Multiple sequence alignment - TraesCS4D01G141800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G141800 chr4D 100.000 2612 0 0 1 2612 127144748 127147359 0 4824
1 TraesCS4D01G141800 chr4D 97.387 421 10 1 1 421 127122384 127122803 0 715
2 TraesCS4D01G141800 chr5A 95.216 2195 100 4 422 2612 635797485 635795292 0 3467
3 TraesCS4D01G141800 chr7D 95.166 2193 100 4 422 2611 497915433 497913244 0 3458
4 TraesCS4D01G141800 chr7D 95.249 421 19 1 1 421 276969634 276970053 0 665
5 TraesCS4D01G141800 chr2D 95.080 2195 103 3 422 2611 273014957 273017151 0 3450
6 TraesCS4D01G141800 chr2D 95.035 423 17 3 1 421 596679556 596679976 0 662
7 TraesCS4D01G141800 chr4B 94.619 2193 114 3 422 2611 312238160 312240351 0 3393
8 TraesCS4D01G141800 chr4B 94.480 2192 116 4 422 2610 182290701 182288512 0 3373
9 TraesCS4D01G141800 chr6A 94.540 2198 110 8 422 2611 371334527 371336722 0 3386
10 TraesCS4D01G141800 chr2A 94.531 2194 112 7 422 2612 742312254 742310066 0 3380
11 TraesCS4D01G141800 chr7A 93.400 2197 133 6 422 2611 224969313 224967122 0 3243
12 TraesCS4D01G141800 chr2B 93.382 2191 140 4 424 2610 30698390 30700579 0 3238
13 TraesCS4D01G141800 chr3D 95.024 422 19 2 1 421 138674957 138675377 0 662
14 TraesCS4D01G141800 chr3D 94.774 421 18 3 3 421 320112344 320111926 0 652
15 TraesCS4D01G141800 chr3D 94.762 420 19 2 3 421 313203516 313203933 0 651
16 TraesCS4D01G141800 chr3D 94.550 422 20 2 1 421 373080964 373081383 0 649
17 TraesCS4D01G141800 chr1D 95.012 421 17 3 3 421 176525462 176525880 0 658
18 TraesCS4D01G141800 chr1D 94.774 421 19 3 3 421 342097131 342096712 0 652


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G141800 chr4D 127144748 127147359 2611 False 4824 4824 100.000 1 2612 1 chr4D.!!$F2 2611
1 TraesCS4D01G141800 chr5A 635795292 635797485 2193 True 3467 3467 95.216 422 2612 1 chr5A.!!$R1 2190
2 TraesCS4D01G141800 chr7D 497913244 497915433 2189 True 3458 3458 95.166 422 2611 1 chr7D.!!$R1 2189
3 TraesCS4D01G141800 chr2D 273014957 273017151 2194 False 3450 3450 95.080 422 2611 1 chr2D.!!$F1 2189
4 TraesCS4D01G141800 chr4B 312238160 312240351 2191 False 3393 3393 94.619 422 2611 1 chr4B.!!$F1 2189
5 TraesCS4D01G141800 chr4B 182288512 182290701 2189 True 3373 3373 94.480 422 2610 1 chr4B.!!$R1 2188
6 TraesCS4D01G141800 chr6A 371334527 371336722 2195 False 3386 3386 94.540 422 2611 1 chr6A.!!$F1 2189
7 TraesCS4D01G141800 chr2A 742310066 742312254 2188 True 3380 3380 94.531 422 2612 1 chr2A.!!$R1 2190
8 TraesCS4D01G141800 chr7A 224967122 224969313 2191 True 3243 3243 93.400 422 2611 1 chr7A.!!$R1 2189
9 TraesCS4D01G141800 chr2B 30698390 30700579 2189 False 3238 3238 93.382 424 2610 1 chr2B.!!$F1 2186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.030101 CACAAACGGACATTGCGGTT 59.970 50.0 0.0 0.0 43.32 4.44 F
241 242 0.034477 AACGGGGAAAATGCTCGGAT 60.034 50.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1157 0.110486 ACAAACTGCCCGATCAAGGT 59.89 50.000 0.00 0.0 0.0 3.50 R
2099 2110 1.490490 AGCTGATCGGCCTAAATTGGA 59.51 47.619 23.02 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.450028 GTTTTTGCTGCCCACACAA 57.550 47.368 0.00 0.00 0.00 3.33
19 20 1.731720 GTTTTTGCTGCCCACACAAA 58.268 45.000 0.00 0.00 0.00 2.83
20 21 1.396648 GTTTTTGCTGCCCACACAAAC 59.603 47.619 0.00 0.00 33.29 2.93
21 22 0.459237 TTTTGCTGCCCACACAAACG 60.459 50.000 0.00 0.00 33.29 3.60
22 23 2.290122 TTTGCTGCCCACACAAACGG 62.290 55.000 0.00 0.00 0.00 4.44
23 24 2.904866 GCTGCCCACACAAACGGA 60.905 61.111 0.00 0.00 0.00 4.69
24 25 3.030652 CTGCCCACACAAACGGAC 58.969 61.111 0.00 0.00 0.00 4.79
25 26 1.821759 CTGCCCACACAAACGGACA 60.822 57.895 0.00 0.00 0.00 4.02
26 27 1.152860 TGCCCACACAAACGGACAT 60.153 52.632 0.00 0.00 0.00 3.06
27 28 0.753479 TGCCCACACAAACGGACATT 60.753 50.000 0.00 0.00 0.00 2.71
28 29 0.318614 GCCCACACAAACGGACATTG 60.319 55.000 0.00 0.00 0.00 2.82
29 30 0.318614 CCCACACAAACGGACATTGC 60.319 55.000 0.00 0.00 0.00 3.56
30 31 0.660005 CCACACAAACGGACATTGCG 60.660 55.000 0.00 0.00 37.19 4.85
31 32 0.660005 CACACAAACGGACATTGCGG 60.660 55.000 0.00 0.00 34.75 5.69
32 33 1.098712 ACACAAACGGACATTGCGGT 61.099 50.000 0.00 0.00 34.75 5.68
33 34 0.030101 CACAAACGGACATTGCGGTT 59.970 50.000 0.00 0.00 43.32 4.44
34 35 1.264557 CACAAACGGACATTGCGGTTA 59.735 47.619 0.00 0.00 39.66 2.85
35 36 1.264826 ACAAACGGACATTGCGGTTAC 59.735 47.619 0.00 0.00 39.66 2.50
36 37 0.876399 AAACGGACATTGCGGTTACC 59.124 50.000 0.00 0.00 39.95 2.85
37 38 0.956902 AACGGACATTGCGGTTACCC 60.957 55.000 0.00 0.00 34.75 3.69
60 61 4.847633 GGTTAACCGTTGGAGTAACAAAC 58.152 43.478 9.34 0.00 39.30 2.93
61 62 4.335037 GGTTAACCGTTGGAGTAACAAACA 59.665 41.667 9.34 0.00 39.30 2.83
62 63 5.163673 GGTTAACCGTTGGAGTAACAAACAA 60.164 40.000 9.34 0.00 39.30 2.83
63 64 4.359971 AACCGTTGGAGTAACAAACAAC 57.640 40.909 0.00 0.00 39.30 3.32
64 65 2.684374 ACCGTTGGAGTAACAAACAACC 59.316 45.455 0.00 0.00 39.89 3.77
65 66 2.946990 CCGTTGGAGTAACAAACAACCT 59.053 45.455 0.00 0.00 39.89 3.50
66 67 3.002965 CCGTTGGAGTAACAAACAACCTC 59.997 47.826 0.00 0.00 39.89 3.85
67 68 3.002965 CGTTGGAGTAACAAACAACCTCC 59.997 47.826 0.00 0.00 39.89 4.30
69 70 4.237976 TGGAGTAACAAACAACCTCCAA 57.762 40.909 4.29 0.00 46.46 3.53
70 71 4.601084 TGGAGTAACAAACAACCTCCAAA 58.399 39.130 4.29 0.00 46.46 3.28
71 72 5.205056 TGGAGTAACAAACAACCTCCAAAT 58.795 37.500 4.29 0.00 46.46 2.32
72 73 6.366340 TGGAGTAACAAACAACCTCCAAATA 58.634 36.000 4.29 0.00 46.46 1.40
73 74 6.488683 TGGAGTAACAAACAACCTCCAAATAG 59.511 38.462 4.29 0.00 46.46 1.73
74 75 6.713450 GGAGTAACAAACAACCTCCAAATAGA 59.287 38.462 0.00 0.00 41.12 1.98
75 76 7.229907 GGAGTAACAAACAACCTCCAAATAGAA 59.770 37.037 0.00 0.00 41.12 2.10
76 77 7.937649 AGTAACAAACAACCTCCAAATAGAAC 58.062 34.615 0.00 0.00 0.00 3.01
77 78 5.432885 ACAAACAACCTCCAAATAGAACG 57.567 39.130 0.00 0.00 0.00 3.95
78 79 5.127491 ACAAACAACCTCCAAATAGAACGA 58.873 37.500 0.00 0.00 0.00 3.85
79 80 5.591067 ACAAACAACCTCCAAATAGAACGAA 59.409 36.000 0.00 0.00 0.00 3.85
80 81 6.095720 ACAAACAACCTCCAAATAGAACGAAA 59.904 34.615 0.00 0.00 0.00 3.46
81 82 5.684550 ACAACCTCCAAATAGAACGAAAC 57.315 39.130 0.00 0.00 0.00 2.78
82 83 5.374071 ACAACCTCCAAATAGAACGAAACT 58.626 37.500 0.00 0.00 0.00 2.66
83 84 5.826208 ACAACCTCCAAATAGAACGAAACTT 59.174 36.000 0.00 0.00 0.00 2.66
84 85 5.941948 ACCTCCAAATAGAACGAAACTTG 57.058 39.130 0.00 0.00 0.00 3.16
85 86 5.617252 ACCTCCAAATAGAACGAAACTTGA 58.383 37.500 0.00 0.00 0.00 3.02
86 87 5.469084 ACCTCCAAATAGAACGAAACTTGAC 59.531 40.000 0.00 0.00 0.00 3.18
87 88 5.106673 CCTCCAAATAGAACGAAACTTGACC 60.107 44.000 0.00 0.00 0.00 4.02
88 89 4.449743 TCCAAATAGAACGAAACTTGACCG 59.550 41.667 0.00 0.00 0.00 4.79
89 90 4.449743 CCAAATAGAACGAAACTTGACCGA 59.550 41.667 0.00 0.00 0.00 4.69
90 91 5.121768 CCAAATAGAACGAAACTTGACCGAT 59.878 40.000 0.00 0.00 0.00 4.18
91 92 5.779806 AATAGAACGAAACTTGACCGATG 57.220 39.130 0.00 0.00 0.00 3.84
92 93 2.413837 AGAACGAAACTTGACCGATGG 58.586 47.619 0.00 0.00 0.00 3.51
93 94 0.872388 AACGAAACTTGACCGATGGC 59.128 50.000 0.00 0.00 0.00 4.40
94 95 0.953960 ACGAAACTTGACCGATGGCC 60.954 55.000 0.00 0.00 0.00 5.36
95 96 0.673644 CGAAACTTGACCGATGGCCT 60.674 55.000 3.32 0.00 0.00 5.19
96 97 1.404986 CGAAACTTGACCGATGGCCTA 60.405 52.381 3.32 0.00 0.00 3.93
97 98 2.007608 GAAACTTGACCGATGGCCTAC 58.992 52.381 3.32 0.00 0.00 3.18
98 99 0.252197 AACTTGACCGATGGCCTACC 59.748 55.000 3.32 0.00 0.00 3.18
99 100 1.227263 CTTGACCGATGGCCTACCG 60.227 63.158 3.32 4.54 39.70 4.02
103 104 4.235762 CCGATGGCCTACCGGTGG 62.236 72.222 19.93 15.68 39.70 4.61
104 105 3.467226 CGATGGCCTACCGGTGGT 61.467 66.667 19.93 0.00 39.70 4.16
105 106 2.129146 CGATGGCCTACCGGTGGTA 61.129 63.158 19.93 10.44 39.70 3.25
106 107 1.469335 CGATGGCCTACCGGTGGTAT 61.469 60.000 19.93 14.40 37.56 2.73
107 108 1.636148 GATGGCCTACCGGTGGTATA 58.364 55.000 19.93 2.20 37.56 1.47
108 109 1.274447 GATGGCCTACCGGTGGTATAC 59.726 57.143 19.93 4.39 37.56 1.47
109 110 0.760189 TGGCCTACCGGTGGTATACC 60.760 60.000 19.93 15.50 46.56 2.73
127 128 4.181051 AAGGCCACTTGACAAGCC 57.819 55.556 15.24 11.61 46.13 4.35
129 130 3.673599 GGCCACTTGACAAGCCTC 58.326 61.111 15.24 4.13 42.34 4.70
130 131 2.328099 GGCCACTTGACAAGCCTCG 61.328 63.158 15.24 1.76 42.34 4.63
131 132 1.301716 GCCACTTGACAAGCCTCGA 60.302 57.895 15.24 0.00 0.00 4.04
132 133 0.674895 GCCACTTGACAAGCCTCGAT 60.675 55.000 15.24 0.00 0.00 3.59
133 134 1.363744 CCACTTGACAAGCCTCGATC 58.636 55.000 15.24 0.00 0.00 3.69
134 135 1.363744 CACTTGACAAGCCTCGATCC 58.636 55.000 15.24 0.00 0.00 3.36
135 136 0.976641 ACTTGACAAGCCTCGATCCA 59.023 50.000 15.24 0.00 0.00 3.41
136 137 1.556911 ACTTGACAAGCCTCGATCCAT 59.443 47.619 15.24 0.00 0.00 3.41
137 138 2.026822 ACTTGACAAGCCTCGATCCATT 60.027 45.455 15.24 0.00 0.00 3.16
138 139 2.315925 TGACAAGCCTCGATCCATTC 57.684 50.000 0.00 0.00 0.00 2.67
139 140 1.134401 TGACAAGCCTCGATCCATTCC 60.134 52.381 0.00 0.00 0.00 3.01
140 141 0.179073 ACAAGCCTCGATCCATTCCG 60.179 55.000 0.00 0.00 0.00 4.30
141 142 0.104855 CAAGCCTCGATCCATTCCGA 59.895 55.000 0.00 0.00 0.00 4.55
146 147 3.938653 TCGATCCATTCCGAGAACG 57.061 52.632 0.00 0.00 39.43 3.95
147 148 1.100510 TCGATCCATTCCGAGAACGT 58.899 50.000 0.00 0.00 37.88 3.99
148 149 1.475280 TCGATCCATTCCGAGAACGTT 59.525 47.619 0.00 0.00 37.88 3.99
149 150 2.094390 TCGATCCATTCCGAGAACGTTT 60.094 45.455 0.46 0.00 37.88 3.60
150 151 2.029244 CGATCCATTCCGAGAACGTTTG 59.971 50.000 0.46 0.00 37.88 2.93
151 152 2.823924 TCCATTCCGAGAACGTTTGA 57.176 45.000 0.46 0.00 37.88 2.69
152 153 2.409975 TCCATTCCGAGAACGTTTGAC 58.590 47.619 0.46 0.00 37.88 3.18
153 154 2.139917 CCATTCCGAGAACGTTTGACA 58.860 47.619 0.46 0.00 37.88 3.58
154 155 2.096417 CCATTCCGAGAACGTTTGACAC 60.096 50.000 0.46 0.00 37.88 3.67
155 156 1.574134 TTCCGAGAACGTTTGACACC 58.426 50.000 0.46 0.00 37.88 4.16
156 157 0.249573 TCCGAGAACGTTTGACACCC 60.250 55.000 0.46 0.00 37.88 4.61
157 158 1.554042 CCGAGAACGTTTGACACCCG 61.554 60.000 0.46 0.00 37.88 5.28
158 159 1.568025 GAGAACGTTTGACACCCGC 59.432 57.895 0.46 0.00 0.00 6.13
159 160 0.878961 GAGAACGTTTGACACCCGCT 60.879 55.000 0.46 0.00 0.00 5.52
160 161 0.878961 AGAACGTTTGACACCCGCTC 60.879 55.000 0.46 0.00 0.00 5.03
161 162 1.153329 AACGTTTGACACCCGCTCA 60.153 52.632 0.00 0.00 0.00 4.26
162 163 1.433837 AACGTTTGACACCCGCTCAC 61.434 55.000 0.00 0.00 0.00 3.51
163 164 1.885388 CGTTTGACACCCGCTCACA 60.885 57.895 0.00 0.00 0.00 3.58
164 165 1.433053 CGTTTGACACCCGCTCACAA 61.433 55.000 0.00 0.00 0.00 3.33
165 166 0.736053 GTTTGACACCCGCTCACAAA 59.264 50.000 0.00 0.00 0.00 2.83
166 167 1.133407 GTTTGACACCCGCTCACAAAA 59.867 47.619 0.00 0.00 33.40 2.44
167 168 1.021202 TTGACACCCGCTCACAAAAG 58.979 50.000 0.00 0.00 0.00 2.27
168 169 0.179234 TGACACCCGCTCACAAAAGA 59.821 50.000 0.00 0.00 0.00 2.52
169 170 1.305201 GACACCCGCTCACAAAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
170 171 1.673920 GACACCCGCTCACAAAAGAAA 59.326 47.619 0.00 0.00 0.00 2.52
171 172 2.096248 ACACCCGCTCACAAAAGAAAA 58.904 42.857 0.00 0.00 0.00 2.29
172 173 2.494073 ACACCCGCTCACAAAAGAAAAA 59.506 40.909 0.00 0.00 0.00 1.94
173 174 2.857748 CACCCGCTCACAAAAGAAAAAC 59.142 45.455 0.00 0.00 0.00 2.43
174 175 2.494073 ACCCGCTCACAAAAGAAAAACA 59.506 40.909 0.00 0.00 0.00 2.83
175 176 3.056465 ACCCGCTCACAAAAGAAAAACAA 60.056 39.130 0.00 0.00 0.00 2.83
176 177 3.551485 CCCGCTCACAAAAGAAAAACAAG 59.449 43.478 0.00 0.00 0.00 3.16
177 178 4.420168 CCGCTCACAAAAGAAAAACAAGA 58.580 39.130 0.00 0.00 0.00 3.02
178 179 4.500477 CCGCTCACAAAAGAAAAACAAGAG 59.500 41.667 0.00 0.00 0.00 2.85
179 180 4.500477 CGCTCACAAAAGAAAAACAAGAGG 59.500 41.667 0.00 0.00 0.00 3.69
180 181 4.805719 GCTCACAAAAGAAAAACAAGAGGG 59.194 41.667 0.00 0.00 0.00 4.30
181 182 5.337578 TCACAAAAGAAAAACAAGAGGGG 57.662 39.130 0.00 0.00 0.00 4.79
182 183 4.775253 TCACAAAAGAAAAACAAGAGGGGT 59.225 37.500 0.00 0.00 0.00 4.95
183 184 4.869861 CACAAAAGAAAAACAAGAGGGGTG 59.130 41.667 0.00 0.00 0.00 4.61
184 185 3.819564 AAAGAAAAACAAGAGGGGTGC 57.180 42.857 0.00 0.00 0.00 5.01
185 186 1.318576 AGAAAAACAAGAGGGGTGCG 58.681 50.000 0.00 0.00 0.00 5.34
186 187 0.318699 GAAAAACAAGAGGGGTGCGC 60.319 55.000 0.00 0.00 0.00 6.09
187 188 1.744320 AAAAACAAGAGGGGTGCGCC 61.744 55.000 8.12 8.12 0.00 6.53
204 205 3.527641 CGGAGGAGGTAGGAGTGC 58.472 66.667 0.00 0.00 0.00 4.40
205 206 2.128507 CGGAGGAGGTAGGAGTGCC 61.129 68.421 0.00 0.00 0.00 5.01
206 207 2.128507 GGAGGAGGTAGGAGTGCCG 61.129 68.421 0.00 0.00 39.96 5.69
207 208 2.042843 AGGAGGTAGGAGTGCCGG 60.043 66.667 0.00 0.00 39.96 6.13
208 209 2.043248 GGAGGTAGGAGTGCCGGA 60.043 66.667 5.05 0.00 39.96 5.14
209 210 1.457831 GGAGGTAGGAGTGCCGGAT 60.458 63.158 5.05 0.00 39.96 4.18
210 211 1.049289 GGAGGTAGGAGTGCCGGATT 61.049 60.000 5.05 0.00 39.96 3.01
211 212 0.105039 GAGGTAGGAGTGCCGGATTG 59.895 60.000 5.05 0.00 39.96 2.67
212 213 1.523938 GGTAGGAGTGCCGGATTGC 60.524 63.158 5.05 0.00 39.96 3.56
213 214 1.220749 GTAGGAGTGCCGGATTGCA 59.779 57.895 5.05 0.00 39.96 4.08
214 215 0.392461 GTAGGAGTGCCGGATTGCAA 60.392 55.000 5.05 0.00 44.11 4.08
215 216 0.326595 TAGGAGTGCCGGATTGCAAA 59.673 50.000 5.05 0.00 44.11 3.68
216 217 0.539438 AGGAGTGCCGGATTGCAAAA 60.539 50.000 5.05 0.00 44.11 2.44
217 218 0.388520 GGAGTGCCGGATTGCAAAAC 60.389 55.000 5.05 0.26 44.11 2.43
218 219 0.729140 GAGTGCCGGATTGCAAAACG 60.729 55.000 5.05 16.38 44.11 3.60
223 224 3.855630 CGGATTGCAAAACGGACAA 57.144 47.368 15.75 0.00 0.00 3.18
224 225 1.404477 CGGATTGCAAAACGGACAAC 58.596 50.000 15.75 0.00 0.00 3.32
235 236 1.211709 CGGACAACGGGGAAAATGC 59.788 57.895 0.00 0.00 39.42 3.56
236 237 1.241315 CGGACAACGGGGAAAATGCT 61.241 55.000 0.00 0.00 39.42 3.79
237 238 0.526211 GGACAACGGGGAAAATGCTC 59.474 55.000 0.00 0.00 0.00 4.26
238 239 0.168128 GACAACGGGGAAAATGCTCG 59.832 55.000 0.00 0.00 0.00 5.03
239 240 1.241315 ACAACGGGGAAAATGCTCGG 61.241 55.000 0.00 0.00 0.00 4.63
240 241 0.958382 CAACGGGGAAAATGCTCGGA 60.958 55.000 0.00 0.00 0.00 4.55
241 242 0.034477 AACGGGGAAAATGCTCGGAT 60.034 50.000 0.00 0.00 0.00 4.18
242 243 0.748005 ACGGGGAAAATGCTCGGATG 60.748 55.000 0.00 0.00 0.00 3.51
243 244 1.735973 GGGGAAAATGCTCGGATGC 59.264 57.895 0.00 0.00 0.00 3.91
250 251 4.842292 TGCTCGGATGCATGAGAC 57.158 55.556 16.17 9.01 38.12 3.36
251 252 1.227060 TGCTCGGATGCATGAGACG 60.227 57.895 16.17 10.00 38.12 4.18
252 253 1.066422 GCTCGGATGCATGAGACGA 59.934 57.895 16.17 13.19 34.04 4.20
253 254 0.528466 GCTCGGATGCATGAGACGAA 60.528 55.000 16.17 1.71 34.04 3.85
254 255 1.203928 CTCGGATGCATGAGACGAAC 58.796 55.000 2.46 0.00 34.04 3.95
255 256 0.530288 TCGGATGCATGAGACGAACA 59.470 50.000 2.46 0.00 0.00 3.18
256 257 0.647410 CGGATGCATGAGACGAACAC 59.353 55.000 2.46 0.00 0.00 3.32
257 258 0.647410 GGATGCATGAGACGAACACG 59.353 55.000 2.46 0.00 0.00 4.49
258 259 1.350193 GATGCATGAGACGAACACGT 58.650 50.000 2.46 0.00 43.06 4.49
259 260 2.526077 GATGCATGAGACGAACACGTA 58.474 47.619 2.46 0.00 40.41 3.57
260 261 2.647529 TGCATGAGACGAACACGTAT 57.352 45.000 0.00 0.00 40.41 3.06
261 262 2.258755 TGCATGAGACGAACACGTATG 58.741 47.619 0.00 0.00 40.41 2.39
262 263 1.005975 GCATGAGACGAACACGTATGC 60.006 52.381 11.24 11.24 40.02 3.14
263 264 2.258755 CATGAGACGAACACGTATGCA 58.741 47.619 0.00 0.00 40.41 3.96
264 265 2.425578 TGAGACGAACACGTATGCAA 57.574 45.000 0.00 0.00 40.41 4.08
265 266 2.745102 TGAGACGAACACGTATGCAAA 58.255 42.857 0.00 0.00 40.41 3.68
266 267 3.322369 TGAGACGAACACGTATGCAAAT 58.678 40.909 0.00 0.00 40.41 2.32
267 268 3.122780 TGAGACGAACACGTATGCAAATG 59.877 43.478 0.00 0.00 40.41 2.32
268 269 2.159707 AGACGAACACGTATGCAAATGC 60.160 45.455 0.00 0.00 40.41 3.56
269 270 1.533299 ACGAACACGTATGCAAATGCA 59.467 42.857 10.94 10.94 43.07 3.96
270 271 2.031595 ACGAACACGTATGCAAATGCAA 60.032 40.909 12.67 0.00 42.35 4.08
271 272 3.365868 ACGAACACGTATGCAAATGCAAT 60.366 39.130 12.67 4.14 42.35 3.56
272 273 5.423937 ACGAACACGTATGCAAATGCAATG 61.424 41.667 12.67 10.66 42.35 2.82
281 282 3.317744 GCAAATGCAATGCACATGATG 57.682 42.857 21.43 12.69 43.04 3.07
282 283 2.933260 GCAAATGCAATGCACATGATGA 59.067 40.909 21.43 0.00 43.04 2.92
283 284 3.242284 GCAAATGCAATGCACATGATGAC 60.242 43.478 21.43 4.57 43.04 3.06
284 285 3.878160 AATGCAATGCACATGATGACA 57.122 38.095 11.23 0.00 43.04 3.58
285 286 4.400529 AATGCAATGCACATGATGACAT 57.599 36.364 11.23 0.00 43.04 3.06
300 301 6.985188 TGATGACATGATATGAGATGCATG 57.015 37.500 2.46 0.00 42.75 4.06
301 302 6.707290 TGATGACATGATATGAGATGCATGA 58.293 36.000 2.46 0.00 40.29 3.07
302 303 6.594159 TGATGACATGATATGAGATGCATGAC 59.406 38.462 2.46 0.00 40.29 3.06
303 304 5.860611 TGACATGATATGAGATGCATGACA 58.139 37.500 2.46 4.19 40.29 3.58
304 305 6.472887 TGACATGATATGAGATGCATGACAT 58.527 36.000 2.46 11.89 43.54 3.06
305 306 6.371548 TGACATGATATGAGATGCATGACATG 59.628 38.462 19.21 11.27 45.76 3.21
306 307 6.472887 ACATGATATGAGATGCATGACATGA 58.527 36.000 19.76 4.94 44.65 3.07
307 308 6.940298 ACATGATATGAGATGCATGACATGAA 59.060 34.615 19.76 9.39 44.65 2.57
308 309 6.796705 TGATATGAGATGCATGACATGAAC 57.203 37.500 19.76 8.86 39.84 3.18
309 310 6.292923 TGATATGAGATGCATGACATGAACA 58.707 36.000 19.76 8.78 39.84 3.18
310 311 6.768861 TGATATGAGATGCATGACATGAACAA 59.231 34.615 19.76 1.60 39.84 2.83
311 312 5.907866 ATGAGATGCATGACATGAACAAA 57.092 34.783 19.76 0.03 39.84 2.83
312 313 5.708877 TGAGATGCATGACATGAACAAAA 57.291 34.783 19.76 0.00 39.84 2.44
313 314 6.275494 TGAGATGCATGACATGAACAAAAT 57.725 33.333 19.76 2.33 39.84 1.82
314 315 6.096695 TGAGATGCATGACATGAACAAAATG 58.903 36.000 19.76 0.00 39.84 2.32
315 316 4.868171 AGATGCATGACATGAACAAAATGC 59.132 37.500 19.76 7.16 39.84 3.56
316 317 3.991367 TGCATGACATGAACAAAATGCA 58.009 36.364 19.76 9.56 45.83 3.96
317 318 4.377897 TGCATGACATGAACAAAATGCAA 58.622 34.783 19.76 6.17 45.25 4.08
318 319 4.814771 TGCATGACATGAACAAAATGCAAA 59.185 33.333 19.76 2.32 45.25 3.68
319 320 5.296035 TGCATGACATGAACAAAATGCAAAA 59.704 32.000 19.76 1.85 45.25 2.44
320 321 5.622041 GCATGACATGAACAAAATGCAAAAC 59.378 36.000 19.76 0.00 40.05 2.43
321 322 5.386810 TGACATGAACAAAATGCAAAACG 57.613 34.783 0.00 0.00 0.00 3.60
322 323 5.105063 TGACATGAACAAAATGCAAAACGA 58.895 33.333 0.00 0.00 0.00 3.85
323 324 5.578336 TGACATGAACAAAATGCAAAACGAA 59.422 32.000 0.00 0.00 0.00 3.85
324 325 6.091305 TGACATGAACAAAATGCAAAACGAAA 59.909 30.769 0.00 0.00 0.00 3.46
325 326 6.835914 ACATGAACAAAATGCAAAACGAAAA 58.164 28.000 0.00 0.00 0.00 2.29
326 327 7.301054 ACATGAACAAAATGCAAAACGAAAAA 58.699 26.923 0.00 0.00 0.00 1.94
327 328 7.270151 ACATGAACAAAATGCAAAACGAAAAAC 59.730 29.630 0.00 0.00 0.00 2.43
328 329 6.658831 TGAACAAAATGCAAAACGAAAAACA 58.341 28.000 0.00 0.00 0.00 2.83
329 330 7.132213 TGAACAAAATGCAAAACGAAAAACAA 58.868 26.923 0.00 0.00 0.00 2.83
330 331 7.643764 TGAACAAAATGCAAAACGAAAAACAAA 59.356 25.926 0.00 0.00 0.00 2.83
331 332 7.914537 ACAAAATGCAAAACGAAAAACAAAA 57.085 24.000 0.00 0.00 0.00 2.44
332 333 7.768812 ACAAAATGCAAAACGAAAAACAAAAC 58.231 26.923 0.00 0.00 0.00 2.43
333 334 6.919687 AAATGCAAAACGAAAAACAAAACC 57.080 29.167 0.00 0.00 0.00 3.27
334 335 4.406001 TGCAAAACGAAAAACAAAACCC 57.594 36.364 0.00 0.00 0.00 4.11
335 336 3.120649 TGCAAAACGAAAAACAAAACCCG 60.121 39.130 0.00 0.00 0.00 5.28
336 337 3.123116 GCAAAACGAAAAACAAAACCCGA 59.877 39.130 0.00 0.00 0.00 5.14
337 338 4.630050 CAAAACGAAAAACAAAACCCGAC 58.370 39.130 0.00 0.00 0.00 4.79
338 339 2.565210 ACGAAAAACAAAACCCGACC 57.435 45.000 0.00 0.00 0.00 4.79
339 340 1.817447 ACGAAAAACAAAACCCGACCA 59.183 42.857 0.00 0.00 0.00 4.02
340 341 2.186891 CGAAAAACAAAACCCGACCAC 58.813 47.619 0.00 0.00 0.00 4.16
341 342 2.186891 GAAAAACAAAACCCGACCACG 58.813 47.619 0.00 0.00 39.43 4.94
342 343 1.461559 AAAACAAAACCCGACCACGA 58.538 45.000 0.00 0.00 42.66 4.35
343 344 1.461559 AAACAAAACCCGACCACGAA 58.538 45.000 0.00 0.00 42.66 3.85
344 345 1.018910 AACAAAACCCGACCACGAAG 58.981 50.000 0.00 0.00 42.66 3.79
345 346 0.816421 ACAAAACCCGACCACGAAGG 60.816 55.000 0.00 0.00 42.66 3.46
352 353 2.150397 CCGACCACGAAGGGAATATC 57.850 55.000 0.00 0.00 43.89 1.63
353 354 1.411246 CCGACCACGAAGGGAATATCA 59.589 52.381 0.00 0.00 43.89 2.15
354 355 2.037251 CCGACCACGAAGGGAATATCAT 59.963 50.000 0.00 0.00 43.89 2.45
355 356 3.257375 CCGACCACGAAGGGAATATCATA 59.743 47.826 0.00 0.00 43.89 2.15
356 357 4.262292 CCGACCACGAAGGGAATATCATAA 60.262 45.833 0.00 0.00 43.89 1.90
357 358 4.684703 CGACCACGAAGGGAATATCATAAC 59.315 45.833 0.00 0.00 43.89 1.89
358 359 5.607477 GACCACGAAGGGAATATCATAACA 58.393 41.667 0.00 0.00 43.89 2.41
359 360 5.365619 ACCACGAAGGGAATATCATAACAC 58.634 41.667 0.00 0.00 43.89 3.32
360 361 5.104693 ACCACGAAGGGAATATCATAACACA 60.105 40.000 0.00 0.00 43.89 3.72
361 362 5.997746 CCACGAAGGGAATATCATAACACAT 59.002 40.000 0.00 0.00 0.00 3.21
362 363 6.073058 CCACGAAGGGAATATCATAACACATG 60.073 42.308 0.00 0.00 0.00 3.21
363 364 5.997746 ACGAAGGGAATATCATAACACATGG 59.002 40.000 0.00 0.00 0.00 3.66
364 365 5.106555 CGAAGGGAATATCATAACACATGGC 60.107 44.000 0.00 0.00 0.00 4.40
365 366 4.666512 AGGGAATATCATAACACATGGCC 58.333 43.478 0.00 0.00 0.00 5.36
366 367 4.106179 AGGGAATATCATAACACATGGCCA 59.894 41.667 8.56 8.56 0.00 5.36
367 368 4.832266 GGGAATATCATAACACATGGCCAA 59.168 41.667 10.96 0.00 0.00 4.52
368 369 5.304101 GGGAATATCATAACACATGGCCAAA 59.696 40.000 10.96 0.00 0.00 3.28
369 370 6.183360 GGGAATATCATAACACATGGCCAAAA 60.183 38.462 10.96 0.00 0.00 2.44
370 371 7.271511 GGAATATCATAACACATGGCCAAAAA 58.728 34.615 10.96 0.00 0.00 1.94
371 372 7.933033 GGAATATCATAACACATGGCCAAAAAT 59.067 33.333 10.96 0.00 0.00 1.82
372 373 8.665643 AATATCATAACACATGGCCAAAAATG 57.334 30.769 10.96 5.90 0.00 2.32
373 374 4.829968 TCATAACACATGGCCAAAAATGG 58.170 39.130 10.96 0.03 0.00 3.16
382 383 3.383026 CCAAAAATGGCACGAGTCG 57.617 52.632 11.85 11.85 0.00 4.18
383 384 0.109781 CCAAAAATGGCACGAGTCGG 60.110 55.000 18.30 7.06 0.00 4.79
384 385 0.871722 CAAAAATGGCACGAGTCGGA 59.128 50.000 18.30 0.00 0.00 4.55
385 386 1.265635 CAAAAATGGCACGAGTCGGAA 59.734 47.619 18.30 0.00 0.00 4.30
386 387 1.821216 AAAATGGCACGAGTCGGAAT 58.179 45.000 18.30 1.66 0.00 3.01
387 388 1.821216 AAATGGCACGAGTCGGAATT 58.179 45.000 18.30 7.82 0.00 2.17
388 389 2.684001 AATGGCACGAGTCGGAATTA 57.316 45.000 18.30 0.00 0.00 1.40
389 390 1.935933 ATGGCACGAGTCGGAATTAC 58.064 50.000 18.30 1.47 0.00 1.89
390 391 0.604073 TGGCACGAGTCGGAATTACA 59.396 50.000 18.30 4.15 0.00 2.41
391 392 1.001068 TGGCACGAGTCGGAATTACAA 59.999 47.619 18.30 0.00 0.00 2.41
392 393 2.070783 GGCACGAGTCGGAATTACAAA 58.929 47.619 18.30 0.00 0.00 2.83
393 394 2.676342 GGCACGAGTCGGAATTACAAAT 59.324 45.455 18.30 0.00 0.00 2.32
394 395 3.866910 GGCACGAGTCGGAATTACAAATA 59.133 43.478 18.30 0.00 0.00 1.40
395 396 4.510340 GGCACGAGTCGGAATTACAAATAT 59.490 41.667 18.30 0.00 0.00 1.28
396 397 5.432157 GCACGAGTCGGAATTACAAATATG 58.568 41.667 18.30 2.05 0.00 1.78
397 398 5.558273 GCACGAGTCGGAATTACAAATATGG 60.558 44.000 18.30 0.00 0.00 2.74
398 399 5.751509 CACGAGTCGGAATTACAAATATGGA 59.248 40.000 18.30 0.00 0.00 3.41
399 400 6.256975 CACGAGTCGGAATTACAAATATGGAA 59.743 38.462 18.30 0.00 32.75 3.53
400 401 6.819649 ACGAGTCGGAATTACAAATATGGAAA 59.180 34.615 18.30 0.00 31.72 3.13
401 402 7.011109 ACGAGTCGGAATTACAAATATGGAAAG 59.989 37.037 18.30 0.00 31.72 2.62
402 403 7.011109 CGAGTCGGAATTACAAATATGGAAAGT 59.989 37.037 4.10 0.00 31.72 2.66
403 404 8.575649 AGTCGGAATTACAAATATGGAAAGTT 57.424 30.769 0.00 0.00 31.72 2.66
404 405 9.675464 AGTCGGAATTACAAATATGGAAAGTTA 57.325 29.630 0.00 0.00 31.72 2.24
405 406 9.712359 GTCGGAATTACAAATATGGAAAGTTAC 57.288 33.333 0.00 0.00 31.72 2.50
406 407 9.451002 TCGGAATTACAAATATGGAAAGTTACA 57.549 29.630 0.00 0.00 31.72 2.41
411 412 6.693315 ACAAATATGGAAAGTTACATCCGG 57.307 37.500 0.00 0.00 38.63 5.14
412 413 5.592688 ACAAATATGGAAAGTTACATCCGGG 59.407 40.000 0.00 0.00 38.63 5.73
413 414 2.729028 ATGGAAAGTTACATCCGGGG 57.271 50.000 0.00 0.00 38.63 5.73
414 415 1.364269 TGGAAAGTTACATCCGGGGT 58.636 50.000 0.00 2.79 38.63 4.95
415 416 1.003812 TGGAAAGTTACATCCGGGGTG 59.996 52.381 5.55 5.55 38.63 4.61
416 417 1.003928 GGAAAGTTACATCCGGGGTGT 59.996 52.381 18.45 18.45 0.00 4.16
417 418 2.553685 GGAAAGTTACATCCGGGGTGTT 60.554 50.000 19.71 0.00 0.00 3.32
418 419 3.307621 GGAAAGTTACATCCGGGGTGTTA 60.308 47.826 19.71 6.65 0.00 2.41
419 420 3.339253 AAGTTACATCCGGGGTGTTAC 57.661 47.619 19.71 19.44 31.30 2.50
420 421 2.259012 AGTTACATCCGGGGTGTTACA 58.741 47.619 26.16 4.90 33.02 2.41
545 546 4.528531 GGCGAAGACAAAGATGAGATTC 57.471 45.455 0.00 0.00 31.66 2.52
672 674 0.107831 ACAGAAGCGTACAAGGGCAA 59.892 50.000 0.00 0.00 0.00 4.52
730 732 3.288484 AGCCGATGAGCTTCGTCA 58.712 55.556 7.03 0.00 41.41 4.35
746 748 5.667156 GCTTCGTCACGTATTAGGTTTTGAC 60.667 44.000 0.00 0.00 0.00 3.18
779 781 2.644798 AGTGGAAAGTGATGGTAAGGCT 59.355 45.455 0.00 0.00 0.00 4.58
880 883 8.233868 TGTTTTTATGTATGAGAATGTGGTTCG 58.766 33.333 0.00 0.00 41.84 3.95
917 920 3.681594 GCTTCTATGGTCACCCGAAATGA 60.682 47.826 0.00 0.00 0.00 2.57
926 929 4.261825 GGTCACCCGAAATGAAATGAACAA 60.262 41.667 0.00 0.00 0.00 2.83
991 995 0.321346 CATCCTTGGGTGGTTTTGGC 59.679 55.000 0.00 0.00 0.00 4.52
1119 1125 5.500222 AGATCTAGGCTATAAGGGGGACATA 59.500 44.000 0.00 0.00 0.00 2.29
1151 1157 0.530744 AGAGGCGAAATACGTGAGCA 59.469 50.000 0.00 0.00 44.60 4.26
1208 1214 0.039527 AAATTTCCACGAGCGGCAAC 60.040 50.000 1.45 0.00 0.00 4.17
1222 1228 4.202441 AGCGGCAACTATCAATGAAGAAT 58.798 39.130 1.45 0.00 0.00 2.40
1411 1420 1.053835 TGGACCCTCACTTGCTGACA 61.054 55.000 0.00 0.00 0.00 3.58
1413 1422 0.681733 GACCCTCACTTGCTGACAGA 59.318 55.000 6.65 0.00 0.00 3.41
1471 1480 1.003233 AGGAAACGCTAAAGGGACCAG 59.997 52.381 0.52 0.00 0.00 4.00
1567 1576 5.106712 TGTCGTCAGAAGGAAATTATTGTGC 60.107 40.000 0.00 0.00 0.00 4.57
1609 1618 7.001073 GGAGCAAGAGGAAATATTCTGGTTAT 58.999 38.462 0.00 0.00 0.00 1.89
1619 1628 9.847224 GGAAATATTCTGGTTATAAAGAGGACA 57.153 33.333 0.00 0.00 0.00 4.02
1927 1937 8.582657 TTTATTCGATATTGGGGACTTGAAAA 57.417 30.769 0.00 0.00 0.00 2.29
1981 1991 5.584913 TCTATAAAAGGTTTTGGCCCATGA 58.415 37.500 0.00 0.00 0.00 3.07
2060 2071 1.658994 GGTTGGAATGATACGGCGAA 58.341 50.000 16.62 0.00 0.00 4.70
2234 2249 6.430000 GCATTTGTACCGGGTAGATTGATAAT 59.570 38.462 7.25 0.00 0.00 1.28
2338 2353 4.588899 ACTTGATATGCACAAAGCCTACA 58.411 39.130 0.00 0.00 44.83 2.74
2406 2423 3.389925 TTTCGTCGTGAGTGGGTTAAT 57.610 42.857 0.00 0.00 0.00 1.40
2407 2424 2.357327 TCGTCGTGAGTGGGTTAATG 57.643 50.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.396648 GTTTGTGTGGGCAGCAAAAAC 59.603 47.619 9.48 9.48 37.04 2.43
1 2 1.731720 GTTTGTGTGGGCAGCAAAAA 58.268 45.000 0.00 0.00 34.47 1.94
2 3 0.459237 CGTTTGTGTGGGCAGCAAAA 60.459 50.000 0.00 0.00 34.47 2.44
3 4 1.140589 CGTTTGTGTGGGCAGCAAA 59.859 52.632 0.00 0.00 0.00 3.68
4 5 2.780094 CCGTTTGTGTGGGCAGCAA 61.780 57.895 0.00 0.00 0.00 3.91
5 6 3.215568 CCGTTTGTGTGGGCAGCA 61.216 61.111 0.00 0.00 0.00 4.41
6 7 2.904866 TCCGTTTGTGTGGGCAGC 60.905 61.111 0.00 0.00 0.00 5.25
7 8 1.172180 ATGTCCGTTTGTGTGGGCAG 61.172 55.000 0.00 0.00 44.30 4.85
8 9 0.753479 AATGTCCGTTTGTGTGGGCA 60.753 50.000 0.00 0.00 45.33 5.36
9 10 0.318614 CAATGTCCGTTTGTGTGGGC 60.319 55.000 0.00 0.00 0.00 5.36
10 11 0.318614 GCAATGTCCGTTTGTGTGGG 60.319 55.000 0.00 0.00 0.00 4.61
11 12 0.660005 CGCAATGTCCGTTTGTGTGG 60.660 55.000 0.00 0.00 31.55 4.17
12 13 0.660005 CCGCAATGTCCGTTTGTGTG 60.660 55.000 0.00 0.00 33.73 3.82
13 14 1.098712 ACCGCAATGTCCGTTTGTGT 61.099 50.000 0.00 0.00 33.73 3.72
14 15 0.030101 AACCGCAATGTCCGTTTGTG 59.970 50.000 0.00 0.00 35.00 3.33
15 16 1.264826 GTAACCGCAATGTCCGTTTGT 59.735 47.619 0.00 0.00 0.00 2.83
16 17 1.400500 GGTAACCGCAATGTCCGTTTG 60.400 52.381 0.00 0.00 0.00 2.93
17 18 0.876399 GGTAACCGCAATGTCCGTTT 59.124 50.000 0.00 0.00 0.00 3.60
18 19 2.547026 GGTAACCGCAATGTCCGTT 58.453 52.632 0.00 0.00 0.00 4.44
19 20 4.289312 GGTAACCGCAATGTCCGT 57.711 55.556 0.00 0.00 0.00 4.69
38 39 4.335037 TGTTTGTTACTCCAACGGTTAACC 59.665 41.667 15.13 15.13 40.26 2.85
39 40 5.482686 TGTTTGTTACTCCAACGGTTAAC 57.517 39.130 0.00 0.00 40.26 2.01
40 41 5.163673 GGTTGTTTGTTACTCCAACGGTTAA 60.164 40.000 0.00 0.00 40.26 2.01
41 42 4.335037 GGTTGTTTGTTACTCCAACGGTTA 59.665 41.667 0.00 0.00 40.26 2.85
42 43 3.129113 GGTTGTTTGTTACTCCAACGGTT 59.871 43.478 0.00 0.00 40.26 4.44
43 44 2.684374 GGTTGTTTGTTACTCCAACGGT 59.316 45.455 0.00 0.00 40.26 4.83
44 45 2.946990 AGGTTGTTTGTTACTCCAACGG 59.053 45.455 0.00 0.00 40.26 4.44
45 46 3.002965 GGAGGTTGTTTGTTACTCCAACG 59.997 47.826 0.00 0.00 45.45 4.10
46 47 4.563337 GGAGGTTGTTTGTTACTCCAAC 57.437 45.455 0.00 0.00 45.45 3.77
49 50 5.784578 ATTTGGAGGTTGTTTGTTACTCC 57.215 39.130 0.00 0.00 46.14 3.85
50 51 7.739498 TCTATTTGGAGGTTGTTTGTTACTC 57.261 36.000 0.00 0.00 0.00 2.59
51 52 7.255001 CGTTCTATTTGGAGGTTGTTTGTTACT 60.255 37.037 0.00 0.00 0.00 2.24
52 53 6.854381 CGTTCTATTTGGAGGTTGTTTGTTAC 59.146 38.462 0.00 0.00 0.00 2.50
53 54 6.766944 TCGTTCTATTTGGAGGTTGTTTGTTA 59.233 34.615 0.00 0.00 0.00 2.41
54 55 5.591067 TCGTTCTATTTGGAGGTTGTTTGTT 59.409 36.000 0.00 0.00 0.00 2.83
55 56 5.127491 TCGTTCTATTTGGAGGTTGTTTGT 58.873 37.500 0.00 0.00 0.00 2.83
56 57 5.682943 TCGTTCTATTTGGAGGTTGTTTG 57.317 39.130 0.00 0.00 0.00 2.93
57 58 6.320418 AGTTTCGTTCTATTTGGAGGTTGTTT 59.680 34.615 0.00 0.00 0.00 2.83
58 59 5.826208 AGTTTCGTTCTATTTGGAGGTTGTT 59.174 36.000 0.00 0.00 0.00 2.83
59 60 5.374071 AGTTTCGTTCTATTTGGAGGTTGT 58.626 37.500 0.00 0.00 0.00 3.32
60 61 5.941948 AGTTTCGTTCTATTTGGAGGTTG 57.058 39.130 0.00 0.00 0.00 3.77
61 62 6.017357 GTCAAGTTTCGTTCTATTTGGAGGTT 60.017 38.462 0.00 0.00 0.00 3.50
62 63 5.469084 GTCAAGTTTCGTTCTATTTGGAGGT 59.531 40.000 0.00 0.00 0.00 3.85
63 64 5.106673 GGTCAAGTTTCGTTCTATTTGGAGG 60.107 44.000 0.00 0.00 0.00 4.30
64 65 5.389516 CGGTCAAGTTTCGTTCTATTTGGAG 60.390 44.000 0.00 0.00 0.00 3.86
65 66 4.449743 CGGTCAAGTTTCGTTCTATTTGGA 59.550 41.667 0.00 0.00 0.00 3.53
66 67 4.449743 TCGGTCAAGTTTCGTTCTATTTGG 59.550 41.667 0.00 0.00 0.00 3.28
67 68 5.585500 TCGGTCAAGTTTCGTTCTATTTG 57.415 39.130 0.00 0.00 0.00 2.32
68 69 5.121768 CCATCGGTCAAGTTTCGTTCTATTT 59.878 40.000 0.00 0.00 0.00 1.40
69 70 4.630069 CCATCGGTCAAGTTTCGTTCTATT 59.370 41.667 0.00 0.00 0.00 1.73
70 71 4.181578 CCATCGGTCAAGTTTCGTTCTAT 58.818 43.478 0.00 0.00 0.00 1.98
71 72 3.581755 CCATCGGTCAAGTTTCGTTCTA 58.418 45.455 0.00 0.00 0.00 2.10
72 73 2.413837 CCATCGGTCAAGTTTCGTTCT 58.586 47.619 0.00 0.00 0.00 3.01
73 74 1.136057 GCCATCGGTCAAGTTTCGTTC 60.136 52.381 0.00 0.00 0.00 3.95
74 75 0.872388 GCCATCGGTCAAGTTTCGTT 59.128 50.000 0.00 0.00 0.00 3.85
75 76 0.953960 GGCCATCGGTCAAGTTTCGT 60.954 55.000 0.00 0.00 0.00 3.85
76 77 0.673644 AGGCCATCGGTCAAGTTTCG 60.674 55.000 5.01 0.00 0.00 3.46
77 78 2.007608 GTAGGCCATCGGTCAAGTTTC 58.992 52.381 5.01 0.00 0.00 2.78
78 79 1.339727 GGTAGGCCATCGGTCAAGTTT 60.340 52.381 5.01 0.00 34.09 2.66
79 80 0.252197 GGTAGGCCATCGGTCAAGTT 59.748 55.000 5.01 0.00 34.09 2.66
80 81 1.905512 GGTAGGCCATCGGTCAAGT 59.094 57.895 5.01 0.00 34.09 3.16
81 82 1.227263 CGGTAGGCCATCGGTCAAG 60.227 63.158 5.01 0.00 34.09 3.02
82 83 2.727392 CCGGTAGGCCATCGGTCAA 61.727 63.158 19.16 0.00 39.04 3.18
83 84 3.151710 CCGGTAGGCCATCGGTCA 61.152 66.667 19.16 0.00 39.04 4.02
87 88 1.469335 ATACCACCGGTAGGCCATCG 61.469 60.000 19.28 5.36 41.83 3.84
88 89 1.274447 GTATACCACCGGTAGGCCATC 59.726 57.143 19.28 0.00 41.83 3.51
89 90 1.345063 GTATACCACCGGTAGGCCAT 58.655 55.000 19.28 15.37 41.83 4.40
90 91 0.760189 GGTATACCACCGGTAGGCCA 60.760 60.000 17.44 10.44 41.83 5.36
91 92 2.052779 GGTATACCACCGGTAGGCC 58.947 63.158 17.44 10.84 41.83 5.19
101 102 2.026636 GTCAAGTGGCCTTGGTATACCA 60.027 50.000 21.05 21.05 46.65 3.25
102 103 2.026636 TGTCAAGTGGCCTTGGTATACC 60.027 50.000 15.50 15.50 46.65 2.73
103 104 3.343941 TGTCAAGTGGCCTTGGTATAC 57.656 47.619 3.32 0.00 46.65 1.47
104 105 3.872240 GCTTGTCAAGTGGCCTTGGTATA 60.872 47.826 14.03 0.00 46.65 1.47
105 106 2.795329 CTTGTCAAGTGGCCTTGGTAT 58.205 47.619 3.32 0.00 46.65 2.73
106 107 1.817740 GCTTGTCAAGTGGCCTTGGTA 60.818 52.381 14.03 0.00 46.65 3.25
107 108 1.109323 GCTTGTCAAGTGGCCTTGGT 61.109 55.000 14.03 0.00 46.65 3.67
108 109 1.662044 GCTTGTCAAGTGGCCTTGG 59.338 57.895 14.03 0.00 46.65 3.61
110 111 4.181051 GGCTTGTCAAGTGGCCTT 57.819 55.556 14.03 0.00 41.20 4.35
112 113 2.328099 CGAGGCTTGTCAAGTGGCC 61.328 63.158 14.03 9.99 44.38 5.36
113 114 0.674895 ATCGAGGCTTGTCAAGTGGC 60.675 55.000 14.03 2.53 0.00 5.01
114 115 1.363744 GATCGAGGCTTGTCAAGTGG 58.636 55.000 14.03 1.98 0.00 4.00
115 116 1.338105 TGGATCGAGGCTTGTCAAGTG 60.338 52.381 14.03 2.81 0.00 3.16
116 117 0.976641 TGGATCGAGGCTTGTCAAGT 59.023 50.000 14.03 0.00 0.00 3.16
117 118 2.322355 ATGGATCGAGGCTTGTCAAG 57.678 50.000 8.31 8.31 0.00 3.02
118 119 2.632377 GAATGGATCGAGGCTTGTCAA 58.368 47.619 0.77 0.00 0.00 3.18
119 120 1.134401 GGAATGGATCGAGGCTTGTCA 60.134 52.381 0.77 0.09 0.00 3.58
120 121 1.587547 GGAATGGATCGAGGCTTGTC 58.412 55.000 0.77 0.00 0.00 3.18
121 122 0.179073 CGGAATGGATCGAGGCTTGT 60.179 55.000 0.77 0.00 0.00 3.16
122 123 0.104855 TCGGAATGGATCGAGGCTTG 59.895 55.000 0.00 0.00 0.00 4.01
123 124 0.390860 CTCGGAATGGATCGAGGCTT 59.609 55.000 5.00 0.00 46.20 4.35
124 125 2.045280 CTCGGAATGGATCGAGGCT 58.955 57.895 5.00 0.00 46.20 4.58
125 126 4.663444 CTCGGAATGGATCGAGGC 57.337 61.111 5.00 0.00 46.20 4.70
128 129 1.100510 ACGTTCTCGGAATGGATCGA 58.899 50.000 9.64 0.00 41.85 3.59
129 130 1.922570 AACGTTCTCGGAATGGATCG 58.077 50.000 0.00 0.00 41.85 3.69
130 131 3.062234 GTCAAACGTTCTCGGAATGGATC 59.938 47.826 0.00 0.00 41.85 3.36
131 132 3.000727 GTCAAACGTTCTCGGAATGGAT 58.999 45.455 0.00 0.00 41.85 3.41
132 133 2.224090 TGTCAAACGTTCTCGGAATGGA 60.224 45.455 0.00 0.00 41.85 3.41
133 134 2.096417 GTGTCAAACGTTCTCGGAATGG 60.096 50.000 0.00 0.69 41.85 3.16
134 135 2.096417 GGTGTCAAACGTTCTCGGAATG 60.096 50.000 0.00 0.00 41.85 2.67
135 136 2.140717 GGTGTCAAACGTTCTCGGAAT 58.859 47.619 0.00 0.00 41.85 3.01
136 137 1.574134 GGTGTCAAACGTTCTCGGAA 58.426 50.000 0.00 0.00 41.85 4.30
137 138 0.249573 GGGTGTCAAACGTTCTCGGA 60.250 55.000 0.00 0.00 41.85 4.55
138 139 1.554042 CGGGTGTCAAACGTTCTCGG 61.554 60.000 0.00 0.00 41.85 4.63
139 140 1.850640 CGGGTGTCAAACGTTCTCG 59.149 57.895 0.00 0.00 43.34 4.04
140 141 0.878961 AGCGGGTGTCAAACGTTCTC 60.879 55.000 0.00 0.00 0.00 2.87
141 142 0.878961 GAGCGGGTGTCAAACGTTCT 60.879 55.000 0.00 0.00 35.44 3.01
142 143 1.155424 TGAGCGGGTGTCAAACGTTC 61.155 55.000 0.00 7.14 38.15 3.95
143 144 1.153329 TGAGCGGGTGTCAAACGTT 60.153 52.632 0.00 0.00 0.00 3.99
144 145 1.885850 GTGAGCGGGTGTCAAACGT 60.886 57.895 0.00 0.00 0.00 3.99
145 146 1.433053 TTGTGAGCGGGTGTCAAACG 61.433 55.000 0.00 0.00 0.00 3.60
146 147 0.736053 TTTGTGAGCGGGTGTCAAAC 59.264 50.000 0.00 0.00 0.00 2.93
147 148 1.403679 CTTTTGTGAGCGGGTGTCAAA 59.596 47.619 0.00 0.00 0.00 2.69
148 149 1.021202 CTTTTGTGAGCGGGTGTCAA 58.979 50.000 0.00 0.00 0.00 3.18
149 150 0.179234 TCTTTTGTGAGCGGGTGTCA 59.821 50.000 0.00 0.00 0.00 3.58
150 151 1.305201 TTCTTTTGTGAGCGGGTGTC 58.695 50.000 0.00 0.00 0.00 3.67
151 152 1.757682 TTTCTTTTGTGAGCGGGTGT 58.242 45.000 0.00 0.00 0.00 4.16
152 153 2.857748 GTTTTTCTTTTGTGAGCGGGTG 59.142 45.455 0.00 0.00 0.00 4.61
153 154 2.494073 TGTTTTTCTTTTGTGAGCGGGT 59.506 40.909 0.00 0.00 0.00 5.28
154 155 3.157932 TGTTTTTCTTTTGTGAGCGGG 57.842 42.857 0.00 0.00 0.00 6.13
155 156 4.420168 TCTTGTTTTTCTTTTGTGAGCGG 58.580 39.130 0.00 0.00 0.00 5.52
156 157 4.500477 CCTCTTGTTTTTCTTTTGTGAGCG 59.500 41.667 0.00 0.00 0.00 5.03
157 158 4.805719 CCCTCTTGTTTTTCTTTTGTGAGC 59.194 41.667 0.00 0.00 0.00 4.26
158 159 5.105351 ACCCCTCTTGTTTTTCTTTTGTGAG 60.105 40.000 0.00 0.00 0.00 3.51
159 160 4.775253 ACCCCTCTTGTTTTTCTTTTGTGA 59.225 37.500 0.00 0.00 0.00 3.58
160 161 4.869861 CACCCCTCTTGTTTTTCTTTTGTG 59.130 41.667 0.00 0.00 0.00 3.33
161 162 4.622933 GCACCCCTCTTGTTTTTCTTTTGT 60.623 41.667 0.00 0.00 0.00 2.83
162 163 3.871006 GCACCCCTCTTGTTTTTCTTTTG 59.129 43.478 0.00 0.00 0.00 2.44
163 164 3.430236 CGCACCCCTCTTGTTTTTCTTTT 60.430 43.478 0.00 0.00 0.00 2.27
164 165 2.100749 CGCACCCCTCTTGTTTTTCTTT 59.899 45.455 0.00 0.00 0.00 2.52
165 166 1.681264 CGCACCCCTCTTGTTTTTCTT 59.319 47.619 0.00 0.00 0.00 2.52
166 167 1.318576 CGCACCCCTCTTGTTTTTCT 58.681 50.000 0.00 0.00 0.00 2.52
167 168 0.318699 GCGCACCCCTCTTGTTTTTC 60.319 55.000 0.30 0.00 0.00 2.29
168 169 1.739667 GCGCACCCCTCTTGTTTTT 59.260 52.632 0.30 0.00 0.00 1.94
169 170 2.200337 GGCGCACCCCTCTTGTTTT 61.200 57.895 10.83 0.00 0.00 2.43
170 171 2.597510 GGCGCACCCCTCTTGTTT 60.598 61.111 10.83 0.00 0.00 2.83
181 182 4.208686 CTACCTCCTCCGGCGCAC 62.209 72.222 10.83 0.00 0.00 5.34
184 185 2.907917 CTCCTACCTCCTCCGGCG 60.908 72.222 0.00 0.00 0.00 6.46
185 186 2.128507 CACTCCTACCTCCTCCGGC 61.129 68.421 0.00 0.00 0.00 6.13
186 187 2.128507 GCACTCCTACCTCCTCCGG 61.129 68.421 0.00 0.00 0.00 5.14
187 188 2.128507 GGCACTCCTACCTCCTCCG 61.129 68.421 0.00 0.00 0.00 4.63
188 189 2.128507 CGGCACTCCTACCTCCTCC 61.129 68.421 0.00 0.00 0.00 4.30
189 190 2.128507 CCGGCACTCCTACCTCCTC 61.129 68.421 0.00 0.00 0.00 3.71
190 191 1.950748 ATCCGGCACTCCTACCTCCT 61.951 60.000 0.00 0.00 0.00 3.69
191 192 1.049289 AATCCGGCACTCCTACCTCC 61.049 60.000 0.00 0.00 0.00 4.30
192 193 0.105039 CAATCCGGCACTCCTACCTC 59.895 60.000 0.00 0.00 0.00 3.85
193 194 1.972660 GCAATCCGGCACTCCTACCT 61.973 60.000 0.00 0.00 0.00 3.08
194 195 1.523938 GCAATCCGGCACTCCTACC 60.524 63.158 0.00 0.00 0.00 3.18
195 196 0.392461 TTGCAATCCGGCACTCCTAC 60.392 55.000 0.00 0.00 44.86 3.18
196 197 0.326595 TTTGCAATCCGGCACTCCTA 59.673 50.000 0.00 0.00 44.86 2.94
197 198 0.539438 TTTTGCAATCCGGCACTCCT 60.539 50.000 0.00 0.00 44.86 3.69
198 199 0.388520 GTTTTGCAATCCGGCACTCC 60.389 55.000 0.00 0.00 44.86 3.85
199 200 0.729140 CGTTTTGCAATCCGGCACTC 60.729 55.000 0.00 0.00 44.86 3.51
200 201 1.285641 CGTTTTGCAATCCGGCACT 59.714 52.632 0.00 0.00 44.86 4.40
201 202 1.732683 CCGTTTTGCAATCCGGCAC 60.733 57.895 20.15 2.83 44.86 5.01
202 203 1.899054 TCCGTTTTGCAATCCGGCA 60.899 52.632 24.72 14.85 43.19 5.69
203 204 1.443702 GTCCGTTTTGCAATCCGGC 60.444 57.895 24.72 18.11 40.23 6.13
204 205 0.312416 TTGTCCGTTTTGCAATCCGG 59.688 50.000 23.97 23.97 41.75 5.14
205 206 1.404477 GTTGTCCGTTTTGCAATCCG 58.596 50.000 0.00 5.58 0.00 4.18
206 207 1.404477 CGTTGTCCGTTTTGCAATCC 58.596 50.000 0.00 0.00 0.00 3.01
207 208 1.404477 CCGTTGTCCGTTTTGCAATC 58.596 50.000 0.00 0.00 33.66 2.67
208 209 0.031449 CCCGTTGTCCGTTTTGCAAT 59.969 50.000 0.00 0.00 33.66 3.56
209 210 1.433879 CCCGTTGTCCGTTTTGCAA 59.566 52.632 0.00 0.00 33.66 4.08
210 211 2.482333 CCCCGTTGTCCGTTTTGCA 61.482 57.895 0.00 0.00 33.66 4.08
211 212 1.726533 TTCCCCGTTGTCCGTTTTGC 61.727 55.000 0.00 0.00 33.66 3.68
212 213 0.739561 TTTCCCCGTTGTCCGTTTTG 59.260 50.000 0.00 0.00 33.66 2.44
213 214 1.472188 TTTTCCCCGTTGTCCGTTTT 58.528 45.000 0.00 0.00 33.66 2.43
214 215 1.338655 CATTTTCCCCGTTGTCCGTTT 59.661 47.619 0.00 0.00 33.66 3.60
215 216 0.955905 CATTTTCCCCGTTGTCCGTT 59.044 50.000 0.00 0.00 33.66 4.44
216 217 1.520600 GCATTTTCCCCGTTGTCCGT 61.521 55.000 0.00 0.00 33.66 4.69
217 218 1.211709 GCATTTTCCCCGTTGTCCG 59.788 57.895 0.00 0.00 0.00 4.79
218 219 0.526211 GAGCATTTTCCCCGTTGTCC 59.474 55.000 0.00 0.00 0.00 4.02
219 220 0.168128 CGAGCATTTTCCCCGTTGTC 59.832 55.000 0.00 0.00 0.00 3.18
220 221 1.241315 CCGAGCATTTTCCCCGTTGT 61.241 55.000 0.00 0.00 0.00 3.32
221 222 0.958382 TCCGAGCATTTTCCCCGTTG 60.958 55.000 0.00 0.00 0.00 4.10
222 223 0.034477 ATCCGAGCATTTTCCCCGTT 60.034 50.000 0.00 0.00 0.00 4.44
223 224 0.748005 CATCCGAGCATTTTCCCCGT 60.748 55.000 0.00 0.00 0.00 5.28
224 225 2.024918 CATCCGAGCATTTTCCCCG 58.975 57.895 0.00 0.00 0.00 5.73
225 226 1.037030 TGCATCCGAGCATTTTCCCC 61.037 55.000 0.00 0.00 40.11 4.81
226 227 2.492418 TGCATCCGAGCATTTTCCC 58.508 52.632 0.00 0.00 40.11 3.97
234 235 0.528466 TTCGTCTCATGCATCCGAGC 60.528 55.000 8.78 4.49 0.00 5.03
235 236 1.203928 GTTCGTCTCATGCATCCGAG 58.796 55.000 7.55 7.55 0.00 4.63
236 237 0.530288 TGTTCGTCTCATGCATCCGA 59.470 50.000 0.00 0.00 0.00 4.55
237 238 0.647410 GTGTTCGTCTCATGCATCCG 59.353 55.000 0.00 0.00 0.00 4.18
238 239 0.647410 CGTGTTCGTCTCATGCATCC 59.353 55.000 0.00 0.00 0.00 3.51
244 245 7.633908 GCATTTGCATACGTGTTCGTCTCAT 62.634 44.000 0.00 0.00 44.39 2.90
245 246 6.413067 GCATTTGCATACGTGTTCGTCTCA 62.413 45.833 0.00 0.00 44.39 3.27
246 247 4.020420 GCATTTGCATACGTGTTCGTCTC 61.020 47.826 0.00 0.00 44.39 3.36
247 248 2.159707 GCATTTGCATACGTGTTCGTCT 60.160 45.455 0.00 0.00 44.39 4.18
248 249 2.166007 GCATTTGCATACGTGTTCGTC 58.834 47.619 0.00 0.00 44.39 4.20
249 250 2.241259 GCATTTGCATACGTGTTCGT 57.759 45.000 0.00 0.00 45.97 3.85
261 262 2.933260 TCATCATGTGCATTGCATTTGC 59.067 40.909 15.49 13.65 41.91 3.68
262 263 3.929610 TGTCATCATGTGCATTGCATTTG 59.070 39.130 15.49 14.76 41.91 2.32
263 264 4.195225 TGTCATCATGTGCATTGCATTT 57.805 36.364 15.49 2.46 41.91 2.32
264 265 3.878160 TGTCATCATGTGCATTGCATT 57.122 38.095 15.49 2.84 41.91 3.56
265 266 3.716601 CATGTCATCATGTGCATTGCAT 58.283 40.909 15.49 0.00 44.37 3.96
266 267 3.157932 CATGTCATCATGTGCATTGCA 57.842 42.857 7.38 7.38 44.37 4.08
273 274 7.066284 ATGCATCTCATATCATGTCATCATGTG 59.934 37.037 0.00 0.00 41.56 3.21
274 275 7.066284 CATGCATCTCATATCATGTCATCATGT 59.934 37.037 0.00 0.27 41.53 3.21
275 276 7.280876 TCATGCATCTCATATCATGTCATCATG 59.719 37.037 0.00 2.27 41.82 3.07
276 277 7.281100 GTCATGCATCTCATATCATGTCATCAT 59.719 37.037 0.00 0.00 37.95 2.45
277 278 6.594159 GTCATGCATCTCATATCATGTCATCA 59.406 38.462 0.00 0.00 37.95 3.07
278 279 6.594159 TGTCATGCATCTCATATCATGTCATC 59.406 38.462 0.00 0.00 37.95 2.92
279 280 6.472887 TGTCATGCATCTCATATCATGTCAT 58.527 36.000 0.00 0.00 37.95 3.06
280 281 5.860611 TGTCATGCATCTCATATCATGTCA 58.139 37.500 0.00 0.00 37.95 3.58
281 282 6.594159 TCATGTCATGCATCTCATATCATGTC 59.406 38.462 8.03 0.00 41.17 3.06
282 283 6.472887 TCATGTCATGCATCTCATATCATGT 58.527 36.000 8.03 0.00 41.17 3.21
283 284 6.985188 TCATGTCATGCATCTCATATCATG 57.015 37.500 8.03 10.74 41.42 3.07
284 285 6.940298 TGTTCATGTCATGCATCTCATATCAT 59.060 34.615 8.03 1.18 35.19 2.45
285 286 6.292923 TGTTCATGTCATGCATCTCATATCA 58.707 36.000 8.03 8.85 35.19 2.15
286 287 6.796705 TGTTCATGTCATGCATCTCATATC 57.203 37.500 8.03 7.09 35.19 1.63
287 288 7.576861 TTTGTTCATGTCATGCATCTCATAT 57.423 32.000 8.03 0.00 35.19 1.78
288 289 7.393841 TTTTGTTCATGTCATGCATCTCATA 57.606 32.000 8.03 0.00 35.19 2.15
289 290 5.907866 TTTGTTCATGTCATGCATCTCAT 57.092 34.783 8.03 1.47 35.19 2.90
290 291 5.708877 TTTTGTTCATGTCATGCATCTCA 57.291 34.783 8.03 0.00 35.19 3.27
291 292 5.005394 GCATTTTGTTCATGTCATGCATCTC 59.995 40.000 8.03 0.00 35.19 2.75
292 293 4.868171 GCATTTTGTTCATGTCATGCATCT 59.132 37.500 8.03 0.00 35.19 2.90
293 294 4.627900 TGCATTTTGTTCATGTCATGCATC 59.372 37.500 8.03 2.04 38.64 3.91
294 295 4.570930 TGCATTTTGTTCATGTCATGCAT 58.429 34.783 8.03 0.00 38.64 3.96
295 296 3.991367 TGCATTTTGTTCATGTCATGCA 58.009 36.364 8.03 12.50 40.84 3.96
296 297 4.994220 TTGCATTTTGTTCATGTCATGC 57.006 36.364 8.03 2.31 0.00 4.06
297 298 5.841811 CGTTTTGCATTTTGTTCATGTCATG 59.158 36.000 6.47 6.47 0.00 3.07
298 299 5.752472 TCGTTTTGCATTTTGTTCATGTCAT 59.248 32.000 0.00 0.00 0.00 3.06
299 300 5.105063 TCGTTTTGCATTTTGTTCATGTCA 58.895 33.333 0.00 0.00 0.00 3.58
300 301 5.633996 TCGTTTTGCATTTTGTTCATGTC 57.366 34.783 0.00 0.00 0.00 3.06
301 302 6.414408 TTTCGTTTTGCATTTTGTTCATGT 57.586 29.167 0.00 0.00 0.00 3.21
302 303 7.269937 TGTTTTTCGTTTTGCATTTTGTTCATG 59.730 29.630 0.00 0.00 0.00 3.07
303 304 7.301054 TGTTTTTCGTTTTGCATTTTGTTCAT 58.699 26.923 0.00 0.00 0.00 2.57
304 305 6.658831 TGTTTTTCGTTTTGCATTTTGTTCA 58.341 28.000 0.00 0.00 0.00 3.18
305 306 7.540362 TTGTTTTTCGTTTTGCATTTTGTTC 57.460 28.000 0.00 0.00 0.00 3.18
306 307 7.914537 TTTGTTTTTCGTTTTGCATTTTGTT 57.085 24.000 0.00 0.00 0.00 2.83
307 308 7.096436 GGTTTTGTTTTTCGTTTTGCATTTTGT 60.096 29.630 0.00 0.00 0.00 2.83
308 309 7.216522 GGTTTTGTTTTTCGTTTTGCATTTTG 58.783 30.769 0.00 0.00 0.00 2.44
309 310 6.363626 GGGTTTTGTTTTTCGTTTTGCATTTT 59.636 30.769 0.00 0.00 0.00 1.82
310 311 5.859114 GGGTTTTGTTTTTCGTTTTGCATTT 59.141 32.000 0.00 0.00 0.00 2.32
311 312 5.394802 GGGTTTTGTTTTTCGTTTTGCATT 58.605 33.333 0.00 0.00 0.00 3.56
312 313 4.436183 CGGGTTTTGTTTTTCGTTTTGCAT 60.436 37.500 0.00 0.00 0.00 3.96
313 314 3.120649 CGGGTTTTGTTTTTCGTTTTGCA 60.121 39.130 0.00 0.00 0.00 4.08
314 315 3.123116 TCGGGTTTTGTTTTTCGTTTTGC 59.877 39.130 0.00 0.00 0.00 3.68
315 316 4.434461 GGTCGGGTTTTGTTTTTCGTTTTG 60.434 41.667 0.00 0.00 0.00 2.44
316 317 3.679025 GGTCGGGTTTTGTTTTTCGTTTT 59.321 39.130 0.00 0.00 0.00 2.43
317 318 3.252400 GGTCGGGTTTTGTTTTTCGTTT 58.748 40.909 0.00 0.00 0.00 3.60
318 319 2.230750 TGGTCGGGTTTTGTTTTTCGTT 59.769 40.909 0.00 0.00 0.00 3.85
319 320 1.817447 TGGTCGGGTTTTGTTTTTCGT 59.183 42.857 0.00 0.00 0.00 3.85
320 321 2.186891 GTGGTCGGGTTTTGTTTTTCG 58.813 47.619 0.00 0.00 0.00 3.46
321 322 2.159407 TCGTGGTCGGGTTTTGTTTTTC 60.159 45.455 0.00 0.00 37.69 2.29
322 323 1.817447 TCGTGGTCGGGTTTTGTTTTT 59.183 42.857 0.00 0.00 37.69 1.94
323 324 1.461559 TCGTGGTCGGGTTTTGTTTT 58.538 45.000 0.00 0.00 37.69 2.43
324 325 1.402613 CTTCGTGGTCGGGTTTTGTTT 59.597 47.619 0.00 0.00 37.69 2.83
325 326 1.018910 CTTCGTGGTCGGGTTTTGTT 58.981 50.000 0.00 0.00 37.69 2.83
326 327 0.816421 CCTTCGTGGTCGGGTTTTGT 60.816 55.000 0.00 0.00 37.69 2.83
327 328 1.512156 CCCTTCGTGGTCGGGTTTTG 61.512 60.000 0.00 0.00 37.69 2.44
328 329 1.228033 CCCTTCGTGGTCGGGTTTT 60.228 57.895 0.00 0.00 37.69 2.43
329 330 1.698067 TTCCCTTCGTGGTCGGGTTT 61.698 55.000 0.00 0.00 39.10 3.27
330 331 1.486145 ATTCCCTTCGTGGTCGGGTT 61.486 55.000 0.00 0.00 39.10 4.11
331 332 0.615544 TATTCCCTTCGTGGTCGGGT 60.616 55.000 0.00 0.00 39.10 5.28
332 333 0.756903 ATATTCCCTTCGTGGTCGGG 59.243 55.000 0.00 0.00 39.41 5.14
333 334 1.411246 TGATATTCCCTTCGTGGTCGG 59.589 52.381 0.00 0.00 37.69 4.79
334 335 2.882927 TGATATTCCCTTCGTGGTCG 57.117 50.000 0.00 0.00 38.55 4.79
335 336 5.465724 GTGTTATGATATTCCCTTCGTGGTC 59.534 44.000 0.00 0.00 0.00 4.02
336 337 5.104693 TGTGTTATGATATTCCCTTCGTGGT 60.105 40.000 0.00 0.00 0.00 4.16
337 338 5.364778 TGTGTTATGATATTCCCTTCGTGG 58.635 41.667 0.00 0.00 0.00 4.94
338 339 6.073058 CCATGTGTTATGATATTCCCTTCGTG 60.073 42.308 0.00 0.00 0.00 4.35
339 340 5.997746 CCATGTGTTATGATATTCCCTTCGT 59.002 40.000 0.00 0.00 0.00 3.85
340 341 5.106555 GCCATGTGTTATGATATTCCCTTCG 60.107 44.000 0.00 0.00 0.00 3.79
341 342 5.183904 GGCCATGTGTTATGATATTCCCTTC 59.816 44.000 0.00 0.00 0.00 3.46
342 343 5.079643 GGCCATGTGTTATGATATTCCCTT 58.920 41.667 0.00 0.00 0.00 3.95
343 344 4.106179 TGGCCATGTGTTATGATATTCCCT 59.894 41.667 0.00 0.00 0.00 4.20
344 345 4.406456 TGGCCATGTGTTATGATATTCCC 58.594 43.478 0.00 0.00 0.00 3.97
345 346 6.403866 TTTGGCCATGTGTTATGATATTCC 57.596 37.500 6.09 0.00 0.00 3.01
346 347 8.767085 CATTTTTGGCCATGTGTTATGATATTC 58.233 33.333 6.09 0.00 0.00 1.75
347 348 7.716123 CCATTTTTGGCCATGTGTTATGATATT 59.284 33.333 6.09 0.00 0.00 1.28
348 349 7.218614 CCATTTTTGGCCATGTGTTATGATAT 58.781 34.615 6.09 0.00 0.00 1.63
349 350 6.580788 CCATTTTTGGCCATGTGTTATGATA 58.419 36.000 6.09 0.00 0.00 2.15
350 351 5.430007 CCATTTTTGGCCATGTGTTATGAT 58.570 37.500 6.09 0.00 0.00 2.45
351 352 4.829968 CCATTTTTGGCCATGTGTTATGA 58.170 39.130 6.09 0.00 0.00 2.15
364 365 0.109781 CCGACTCGTGCCATTTTTGG 60.110 55.000 0.00 0.00 0.00 3.28
365 366 0.871722 TCCGACTCGTGCCATTTTTG 59.128 50.000 0.00 0.00 0.00 2.44
366 367 1.600023 TTCCGACTCGTGCCATTTTT 58.400 45.000 0.00 0.00 0.00 1.94
367 368 1.821216 ATTCCGACTCGTGCCATTTT 58.179 45.000 0.00 0.00 0.00 1.82
368 369 1.821216 AATTCCGACTCGTGCCATTT 58.179 45.000 0.00 0.00 0.00 2.32
369 370 2.277084 GTAATTCCGACTCGTGCCATT 58.723 47.619 0.00 0.00 0.00 3.16
370 371 1.206132 TGTAATTCCGACTCGTGCCAT 59.794 47.619 0.00 0.00 0.00 4.40
371 372 0.604073 TGTAATTCCGACTCGTGCCA 59.396 50.000 0.00 0.00 0.00 4.92
372 373 1.717194 TTGTAATTCCGACTCGTGCC 58.283 50.000 0.00 0.00 0.00 5.01
373 374 5.432157 CATATTTGTAATTCCGACTCGTGC 58.568 41.667 0.00 0.00 0.00 5.34
374 375 5.751509 TCCATATTTGTAATTCCGACTCGTG 59.248 40.000 0.00 0.00 0.00 4.35
375 376 5.909477 TCCATATTTGTAATTCCGACTCGT 58.091 37.500 0.00 0.00 0.00 4.18
376 377 6.838198 TTCCATATTTGTAATTCCGACTCG 57.162 37.500 0.00 0.00 0.00 4.18
377 378 8.209917 ACTTTCCATATTTGTAATTCCGACTC 57.790 34.615 0.00 0.00 0.00 3.36
378 379 8.575649 AACTTTCCATATTTGTAATTCCGACT 57.424 30.769 0.00 0.00 0.00 4.18
379 380 9.712359 GTAACTTTCCATATTTGTAATTCCGAC 57.288 33.333 0.00 0.00 0.00 4.79
380 381 9.451002 TGTAACTTTCCATATTTGTAATTCCGA 57.549 29.630 0.00 0.00 0.00 4.55
385 386 8.846211 CCGGATGTAACTTTCCATATTTGTAAT 58.154 33.333 0.00 0.00 31.99 1.89
386 387 7.283580 CCCGGATGTAACTTTCCATATTTGTAA 59.716 37.037 0.73 0.00 31.99 2.41
387 388 6.768861 CCCGGATGTAACTTTCCATATTTGTA 59.231 38.462 0.73 0.00 31.99 2.41
388 389 5.592688 CCCGGATGTAACTTTCCATATTTGT 59.407 40.000 0.73 0.00 31.99 2.83
389 390 5.009610 CCCCGGATGTAACTTTCCATATTTG 59.990 44.000 0.73 0.00 31.99 2.32
390 391 5.137551 CCCCGGATGTAACTTTCCATATTT 58.862 41.667 0.73 0.00 31.99 1.40
391 392 4.167307 ACCCCGGATGTAACTTTCCATATT 59.833 41.667 0.73 0.00 31.99 1.28
392 393 3.720002 ACCCCGGATGTAACTTTCCATAT 59.280 43.478 0.73 0.00 31.99 1.78
393 394 3.116959 ACCCCGGATGTAACTTTCCATA 58.883 45.455 0.73 0.00 31.99 2.74
394 395 1.920351 ACCCCGGATGTAACTTTCCAT 59.080 47.619 0.73 0.00 31.99 3.41
395 396 1.003812 CACCCCGGATGTAACTTTCCA 59.996 52.381 0.73 0.00 31.99 3.53
396 397 1.003928 ACACCCCGGATGTAACTTTCC 59.996 52.381 0.73 0.00 0.00 3.13
397 398 2.484742 ACACCCCGGATGTAACTTTC 57.515 50.000 0.73 0.00 0.00 2.62
398 399 2.963599 AACACCCCGGATGTAACTTT 57.036 45.000 0.73 0.00 0.00 2.66
399 400 2.638855 TGTAACACCCCGGATGTAACTT 59.361 45.455 0.73 0.00 0.00 2.66
400 401 2.259012 TGTAACACCCCGGATGTAACT 58.741 47.619 0.73 0.00 0.00 2.24
401 402 2.766345 TGTAACACCCCGGATGTAAC 57.234 50.000 0.73 0.05 0.00 2.50
402 403 4.288398 TCTATGTAACACCCCGGATGTAA 58.712 43.478 0.73 0.00 0.00 2.41
403 404 3.893200 CTCTATGTAACACCCCGGATGTA 59.107 47.826 0.73 0.00 0.00 2.29
404 405 2.698797 CTCTATGTAACACCCCGGATGT 59.301 50.000 0.73 3.79 0.00 3.06
405 406 2.698797 ACTCTATGTAACACCCCGGATG 59.301 50.000 0.73 2.98 0.00 3.51
406 407 3.042059 ACTCTATGTAACACCCCGGAT 57.958 47.619 0.73 0.00 0.00 4.18
407 408 2.498481 CAACTCTATGTAACACCCCGGA 59.502 50.000 0.73 0.00 0.00 5.14
408 409 2.235402 ACAACTCTATGTAACACCCCGG 59.765 50.000 0.00 0.00 0.00 5.73
409 410 3.604875 ACAACTCTATGTAACACCCCG 57.395 47.619 0.00 0.00 0.00 5.73
410 411 4.081309 TGCTACAACTCTATGTAACACCCC 60.081 45.833 0.00 0.00 35.48 4.95
411 412 5.080969 TGCTACAACTCTATGTAACACCC 57.919 43.478 0.00 0.00 35.48 4.61
412 413 5.721232 ACTGCTACAACTCTATGTAACACC 58.279 41.667 0.00 0.00 35.48 4.16
413 414 5.805994 GGACTGCTACAACTCTATGTAACAC 59.194 44.000 0.00 0.00 35.48 3.32
414 415 5.479027 TGGACTGCTACAACTCTATGTAACA 59.521 40.000 0.00 0.00 35.48 2.41
415 416 5.962433 TGGACTGCTACAACTCTATGTAAC 58.038 41.667 0.00 0.00 35.48 2.50
416 417 5.127194 CCTGGACTGCTACAACTCTATGTAA 59.873 44.000 0.00 0.00 35.48 2.41
417 418 4.645136 CCTGGACTGCTACAACTCTATGTA 59.355 45.833 0.00 0.00 34.75 2.29
418 419 3.449018 CCTGGACTGCTACAACTCTATGT 59.551 47.826 0.00 0.00 37.32 2.29
419 420 3.701542 TCCTGGACTGCTACAACTCTATG 59.298 47.826 0.00 0.00 0.00 2.23
420 421 3.982516 TCCTGGACTGCTACAACTCTAT 58.017 45.455 0.00 0.00 0.00 1.98
508 509 1.586154 CGCCAACTGATTCCCCACAC 61.586 60.000 0.00 0.00 0.00 3.82
509 510 1.303236 CGCCAACTGATTCCCCACA 60.303 57.895 0.00 0.00 0.00 4.17
609 611 1.337728 CGTGTTGGAGAGCATACCACA 60.338 52.381 0.00 0.00 35.81 4.17
730 732 8.932791 CAAACATAGAGTCAAAACCTAATACGT 58.067 33.333 0.00 0.00 0.00 3.57
746 748 7.065085 CCATCACTTTCCACTACAAACATAGAG 59.935 40.741 0.00 0.00 0.00 2.43
779 781 1.040339 AAAACAAAGCGAGGCCACCA 61.040 50.000 5.01 0.00 0.00 4.17
917 920 7.835682 TCATCCCAAGATAGATGTTGTTCATTT 59.164 33.333 0.00 0.00 40.63 2.32
926 929 5.545588 CGAATGTCATCCCAAGATAGATGT 58.454 41.667 0.00 0.00 40.63 3.06
1119 1125 0.539051 CGCCTCTCCTCCAAGTGAAT 59.461 55.000 0.00 0.00 0.00 2.57
1151 1157 0.110486 ACAAACTGCCCGATCAAGGT 59.890 50.000 0.00 0.00 0.00 3.50
1411 1420 3.134401 CATGCACTGCTCTCGTTCT 57.866 52.632 1.98 0.00 0.00 3.01
1432 1441 4.631234 TCCTGGTCCCAAGTATGTAGATT 58.369 43.478 0.00 0.00 0.00 2.40
1609 1618 4.112634 ACCAATTTGCCTGTCCTCTTTA 57.887 40.909 0.00 0.00 0.00 1.85
1619 1628 2.355310 CCATGCATCAACCAATTTGCCT 60.355 45.455 0.00 0.00 34.88 4.75
1927 1937 1.997874 GTCCATCTGGCCCTGGAGT 60.998 63.158 16.76 0.00 42.10 3.85
1981 1991 5.400653 CCTCCTCAATTAATTCTTCCCCCAT 60.401 44.000 0.00 0.00 0.00 4.00
2099 2110 1.490490 AGCTGATCGGCCTAAATTGGA 59.510 47.619 23.02 0.00 0.00 3.53
2183 2198 6.599638 ACTCTGTGTTGGGCTAATAATTTCTC 59.400 38.462 0.00 0.00 0.00 2.87
2234 2249 7.305813 TCGTAGGCCACTAAAATATTATCCA 57.694 36.000 5.01 0.00 0.00 3.41
2365 2382 8.147704 ACGAAAACCCAATTTCAACATAATCTT 58.852 29.630 0.00 0.00 38.87 2.40
2406 2423 3.269178 TGAGACGCATTGCATAATCACA 58.731 40.909 9.69 2.87 0.00 3.58
2407 2424 3.950087 TGAGACGCATTGCATAATCAC 57.050 42.857 9.69 0.38 0.00 3.06
2586 2606 7.216973 GTCTCTACAGACTTTAACTCCTGAA 57.783 40.000 0.00 0.00 45.20 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.