 5065 5.695816 GGCTGTATTTTTGCTTGTCATTTGA 59.304 36.000 0.00 0.00 0.00 2.69
5013 5096 1.211457 AGAAGAGGCCAGGTAATGCAG 59.789 52.381 5.01 0.00 0.00 4.41
5041 5124 7.759886 TGACAGTACTTCATAAACAGTAGCATC 59.240 37.037 0.00 0.00 0.00 3.91
5084 5167 3.137176 TGATTGTCCTTCATCCTGGATCC 59.863 47.826 6.13 4.20 34.58 3.36
5145 5228 7.792374 TCTGGCTCATTCAACTAATACATTC 57.208 36.000 0.00 0.00 0.00 2.67
5319 5402 4.388577 AGGGAATACAGAGTTTTTGGCT 57.611 40.909 0.00 0.00 0.00 4.75
5348 5431 9.092876 GGTATATCTACATTATTTGCTCAGCTC 57.907 37.037 0.00 0.00 0.00 4.09
5358 5441 9.309516 CATTATTTGCTCAGCTCAACAAATTAT 57.690 29.630 17.67 13.20 41.57 1.28
5370 5453 8.960591 AGCTCAACAAATTATTAGCTATGTTGT 58.039 29.630 24.40 14.63 44.74 3.32
5399 5482 5.170748 TCGTATACATATTGCAGGCTCATG 58.829 41.667 3.32 0.00 0.00 3.07
5472 5555 3.652869 AGAACTTGGTCTCCTTGATTGGA 59.347 43.478 0.00 0.00 34.52 3.53
5503 5586 7.657336 CAAGGACAAGAAACATTTAAGCCTTA 58.343 34.615 0.00 0.00 31.37 2.69
5530 5613 3.871594 CGAGTACATGGATGAAGGAAACC 59.128 47.826 0.00 0.00 0.00 3.27
5570 5653 3.982701 GGTTTGTAAATTTGCCCACGTAC 59.017 43.478 0.00 0.00 0.00 3.67
5574 5657 2.911819 AAATTTGCCCACGTACATCG 57.088 45.000 0.00 0.00 46.00 3.84
5623 5706 7.892778 TGACGTAATTGTTAAGCATGTTCTA 57.107 32.000 0.00 0.00 0.00 2.10
5671 5754 5.475719 CATACCTTGTAGTTTTCTGTCGGA 58.524 41.667 0.00 0.00 0.00 4.55
5672 5755 3.991367 ACCTTGTAGTTTTCTGTCGGAG 58.009 45.455 0.00 0.00 0.00 4.63
5673 5756 3.640029 ACCTTGTAGTTTTCTGTCGGAGA 59.360 43.478 0.00 0.00 0.00 3.71
5674 5757 4.238514 CCTTGTAGTTTTCTGTCGGAGAG 58.761 47.826 0.00 0.00 36.95 3.20
5675 5758 4.022242 CCTTGTAGTTTTCTGTCGGAGAGA 60.022 45.833 0.00 0.00 36.95 3.10
5676 5759 5.509163 CCTTGTAGTTTTCTGTCGGAGAGAA 60.509 44.000 13.03 13.03 36.95 2.87
5677 5760 5.122512 TGTAGTTTTCTGTCGGAGAGAAG 57.877 43.478 15.95 0.00 36.95 2.85
5678 5761 4.825634 TGTAGTTTTCTGTCGGAGAGAAGA 59.174 41.667 15.95 10.30 36.95 2.87
5679 5762 4.939052 AGTTTTCTGTCGGAGAGAAGAA 57.061 40.909 15.95 11.29 36.95 2.52
5680 5763 4.623002 AGTTTTCTGTCGGAGAGAAGAAC 58.377 43.478 21.41 21.41 36.95 3.01
5681 5764 3.662247 TTTCTGTCGGAGAGAAGAACC 57.338 47.619 15.95 0.00 36.95 3.62
5682 5765 1.546961 TCTGTCGGAGAGAAGAACCC 58.453 55.000 1.85 0.00 36.95 4.11
5683 5766 1.075698 TCTGTCGGAGAGAAGAACCCT 59.924 52.381 1.85 0.00 36.95 4.34
5684 5767 1.203523 CTGTCGGAGAGAAGAACCCTG 59.796 57.143 0.00 0.00 36.95 4.45
5685 5768 0.533032 GTCGGAGAGAAGAACCCTGG 59.467 60.000 0.00 0.00 36.95 4.45
5686 5769 0.114560 TCGGAGAGAAGAACCCTGGT 59.885 55.000 0.00 0.00 0.00 4.00
5687 5770 1.356738 TCGGAGAGAAGAACCCTGGTA 59.643 52.381 0.00 0.00 0.00 3.25
5688 5771 2.024273 TCGGAGAGAAGAACCCTGGTAT 60.024 50.000 0.00 0.00 0.00 2.73
5689 5772 2.101582 CGGAGAGAAGAACCCTGGTATG 59.898 54.545 0.00 0.00 0.00 2.39
5690 5773 2.158885 GGAGAGAAGAACCCTGGTATGC 60.159 54.545 0.00 0.00 0.00 3.14
5691 5774 2.501723 GAGAGAAGAACCCTGGTATGCA 59.498 50.000 0.00 0.00 0.00 3.96
5692 5775 3.118531 AGAGAAGAACCCTGGTATGCAT 58.881 45.455 3.79 3.79 0.00 3.96
5693 5776 3.525199 AGAGAAGAACCCTGGTATGCATT 59.475 43.478 3.54 0.00 0.00 3.56
5694 5777 3.624777 AGAAGAACCCTGGTATGCATTG 58.375 45.455 3.54 0.00 0.00 2.82
5695 5778 1.767759 AGAACCCTGGTATGCATTGC 58.232 50.000 3.54 0.46 0.00 3.56
5696 5779 1.285962 AGAACCCTGGTATGCATTGCT 59.714 47.619 3.54 0.00 0.00 3.91
5697 5780 2.102578 GAACCCTGGTATGCATTGCTT 58.897 47.619 3.54 6.23 0.00 3.91
5698 5781 3.053693 AGAACCCTGGTATGCATTGCTTA 60.054 43.478 3.54 5.15 0.00 3.09
5699 5782 3.380471 ACCCTGGTATGCATTGCTTAA 57.620 42.857 3.54 0.00 0.00 1.85
5700 5783 3.290710 ACCCTGGTATGCATTGCTTAAG 58.709 45.455 3.54 0.00 0.00 1.85
5701 5784 2.035066 CCCTGGTATGCATTGCTTAAGC 59.965 50.000 20.84 20.84 42.50 3.09
5702 5785 2.954318 CCTGGTATGCATTGCTTAAGCT 59.046 45.455 26.90 9.29 42.66 3.74
5703 5786 3.382546 CCTGGTATGCATTGCTTAAGCTT 59.617 43.478 26.90 12.71 42.66 3.74
5704 5787 4.580167 CCTGGTATGCATTGCTTAAGCTTA 59.420 41.667 26.90 15.83 42.66 3.09
5705 5788 5.278169 CCTGGTATGCATTGCTTAAGCTTAG 60.278 44.000 26.90 16.86 42.66 2.18
5706 5789 4.036734 TGGTATGCATTGCTTAAGCTTAGC 59.963 41.667 26.90 24.49 42.66 3.09
5707 5790 4.036734 GGTATGCATTGCTTAAGCTTAGCA 59.963 41.667 29.30 29.30 46.26 3.49
5711 5794 3.225272 TGCTTAAGCTTAGCACGCA 57.775 47.368 26.90 16.97 43.30 5.24
5712 5795 1.078709 TGCTTAAGCTTAGCACGCAG 58.921 50.000 26.90 10.24 43.30 5.18
5713 5796 0.247854 GCTTAAGCTTAGCACGCAGC 60.248 55.000 20.38 13.84 40.13 5.25
5715 5798 4.672591 GCTTAAGCTTAGCACGCAGCTG 62.673 54.545 20.38 10.11 46.01 4.24
5724 5807 4.342987 ACGCAGCTGACGCTCGAA 62.343 61.111 20.43 0.00 45.15 3.71
5725 5808 3.832171 CGCAGCTGACGCTCGAAC 61.832 66.667 20.43 0.00 45.15 3.95
5726 5809 2.734723 GCAGCTGACGCTCGAACA 60.735 61.111 20.43 0.00 45.15 3.18
5727 5810 2.310233 GCAGCTGACGCTCGAACAA 61.310 57.895 20.43 0.00 45.15 2.83
5728 5811 1.777819 CAGCTGACGCTCGAACAAG 59.222 57.895 8.42 0.00 45.15 3.16
5729 5812 0.941463 CAGCTGACGCTCGAACAAGT 60.941 55.000 8.42 0.00 45.15 3.16
5730 5813 0.941463 AGCTGACGCTCGAACAAGTG 60.941 55.000 0.00 0.00 45.15 3.16
5731 5814 0.939577 GCTGACGCTCGAACAAGTGA 60.940 55.000 0.00 0.00 0.00 3.41
5732 5815 1.487482 CTGACGCTCGAACAAGTGAA 58.513 50.000 0.00 0.00 0.00 3.18
5733 5816 1.190323 CTGACGCTCGAACAAGTGAAC 59.810 52.381 0.00 0.00 0.00 3.18
5734 5817 1.205657 GACGCTCGAACAAGTGAACA 58.794 50.000 0.00 0.00 0.00 3.18
5735 5818 1.792949 GACGCTCGAACAAGTGAACAT 59.207 47.619 0.00 0.00 0.00 2.71
5736 5819 2.210116 ACGCTCGAACAAGTGAACATT 58.790 42.857 0.00 0.00 0.00 2.71
5737 5820 2.032894 ACGCTCGAACAAGTGAACATTG 60.033 45.455 0.00 0.00 0.00 2.82
5738 5821 2.032894 CGCTCGAACAAGTGAACATTGT 60.033 45.455 0.00 0.00 42.55 2.71
5745 5828 5.384063 AACAAGTGAACATTGTTGTGTGA 57.616 34.783 6.80 0.00 46.33 3.58
5746 5829 4.732784 ACAAGTGAACATTGTTGTGTGAC 58.267 39.130 6.80 0.00 37.61 3.67
5747 5830 4.458989 ACAAGTGAACATTGTTGTGTGACT 59.541 37.500 6.80 0.00 37.61 3.41
5748 5831 4.882671 AGTGAACATTGTTGTGTGACTC 57.117 40.909 6.80 0.00 35.83 3.36
5749 5832 3.309682 AGTGAACATTGTTGTGTGACTCG 59.690 43.478 6.80 0.00 35.83 4.18
5750 5833 3.308595 GTGAACATTGTTGTGTGACTCGA 59.691 43.478 6.80 0.00 35.83 4.04
5751 5834 4.024893 GTGAACATTGTTGTGTGACTCGAT 60.025 41.667 6.80 0.00 35.83 3.59
5752 5835 4.211164 TGAACATTGTTGTGTGACTCGATC 59.789 41.667 6.80 0.00 35.83 3.69
5753 5836 3.727726 ACATTGTTGTGTGACTCGATCA 58.272 40.909 0.00 0.00 33.85 2.92
5754 5837 4.126437 ACATTGTTGTGTGACTCGATCAA 58.874 39.130 0.00 0.00 39.72 2.57
5755 5838 4.212004 ACATTGTTGTGTGACTCGATCAAG 59.788 41.667 0.00 0.00 39.72 3.02
5756 5839 2.135139 TGTTGTGTGACTCGATCAAGC 58.865 47.619 0.00 0.00 39.72 4.01
5757 5840 2.135139 GTTGTGTGACTCGATCAAGCA 58.865 47.619 0.00 0.00 39.72 3.91
5758 5841 2.524569 TGTGTGACTCGATCAAGCAA 57.475 45.000 0.00 0.00 39.72 3.91
5759 5842 3.044235 TGTGTGACTCGATCAAGCAAT 57.956 42.857 0.00 0.00 39.72 3.56
5760 5843 2.995939 TGTGTGACTCGATCAAGCAATC 59.004 45.455 0.00 0.00 39.72 2.67
5761 5844 2.995939 GTGTGACTCGATCAAGCAATCA 59.004 45.455 0.00 0.00 39.72 2.57
5762 5845 3.433274 GTGTGACTCGATCAAGCAATCAA 59.567 43.478 0.00 0.00 39.72 2.57
5763 5846 3.681417 TGTGACTCGATCAAGCAATCAAG 59.319 43.478 0.00 0.00 39.72 3.02
5764 5847 3.928992 GTGACTCGATCAAGCAATCAAGA 59.071 43.478 0.00 0.00 39.72 3.02
5765 5848 4.569966 GTGACTCGATCAAGCAATCAAGAT 59.430 41.667 0.00 0.00 39.72 2.40
5766 5849 4.807834 TGACTCGATCAAGCAATCAAGATC 59.192 41.667 0.00 0.00 33.02 2.75
5767 5850 4.763073 ACTCGATCAAGCAATCAAGATCA 58.237 39.130 0.00 0.00 37.36 2.92
5768 5851 4.569966 ACTCGATCAAGCAATCAAGATCAC 59.430 41.667 0.00 0.00 37.36 3.06
5769 5852 4.763073 TCGATCAAGCAATCAAGATCACT 58.237 39.130 0.00 0.00 37.36 3.41
5770 5853 4.569564 TCGATCAAGCAATCAAGATCACTG 59.430 41.667 0.00 0.00 37.36 3.66
5771 5854 4.260661 CGATCAAGCAATCAAGATCACTGG 60.261 45.833 0.00 0.00 37.36 4.00
5772 5855 2.751259 TCAAGCAATCAAGATCACTGGC 59.249 45.455 0.00 0.00 0.00 4.85
5773 5856 1.376543 AGCAATCAAGATCACTGGCG 58.623 50.000 0.00 0.00 0.00 5.69
5774 5857 0.379669 GCAATCAAGATCACTGGCGG 59.620 55.000 0.00 0.00 0.00 6.13
5775 5858 2.013563 GCAATCAAGATCACTGGCGGA 61.014 52.381 0.00 0.00 0.00 5.54
5776 5859 1.938577 CAATCAAGATCACTGGCGGAG 59.061 52.381 0.00 0.00 0.00 4.63
5790 5873 3.402186 CGGAGCTTCATTATGGCCA 57.598 52.632 8.56 8.56 0.00 5.36
5791 5874 1.233019 CGGAGCTTCATTATGGCCAG 58.767 55.000 13.05 0.00 0.00 4.85
5792 5875 0.957362 GGAGCTTCATTATGGCCAGC 59.043 55.000 13.05 7.25 0.00 4.85
5793 5876 1.683943 GAGCTTCATTATGGCCAGCA 58.316 50.000 13.05 0.00 32.58 4.41
5794 5877 1.607628 GAGCTTCATTATGGCCAGCAG 59.392 52.381 13.05 0.00 32.58 4.24
5795 5878 0.031721 GCTTCATTATGGCCAGCAGC 59.968 55.000 13.05 4.94 42.60 5.25
5815 5898 3.466714 CCCCCAAGCCAAAACCTAA 57.533 52.632 0.00 0.00 0.00 2.69
5816 5899 1.723288 CCCCCAAGCCAAAACCTAAA 58.277 50.000 0.00 0.00 0.00 1.85
5817 5900 2.050918 CCCCCAAGCCAAAACCTAAAA 58.949 47.619 0.00 0.00 0.00 1.52
5818 5901 2.439880 CCCCCAAGCCAAAACCTAAAAA 59.560 45.455 0.00 0.00 0.00 1.94
5852 5935 2.719376 GCAGTTGCTCAAGTTGGGA 58.281 52.632 7.01 0.00 38.21 4.37
5853 5936 0.312102 GCAGTTGCTCAAGTTGGGAC 59.688 55.000 7.01 0.00 38.21 4.46
5854 5937 1.972872 CAGTTGCTCAAGTTGGGACT 58.027 50.000 7.01 0.00 37.87 3.85
5855 5938 2.810400 GCAGTTGCTCAAGTTGGGACTA 60.810 50.000 7.01 0.00 34.73 2.59
5856 5939 3.070018 CAGTTGCTCAAGTTGGGACTAG 58.930 50.000 7.01 0.00 34.21 2.57
5857 5940 2.972713 AGTTGCTCAAGTTGGGACTAGA 59.027 45.455 7.01 0.00 34.21 2.43
5858 5941 3.391296 AGTTGCTCAAGTTGGGACTAGAA 59.609 43.478 7.01 0.00 34.21 2.10
5859 5942 4.134563 GTTGCTCAAGTTGGGACTAGAAA 58.865 43.478 7.01 0.00 34.21 2.52
5860 5943 4.008074 TGCTCAAGTTGGGACTAGAAAG 57.992 45.455 7.01 0.00 34.21 2.62
5861 5944 3.244561 TGCTCAAGTTGGGACTAGAAAGG 60.245 47.826 7.01 0.00 34.21 3.11
5862 5945 3.008049 GCTCAAGTTGGGACTAGAAAGGA 59.992 47.826 7.01 0.00 34.21 3.36
5863 5946 4.505039 GCTCAAGTTGGGACTAGAAAGGAA 60.505 45.833 7.01 0.00 34.21 3.36
5864 5947 5.621193 CTCAAGTTGGGACTAGAAAGGAAA 58.379 41.667 0.00 0.00 34.21 3.13
5865 5948 6.200878 TCAAGTTGGGACTAGAAAGGAAAT 57.799 37.500 2.34 0.00 34.21 2.17
5866 5949 6.610830 TCAAGTTGGGACTAGAAAGGAAATT 58.389 36.000 2.34 0.00 34.21 1.82
5867 5950 7.066781 TCAAGTTGGGACTAGAAAGGAAATTT 58.933 34.615 2.34 0.00 34.21 1.82
5868 5951 7.563556 TCAAGTTGGGACTAGAAAGGAAATTTT 59.436 33.333 2.34 0.00 34.21 1.82
5869 5952 7.914427 AGTTGGGACTAGAAAGGAAATTTTT 57.086 32.000 0.00 0.00 33.32 1.94
5886 5969 3.967203 TTTTTGCTGCATTTTTCAGGC 57.033 38.095 1.84 0.00 32.41 4.85
5887 5970 1.881591 TTTGCTGCATTTTTCAGGCC 58.118 45.000 1.84 0.00 32.41 5.19
5888 5971 1.050204 TTGCTGCATTTTTCAGGCCT 58.950 45.000 0.00 0.00 32.41 5.19
5889 5972 1.050204 TGCTGCATTTTTCAGGCCTT 58.950 45.000 0.00 0.00 32.41 4.35
5890 5973 2.246469 TGCTGCATTTTTCAGGCCTTA 58.754 42.857 0.00 0.00 32.41 2.69
5891 5974 2.833338 TGCTGCATTTTTCAGGCCTTAT 59.167 40.909 0.00 0.00 32.41 1.73
5892 5975 3.192466 GCTGCATTTTTCAGGCCTTATG 58.808 45.455 0.00 3.32 32.41 1.90
5893 5976 3.368739 GCTGCATTTTTCAGGCCTTATGT 60.369 43.478 0.00 0.00 32.41 2.29
5894 5977 4.824289 CTGCATTTTTCAGGCCTTATGTT 58.176 39.130 0.00 0.00 0.00 2.71
5895 5978 5.624281 GCTGCATTTTTCAGGCCTTATGTTA 60.624 40.000 0.00 0.00 32.41 2.41
5896 5979 5.964758 TGCATTTTTCAGGCCTTATGTTAG 58.035 37.500 0.00 0.00 0.00 2.34
5897 5980 5.105392 TGCATTTTTCAGGCCTTATGTTAGG 60.105 40.000 0.00 0.00 38.40 2.69
5907 5990 1.603802 CTTATGTTAGGCCCATGTGCG 59.396 52.381 0.00 0.00 0.00 5.34
5922 6005 1.673993 TGCGCACACCCATTACCAG 60.674 57.895 5.66 0.00 0.00 4.00
5928 6011 0.036388 ACACCCATTACCAGCGTCAG 60.036 55.000 0.00 0.00 0.00 3.51
5963 6046 1.981853 GGCCTCCCATTTCGGCAAA 60.982 57.895 0.00 0.00 45.53 3.68
5973 6056 3.694072 CCATTTCGGCAAATTCTGGTCTA 59.306 43.478 0.00 0.00 28.97 2.59
5974 6057 4.201950 CCATTTCGGCAAATTCTGGTCTAG 60.202 45.833 0.00 0.00 28.97 2.43
5981 6095 2.386661 AATTCTGGTCTAGCACACCG 57.613 50.000 0.00 0.00 36.61 4.94
6047 6161 1.418264 TGAAGGTCAAATCGGTCACCA 59.582 47.619 0.00 0.00 0.00 4.17
6144 6258 9.577110 CATTAATTTGTTCTAGACCGTACACTA 57.423 33.333 0.00 0.00 0.00 2.74
6338 7020 7.051623 TGCGGTGGTATATAATTTCTTGTCTT 58.948 34.615 0.00 0.00 0.00 3.01
6339 7021 7.554835 TGCGGTGGTATATAATTTCTTGTCTTT 59.445 33.333 0.00 0.00 0.00 2.52
6341 7023 9.104965 CGGTGGTATATAATTTCTTGTCTTTCA 57.895 33.333 0.00 0.00 0.00 2.69
6347 7029 3.903530 ATTTCTTGTCTTTCACCCCCT 57.096 42.857 0.00 0.00 0.00 4.79
6348 7030 2.951229 TTCTTGTCTTTCACCCCCTC 57.049 50.000 0.00 0.00 0.00 4.30
6350 7032 0.038310 CTTGTCTTTCACCCCCTCCC 59.962 60.000 0.00 0.00 0.00 4.30
6352 7034 1.541620 GTCTTTCACCCCCTCCCCT 60.542 63.158 0.00 0.00 0.00 4.79
6353 7035 1.229853 TCTTTCACCCCCTCCCCTC 60.230 63.158 0.00 0.00 0.00 4.30
6354 7036 2.204244 TTTCACCCCCTCCCCTCC 60.204 66.667 0.00 0.00 0.00 4.30
6355 7037 3.902927 TTTCACCCCCTCCCCTCCC 62.903 68.421 0.00 0.00 0.00 4.30
6375 7057 2.864343 CCCGCGTGAAATTCCTACTTAG 59.136 50.000 4.92 0.00 0.00 2.18
6401 7083 1.065418 CCACTGACCAATACCCCTGTC 60.065 57.143 0.00 0.00 0.00 3.51
6403 7085 2.305927 CACTGACCAATACCCCTGTCTT 59.694 50.000 0.00 0.00 0.00 3.01
6442 7124 7.095355 GCAGAAATAATCATCAAAATCCATGCC 60.095 37.037 0.00 0.00 0.00 4.40
6493 7175 3.193691 ACATCCGACAACTTAGTCTCCTG 59.806 47.826 0.00 0.00 36.38 3.86
6494 7176 2.168496 TCCGACAACTTAGTCTCCTGG 58.832 52.381 0.00 0.00 36.38 4.45
6495 7177 2.168496 CCGACAACTTAGTCTCCTGGA 58.832 52.381 0.00 0.00 36.38 3.86
6509 7191 3.764434 TCTCCTGGAGACACACAATAGAC 59.236 47.826 22.30 0.00 33.35 2.59
6510 7192 2.492088 TCCTGGAGACACACAATAGACG 59.508 50.000 0.00 0.00 35.60 4.18
6553 7242 4.241555 ATGCGACAGGCCCGATCC 62.242 66.667 0.00 0.00 42.61 3.36
6557 7246 1.815421 CGACAGGCCCGATCCTTTG 60.815 63.158 0.00 0.00 33.25 2.77
6564 7253 4.875713 CCGATCCTTTGGCCCCGG 62.876 72.222 0.00 0.00 0.00 5.73
6606 7295 1.600023 AGGTCGTTCGGCATTGAAAA 58.400 45.000 0.00 0.00 0.00 2.29
6622 7311 3.082548 TGAAAAACAACGGAACACCTGA 58.917 40.909 0.00 0.00 0.00 3.86
6635 7324 2.261671 CCTGAACGGACCGTGGAG 59.738 66.667 22.53 18.30 39.99 3.86
6770 7459 1.078143 AGGAGCTCAAACATCCGGC 60.078 57.895 17.19 0.00 38.20 6.13
6859 7548 5.281314 ACTTCATCAGGTTACCAGGTCTAT 58.719 41.667 3.51 0.00 0.00 1.98
6867 7556 7.571025 TCAGGTTACCAGGTCTATTAATTTCC 58.429 38.462 3.51 0.00 0.00 3.13
7056 7746 8.500773 GTGTATCCAAACGTTTCTCTTTGATTA 58.499 33.333 11.37 0.00 30.20 1.75
7085 7775 6.278172 TGTGATAGATCATCTATGCACTCC 57.722 41.667 23.54 9.07 39.63 3.85
7099 7789 8.677148 TCTATGCACTCCAACTTAAATTATCC 57.323 34.615 0.00 0.00 0.00 2.59
7128 7818 7.437748 CAATTCTTATAGGACTGGAGTACCTG 58.562 42.308 0.00 0.00 40.30 4.00
7244 7934 1.321474 CTGACAAGGGCTTTCAGCAA 58.679 50.000 0.00 0.00 44.75 3.91
7493 8184 1.269465 CGAGCGATCATCACCATCAGT 60.269 52.381 0.00 0.00 0.00 3.41
7560 8251 2.104622 TCTGAAGGTGACATTGACAGCA 59.895 45.455 17.89 0.24 38.08 4.41
7619 8310 1.515954 CGTGTGGAAGGTAGCGGAT 59.484 57.895 0.00 0.00 0.00 4.18
7716 8407 0.527385 CTTGCAGCTAGAGACCTCGC 60.527 60.000 0.00 0.00 34.09 5.03
7803 8494 2.383527 GCGCTTGAGACGGAACTGG 61.384 63.158 0.00 0.00 0.00 4.00
7843 8534 4.212214 GCGTTGACATTCCTGGATTAGATC 59.788 45.833 0.00 0.00 0.00 2.75
7865 8556 6.126863 TCCACTTTGGATCATTAGTTGAGT 57.873 37.500 0.00 0.00 42.67 3.41
7866 8557 6.542821 TCCACTTTGGATCATTAGTTGAGTT 58.457 36.000 0.00 0.00 42.67 3.01
7868 8559 6.088824 CACTTTGGATCATTAGTTGAGTTGC 58.911 40.000 0.00 0.00 37.89 4.17
7888 8587 4.228912 GCGATTTGCACTATATGGCTTT 57.771 40.909 0.00 0.00 45.45 3.51
7890 8589 4.539870 CGATTTGCACTATATGGCTTTGG 58.460 43.478 0.00 0.00 0.00 3.28
7891 8590 4.275689 CGATTTGCACTATATGGCTTTGGA 59.724 41.667 0.00 0.00 0.00 3.53
7893 8592 3.213206 TGCACTATATGGCTTTGGAGG 57.787 47.619 0.00 0.00 0.00 4.30
7894 8593 2.509548 TGCACTATATGGCTTTGGAGGT 59.490 45.455 0.00 0.00 0.00 3.85
7896 8595 3.954258 GCACTATATGGCTTTGGAGGTTT 59.046 43.478 0.00 0.00 0.00 3.27
7897 8596 5.130350 GCACTATATGGCTTTGGAGGTTTA 58.870 41.667 0.00 0.00 0.00 2.01
7898 8597 5.592688 GCACTATATGGCTTTGGAGGTTTAA 59.407 40.000 0.00 0.00 0.00 1.52
7899 8598 6.238759 GCACTATATGGCTTTGGAGGTTTAAG 60.239 42.308 0.00 0.00 0.00 1.85
7900 8599 5.828328 ACTATATGGCTTTGGAGGTTTAAGC 59.172 40.000 0.00 0.00 42.65 3.09
7908 8607 5.812127 GCTTTGGAGGTTTAAGCCAATATTG 59.188 40.000 11.28 8.58 40.99 1.90
7915 8614 7.177392 GGAGGTTTAAGCCAATATTGCTCATAT 59.823 37.037 11.28 0.00 38.34 1.78
7916 8615 9.231297 GAGGTTTAAGCCAATATTGCTCATATA 57.769 33.333 11.28 0.00 38.34 0.86
7919 8618 9.231297 GTTTAAGCCAATATTGCTCATATAGGA 57.769 33.333 10.11 0.00 38.34 2.94
7934 8633 7.307632 GCTCATATAGGAAAACACTAGCACATG 60.308 40.741 0.00 0.00 0.00 3.21
7958 8657 2.676121 TGCGTTGCAATGGGGAGG 60.676 61.111 19.93 0.00 34.76 4.30
7964 8663 2.495669 CGTTGCAATGGGGAGGTAATTT 59.504 45.455 11.00 0.00 0.00 1.82
8012 8712 9.897744 GAGATAATTGATGTGTTCTCAAAAACA 57.102 29.630 0.00 0.00 37.03 2.83
8020 8720 5.192927 TGTGTTCTCAAAAACAGTCTCCAT 58.807 37.500 0.00 0.00 39.69 3.41
8023 8723 6.483640 GTGTTCTCAAAAACAGTCTCCATAGT 59.516 38.462 0.00 0.00 39.69 2.12
8038 8742 1.127951 CATAGTGGTCGGCGACAAAAC 59.872 52.381 37.13 29.62 33.68 2.43
8049 8753 0.934496 CGACAAAACGAGGAGTTGCA 59.066 50.000 0.00 0.00 43.37 4.08
8050 8754 1.531149 CGACAAAACGAGGAGTTGCAT 59.469 47.619 0.00 0.00 43.37 3.96
8070 8774 2.743636 TCTTCTCACGGGTCATGTTC 57.256 50.000 0.00 0.00 0.00 3.18
8072 8776 0.669318 TTCTCACGGGTCATGTTCGC 60.669 55.000 0.00 0.00 0.00 4.70
8088 8792 2.186903 GCCCCGCGAGATCTTGAA 59.813 61.111 14.59 0.00 0.00 2.69
8161 8868 1.753078 CGGGTCCATCTCCGTCTCA 60.753 63.158 0.00 0.00 41.23 3.27
8239 8946 8.974060 ACGTAATTGGATGGATTACTAATTGT 57.026 30.769 0.00 0.00 37.67 2.71
8321 9028 9.618890 TCTTCATTATCAGGGTTTATTCTCTTG 57.381 33.333 0.00 0.00 0.00 3.02
8348 9055 2.489938 ATTGTACTCACGTGCCCATT 57.510 45.000 11.67 0.00 0.00 3.16
8507 9219 4.162320 TCCCTCGTTCTGCTCATAATTCTT 59.838 41.667 0.00 0.00 0.00 2.52
8519 9231 7.164122 TGCTCATAATTCTTGAGACAACTTCT 58.836 34.615 17.99 0.00 42.63 2.85
8651 9363 3.008049 AGCTGAGTTGGTTTTATCCGTCT 59.992 43.478 0.00 0.00 0.00 4.18
8717 9430 0.179059 TTTTGCTGCTCGTCAGTCCA 60.179 50.000 0.00 0.00 44.66 4.02
8754 9470 1.474330 GTAGGTCCAATTTGGCCCAG 58.526 55.000 17.39 0.00 38.22 4.45
8755 9471 1.080638 TAGGTCCAATTTGGCCCAGT 58.919 50.000 17.39 0.62 38.22 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.131731 AGCTAAGAAAGAAACATGAAGAACAAC 58.868 33.333 0.00 0.00 0.00 3.32
152 153 0.319900 CGGTCAGCACTACAGCAACT 60.320 55.000 0.00 0.00 36.85 3.16
260 279 0.801872 CGTGGATGTTGCATTCGGAA 59.198 50.000 0.00 0.00 0.00 4.30
365 386 4.074970 CTCTTTATCAAGTGGTGTGCCTT 58.925 43.478 0.00 0.00 35.27 4.35
519 543 8.721478 GCACAATTAATGTATTCTCGATGGTAT 58.279 33.333 0.00 0.00 41.46 2.73
531 555 9.899661 TGTAGTTTCCTAGCACAATTAATGTAT 57.100 29.630 0.00 0.00 41.46 2.29
856 907 1.344763 GGCAGCTATCGAGGTATGGTT 59.655 52.381 0.00 0.00 0.00 3.67
860 911 2.495270 CTGATGGCAGCTATCGAGGTAT 59.505 50.000 13.61 0.00 34.95 2.73
872 923 0.818445 GAGTGATGGGCTGATGGCAG 60.818 60.000 0.00 0.00 45.13 4.85
1441 1505 9.672673 AGTGACAAATGAAGTAGCATAACTTAT 57.327 29.630 0.00 0.00 39.78 1.73
1442 1506 8.935844 CAGTGACAAATGAAGTAGCATAACTTA 58.064 33.333 0.00 0.00 39.78 2.24
1448 1512 7.175467 TCAAATCAGTGACAAATGAAGTAGCAT 59.825 33.333 0.00 0.00 0.00 3.79
1456 1520 8.631797 TGAAGAAATCAAATCAGTGACAAATGA 58.368 29.630 0.00 0.00 34.30 2.57
1488 1552 6.377327 TTCAATGGACTTGTTTGTCTTCTC 57.623 37.500 0.00 0.00 37.16 2.87
1581 1645 5.047021 GCTGCATATCCTTAGACCAGACATA 60.047 44.000 0.00 0.00 0.00 2.29
2281 2345 9.944376 GGATTACCTCTAGATAATGCAATAACA 57.056 33.333 10.91 0.00 31.48 2.41
2351 2415 0.902984 ACCTCTGCCACATACGGTCA 60.903 55.000 0.00 0.00 0.00 4.02
2482 2546 4.566278 CCATCCTTGAGTCATTCACTGGAA 60.566 45.833 0.00 0.00 40.14 3.53
2715 2779 1.355381 TGATGTTGCCACAAGGGAGAT 59.645 47.619 0.00 0.00 40.01 2.75
2761 2825 1.590238 GCATGTATATCTCCATCGCGC 59.410 52.381 0.00 0.00 0.00 6.86
2781 2845 0.379669 GATTCATTCACTGGCCGCAG 59.620 55.000 0.00 0.00 0.00 5.18
2803 2867 6.870965 GCATATACCATCTAAAGAGTCAGTGG 59.129 42.308 0.00 0.00 0.00 4.00
2804 2868 7.665690 AGCATATACCATCTAAAGAGTCAGTG 58.334 38.462 0.00 0.00 0.00 3.66
2805 2869 7.847711 AGCATATACCATCTAAAGAGTCAGT 57.152 36.000 0.00 0.00 0.00 3.41
2808 2872 9.959749 GCTATAGCATATACCATCTAAAGAGTC 57.040 37.037 20.01 0.00 41.59 3.36
2850 2914 5.833406 TGGTAGCATAAATGAATGGTGTG 57.167 39.130 0.00 0.00 38.05 3.82
2985 3049 5.906113 TTGGCGAATTCCAAAAGCTAATA 57.094 34.783 0.00 0.00 42.69 0.98
3076 3140 3.899052 AATGGCATTGACAAATCCTGG 57.101 42.857 12.82 0.00 0.00 4.45
3166 3235 9.959749 AGAAAGTTAATTTGCATTTTTCTACGA 57.040 25.926 0.00 0.00 30.28 3.43
3257 3326 2.357056 CGGCCAACCAACCCCATA 59.643 61.111 2.24 0.00 34.57 2.74
3273 3342 0.456221 ACTCCTATCACAAGGTCGCG 59.544 55.000 0.00 0.00 37.91 5.87
3275 3344 2.271800 GCAACTCCTATCACAAGGTCG 58.728 52.381 0.00 0.00 37.91 4.79
3354 3423 9.480053 CTTTTGTGAATTTAACATCACCTGAAT 57.520 29.630 14.20 0.00 44.16 2.57
3459 3528 5.284079 ACAAACAGTCATGCATTCTGAAAC 58.716 37.500 25.84 7.88 33.93 2.78
3504 3573 6.643770 CCAAATATAAGAGGCAATGCACAATC 59.356 38.462 7.79 0.00 0.00 2.67
3635 3704 6.070938 GGACTGTTGGGAGTATAACTACAGTT 60.071 42.308 12.27 0.00 43.22 3.16
3650 3719 4.192317 GCTGTTATTCTAGGACTGTTGGG 58.808 47.826 0.00 0.00 0.00 4.12
3931 4003 4.325028 TTCACGGACTAGCTACAAACAA 57.675 40.909 0.00 0.00 0.00 2.83
3956 4028 2.365293 TGTTCTACTCTGCAAGCACTCA 59.635 45.455 0.00 0.00 0.00 3.41
4077 4149 4.921470 TTAGAAATTCAGACGGAAAGCG 57.079 40.909 0.00 0.00 39.39 4.68
4106 4178 4.211125 TGTTTAAAATGGCCAGACTGACA 58.789 39.130 13.05 9.00 0.00 3.58
4178 4251 7.444183 ACTTTCGGATGATACTTGAAACTCAAA 59.556 33.333 0.00 0.00 35.73 2.69
4190 4263 6.663944 AGCAGTAAAACTTTCGGATGATAC 57.336 37.500 0.00 0.00 0.00 2.24
4313 4394 2.036346 GCTGGCACTTGACCAAGAAAAT 59.964 45.455 15.84 0.00 40.79 1.82
4339 4420 7.770897 GGAATACAGGAACACATACAGAGATTT 59.229 37.037 0.00 0.00 0.00 2.17
4343 4424 6.045318 CAGGAATACAGGAACACATACAGAG 58.955 44.000 0.00 0.00 0.00 3.35
4437 4520 0.249868 TTGCTCGACAAGTCCCTGTG 60.250 55.000 0.00 0.00 33.24 3.66
4438 4521 0.249911 GTTGCTCGACAAGTCCCTGT 60.250 55.000 1.43 0.00 39.50 4.00
4517 4600 5.009610 ACTCGAAACATGTGCAAACCTTAAT 59.990 36.000 0.00 0.00 0.00 1.40
4548 4631 9.591792 TCAGTAATTCAAAGAGATGATGTACAG 57.408 33.333 0.33 0.00 0.00 2.74
4635 4718 2.811855 TGACAACAGCAGCAAAACATG 58.188 42.857 0.00 0.00 0.00 3.21
4670 4753 5.607119 TTGCCTCTTTCGTCAAAATAGTC 57.393 39.130 0.00 0.00 0.00 2.59
4707 4790 4.085357 ACTGTCTTGAATACTGTTGGCA 57.915 40.909 0.00 0.00 0.00 4.92
4708 4791 6.743575 AATACTGTCTTGAATACTGTTGGC 57.256 37.500 0.00 0.00 32.23 4.52
4709 4792 8.017373 CACAAATACTGTCTTGAATACTGTTGG 58.983 37.037 8.93 0.00 35.47 3.77
4746 4829 9.086336 AGAAACACAATCACTGTAATTTGTTTG 57.914 29.630 15.39 1.24 36.10 2.93
4815 4898 4.628766 GTCGACCCTACAAAACAGAATACC 59.371 45.833 3.51 0.00 0.00 2.73
4839 4922 3.713826 TCCACAAAGACCTGGGTTATC 57.286 47.619 0.00 0.00 0.00 1.75
4850 4933 8.196771 GGATTGCATGTATTATTTCCACAAAGA 58.803 33.333 0.00 0.00 0.00 2.52
4932 5015 9.130312 CAGAACTAGTAGTGATACTGAAACAAC 57.870 37.037 2.90 0.00 0.00 3.32
4938 5021 5.590663 CAGCCAGAACTAGTAGTGATACTGA 59.409 44.000 19.37 0.00 0.00 3.41
4971 5054 7.488187 TCTTCTTTCTGTCTCAAATGACAAG 57.512 36.000 0.00 0.00 44.98 3.16
4982 5065 2.975489 TGGCCTCTTCTTCTTTCTGTCT 59.025 45.455 3.32 0.00 0.00 3.41
4990 5073 2.092699 GCATTACCTGGCCTCTTCTTCT 60.093 50.000 3.32 0.00 0.00 2.85
5013 5096 7.384115 TGCTACTGTTTATGAAGTACTGTCAAC 59.616 37.037 0.00 0.00 0.00 3.18
5041 5124 5.757886 TCAAGCAACTGAATTTCCTTAACG 58.242 37.500 0.00 0.00 0.00 3.18
5084 5167 9.675553 CATAAACATGAATCGTATTATAGCACG 57.324 33.333 0.00 2.66 39.48 5.34
5145 5228 2.656560 AAGTGAATCTCCGGTTCTCG 57.343 50.000 0.00 0.00 38.88 4.04
5370 5453 8.007405 AGCCTGCAATATGTATACGATATGTA 57.993 34.615 0.00 0.00 37.49 2.29
5373 5456 7.112452 TGAGCCTGCAATATGTATACGATAT 57.888 36.000 0.00 1.01 0.00 1.63
5399 5482 8.461249 AGCCTGCAATATGGATATGATAATTC 57.539 34.615 0.00 0.00 0.00 2.17
5445 5528 3.454447 TCAAGGAGACCAAGTTCTTGTGA 59.546 43.478 10.93 4.37 36.94 3.58
5472 5555 9.643693 CTTAAATGTTTCTTGTCCTTGCAATAT 57.356 29.630 0.00 0.00 0.00 1.28
5503 5586 5.386060 TCCTTCATCCATGTACTCGTAGAT 58.614 41.667 0.00 0.00 33.89 1.98
5530 5613 1.210967 ACCTCTGAGACGGTCCTCTAG 59.789 57.143 6.17 0.00 34.38 2.43
5574 5657 8.466026 CAAACTTAATTTTACACTACGCAACAC 58.534 33.333 0.00 0.00 0.00 3.32
5623 5706 6.702282 GCCTATTAGCTGAAATTTACTCGAGT 59.298 38.462 23.66 23.66 0.00 4.18
5664 5747 1.203523 CAGGGTTCTTCTCTCCGACAG 59.796 57.143 0.00 0.00 0.00 3.51
5665 5748 1.257743 CAGGGTTCTTCTCTCCGACA 58.742 55.000 0.00 0.00 0.00 4.35
5671 5754 2.551270 TGCATACCAGGGTTCTTCTCT 58.449 47.619 0.00 0.00 0.00 3.10
5672 5755 3.567478 ATGCATACCAGGGTTCTTCTC 57.433 47.619 0.00 0.00 0.00 2.87
5673 5756 3.624777 CAATGCATACCAGGGTTCTTCT 58.375 45.455 0.00 0.00 0.00 2.85
5674 5757 2.099756 GCAATGCATACCAGGGTTCTTC 59.900 50.000 0.00 0.00 0.00 2.87
5675 5758 2.102578 GCAATGCATACCAGGGTTCTT 58.897 47.619 0.00 0.00 0.00 2.52
5676 5759 1.285962 AGCAATGCATACCAGGGTTCT 59.714 47.619 8.35 0.00 0.00 3.01
5677 5760 1.767759 AGCAATGCATACCAGGGTTC 58.232 50.000 8.35 0.00 0.00 3.62
5678 5761 2.236489 AAGCAATGCATACCAGGGTT 57.764 45.000 8.35 0.00 0.00 4.11
5679 5762 3.290710 CTTAAGCAATGCATACCAGGGT 58.709 45.455 8.35 0.00 0.00 4.34
5680 5763 2.035066 GCTTAAGCAATGCATACCAGGG 59.965 50.000 22.59 0.00 41.59 4.45
5681 5764 2.954318 AGCTTAAGCAATGCATACCAGG 59.046 45.455 28.39 0.00 45.16 4.45
5682 5765 4.644103 AAGCTTAAGCAATGCATACCAG 57.356 40.909 28.39 0.00 45.16 4.00
5683 5766 4.036734 GCTAAGCTTAAGCAATGCATACCA 59.963 41.667 28.39 0.59 45.16 3.25
5684 5767 4.036734 TGCTAAGCTTAAGCAATGCATACC 59.963 41.667 28.39 7.77 46.57 2.73
5685 5768 5.173774 TGCTAAGCTTAAGCAATGCATAC 57.826 39.130 28.39 10.12 46.57 2.39
5694 5777 0.247854 GCTGCGTGCTAAGCTTAAGC 60.248 55.000 20.09 20.09 40.50 3.09
5695 5778 3.885777 GCTGCGTGCTAAGCTTAAG 57.114 52.632 7.74 0.00 38.95 1.85
5712 5795 0.939577 TCACTTGTTCGAGCGTCAGC 60.940 55.000 0.00 0.00 45.58 4.26
5713 5796 1.190323 GTTCACTTGTTCGAGCGTCAG 59.810 52.381 0.00 0.00 0.00 3.51
5714 5797 1.205657 GTTCACTTGTTCGAGCGTCA 58.794 50.000 0.00 0.00 0.00 4.35
5715 5798 1.205657 TGTTCACTTGTTCGAGCGTC 58.794 50.000 0.00 0.00 0.00 5.19
5716 5799 1.865865 ATGTTCACTTGTTCGAGCGT 58.134 45.000 0.00 0.00 0.00 5.07
5717 5800 2.032894 ACAATGTTCACTTGTTCGAGCG 60.033 45.455 0.00 0.00 33.10 5.03
5718 5801 3.609103 ACAATGTTCACTTGTTCGAGC 57.391 42.857 0.00 0.00 33.10 5.03
5719 5802 4.730042 CACAACAATGTTCACTTGTTCGAG 59.270 41.667 0.00 0.00 43.15 4.04
5720 5803 4.155099 ACACAACAATGTTCACTTGTTCGA 59.845 37.500 0.00 0.00 43.15 3.71
5721 5804 4.262743 CACACAACAATGTTCACTTGTTCG 59.737 41.667 0.00 0.00 43.15 3.95
5722 5805 5.286082 GTCACACAACAATGTTCACTTGTTC 59.714 40.000 0.00 0.00 43.15 3.18
5723 5806 5.048083 AGTCACACAACAATGTTCACTTGTT 60.048 36.000 0.00 0.00 45.23 2.83
5724 5807 4.458989 AGTCACACAACAATGTTCACTTGT 59.541 37.500 0.00 0.00 37.82 3.16
5725 5808 4.985413 AGTCACACAACAATGTTCACTTG 58.015 39.130 0.00 0.00 37.82 3.16
5726 5809 4.201812 CGAGTCACACAACAATGTTCACTT 60.202 41.667 0.00 0.00 37.82 3.16
5727 5810 3.309682 CGAGTCACACAACAATGTTCACT 59.690 43.478 0.00 0.00 37.82 3.41
5728 5811 3.308595 TCGAGTCACACAACAATGTTCAC 59.691 43.478 0.00 0.00 37.82 3.18
5729 5812 3.526534 TCGAGTCACACAACAATGTTCA 58.473 40.909 0.00 0.00 37.82 3.18
5730 5813 4.211164 TGATCGAGTCACACAACAATGTTC 59.789 41.667 0.00 0.00 37.82 3.18
5731 5814 4.126437 TGATCGAGTCACACAACAATGTT 58.874 39.130 0.00 0.00 37.82 2.71
5732 5815 3.727726 TGATCGAGTCACACAACAATGT 58.272 40.909 0.00 0.00 41.61 2.71
5733 5816 4.705492 CTTGATCGAGTCACACAACAATG 58.295 43.478 1.30 0.00 36.32 2.82
5734 5817 3.187227 GCTTGATCGAGTCACACAACAAT 59.813 43.478 11.71 0.00 36.32 2.71
5735 5818 2.543848 GCTTGATCGAGTCACACAACAA 59.456 45.455 11.71 0.00 36.32 2.83
5736 5819 2.135139 GCTTGATCGAGTCACACAACA 58.865 47.619 11.71 0.00 36.32 3.33
5737 5820 2.135139 TGCTTGATCGAGTCACACAAC 58.865 47.619 11.71 0.00 36.32 3.32
5738 5821 2.524569 TGCTTGATCGAGTCACACAA 57.475 45.000 11.71 0.00 36.32 3.33
5739 5822 2.524569 TTGCTTGATCGAGTCACACA 57.475 45.000 11.71 0.00 36.32 3.72
5740 5823 2.995939 TGATTGCTTGATCGAGTCACAC 59.004 45.455 11.71 7.21 36.32 3.82
5741 5824 3.317603 TGATTGCTTGATCGAGTCACA 57.682 42.857 11.71 4.87 36.32 3.58
5742 5825 3.928992 TCTTGATTGCTTGATCGAGTCAC 59.071 43.478 11.71 2.54 38.29 3.67
5743 5826 4.192429 TCTTGATTGCTTGATCGAGTCA 57.808 40.909 11.71 7.31 38.29 3.41
5744 5827 4.807834 TGATCTTGATTGCTTGATCGAGTC 59.192 41.667 11.71 4.86 38.29 3.36
5745 5828 4.569966 GTGATCTTGATTGCTTGATCGAGT 59.430 41.667 11.71 0.00 38.29 4.18
5746 5829 4.809958 AGTGATCTTGATTGCTTGATCGAG 59.190 41.667 5.50 5.50 38.40 4.04
5747 5830 4.569564 CAGTGATCTTGATTGCTTGATCGA 59.430 41.667 0.00 0.00 38.40 3.59
5748 5831 4.260661 CCAGTGATCTTGATTGCTTGATCG 60.261 45.833 0.00 0.00 38.40 3.69
5749 5832 4.497674 GCCAGTGATCTTGATTGCTTGATC 60.498 45.833 0.00 0.00 36.72 2.92
5750 5833 3.380637 GCCAGTGATCTTGATTGCTTGAT 59.619 43.478 0.00 0.00 0.00 2.57
5751 5834 2.751259 GCCAGTGATCTTGATTGCTTGA 59.249 45.455 0.00 0.00 0.00 3.02
5752 5835 2.477357 CGCCAGTGATCTTGATTGCTTG 60.477 50.000 0.00 0.00 0.00 4.01
5753 5836 1.741706 CGCCAGTGATCTTGATTGCTT 59.258 47.619 0.00 0.00 0.00 3.91
5754 5837 1.376543 CGCCAGTGATCTTGATTGCT 58.623 50.000 0.00 0.00 0.00 3.91
5755 5838 0.379669 CCGCCAGTGATCTTGATTGC 59.620 55.000 0.00 0.00 0.00 3.56
5756 5839 1.938577 CTCCGCCAGTGATCTTGATTG 59.061 52.381 0.00 0.00 0.00 2.67
5757 5840 1.745141 GCTCCGCCAGTGATCTTGATT 60.745 52.381 0.00 0.00 0.00 2.57
5758 5841 0.179062 GCTCCGCCAGTGATCTTGAT 60.179 55.000 0.00 0.00 0.00 2.57
5759 5842 1.219124 GCTCCGCCAGTGATCTTGA 59.781 57.895 0.00 0.00 0.00 3.02
5760 5843 0.392193 AAGCTCCGCCAGTGATCTTG 60.392 55.000 0.00 0.00 0.00 3.02
5761 5844 0.107945 GAAGCTCCGCCAGTGATCTT 60.108 55.000 0.00 0.00 0.00 2.40
5762 5845 1.260538 TGAAGCTCCGCCAGTGATCT 61.261 55.000 0.00 0.00 0.00 2.75
5763 5846 0.179062 ATGAAGCTCCGCCAGTGATC 60.179 55.000 0.00 0.00 0.00 2.92
5764 5847 0.254178 AATGAAGCTCCGCCAGTGAT 59.746 50.000 0.00 0.00 0.00 3.06
5765 5848 0.901827 TAATGAAGCTCCGCCAGTGA 59.098 50.000 0.00 0.00 0.00 3.41
5766 5849 1.600957 CATAATGAAGCTCCGCCAGTG 59.399 52.381 0.00 0.00 0.00 3.66
5767 5850 1.475751 CCATAATGAAGCTCCGCCAGT 60.476 52.381 0.00 0.00 0.00 4.00
5768 5851 1.233019 CCATAATGAAGCTCCGCCAG 58.767 55.000 0.00 0.00 0.00 4.85
5769 5852 0.819259 GCCATAATGAAGCTCCGCCA 60.819 55.000 0.00 0.00 0.00 5.69
5770 5853 1.518903 GGCCATAATGAAGCTCCGCC 61.519 60.000 0.00 0.00 0.00 6.13
5771 5854 0.819259 TGGCCATAATGAAGCTCCGC 60.819 55.000 0.00 0.00 0.00 5.54
5772 5855 1.233019 CTGGCCATAATGAAGCTCCG 58.767 55.000 5.51 0.00 0.00 4.63
5773 5856 0.957362 GCTGGCCATAATGAAGCTCC 59.043 55.000 5.51 0.00 0.00 4.70
5774 5857 1.607628 CTGCTGGCCATAATGAAGCTC 59.392 52.381 5.51 0.00 34.92 4.09
5775 5858 1.688772 CTGCTGGCCATAATGAAGCT 58.311 50.000 5.51 0.00 34.92 3.74
5776 5859 0.031721 GCTGCTGGCCATAATGAAGC 59.968 55.000 5.51 6.38 34.27 3.86
5797 5880 1.723288 TTTAGGTTTTGGCTTGGGGG 58.277 50.000 0.00 0.00 0.00 5.40
5798 5881 3.847671 TTTTTAGGTTTTGGCTTGGGG 57.152 42.857 0.00 0.00 0.00 4.96
5828 5911 9.802468 AGTCCCAACTTGAGCAACTGCTATTTA 62.802 40.741 3.73 0.00 41.99 1.40
5829 5912 9.802468 TAGTCCCAACTTGAGCAACTGCTATTT 62.802 40.741 3.73 0.00 43.50 1.40
5830 5913 7.734434 AGTCCCAACTTGAGCAACTGCTATT 62.734 44.000 3.73 0.00 41.99 1.73
5831 5914 6.333057 AGTCCCAACTTGAGCAACTGCTAT 62.333 45.833 3.73 0.00 41.99 2.97
5832 5915 5.080772 AGTCCCAACTTGAGCAACTGCTA 62.081 47.826 3.73 0.00 41.99 3.49
5833 5916 4.404959 AGTCCCAACTTGAGCAACTGCT 62.405 50.000 3.29 3.29 43.82 4.24
5834 5917 0.312102 GTCCCAACTTGAGCAACTGC 59.688 55.000 0.00 0.00 42.49 4.40
5835 5918 1.972872 AGTCCCAACTTGAGCAACTG 58.027 50.000 0.00 0.00 28.74 3.16
5836 5919 2.972713 TCTAGTCCCAACTTGAGCAACT 59.027 45.455 0.00 0.00 36.92 3.16
5837 5920 3.402628 TCTAGTCCCAACTTGAGCAAC 57.597 47.619 0.00 0.00 36.92 4.17
5838 5921 4.389374 CTTTCTAGTCCCAACTTGAGCAA 58.611 43.478 0.00 0.00 38.28 3.91
5839 5922 3.244561 CCTTTCTAGTCCCAACTTGAGCA 60.245 47.826 0.00 0.00 38.28 4.26
5840 5923 3.008049 TCCTTTCTAGTCCCAACTTGAGC 59.992 47.826 0.00 0.00 38.28 4.26
5841 5924 4.891992 TCCTTTCTAGTCCCAACTTGAG 57.108 45.455 0.00 0.00 38.28 3.02
5842 5925 5.640158 TTTCCTTTCTAGTCCCAACTTGA 57.360 39.130 0.00 0.00 36.92 3.02
5843 5926 6.901081 AATTTCCTTTCTAGTCCCAACTTG 57.099 37.500 0.00 0.00 36.92 3.16
5844 5927 7.914427 AAAATTTCCTTTCTAGTCCCAACTT 57.086 32.000 0.00 0.00 36.92 2.66
5845 5928 7.914427 AAAAATTTCCTTTCTAGTCCCAACT 57.086 32.000 0.00 0.00 39.66 3.16
5866 5949 2.617774 GGCCTGAAAAATGCAGCAAAAA 59.382 40.909 0.00 0.00 32.06 1.94
5867 5950 2.158784 AGGCCTGAAAAATGCAGCAAAA 60.159 40.909 3.11 0.00 32.06 2.44
5868 5951 1.417145 AGGCCTGAAAAATGCAGCAAA 59.583 42.857 3.11 0.00 32.06 3.68
5869 5952 1.050204 AGGCCTGAAAAATGCAGCAA 58.950 45.000 3.11 0.00 32.06 3.91
5870 5953 1.050204 AAGGCCTGAAAAATGCAGCA 58.950 45.000 5.69 0.00 32.06 4.41
5871 5954 3.192466 CATAAGGCCTGAAAAATGCAGC 58.808 45.455 5.69 0.00 32.06 5.25
5872 5955 4.460948 ACATAAGGCCTGAAAAATGCAG 57.539 40.909 5.69 0.00 0.00 4.41
5873 5956 4.888326 AACATAAGGCCTGAAAAATGCA 57.112 36.364 5.69 0.00 0.00 3.96
5874 5957 5.351458 CCTAACATAAGGCCTGAAAAATGC 58.649 41.667 5.69 0.00 0.00 3.56
5886 5969 1.956477 GCACATGGGCCTAACATAAGG 59.044 52.381 9.41 0.00 39.87 2.69
5887 5970 1.603802 CGCACATGGGCCTAACATAAG 59.396 52.381 15.85 0.00 0.00 1.73
5888 5971 1.674359 CGCACATGGGCCTAACATAA 58.326 50.000 15.85 0.00 0.00 1.90
5889 5972 0.817634 GCGCACATGGGCCTAACATA 60.818 55.000 15.85 0.00 46.68 2.29
5890 5973 2.120909 GCGCACATGGGCCTAACAT 61.121 57.895 15.85 0.00 46.68 2.71
5891 5974 2.749839 GCGCACATGGGCCTAACA 60.750 61.111 15.85 0.00 46.68 2.41
5899 5982 1.311651 TAATGGGTGTGCGCACATGG 61.312 55.000 42.22 0.00 46.95 3.66
5907 5990 1.644786 GACGCTGGTAATGGGTGTGC 61.645 60.000 0.00 0.00 0.00 4.57
5913 5996 0.108186 TGCTCTGACGCTGGTAATGG 60.108 55.000 0.00 0.00 0.00 3.16
5922 6005 0.528470 AGACCTAGTTGCTCTGACGC 59.472 55.000 0.00 0.00 0.00 5.19
5928 6011 0.176910 GCCAGGAGACCTAGTTGCTC 59.823 60.000 0.00 0.00 29.64 4.26
5963 6046 0.108138 GCGGTGTGCTAGACCAGAAT 60.108 55.000 0.00 0.00 41.73 2.40
6012 6126 0.930742 CTTCACTATCGTCGCCGCTC 60.931 60.000 0.00 0.00 0.00 5.03
6015 6129 0.591741 GACCTTCACTATCGTCGCCG 60.592 60.000 0.00 0.00 0.00 6.46
6021 6135 3.782046 ACCGATTTGACCTTCACTATCG 58.218 45.455 10.65 10.65 39.18 2.92
6047 6161 3.118075 GGGGAAAAGATCTAAGCTGCTCT 60.118 47.826 1.00 0.00 0.00 4.09
6189 6871 6.081872 AGTGCAGAAGAAAATCCTCAAAAG 57.918 37.500 0.00 0.00 0.00 2.27
6305 6987 1.732941 TATACCACCGCAACAAGCTG 58.267 50.000 0.00 0.00 42.61 4.24
6319 7001 8.847196 GGGGTGAAAGACAAGAAATTATATACC 58.153 37.037 0.00 0.00 0.00 2.73
6325 7007 5.321927 GAGGGGGTGAAAGACAAGAAATTA 58.678 41.667 0.00 0.00 0.00 1.40
6338 7020 4.364686 GGGAGGGGAGGGGGTGAA 62.365 72.222 0.00 0.00 0.00 3.18
6348 7030 3.638592 AATTTCACGCGGGGAGGGG 62.639 63.158 9.32 0.00 37.07 4.79
6350 7032 2.112815 GGAATTTCACGCGGGGAGG 61.113 63.158 9.32 0.00 0.00 4.30
6352 7034 0.108041 GTAGGAATTTCACGCGGGGA 60.108 55.000 9.32 0.00 0.00 4.81
6353 7035 0.107848 AGTAGGAATTTCACGCGGGG 60.108 55.000 9.32 0.00 0.00 5.73
6354 7036 1.734163 AAGTAGGAATTTCACGCGGG 58.266 50.000 12.47 6.51 0.00 6.13
6355 7037 2.284417 GCTAAGTAGGAATTTCACGCGG 59.716 50.000 12.47 0.00 0.00 6.46
6356 7038 3.187700 AGCTAAGTAGGAATTTCACGCG 58.812 45.455 3.53 3.53 0.00 6.01
6357 7039 3.556365 GGAGCTAAGTAGGAATTTCACGC 59.444 47.826 0.00 0.00 0.00 5.34
6358 7040 3.797256 CGGAGCTAAGTAGGAATTTCACG 59.203 47.826 0.00 0.00 0.00 4.35
6401 7083 2.359107 TGCTTGCCGGCTCTCAAG 60.359 61.111 29.70 22.81 41.79 3.02
6403 7085 2.395988 TTTCTGCTTGCCGGCTCTCA 62.396 55.000 29.70 19.85 0.00 3.27
6442 7124 6.591935 TCTGTATTGGTTATGGAAGCCTTAG 58.408 40.000 0.00 0.00 31.75 2.18
6493 7175 1.993370 GCACGTCTATTGTGTGTCTCC 59.007 52.381 0.00 0.00 39.53 3.71
6494 7176 1.993370 GGCACGTCTATTGTGTGTCTC 59.007 52.381 0.00 0.00 39.53 3.36
6495 7177 1.343142 TGGCACGTCTATTGTGTGTCT 59.657 47.619 7.89 0.00 38.94 3.41
6498 7180 1.726791 GACTGGCACGTCTATTGTGTG 59.273 52.381 9.05 0.00 39.53 3.82
6564 7253 0.028902 GAAGTTGGTGTGGAACGTGC 59.971 55.000 0.00 0.00 42.39 5.34
6568 7257 4.204799 ACCTTAAGAAGTTGGTGTGGAAC 58.795 43.478 3.36 0.00 37.35 3.62
6577 7266 2.157085 GCCGAACGACCTTAAGAAGTTG 59.843 50.000 3.36 0.84 0.00 3.16
6578 7267 2.224113 TGCCGAACGACCTTAAGAAGTT 60.224 45.455 3.36 6.94 0.00 2.66
6606 7295 1.011333 CGTTCAGGTGTTCCGTTGTT 58.989 50.000 0.00 0.00 39.05 2.83
6635 7324 0.678048 GGTCCCATTGCAGTCTGACC 60.678 60.000 3.32 9.93 35.91 4.02
6770 7459 4.665897 GCTTTTCAGCGAACTAAGTTACCG 60.666 45.833 0.00 0.00 35.91 4.02
6913 7602 1.884235 GGTTCTTGACCTGTGGACAG 58.116 55.000 0.00 0.00 45.55 3.51
6931 7620 1.818555 GCTGCAGCCAATTAAGGGG 59.181 57.895 28.76 0.00 34.31 4.79
6933 7622 1.226773 GCGCTGCAGCCAATTAAGG 60.227 57.895 32.07 16.61 37.91 2.69
7056 7746 7.818446 GTGCATAGATGATCTATCACAACTCAT 59.182 37.037 24.21 2.28 37.58 2.90
7099 7789 6.294473 ACTCCAGTCCTATAAGAATTGCATG 58.706 40.000 0.00 0.00 0.00 4.06
7128 7818 1.444895 CGGGCTGCAAGATTTGTGC 60.445 57.895 0.50 0.00 42.55 4.57
7244 7934 5.048083 GTGGTCATGTGTGTTACCATTTCAT 60.048 40.000 5.12 0.00 43.53 2.57
7493 8184 7.904558 AGTGATATTATTCCTCTCTGTGTCA 57.095 36.000 0.00 0.00 0.00 3.58
7560 8251 3.085533 CTCTTATCCTCGGGTCGATCAT 58.914 50.000 0.00 0.00 34.61 2.45
7619 8310 0.321919 GAGTGCATTGGAGTGCCAGA 60.322 55.000 0.00 0.00 46.91 3.86
7706 8397 3.587933 GATCGCGGCGAGGTCTCT 61.588 66.667 29.64 12.54 39.91 3.10
7716 8407 2.969238 GCACCTCATGGATCGCGG 60.969 66.667 6.13 0.00 37.04 6.46
7803 8494 0.179215 CGCGCTGATGTTTCTCCAAC 60.179 55.000 5.56 0.00 35.71 3.77
7843 8534 6.615088 CAACTCAACTAATGATCCAAAGTGG 58.385 40.000 0.00 0.00 37.44 4.00
7844 8535 6.088824 GCAACTCAACTAATGATCCAAAGTG 58.911 40.000 0.00 0.00 37.44 3.16
7868 8559 4.275689 TCCAAAGCCATATAGTGCAAATCG 59.724 41.667 0.00 0.00 0.00 3.34
7888 8587 4.609301 AGCAATATTGGCTTAAACCTCCA 58.391 39.130 17.02 0.00 38.81 3.86
7890 8589 5.835113 TGAGCAATATTGGCTTAAACCTC 57.165 39.130 17.02 11.75 42.78 3.85
7891 8590 9.236006 CTATATGAGCAATATTGGCTTAAACCT 57.764 33.333 17.02 2.89 42.78 3.50
7893 8592 9.231297 TCCTATATGAGCAATATTGGCTTAAAC 57.769 33.333 17.02 0.00 41.40 2.01
7894 8593 9.806448 TTCCTATATGAGCAATATTGGCTTAAA 57.194 29.630 17.02 5.74 41.40 1.52
7896 8595 9.806448 TTTTCCTATATGAGCAATATTGGCTTA 57.194 29.630 17.02 11.14 41.40 3.09
7897 8596 8.579863 GTTTTCCTATATGAGCAATATTGGCTT 58.420 33.333 17.02 4.06 41.40 4.35
7898 8597 7.725397 TGTTTTCCTATATGAGCAATATTGGCT 59.275 33.333 17.02 13.60 41.40 4.75
7899 8598 7.809806 GTGTTTTCCTATATGAGCAATATTGGC 59.190 37.037 17.02 9.27 41.40 4.52
7900 8599 9.071276 AGTGTTTTCCTATATGAGCAATATTGG 57.929 33.333 17.02 11.29 42.39 3.16
7908 8607 6.049149 TGTGCTAGTGTTTTCCTATATGAGC 58.951 40.000 0.00 0.00 0.00 4.26
7934 8633 4.341502 ATTGCAACGCACGGGCAC 62.342 61.111 11.77 0.00 38.71 5.01
7977 8676 6.634805 ACACATCAATTATCTCTCTCGTTGT 58.365 36.000 0.00 0.00 0.00 3.32
7980 8679 7.106439 AGAACACATCAATTATCTCTCTCGT 57.894 36.000 0.00 0.00 0.00 4.18
7983 8682 9.730705 TTTTGAGAACACATCAATTATCTCTCT 57.269 29.630 0.00 0.00 36.60 3.10
8012 8712 1.384989 CGCCGACCACTATGGAGACT 61.385 60.000 0.84 0.00 40.96 3.24
8020 8720 0.940519 CGTTTTGTCGCCGACCACTA 60.941 55.000 15.60 0.00 0.00 2.74
8023 8723 1.952133 CTCGTTTTGTCGCCGACCA 60.952 57.895 15.60 0.00 0.00 4.02
8038 8742 2.670414 GTGAGAAGAATGCAACTCCTCG 59.330 50.000 0.00 0.00 0.00 4.63
8049 8753 3.600388 GAACATGACCCGTGAGAAGAAT 58.400 45.455 0.00 0.00 0.00 2.40
8050 8754 2.609491 CGAACATGACCCGTGAGAAGAA 60.609 50.000 0.00 0.00 0.00 2.52
8072 8776 0.108138 ACTTTCAAGATCTCGCGGGG 60.108 55.000 5.94 0.00 0.00 5.73
8088 8792 1.303317 GCCGACCAACCCATCACTT 60.303 57.895 0.00 0.00 0.00 3.16
8151 8858 1.629353 ACCACTACTCTGAGACGGAGA 59.371 52.381 12.44 0.00 39.05 3.71
8161 8868 0.889306 GAGGACGCAACCACTACTCT 59.111 55.000 0.00 0.00 0.00 3.24
8293 9000 9.790344 AGAGAATAAACCCTGATAATGAAGATG 57.210 33.333 0.00 0.00 0.00 2.90
8295 9002 9.618890 CAAGAGAATAAACCCTGATAATGAAGA 57.381 33.333 0.00 0.00 0.00 2.87
8373 9080 8.615211 CACACTGCTAATAAAAGAGAATATGCA 58.385 33.333 0.00 0.00 0.00 3.96
8519 9231 9.877178 GAAATAAGAAGGTTGTGAGAGAATAGA 57.123 33.333 0.00 0.00 0.00 1.98
8520 9232 9.103861 GGAAATAAGAAGGTTGTGAGAGAATAG 57.896 37.037 0.00 0.00 0.00 1.73
8528 9240 5.935945 TGTCTGGAAATAAGAAGGTTGTGA 58.064 37.500 0.00 0.00 0.00 3.58
8651 9363 1.367346 TGGACCTTCCCTATTGTGCA 58.633 50.000 0.00 0.00 35.03 4.57
8712 9425 6.365520 ACCATAGTTCTTTTTCTGTTGGACT 58.634 36.000 0.00 0.00 0.00 3.85
8717 9430 6.940867 GGACCTACCATAGTTCTTTTTCTGTT 59.059 38.462 0.00 0.00 38.79 3.16
8744 9460 1.281925 ATCCCTCGACTGGGCCAAAT 61.282 55.000 8.04 0.00 46.67 2.32
8783 9499 0.244450 TCCGTCCATTCCACACGTAC 59.756 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.