Multiple sequence alignment - TraesCS4D01G141600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G141600 chr4D 100.000 4727 0 0 1 4727 126648083 126643357 0.000000e+00 8730
1 TraesCS4D01G141600 chr4D 85.000 120 15 3 1693 1811 53866756 53866639 8.310000e-23 119
2 TraesCS4D01G141600 chr4A 97.110 3944 91 15 565 4493 443481124 443485059 0.000000e+00 6630
3 TraesCS4D01G141600 chr4A 90.909 99 8 1 429 526 443481031 443481129 1.070000e-26 132
4 TraesCS4D01G141600 chrUn 94.321 405 13 9 1 398 445623762 445624163 3.130000e-171 612
5 TraesCS4D01G141600 chr1D 92.541 429 22 10 20 442 30419404 30419828 1.450000e-169 606
6 TraesCS4D01G141600 chr5B 93.580 405 16 9 1 398 430149291 430148890 3.150000e-166 595
7 TraesCS4D01G141600 chr5B 87.500 120 14 1 1693 1812 123753438 123753556 2.290000e-28 137
8 TraesCS4D01G141600 chr5D 90.023 431 37 6 1 428 239232911 239232484 1.920000e-153 553
9 TraesCS4D01G141600 chr4B 89.815 432 36 8 1 428 665222731 665223158 8.940000e-152 547
10 TraesCS4D01G141600 chr4B 86.408 103 11 3 1710 1811 78821058 78820958 5.000000e-20 110
11 TraesCS4D01G141600 chr7A 89.559 431 39 6 1 428 84033716 84033289 4.160000e-150 542
12 TraesCS4D01G141600 chr7A 93.590 78 5 0 1733 1810 573430882 573430959 2.990000e-22 117
13 TraesCS4D01G141600 chr1B 89.583 432 35 9 1 428 194769357 194768932 1.500000e-149 540
14 TraesCS4D01G141600 chr1A 89.095 431 40 7 1 428 454544233 454544659 3.240000e-146 529
15 TraesCS4D01G141600 chr2D 89.302 430 33 9 1 428 39467681 39467263 1.170000e-145 527
16 TraesCS4D01G141600 chr3D 85.827 127 9 3 1693 1810 172356579 172356705 4.970000e-25 126
17 TraesCS4D01G141600 chr3A 93.671 79 5 0 1733 1811 686191291 686191213 8.310000e-23 119
18 TraesCS4D01G141600 chr3A 91.667 84 4 3 1733 1815 177109003 177109084 3.870000e-21 113
19 TraesCS4D01G141600 chr7B 92.593 81 6 0 1730 1810 533773404 533773484 2.990000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G141600 chr4D 126643357 126648083 4726 True 8730 8730 100.0000 1 4727 1 chr4D.!!$R2 4726
1 TraesCS4D01G141600 chr4A 443481031 443485059 4028 False 3381 6630 94.0095 429 4493 2 chr4A.!!$F1 4064

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.034477 ATACTTCAACAAGGGCCGGG 60.034 55.0 2.18 0.00 33.37 5.73 F
753 755 0.233332 GATATGCTCTGCGCCGTTTC 59.767 55.0 4.18 0.00 38.05 2.78 F
804 806 0.251653 TCTTCTCCACCGGCACTACT 60.252 55.0 0.00 0.00 0.00 2.57 F
1145 1152 0.316841 TTTGTTCCTGAAATGGCGCC 59.683 50.0 22.73 22.73 0.00 6.53 F
2587 2596 1.006813 TGCCCACCATAAATCAGGGT 58.993 50.0 0.00 0.00 43.87 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1586 1.116308 TGGACAAGACCAGACAACGA 58.884 50.000 0.00 0.00 34.77 3.85 R
2566 2575 1.024271 CCTGATTTATGGTGGGCACG 58.976 55.000 0.00 0.00 0.00 5.34 R
2587 2596 8.070034 AGCCAATTAATCATCAAGATGTGAAA 57.930 30.769 9.66 3.82 40.50 2.69 R
2964 2973 1.203288 TGGCAAGACCATGGGGATTTT 60.203 47.619 18.09 0.00 46.36 1.82 R
4534 4549 0.108615 CAGGGAAGTGACCGCTGTAG 60.109 60.000 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.726258 TCTAAGTGACAACAATGCTACATG 57.274 37.500 0.00 0.00 0.00 3.21
24 25 6.230472 TCTAAGTGACAACAATGCTACATGT 58.770 36.000 2.69 2.69 0.00 3.21
25 26 5.772825 AAGTGACAACAATGCTACATGTT 57.227 34.783 2.30 0.00 40.24 2.71
32 33 4.916983 ACAATGCTACATGTTGTGTTGT 57.083 36.364 18.65 18.65 42.29 3.32
33 34 4.858935 ACAATGCTACATGTTGTGTTGTC 58.141 39.130 18.65 1.70 42.29 3.18
34 35 4.580167 ACAATGCTACATGTTGTGTTGTCT 59.420 37.500 18.65 5.81 42.29 3.41
35 36 5.067674 ACAATGCTACATGTTGTGTTGTCTT 59.932 36.000 18.65 5.33 42.29 3.01
36 37 5.772825 ATGCTACATGTTGTGTTGTCTTT 57.227 34.783 2.30 0.00 42.29 2.52
37 38 5.574891 TGCTACATGTTGTGTTGTCTTTT 57.425 34.783 2.30 0.00 42.29 2.27
38 39 5.960113 TGCTACATGTTGTGTTGTCTTTTT 58.040 33.333 2.30 0.00 42.29 1.94
97 98 9.941325 AGATCAGAGATAATAAAATTGATCGCT 57.059 29.630 0.00 0.00 42.45 4.93
99 100 8.539770 TCAGAGATAATAAAATTGATCGCTCC 57.460 34.615 0.00 0.00 0.00 4.70
100 101 7.329471 TCAGAGATAATAAAATTGATCGCTCCG 59.671 37.037 0.00 0.00 0.00 4.63
101 102 6.591834 AGAGATAATAAAATTGATCGCTCCGG 59.408 38.462 0.00 0.00 0.00 5.14
102 103 6.464222 AGATAATAAAATTGATCGCTCCGGA 58.536 36.000 2.93 2.93 0.00 5.14
103 104 7.106239 AGATAATAAAATTGATCGCTCCGGAT 58.894 34.615 3.57 0.00 0.00 4.18
104 105 5.362556 AATAAAATTGATCGCTCCGGATG 57.637 39.130 3.57 0.00 0.00 3.51
105 106 2.620251 AAATTGATCGCTCCGGATGA 57.380 45.000 3.57 6.83 0.00 2.92
106 107 2.847327 AATTGATCGCTCCGGATGAT 57.153 45.000 16.79 16.79 0.00 2.45
107 108 2.090400 ATTGATCGCTCCGGATGATG 57.910 50.000 20.55 4.15 0.00 3.07
108 109 0.601046 TTGATCGCTCCGGATGATGC 60.601 55.000 20.55 12.88 0.00 3.91
109 110 1.291588 GATCGCTCCGGATGATGCT 59.708 57.895 20.55 0.00 0.00 3.79
110 111 0.320247 GATCGCTCCGGATGATGCTT 60.320 55.000 20.55 5.04 0.00 3.91
111 112 0.107456 ATCGCTCCGGATGATGCTTT 59.893 50.000 16.24 0.00 0.00 3.51
112 113 0.811219 TCGCTCCGGATGATGCTTTG 60.811 55.000 3.57 0.00 0.00 2.77
113 114 0.811219 CGCTCCGGATGATGCTTTGA 60.811 55.000 3.57 0.00 0.00 2.69
114 115 1.382522 GCTCCGGATGATGCTTTGAA 58.617 50.000 3.57 0.00 0.00 2.69
115 116 1.745087 GCTCCGGATGATGCTTTGAAA 59.255 47.619 3.57 0.00 0.00 2.69
116 117 2.164219 GCTCCGGATGATGCTTTGAAAA 59.836 45.455 3.57 0.00 0.00 2.29
117 118 3.181483 GCTCCGGATGATGCTTTGAAAAT 60.181 43.478 3.57 0.00 0.00 1.82
118 119 4.357142 CTCCGGATGATGCTTTGAAAATG 58.643 43.478 3.57 0.00 0.00 2.32
119 120 3.763360 TCCGGATGATGCTTTGAAAATGT 59.237 39.130 0.00 0.00 0.00 2.71
120 121 4.107622 CCGGATGATGCTTTGAAAATGTC 58.892 43.478 0.00 0.00 0.00 3.06
121 122 4.380761 CCGGATGATGCTTTGAAAATGTCA 60.381 41.667 0.00 0.00 0.00 3.58
122 123 4.796830 CGGATGATGCTTTGAAAATGTCAG 59.203 41.667 0.00 0.00 37.61 3.51
123 124 5.392272 CGGATGATGCTTTGAAAATGTCAGA 60.392 40.000 0.00 0.00 37.61 3.27
124 125 6.034591 GGATGATGCTTTGAAAATGTCAGAG 58.965 40.000 0.00 0.00 40.65 3.35
125 126 6.349944 GGATGATGCTTTGAAAATGTCAGAGT 60.350 38.462 0.00 0.00 40.00 3.24
126 127 5.765176 TGATGCTTTGAAAATGTCAGAGTG 58.235 37.500 0.00 0.00 40.00 3.51
127 128 5.532032 TGATGCTTTGAAAATGTCAGAGTGA 59.468 36.000 0.00 0.00 40.00 3.41
149 150 7.346208 TGACAAAGTCACGAATGTAACTATG 57.654 36.000 0.00 0.00 37.67 2.23
150 151 7.149307 TGACAAAGTCACGAATGTAACTATGA 58.851 34.615 0.00 0.00 37.67 2.15
151 152 7.328493 TGACAAAGTCACGAATGTAACTATGAG 59.672 37.037 0.00 0.00 37.67 2.90
152 153 6.090898 ACAAAGTCACGAATGTAACTATGAGC 59.909 38.462 0.00 0.00 0.00 4.26
153 154 4.352039 AGTCACGAATGTAACTATGAGCG 58.648 43.478 0.00 0.00 0.00 5.03
154 155 4.095932 AGTCACGAATGTAACTATGAGCGA 59.904 41.667 0.00 0.00 0.00 4.93
155 156 4.204573 GTCACGAATGTAACTATGAGCGAC 59.795 45.833 0.00 0.00 0.00 5.19
156 157 4.095932 TCACGAATGTAACTATGAGCGACT 59.904 41.667 0.00 0.00 0.00 4.18
157 158 4.205181 CACGAATGTAACTATGAGCGACTG 59.795 45.833 0.00 0.00 0.00 3.51
158 159 3.731216 CGAATGTAACTATGAGCGACTGG 59.269 47.826 0.00 0.00 0.00 4.00
159 160 4.497507 CGAATGTAACTATGAGCGACTGGA 60.498 45.833 0.00 0.00 0.00 3.86
160 161 3.777465 TGTAACTATGAGCGACTGGAC 57.223 47.619 0.00 0.00 0.00 4.02
161 162 3.353557 TGTAACTATGAGCGACTGGACT 58.646 45.455 0.00 0.00 0.00 3.85
162 163 3.377485 TGTAACTATGAGCGACTGGACTC 59.623 47.826 0.00 0.00 0.00 3.36
163 164 2.130272 ACTATGAGCGACTGGACTCA 57.870 50.000 0.00 0.00 46.34 3.41
164 165 2.447443 ACTATGAGCGACTGGACTCAA 58.553 47.619 0.00 0.00 45.49 3.02
165 166 2.826128 ACTATGAGCGACTGGACTCAAA 59.174 45.455 0.00 0.00 45.49 2.69
166 167 2.839486 ATGAGCGACTGGACTCAAAA 57.161 45.000 0.00 0.00 45.49 2.44
167 168 2.154854 TGAGCGACTGGACTCAAAAG 57.845 50.000 0.00 0.00 39.89 2.27
168 169 1.412710 TGAGCGACTGGACTCAAAAGT 59.587 47.619 0.00 0.00 39.89 2.66
183 184 7.027778 ACTCAAAAGTCATCCTGTTTTACAC 57.972 36.000 0.00 0.00 0.00 2.90
184 185 6.055231 TCAAAAGTCATCCTGTTTTACACG 57.945 37.500 0.00 0.00 0.00 4.49
185 186 5.818336 TCAAAAGTCATCCTGTTTTACACGA 59.182 36.000 0.00 0.00 0.00 4.35
186 187 6.485313 TCAAAAGTCATCCTGTTTTACACGAT 59.515 34.615 0.00 0.00 0.00 3.73
187 188 5.862924 AAGTCATCCTGTTTTACACGATG 57.137 39.130 10.57 10.57 40.56 3.84
188 189 5.147330 AGTCATCCTGTTTTACACGATGA 57.853 39.130 13.71 13.71 43.38 2.92
189 190 5.171476 AGTCATCCTGTTTTACACGATGAG 58.829 41.667 16.46 0.00 44.89 2.90
190 191 5.047306 AGTCATCCTGTTTTACACGATGAGA 60.047 40.000 16.46 1.28 44.89 3.27
191 192 5.812642 GTCATCCTGTTTTACACGATGAGAT 59.187 40.000 16.46 0.00 44.89 2.75
192 193 5.812127 TCATCCTGTTTTACACGATGAGATG 59.188 40.000 13.71 0.00 41.94 2.90
193 194 3.932710 TCCTGTTTTACACGATGAGATGC 59.067 43.478 0.00 0.00 0.00 3.91
194 195 3.684305 CCTGTTTTACACGATGAGATGCA 59.316 43.478 0.00 0.00 0.00 3.96
195 196 4.333649 CCTGTTTTACACGATGAGATGCAT 59.666 41.667 0.00 0.00 40.77 3.96
196 197 5.523552 CCTGTTTTACACGATGAGATGCATA 59.476 40.000 0.00 0.00 37.34 3.14
197 198 6.344572 TGTTTTACACGATGAGATGCATAC 57.655 37.500 0.00 0.00 37.34 2.39
198 199 5.872070 TGTTTTACACGATGAGATGCATACA 59.128 36.000 0.00 3.60 37.34 2.29
199 200 6.370166 TGTTTTACACGATGAGATGCATACAA 59.630 34.615 0.00 0.00 37.34 2.41
200 201 6.976636 TTTACACGATGAGATGCATACAAA 57.023 33.333 0.00 0.00 37.34 2.83
201 202 7.552458 TTTACACGATGAGATGCATACAAAT 57.448 32.000 0.00 0.00 37.34 2.32
202 203 8.655651 TTTACACGATGAGATGCATACAAATA 57.344 30.769 0.00 0.00 37.34 1.40
203 204 8.655651 TTACACGATGAGATGCATACAAATAA 57.344 30.769 0.00 0.00 37.34 1.40
204 205 7.734924 ACACGATGAGATGCATACAAATAAT 57.265 32.000 0.00 0.00 37.34 1.28
205 206 8.158169 ACACGATGAGATGCATACAAATAATT 57.842 30.769 0.00 0.00 37.34 1.40
206 207 9.271828 ACACGATGAGATGCATACAAATAATTA 57.728 29.630 0.00 0.00 37.34 1.40
217 218 9.337396 TGCATACAAATAATTATTCTTCCTCGT 57.663 29.630 11.08 3.84 0.00 4.18
230 231 7.891183 ATTCTTCCTCGTATATATGTTGCAC 57.109 36.000 1.91 0.00 0.00 4.57
231 232 6.399639 TCTTCCTCGTATATATGTTGCACA 57.600 37.500 1.91 0.00 0.00 4.57
232 233 6.993079 TCTTCCTCGTATATATGTTGCACAT 58.007 36.000 1.91 6.93 42.35 3.21
233 234 6.868339 TCTTCCTCGTATATATGTTGCACATG 59.132 38.462 10.77 0.00 39.53 3.21
234 235 6.339587 TCCTCGTATATATGTTGCACATGA 57.660 37.500 0.00 1.79 39.53 3.07
235 236 6.935167 TCCTCGTATATATGTTGCACATGAT 58.065 36.000 0.00 7.46 39.53 2.45
236 237 8.062065 TCCTCGTATATATGTTGCACATGATA 57.938 34.615 0.00 6.75 39.53 2.15
237 238 8.527810 TCCTCGTATATATGTTGCACATGATAA 58.472 33.333 0.00 0.00 39.53 1.75
238 239 9.317936 CCTCGTATATATGTTGCACATGATAAT 57.682 33.333 0.00 1.60 39.53 1.28
264 265 3.973206 TTTTTGCGGGTATGAGAGAGA 57.027 42.857 0.00 0.00 0.00 3.10
265 266 4.487714 TTTTTGCGGGTATGAGAGAGAT 57.512 40.909 0.00 0.00 0.00 2.75
266 267 3.459232 TTTGCGGGTATGAGAGAGATG 57.541 47.619 0.00 0.00 0.00 2.90
267 268 1.332195 TGCGGGTATGAGAGAGATGG 58.668 55.000 0.00 0.00 0.00 3.51
268 269 1.133482 TGCGGGTATGAGAGAGATGGA 60.133 52.381 0.00 0.00 0.00 3.41
269 270 2.175202 GCGGGTATGAGAGAGATGGAT 58.825 52.381 0.00 0.00 0.00 3.41
270 271 3.245264 TGCGGGTATGAGAGAGATGGATA 60.245 47.826 0.00 0.00 0.00 2.59
271 272 3.957497 GCGGGTATGAGAGAGATGGATAT 59.043 47.826 0.00 0.00 0.00 1.63
272 273 5.133941 GCGGGTATGAGAGAGATGGATATA 58.866 45.833 0.00 0.00 0.00 0.86
273 274 5.240623 GCGGGTATGAGAGAGATGGATATAG 59.759 48.000 0.00 0.00 0.00 1.31
274 275 6.596621 CGGGTATGAGAGAGATGGATATAGA 58.403 44.000 0.00 0.00 0.00 1.98
275 276 7.230747 CGGGTATGAGAGAGATGGATATAGAT 58.769 42.308 0.00 0.00 0.00 1.98
276 277 7.723616 CGGGTATGAGAGAGATGGATATAGATT 59.276 40.741 0.00 0.00 0.00 2.40
309 310 8.925161 TGTTCAAAAAGAATACTTCAACAAGG 57.075 30.769 0.00 0.00 38.76 3.61
310 311 7.978975 TGTTCAAAAAGAATACTTCAACAAGGG 59.021 33.333 0.00 0.00 38.76 3.95
311 312 6.512297 TCAAAAAGAATACTTCAACAAGGGC 58.488 36.000 0.00 0.00 35.05 5.19
312 313 5.468540 AAAAGAATACTTCAACAAGGGCC 57.531 39.130 0.00 0.00 35.05 5.80
313 314 2.711542 AGAATACTTCAACAAGGGCCG 58.288 47.619 0.00 0.00 33.37 6.13
314 315 1.743394 GAATACTTCAACAAGGGCCGG 59.257 52.381 0.00 0.00 33.37 6.13
315 316 0.034477 ATACTTCAACAAGGGCCGGG 60.034 55.000 2.18 0.00 33.37 5.73
316 317 1.420532 TACTTCAACAAGGGCCGGGT 61.421 55.000 2.18 0.00 33.37 5.28
317 318 1.971695 CTTCAACAAGGGCCGGGTC 60.972 63.158 2.18 0.00 0.00 4.46
318 319 2.690653 CTTCAACAAGGGCCGGGTCA 62.691 60.000 2.18 0.00 0.00 4.02
319 320 2.203422 CAACAAGGGCCGGGTCAA 60.203 61.111 2.18 0.00 0.00 3.18
320 321 1.606313 CAACAAGGGCCGGGTCAAT 60.606 57.895 2.18 0.00 0.00 2.57
321 322 1.155155 AACAAGGGCCGGGTCAATT 59.845 52.632 2.18 0.00 0.00 2.32
322 323 0.471022 AACAAGGGCCGGGTCAATTT 60.471 50.000 2.18 0.00 0.00 1.82
323 324 0.898326 ACAAGGGCCGGGTCAATTTC 60.898 55.000 2.18 0.00 0.00 2.17
324 325 1.677633 AAGGGCCGGGTCAATTTCG 60.678 57.895 2.18 0.00 0.00 3.46
325 326 2.360726 GGGCCGGGTCAATTTCGT 60.361 61.111 2.18 0.00 0.00 3.85
326 327 1.974875 GGGCCGGGTCAATTTCGTT 60.975 57.895 2.18 0.00 0.00 3.85
327 328 1.211709 GGCCGGGTCAATTTCGTTG 59.788 57.895 2.18 0.00 39.25 4.10
328 329 1.211709 GCCGGGTCAATTTCGTTGG 59.788 57.895 2.18 0.00 38.39 3.77
329 330 1.238625 GCCGGGTCAATTTCGTTGGA 61.239 55.000 2.18 0.00 38.39 3.53
330 331 1.240256 CCGGGTCAATTTCGTTGGAA 58.760 50.000 0.00 0.00 38.39 3.53
331 332 1.199097 CCGGGTCAATTTCGTTGGAAG 59.801 52.381 0.00 0.00 38.39 3.46
332 333 1.199097 CGGGTCAATTTCGTTGGAAGG 59.801 52.381 0.00 0.00 38.39 3.46
333 334 2.510613 GGGTCAATTTCGTTGGAAGGA 58.489 47.619 0.00 0.00 38.39 3.36
334 335 2.888414 GGGTCAATTTCGTTGGAAGGAA 59.112 45.455 0.00 0.00 38.39 3.36
335 336 3.305131 GGGTCAATTTCGTTGGAAGGAAC 60.305 47.826 0.00 0.00 38.39 3.62
336 337 3.305131 GGTCAATTTCGTTGGAAGGAACC 60.305 47.826 0.00 0.00 38.39 3.62
337 338 3.316868 GTCAATTTCGTTGGAAGGAACCA 59.683 43.478 0.00 0.00 38.39 3.67
338 339 3.954904 TCAATTTCGTTGGAAGGAACCAA 59.045 39.130 0.00 0.00 46.02 3.67
358 359 7.838771 ACCAATAGTTCACCGAGTTTTATAC 57.161 36.000 0.00 0.00 0.00 1.47
359 360 7.388437 ACCAATAGTTCACCGAGTTTTATACA 58.612 34.615 0.00 0.00 0.00 2.29
360 361 7.332678 ACCAATAGTTCACCGAGTTTTATACAC 59.667 37.037 0.00 0.00 0.00 2.90
361 362 7.201582 CCAATAGTTCACCGAGTTTTATACACC 60.202 40.741 0.00 0.00 0.00 4.16
362 363 5.217978 AGTTCACCGAGTTTTATACACCA 57.782 39.130 0.00 0.00 0.00 4.17
363 364 5.613329 AGTTCACCGAGTTTTATACACCAA 58.387 37.500 0.00 0.00 0.00 3.67
364 365 6.235664 AGTTCACCGAGTTTTATACACCAAT 58.764 36.000 0.00 0.00 0.00 3.16
365 366 6.148811 AGTTCACCGAGTTTTATACACCAATG 59.851 38.462 0.00 0.00 0.00 2.82
366 367 5.553123 TCACCGAGTTTTATACACCAATGT 58.447 37.500 0.00 0.00 43.30 2.71
367 368 6.699366 TCACCGAGTTTTATACACCAATGTA 58.301 36.000 0.00 0.00 45.37 2.29
368 369 7.160049 TCACCGAGTTTTATACACCAATGTAA 58.840 34.615 0.00 0.00 44.47 2.41
369 370 7.332430 TCACCGAGTTTTATACACCAATGTAAG 59.668 37.037 0.00 0.00 44.47 2.34
370 371 7.332430 CACCGAGTTTTATACACCAATGTAAGA 59.668 37.037 0.00 0.00 44.47 2.10
371 372 8.044908 ACCGAGTTTTATACACCAATGTAAGAT 58.955 33.333 0.00 0.00 44.47 2.40
372 373 9.537192 CCGAGTTTTATACACCAATGTAAGATA 57.463 33.333 0.00 0.00 44.47 1.98
381 382 9.730705 ATACACCAATGTAAGATATCTCCATTG 57.269 33.333 29.69 29.69 44.47 2.82
382 383 6.488006 ACACCAATGTAAGATATCTCCATTGC 59.512 38.462 30.43 14.22 40.32 3.56
383 384 6.713903 CACCAATGTAAGATATCTCCATTGCT 59.286 38.462 30.43 22.84 40.32 3.91
384 385 7.879677 CACCAATGTAAGATATCTCCATTGCTA 59.120 37.037 30.43 11.23 40.32 3.49
385 386 8.439971 ACCAATGTAAGATATCTCCATTGCTAA 58.560 33.333 30.43 7.62 40.32 3.09
386 387 9.288576 CCAATGTAAGATATCTCCATTGCTAAA 57.711 33.333 30.43 10.06 40.32 1.85
407 408 4.605640 AAAAGCTAAAAAGCTCATGGCA 57.394 36.364 0.00 0.00 45.54 4.92
408 409 4.605640 AAAGCTAAAAAGCTCATGGCAA 57.394 36.364 0.00 0.00 45.54 4.52
409 410 3.582714 AGCTAAAAAGCTCATGGCAAC 57.417 42.857 8.58 0.00 42.12 4.17
410 411 2.095059 AGCTAAAAAGCTCATGGCAACG 60.095 45.455 8.58 0.00 42.12 4.10
411 412 2.253603 CTAAAAAGCTCATGGCAACGC 58.746 47.619 8.58 0.00 44.79 4.84
412 413 0.388659 AAAAAGCTCATGGCAACGCA 59.611 45.000 8.58 0.00 44.79 5.24
413 414 0.318955 AAAAGCTCATGGCAACGCAC 60.319 50.000 8.58 0.00 44.79 5.34
414 415 2.462255 AAAGCTCATGGCAACGCACG 62.462 55.000 8.58 0.00 44.79 5.34
415 416 3.422303 GCTCATGGCAACGCACGA 61.422 61.111 0.00 0.00 41.35 4.35
416 417 2.780643 CTCATGGCAACGCACGAG 59.219 61.111 0.00 0.00 42.51 4.18
417 418 3.372676 CTCATGGCAACGCACGAGC 62.373 63.158 0.00 0.00 42.51 5.03
418 419 3.725459 CATGGCAACGCACGAGCA 61.725 61.111 5.50 0.00 42.27 4.26
419 420 2.747460 ATGGCAACGCACGAGCAT 60.747 55.556 5.50 0.00 42.27 3.79
420 421 2.334946 ATGGCAACGCACGAGCATT 61.335 52.632 5.50 0.00 42.27 3.56
421 422 2.202349 GGCAACGCACGAGCATTC 60.202 61.111 5.50 0.00 42.27 2.67
422 423 2.680913 GGCAACGCACGAGCATTCT 61.681 57.895 5.50 0.00 42.27 2.40
423 424 1.358725 GGCAACGCACGAGCATTCTA 61.359 55.000 5.50 0.00 42.27 2.10
424 425 0.247301 GCAACGCACGAGCATTCTAC 60.247 55.000 5.50 0.00 42.27 2.59
425 426 1.350193 CAACGCACGAGCATTCTACT 58.650 50.000 5.50 0.00 42.27 2.57
426 427 2.526077 CAACGCACGAGCATTCTACTA 58.474 47.619 5.50 0.00 42.27 1.82
427 428 2.476873 ACGCACGAGCATTCTACTAG 57.523 50.000 5.50 0.00 42.27 2.57
430 431 3.002451 ACGCACGAGCATTCTACTAGTAG 59.998 47.826 21.87 21.87 42.27 2.57
559 561 8.611051 AATCTCTTAGTACCTATTTCACCAGT 57.389 34.615 0.00 0.00 0.00 4.00
560 562 8.611051 ATCTCTTAGTACCTATTTCACCAGTT 57.389 34.615 0.00 0.00 0.00 3.16
561 563 8.431910 TCTCTTAGTACCTATTTCACCAGTTT 57.568 34.615 0.00 0.00 0.00 2.66
562 564 9.537852 TCTCTTAGTACCTATTTCACCAGTTTA 57.462 33.333 0.00 0.00 0.00 2.01
634 636 4.952071 TTTTGCATCAAGATTTGTCCCA 57.048 36.364 0.00 0.00 0.00 4.37
649 651 9.872684 AGATTTGTCCCATATGATTGTCTTATT 57.127 29.630 3.65 0.00 0.00 1.40
753 755 0.233332 GATATGCTCTGCGCCGTTTC 59.767 55.000 4.18 0.00 38.05 2.78
769 771 0.583438 TTTCGTCGTCTCGTCTCGTT 59.417 50.000 0.00 0.00 0.00 3.85
777 779 0.795085 TCTCGTCTCGTTTCCGTCTC 59.205 55.000 0.00 0.00 35.01 3.36
781 783 0.454117 GTCTCGTTTCCGTCTCCGTC 60.454 60.000 0.00 0.00 35.01 4.79
782 784 0.604780 TCTCGTTTCCGTCTCCGTCT 60.605 55.000 0.00 0.00 35.01 4.18
789 791 2.021355 TCCGTCTCCGTCTAGTCTTC 57.979 55.000 0.00 0.00 0.00 2.87
796 798 0.733729 CCGTCTAGTCTTCTCCACCG 59.266 60.000 0.00 0.00 0.00 4.94
804 806 0.251653 TCTTCTCCACCGGCACTACT 60.252 55.000 0.00 0.00 0.00 2.57
805 807 1.005097 TCTTCTCCACCGGCACTACTA 59.995 52.381 0.00 0.00 0.00 1.82
842 844 1.073923 TCTCCAGTTTTTGCTCCCCTC 59.926 52.381 0.00 0.00 0.00 4.30
865 868 1.341209 GACTCCAAAAGCACCAAAGGG 59.659 52.381 0.00 0.00 41.29 3.95
927 934 1.144503 AGTCCATTGCCATCTCCATCC 59.855 52.381 0.00 0.00 0.00 3.51
1003 1010 2.045280 CTACGAGGGAGAGGCATGG 58.955 63.158 0.00 0.00 0.00 3.66
1023 1030 2.015587 GGCTCCAGATCTTTGCTCAAG 58.984 52.381 0.00 0.00 0.00 3.02
1068 1075 1.338020 CTTGCAGGGTCAGTGTTTTCC 59.662 52.381 0.00 0.00 0.00 3.13
1114 1121 7.199766 TGCATTTATTTTGGGCTCTTATTACG 58.800 34.615 0.00 0.00 0.00 3.18
1145 1152 0.316841 TTTGTTCCTGAAATGGCGCC 59.683 50.000 22.73 22.73 0.00 6.53
1244 1251 3.018149 GACTCGAGGGTGTTACTCATCT 58.982 50.000 18.41 0.00 34.66 2.90
1269 1276 1.882623 CACTTTTGGGGCTGAAGTCTC 59.117 52.381 0.00 0.00 31.63 3.36
1271 1278 2.108952 ACTTTTGGGGCTGAAGTCTCAT 59.891 45.455 0.00 0.00 25.81 2.90
1275 1282 1.144936 GGGCTGAAGTCTCATCCGG 59.855 63.158 0.00 0.00 38.54 5.14
1282 1289 4.502259 GCTGAAGTCTCATCCGGTATCATT 60.502 45.833 0.00 0.00 0.00 2.57
1284 1291 3.924918 AGTCTCATCCGGTATCATTCG 57.075 47.619 0.00 0.00 0.00 3.34
1300 1307 4.755411 TCATTCGTGTAAGAGGAACATCC 58.245 43.478 0.00 0.00 36.58 3.51
1325 1332 8.454106 CCCTGATGATATAATCCGAACATTTTC 58.546 37.037 0.00 0.00 0.00 2.29
1394 1402 4.203618 GCGTCTTGGCCTTACCTC 57.796 61.111 3.32 0.00 40.22 3.85
1476 1484 3.855689 GTGTGGGATCCTCACATTTTG 57.144 47.619 27.99 0.00 45.32 2.44
1546 1554 1.226018 GCGTGCGATTGTAGGTTGC 60.226 57.895 0.00 0.00 0.00 4.17
1578 1586 9.918630 CCATTCTCATTGTGAAGATTAGTTTTT 57.081 29.630 7.20 0.00 0.00 1.94
1592 1600 6.766467 AGATTAGTTTTTCGTTGTCTGGTCTT 59.234 34.615 0.00 0.00 0.00 3.01
1625 1633 2.929641 TGTCAGCTGTTTCACATTCCA 58.070 42.857 14.67 0.00 0.00 3.53
1696 1704 5.423931 ACATTTCCCTGGTGTTTTTGTACTT 59.576 36.000 0.00 0.00 0.00 2.24
1708 1716 1.263356 TTGTACTTCCTCTGTCCCGG 58.737 55.000 0.00 0.00 0.00 5.73
1748 1756 5.717078 TGTGAGGTATCTAGACACGTTTT 57.283 39.130 0.00 0.00 34.72 2.43
1867 1875 8.682936 AAATAAAATATGGGAGTGCTCTACTG 57.317 34.615 0.00 0.00 40.53 2.74
2007 2015 9.823647 ACTCCTATATGTTTGTTCTGATTGTAG 57.176 33.333 0.00 0.00 0.00 2.74
2418 2426 7.509141 TCTTTTGTAATGTCAAGCATCTTGA 57.491 32.000 5.25 5.25 36.67 3.02
2481 2489 6.025896 GTGTCAGCATCATGTTTATTCACAG 58.974 40.000 0.00 0.00 0.00 3.66
2566 2575 2.603953 GCTTCAAGGCTGAGAAATTGC 58.396 47.619 4.50 1.84 31.69 3.56
2587 2596 1.006813 TGCCCACCATAAATCAGGGT 58.993 50.000 0.00 0.00 43.87 4.34
2682 2691 6.936279 TCTATATTGCATAGGACTGGCTAAC 58.064 40.000 0.00 0.00 0.00 2.34
2817 2826 6.112734 AGCATGGTTCAGAATTATTACACGA 58.887 36.000 0.00 0.00 0.00 4.35
2818 2827 6.767902 AGCATGGTTCAGAATTATTACACGAT 59.232 34.615 0.00 0.00 0.00 3.73
2824 2833 6.895607 TCAGAATTATTACACGATTTGCGA 57.104 33.333 0.00 0.00 44.57 5.10
2964 2973 7.532199 TCAGTAATCATGGTATACTGACCCTA 58.468 38.462 21.71 8.65 46.34 3.53
2977 2986 2.244769 CTGACCCTAAAATCCCCATGGT 59.755 50.000 11.73 0.00 0.00 3.55
3294 3303 3.778265 ACCCTGGTTTCATGCACTAATT 58.222 40.909 0.00 0.00 0.00 1.40
3338 3347 0.528924 TTTCATGCTGCTCACATGCC 59.471 50.000 0.00 0.00 43.71 4.40
3379 3388 3.702045 CCAGTTTTGTACTTGGGGTCAAA 59.298 43.478 0.00 0.00 33.85 2.69
3447 3457 4.764679 TTTTGCTGCGTATTCAGATGTT 57.235 36.364 0.00 0.00 36.19 2.71
3525 3535 5.238214 GCCACTGGTTCTTGATTGATATCTC 59.762 44.000 3.98 0.00 0.00 2.75
3618 3628 4.662468 TGCTGTTTCAAAATGGCAAGTA 57.338 36.364 0.00 0.00 0.00 2.24
3638 3648 5.911752 AGTAGGCTATTGTTCTGATGTCTG 58.088 41.667 0.00 0.00 0.00 3.51
3656 3666 3.944015 GTCTGGTATCGTGTACTGTAGGT 59.056 47.826 0.00 0.00 0.00 3.08
3671 3681 4.184629 CTGTAGGTTGGCAAGTCATCTAC 58.815 47.826 0.00 8.57 0.00 2.59
3796 3808 3.213206 TCAAAAGAGCAGAAGAAGGCA 57.787 42.857 0.00 0.00 0.00 4.75
3816 3828 1.270625 ACCGAAATGCTCCGAAGAACA 60.271 47.619 0.00 0.00 0.00 3.18
3817 3829 1.394917 CCGAAATGCTCCGAAGAACAG 59.605 52.381 0.00 0.00 0.00 3.16
3852 3864 8.686334 ACTGAAAGATTCAAAAGAACTAAAGCA 58.314 29.630 0.00 0.00 39.58 3.91
3906 3918 4.631131 TCACTGAAAGATCGAAAAGAGCA 58.369 39.130 0.00 0.00 37.82 4.26
3912 3924 1.484240 AGATCGAAAAGAGCAGGAGGG 59.516 52.381 0.00 0.00 37.82 4.30
3946 3958 2.035449 TGAACGTCAACCGAAGATGAGT 59.965 45.455 0.00 0.00 40.70 3.41
3948 3960 1.336887 ACGTCAACCGAAGATGAGTGG 60.337 52.381 0.00 0.00 40.70 4.00
4087 4099 4.143721 CGCAGCTTTATAATCTTCGACGAG 60.144 45.833 0.00 0.00 0.00 4.18
4304 4316 1.229975 TTCTGACCTGTCGCGTCGTA 61.230 55.000 5.77 0.00 32.68 3.43
4343 4355 0.466543 AGTGGTCGTTTGCAGGTACA 59.533 50.000 0.00 0.00 0.00 2.90
4383 4395 0.820871 TGGTGGTGTTTTTGGAGCAC 59.179 50.000 0.00 0.00 39.38 4.40
4385 4397 1.202405 GGTGGTGTTTTTGGAGCACAG 60.202 52.381 0.00 0.00 41.39 3.66
4413 4428 7.233757 ACCTTATTATTAGCTGGAAGAGTCGAT 59.766 37.037 0.00 0.00 34.07 3.59
4493 4508 5.422214 TCCTAAAAACTCTAAGCTCCCAG 57.578 43.478 0.00 0.00 0.00 4.45
4494 4509 4.225267 TCCTAAAAACTCTAAGCTCCCAGG 59.775 45.833 0.00 0.00 0.00 4.45
4495 4510 4.225267 CCTAAAAACTCTAAGCTCCCAGGA 59.775 45.833 0.00 0.00 0.00 3.86
4496 4511 4.724279 AAAAACTCTAAGCTCCCAGGAA 57.276 40.909 0.00 0.00 0.00 3.36
4497 4512 4.724279 AAAACTCTAAGCTCCCAGGAAA 57.276 40.909 0.00 0.00 0.00 3.13
4498 4513 3.990959 AACTCTAAGCTCCCAGGAAAG 57.009 47.619 0.00 0.00 0.00 2.62
4499 4514 1.557371 ACTCTAAGCTCCCAGGAAAGC 59.443 52.381 5.81 5.81 38.84 3.51
4500 4515 0.912486 TCTAAGCTCCCAGGAAAGCC 59.088 55.000 9.56 0.00 39.39 4.35
4501 4516 0.620556 CTAAGCTCCCAGGAAAGCCA 59.379 55.000 9.56 0.00 39.39 4.75
4502 4517 0.620556 TAAGCTCCCAGGAAAGCCAG 59.379 55.000 9.56 0.00 39.39 4.85
4503 4518 1.430369 AAGCTCCCAGGAAAGCCAGT 61.430 55.000 9.56 0.00 39.39 4.00
4504 4519 1.075659 GCTCCCAGGAAAGCCAGTT 59.924 57.895 2.99 0.00 36.29 3.16
4505 4520 1.246737 GCTCCCAGGAAAGCCAGTTG 61.247 60.000 2.99 0.00 36.29 3.16
4506 4521 0.610232 CTCCCAGGAAAGCCAGTTGG 60.610 60.000 0.00 0.00 36.29 3.77
4507 4522 1.153756 CCCAGGAAAGCCAGTTGGT 59.846 57.895 0.00 0.00 37.57 3.67
4508 4523 1.181098 CCCAGGAAAGCCAGTTGGTG 61.181 60.000 0.00 0.00 37.57 4.17
4509 4524 0.178992 CCAGGAAAGCCAGTTGGTGA 60.179 55.000 0.00 0.00 37.57 4.02
4510 4525 1.242076 CAGGAAAGCCAGTTGGTGAG 58.758 55.000 0.00 0.00 37.57 3.51
4511 4526 1.140312 AGGAAAGCCAGTTGGTGAGA 58.860 50.000 0.00 0.00 37.57 3.27
4512 4527 1.072965 AGGAAAGCCAGTTGGTGAGAG 59.927 52.381 0.00 0.00 37.57 3.20
4513 4528 0.877743 GAAAGCCAGTTGGTGAGAGC 59.122 55.000 0.00 0.00 37.57 4.09
4514 4529 0.183492 AAAGCCAGTTGGTGAGAGCA 59.817 50.000 0.00 0.00 37.57 4.26
4515 4530 0.183492 AAGCCAGTTGGTGAGAGCAA 59.817 50.000 0.00 0.00 37.57 3.91
4526 4541 6.801539 TTGGTGAGAGCAACTATTTAACTG 57.198 37.500 0.00 0.00 29.68 3.16
4527 4542 5.865085 TGGTGAGAGCAACTATTTAACTGT 58.135 37.500 0.00 0.00 31.28 3.55
4528 4543 6.296026 TGGTGAGAGCAACTATTTAACTGTT 58.704 36.000 0.00 0.00 31.28 3.16
4529 4544 7.446769 TGGTGAGAGCAACTATTTAACTGTTA 58.553 34.615 0.00 0.00 31.28 2.41
4530 4545 7.386848 TGGTGAGAGCAACTATTTAACTGTTAC 59.613 37.037 0.00 0.00 31.28 2.50
4531 4546 7.148457 GGTGAGAGCAACTATTTAACTGTTACC 60.148 40.741 0.00 0.00 0.00 2.85
4532 4547 7.603024 GTGAGAGCAACTATTTAACTGTTACCT 59.397 37.037 0.00 0.00 0.00 3.08
4533 4548 8.154856 TGAGAGCAACTATTTAACTGTTACCTT 58.845 33.333 0.00 0.00 0.00 3.50
4534 4549 8.549338 AGAGCAACTATTTAACTGTTACCTTC 57.451 34.615 0.00 0.00 0.00 3.46
4535 4550 8.376270 AGAGCAACTATTTAACTGTTACCTTCT 58.624 33.333 0.00 0.00 0.00 2.85
4536 4551 9.649167 GAGCAACTATTTAACTGTTACCTTCTA 57.351 33.333 0.00 0.00 0.00 2.10
4537 4552 9.433153 AGCAACTATTTAACTGTTACCTTCTAC 57.567 33.333 0.00 0.00 0.00 2.59
4538 4553 9.211485 GCAACTATTTAACTGTTACCTTCTACA 57.789 33.333 0.00 0.00 0.00 2.74
4540 4555 8.999220 ACTATTTAACTGTTACCTTCTACAGC 57.001 34.615 0.00 0.00 44.34 4.40
4541 4556 6.963049 ATTTAACTGTTACCTTCTACAGCG 57.037 37.500 0.00 0.00 44.34 5.18
4542 4557 3.314541 AACTGTTACCTTCTACAGCGG 57.685 47.619 0.00 0.00 44.34 5.52
4543 4558 2.245582 ACTGTTACCTTCTACAGCGGT 58.754 47.619 0.00 0.00 44.34 5.68
4544 4559 2.230750 ACTGTTACCTTCTACAGCGGTC 59.769 50.000 0.00 0.00 44.34 4.79
4545 4560 2.230508 CTGTTACCTTCTACAGCGGTCA 59.769 50.000 0.00 0.00 35.79 4.02
4546 4561 2.029649 TGTTACCTTCTACAGCGGTCAC 60.030 50.000 0.00 0.00 32.36 3.67
4547 4562 2.211250 TACCTTCTACAGCGGTCACT 57.789 50.000 0.00 0.00 32.36 3.41
4548 4563 1.339097 ACCTTCTACAGCGGTCACTT 58.661 50.000 0.00 0.00 0.00 3.16
4549 4564 1.272769 ACCTTCTACAGCGGTCACTTC 59.727 52.381 0.00 0.00 0.00 3.01
4550 4565 1.404315 CCTTCTACAGCGGTCACTTCC 60.404 57.143 0.00 0.00 0.00 3.46
4551 4566 0.606604 TTCTACAGCGGTCACTTCCC 59.393 55.000 0.00 0.00 0.00 3.97
4552 4567 0.251653 TCTACAGCGGTCACTTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
4553 4568 0.108615 CTACAGCGGTCACTTCCCTG 60.109 60.000 0.00 0.00 34.38 4.45
4554 4569 1.541310 TACAGCGGTCACTTCCCTGG 61.541 60.000 0.00 0.00 33.33 4.45
4555 4570 4.021925 AGCGGTCACTTCCCTGGC 62.022 66.667 0.00 0.00 0.00 4.85
4574 4589 3.767230 CGCCGCAACTCTCGTGTG 61.767 66.667 0.00 0.00 0.00 3.82
4575 4590 4.077188 GCCGCAACTCTCGTGTGC 62.077 66.667 0.00 0.00 0.00 4.57
4576 4591 3.767230 CCGCAACTCTCGTGTGCG 61.767 66.667 10.12 10.12 46.83 5.34
4577 4592 3.767230 CGCAACTCTCGTGTGCGG 61.767 66.667 9.27 0.00 44.06 5.69
4578 4593 3.414700 GCAACTCTCGTGTGCGGG 61.415 66.667 0.00 0.00 40.60 6.13
4579 4594 2.338620 CAACTCTCGTGTGCGGGA 59.661 61.111 0.00 0.00 46.56 5.14
4591 4606 2.562912 GCGGGATGCACACAACTG 59.437 61.111 0.00 0.00 45.45 3.16
4592 4607 2.981560 GCGGGATGCACACAACTGG 61.982 63.158 0.00 0.00 45.45 4.00
4593 4608 1.302431 CGGGATGCACACAACTGGA 60.302 57.895 0.00 0.00 0.00 3.86
4594 4609 1.300971 CGGGATGCACACAACTGGAG 61.301 60.000 0.00 0.00 0.00 3.86
4595 4610 1.589716 GGGATGCACACAACTGGAGC 61.590 60.000 0.00 0.00 0.00 4.70
4596 4611 0.890542 GGATGCACACAACTGGAGCA 60.891 55.000 0.00 0.00 37.08 4.26
4597 4612 1.171308 GATGCACACAACTGGAGCAT 58.829 50.000 0.00 0.00 42.55 3.79
4598 4613 0.885879 ATGCACACAACTGGAGCATG 59.114 50.000 0.00 0.00 40.03 4.06
4599 4614 0.179023 TGCACACAACTGGAGCATGA 60.179 50.000 0.00 0.00 30.32 3.07
4600 4615 0.953727 GCACACAACTGGAGCATGAA 59.046 50.000 0.00 0.00 0.00 2.57
4601 4616 1.542915 GCACACAACTGGAGCATGAAT 59.457 47.619 0.00 0.00 0.00 2.57
4602 4617 2.029649 GCACACAACTGGAGCATGAATT 60.030 45.455 0.00 0.00 0.00 2.17
4603 4618 3.553508 GCACACAACTGGAGCATGAATTT 60.554 43.478 0.00 0.00 0.00 1.82
4604 4619 4.624015 CACACAACTGGAGCATGAATTTT 58.376 39.130 0.00 0.00 0.00 1.82
4605 4620 5.051816 CACACAACTGGAGCATGAATTTTT 58.948 37.500 0.00 0.00 0.00 1.94
4606 4621 5.176223 CACACAACTGGAGCATGAATTTTTC 59.824 40.000 0.00 0.00 0.00 2.29
4607 4622 4.687483 CACAACTGGAGCATGAATTTTTCC 59.313 41.667 0.00 0.00 0.00 3.13
4608 4623 4.590222 ACAACTGGAGCATGAATTTTTCCT 59.410 37.500 0.00 0.00 0.00 3.36
4609 4624 4.796038 ACTGGAGCATGAATTTTTCCTG 57.204 40.909 0.00 0.18 34.29 3.86
4610 4625 4.154942 ACTGGAGCATGAATTTTTCCTGT 58.845 39.130 0.00 0.78 35.91 4.00
4611 4626 4.590222 ACTGGAGCATGAATTTTTCCTGTT 59.410 37.500 0.00 0.00 36.94 3.16
4612 4627 5.070847 ACTGGAGCATGAATTTTTCCTGTTT 59.929 36.000 0.00 0.00 36.94 2.83
4613 4628 5.540911 TGGAGCATGAATTTTTCCTGTTTC 58.459 37.500 0.00 0.00 0.00 2.78
4614 4629 5.305128 TGGAGCATGAATTTTTCCTGTTTCT 59.695 36.000 0.00 0.00 0.00 2.52
4615 4630 5.636543 GGAGCATGAATTTTTCCTGTTTCTG 59.363 40.000 0.00 0.00 0.00 3.02
4616 4631 4.992951 AGCATGAATTTTTCCTGTTTCTGC 59.007 37.500 0.00 0.00 0.00 4.26
4617 4632 4.751098 GCATGAATTTTTCCTGTTTCTGCA 59.249 37.500 0.00 0.00 0.00 4.41
4618 4633 5.333568 GCATGAATTTTTCCTGTTTCTGCAC 60.334 40.000 0.00 0.00 0.00 4.57
4619 4634 4.358851 TGAATTTTTCCTGTTTCTGCACG 58.641 39.130 0.00 0.00 0.00 5.34
4620 4635 2.202295 TTTTTCCTGTTTCTGCACGC 57.798 45.000 0.00 0.00 0.00 5.34
4621 4636 0.028770 TTTTCCTGTTTCTGCACGCG 59.971 50.000 3.53 3.53 0.00 6.01
4622 4637 1.092921 TTTCCTGTTTCTGCACGCGT 61.093 50.000 5.58 5.58 0.00 6.01
4623 4638 1.092921 TTCCTGTTTCTGCACGCGTT 61.093 50.000 10.22 0.00 0.00 4.84
4624 4639 1.092921 TCCTGTTTCTGCACGCGTTT 61.093 50.000 10.22 0.00 0.00 3.60
4625 4640 0.248458 CCTGTTTCTGCACGCGTTTT 60.248 50.000 10.22 0.00 0.00 2.43
4626 4641 1.544686 CTGTTTCTGCACGCGTTTTT 58.455 45.000 10.22 0.00 0.00 1.94
4627 4642 1.252524 CTGTTTCTGCACGCGTTTTTG 59.747 47.619 10.22 0.00 0.00 2.44
4628 4643 0.570272 GTTTCTGCACGCGTTTTTGG 59.430 50.000 10.22 0.00 0.00 3.28
4629 4644 0.526524 TTTCTGCACGCGTTTTTGGG 60.527 50.000 10.22 0.00 0.00 4.12
4630 4645 1.658686 TTCTGCACGCGTTTTTGGGT 61.659 50.000 10.22 0.00 35.10 4.51
4631 4646 1.226831 CTGCACGCGTTTTTGGGTT 60.227 52.632 10.22 0.00 32.02 4.11
4632 4647 0.804156 CTGCACGCGTTTTTGGGTTT 60.804 50.000 10.22 0.00 32.02 3.27
4633 4648 0.389948 TGCACGCGTTTTTGGGTTTT 60.390 45.000 10.22 0.00 32.02 2.43
4634 4649 1.135199 TGCACGCGTTTTTGGGTTTTA 60.135 42.857 10.22 0.00 32.02 1.52
4635 4650 2.128821 GCACGCGTTTTTGGGTTTTAT 58.871 42.857 10.22 0.00 32.02 1.40
4636 4651 2.540516 GCACGCGTTTTTGGGTTTTATT 59.459 40.909 10.22 0.00 32.02 1.40
4637 4652 3.001431 GCACGCGTTTTTGGGTTTTATTT 59.999 39.130 10.22 0.00 32.02 1.40
4638 4653 4.509891 CACGCGTTTTTGGGTTTTATTTG 58.490 39.130 10.22 0.00 32.02 2.32
4639 4654 4.267928 CACGCGTTTTTGGGTTTTATTTGA 59.732 37.500 10.22 0.00 32.02 2.69
4640 4655 5.050702 CACGCGTTTTTGGGTTTTATTTGAT 60.051 36.000 10.22 0.00 32.02 2.57
4641 4656 5.524281 ACGCGTTTTTGGGTTTTATTTGATT 59.476 32.000 5.58 0.00 0.00 2.57
4642 4657 6.037281 ACGCGTTTTTGGGTTTTATTTGATTT 59.963 30.769 5.58 0.00 0.00 2.17
4643 4658 6.907748 CGCGTTTTTGGGTTTTATTTGATTTT 59.092 30.769 0.00 0.00 0.00 1.82
4644 4659 7.429630 CGCGTTTTTGGGTTTTATTTGATTTTT 59.570 29.630 0.00 0.00 0.00 1.94
4670 4685 8.800370 TTTTTGAATTTAGGCTCTTTGGTTTT 57.200 26.923 0.00 0.00 0.00 2.43
4671 4686 8.800370 TTTTGAATTTAGGCTCTTTGGTTTTT 57.200 26.923 0.00 0.00 0.00 1.94
4672 4687 7.784633 TTGAATTTAGGCTCTTTGGTTTTTG 57.215 32.000 0.00 0.00 0.00 2.44
4673 4688 6.883744 TGAATTTAGGCTCTTTGGTTTTTGT 58.116 32.000 0.00 0.00 0.00 2.83
4674 4689 7.334858 TGAATTTAGGCTCTTTGGTTTTTGTT 58.665 30.769 0.00 0.00 0.00 2.83
4675 4690 7.826744 TGAATTTAGGCTCTTTGGTTTTTGTTT 59.173 29.630 0.00 0.00 0.00 2.83
4676 4691 6.976636 TTTAGGCTCTTTGGTTTTTGTTTG 57.023 33.333 0.00 0.00 0.00 2.93
4677 4692 3.872696 AGGCTCTTTGGTTTTTGTTTGG 58.127 40.909 0.00 0.00 0.00 3.28
4678 4693 3.263170 AGGCTCTTTGGTTTTTGTTTGGT 59.737 39.130 0.00 0.00 0.00 3.67
4679 4694 3.621268 GGCTCTTTGGTTTTTGTTTGGTC 59.379 43.478 0.00 0.00 0.00 4.02
4680 4695 4.503910 GCTCTTTGGTTTTTGTTTGGTCT 58.496 39.130 0.00 0.00 0.00 3.85
4681 4696 4.329801 GCTCTTTGGTTTTTGTTTGGTCTG 59.670 41.667 0.00 0.00 0.00 3.51
4682 4697 4.249661 TCTTTGGTTTTTGTTTGGTCTGC 58.750 39.130 0.00 0.00 0.00 4.26
4683 4698 3.685139 TTGGTTTTTGTTTGGTCTGCA 57.315 38.095 0.00 0.00 0.00 4.41
4684 4699 2.966050 TGGTTTTTGTTTGGTCTGCAC 58.034 42.857 0.00 0.00 0.00 4.57
4685 4700 2.300152 TGGTTTTTGTTTGGTCTGCACA 59.700 40.909 0.00 0.00 0.00 4.57
4686 4701 2.929398 GGTTTTTGTTTGGTCTGCACAG 59.071 45.455 0.00 0.00 0.00 3.66
4687 4702 3.584834 GTTTTTGTTTGGTCTGCACAGT 58.415 40.909 0.00 0.00 0.00 3.55
4688 4703 3.951775 TTTTGTTTGGTCTGCACAGTT 57.048 38.095 0.00 0.00 0.00 3.16
4689 4704 3.951775 TTTGTTTGGTCTGCACAGTTT 57.048 38.095 0.00 0.00 0.00 2.66
4690 4705 3.951775 TTGTTTGGTCTGCACAGTTTT 57.048 38.095 0.00 0.00 0.00 2.43
4691 4706 3.229276 TGTTTGGTCTGCACAGTTTTG 57.771 42.857 0.00 0.00 0.00 2.44
4692 4707 2.094286 TGTTTGGTCTGCACAGTTTTGG 60.094 45.455 0.00 0.00 0.00 3.28
4693 4708 1.110442 TTGGTCTGCACAGTTTTGGG 58.890 50.000 0.00 0.00 0.00 4.12
4694 4709 0.754957 TGGTCTGCACAGTTTTGGGG 60.755 55.000 0.00 0.00 0.00 4.96
4695 4710 0.755327 GGTCTGCACAGTTTTGGGGT 60.755 55.000 0.00 0.00 0.00 4.95
4696 4711 1.111277 GTCTGCACAGTTTTGGGGTT 58.889 50.000 0.00 0.00 0.00 4.11
4697 4712 1.480545 GTCTGCACAGTTTTGGGGTTT 59.519 47.619 0.00 0.00 0.00 3.27
4698 4713 2.093711 GTCTGCACAGTTTTGGGGTTTT 60.094 45.455 0.00 0.00 0.00 2.43
4699 4714 3.131400 GTCTGCACAGTTTTGGGGTTTTA 59.869 43.478 0.00 0.00 0.00 1.52
4700 4715 3.964031 TCTGCACAGTTTTGGGGTTTTAT 59.036 39.130 0.00 0.00 0.00 1.40
4701 4716 4.038642 TCTGCACAGTTTTGGGGTTTTATC 59.961 41.667 0.00 0.00 0.00 1.75
4702 4717 3.964031 TGCACAGTTTTGGGGTTTTATCT 59.036 39.130 0.00 0.00 0.00 1.98
4703 4718 4.202202 TGCACAGTTTTGGGGTTTTATCTG 60.202 41.667 0.00 0.00 0.00 2.90
4704 4719 4.038642 GCACAGTTTTGGGGTTTTATCTGA 59.961 41.667 0.00 0.00 0.00 3.27
4705 4720 5.279456 GCACAGTTTTGGGGTTTTATCTGAT 60.279 40.000 0.00 0.00 0.00 2.90
4706 4721 6.741240 GCACAGTTTTGGGGTTTTATCTGATT 60.741 38.462 0.00 0.00 0.00 2.57
4707 4722 7.216494 CACAGTTTTGGGGTTTTATCTGATTT 58.784 34.615 0.00 0.00 0.00 2.17
4708 4723 7.384932 CACAGTTTTGGGGTTTTATCTGATTTC 59.615 37.037 0.00 0.00 0.00 2.17
4709 4724 6.873605 CAGTTTTGGGGTTTTATCTGATTTCC 59.126 38.462 0.00 0.00 0.00 3.13
4710 4725 6.787458 AGTTTTGGGGTTTTATCTGATTTCCT 59.213 34.615 0.00 0.00 0.00 3.36
4711 4726 7.292356 AGTTTTGGGGTTTTATCTGATTTCCTT 59.708 33.333 0.00 0.00 0.00 3.36
4712 4727 6.603940 TTGGGGTTTTATCTGATTTCCTTG 57.396 37.500 0.00 0.00 0.00 3.61
4713 4728 5.022787 TGGGGTTTTATCTGATTTCCTTGG 58.977 41.667 0.00 0.00 0.00 3.61
4714 4729 5.023452 GGGGTTTTATCTGATTTCCTTGGT 58.977 41.667 0.00 0.00 0.00 3.67
4715 4730 5.483937 GGGGTTTTATCTGATTTCCTTGGTT 59.516 40.000 0.00 0.00 0.00 3.67
4716 4731 6.013725 GGGGTTTTATCTGATTTCCTTGGTTT 60.014 38.462 0.00 0.00 0.00 3.27
4717 4732 7.450074 GGGTTTTATCTGATTTCCTTGGTTTT 58.550 34.615 0.00 0.00 0.00 2.43
4718 4733 7.936847 GGGTTTTATCTGATTTCCTTGGTTTTT 59.063 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.230472 ACATGTAGCATTGTTGTCACTTAGA 58.770 36.000 0.00 0.00 0.00 2.10
1 2 6.486253 ACATGTAGCATTGTTGTCACTTAG 57.514 37.500 0.00 0.00 0.00 2.18
2 3 6.667370 CAACATGTAGCATTGTTGTCACTTA 58.333 36.000 0.00 0.00 44.79 2.24
3 4 5.522456 CAACATGTAGCATTGTTGTCACTT 58.478 37.500 0.00 0.00 44.79 3.16
4 5 5.112220 CAACATGTAGCATTGTTGTCACT 57.888 39.130 0.00 0.00 44.79 3.41
10 11 5.067674 AGACAACACAACATGTAGCATTGTT 59.932 36.000 15.52 10.51 42.31 2.83
11 12 4.580167 AGACAACACAACATGTAGCATTGT 59.420 37.500 14.73 14.73 42.31 2.71
12 13 5.112220 AGACAACACAACATGTAGCATTG 57.888 39.130 0.00 5.08 42.31 2.82
13 14 5.772825 AAGACAACACAACATGTAGCATT 57.227 34.783 0.00 0.00 42.31 3.56
14 15 5.772825 AAAGACAACACAACATGTAGCAT 57.227 34.783 0.00 0.00 42.31 3.79
15 16 5.574891 AAAAGACAACACAACATGTAGCA 57.425 34.783 0.00 0.00 42.31 3.49
71 72 9.941325 AGCGATCAATTTTATTATCTCTGATCT 57.059 29.630 7.36 0.00 36.92 2.75
73 74 9.160496 GGAGCGATCAATTTTATTATCTCTGAT 57.840 33.333 1.84 0.00 0.00 2.90
74 75 7.329471 CGGAGCGATCAATTTTATTATCTCTGA 59.671 37.037 1.84 0.00 0.00 3.27
75 76 7.412346 CCGGAGCGATCAATTTTATTATCTCTG 60.412 40.741 1.84 0.00 0.00 3.35
76 77 6.591834 CCGGAGCGATCAATTTTATTATCTCT 59.408 38.462 1.84 0.00 0.00 3.10
77 78 6.590292 TCCGGAGCGATCAATTTTATTATCTC 59.410 38.462 0.00 0.00 0.00 2.75
78 79 6.464222 TCCGGAGCGATCAATTTTATTATCT 58.536 36.000 0.00 0.00 0.00 1.98
79 80 6.721571 TCCGGAGCGATCAATTTTATTATC 57.278 37.500 0.00 0.00 0.00 1.75
80 81 6.878923 TCATCCGGAGCGATCAATTTTATTAT 59.121 34.615 11.34 0.00 0.00 1.28
81 82 6.227522 TCATCCGGAGCGATCAATTTTATTA 58.772 36.000 11.34 0.00 0.00 0.98
82 83 5.063204 TCATCCGGAGCGATCAATTTTATT 58.937 37.500 11.34 0.00 0.00 1.40
83 84 4.641396 TCATCCGGAGCGATCAATTTTAT 58.359 39.130 11.34 0.00 0.00 1.40
84 85 4.066646 TCATCCGGAGCGATCAATTTTA 57.933 40.909 11.34 0.00 0.00 1.52
85 86 2.917933 TCATCCGGAGCGATCAATTTT 58.082 42.857 11.34 0.00 0.00 1.82
86 87 2.620251 TCATCCGGAGCGATCAATTT 57.380 45.000 11.34 0.00 0.00 1.82
87 88 2.420642 CATCATCCGGAGCGATCAATT 58.579 47.619 11.34 0.00 0.00 2.32
88 89 1.943046 GCATCATCCGGAGCGATCAAT 60.943 52.381 11.34 0.00 0.00 2.57
89 90 0.601046 GCATCATCCGGAGCGATCAA 60.601 55.000 11.34 0.00 0.00 2.57
90 91 1.005748 GCATCATCCGGAGCGATCA 60.006 57.895 11.34 0.00 0.00 2.92
91 92 0.320247 AAGCATCATCCGGAGCGATC 60.320 55.000 11.34 8.72 0.00 3.69
92 93 0.107456 AAAGCATCATCCGGAGCGAT 59.893 50.000 11.34 11.93 0.00 4.58
93 94 0.811219 CAAAGCATCATCCGGAGCGA 60.811 55.000 11.34 9.81 0.00 4.93
94 95 0.811219 TCAAAGCATCATCCGGAGCG 60.811 55.000 11.34 3.39 0.00 5.03
95 96 1.382522 TTCAAAGCATCATCCGGAGC 58.617 50.000 11.34 7.95 0.00 4.70
96 97 4.142315 ACATTTTCAAAGCATCATCCGGAG 60.142 41.667 11.34 2.05 0.00 4.63
97 98 3.763360 ACATTTTCAAAGCATCATCCGGA 59.237 39.130 6.61 6.61 0.00 5.14
98 99 4.107622 GACATTTTCAAAGCATCATCCGG 58.892 43.478 0.00 0.00 0.00 5.14
99 100 4.735985 TGACATTTTCAAAGCATCATCCG 58.264 39.130 0.00 0.00 0.00 4.18
100 101 5.957798 TCTGACATTTTCAAAGCATCATCC 58.042 37.500 0.00 0.00 32.21 3.51
101 102 6.527023 CACTCTGACATTTTCAAAGCATCATC 59.473 38.462 0.00 0.00 32.21 2.92
102 103 6.208007 TCACTCTGACATTTTCAAAGCATCAT 59.792 34.615 0.00 0.00 32.21 2.45
103 104 5.532032 TCACTCTGACATTTTCAAAGCATCA 59.468 36.000 0.00 0.00 32.21 3.07
104 105 5.855395 GTCACTCTGACATTTTCAAAGCATC 59.145 40.000 0.00 0.00 46.22 3.91
105 106 5.766222 GTCACTCTGACATTTTCAAAGCAT 58.234 37.500 0.00 0.00 46.22 3.79
106 107 5.173774 GTCACTCTGACATTTTCAAAGCA 57.826 39.130 0.00 0.00 46.22 3.91
125 126 7.149307 TCATAGTTACATTCGTGACTTTGTCA 58.851 34.615 7.47 0.00 38.76 3.58
126 127 7.576750 TCATAGTTACATTCGTGACTTTGTC 57.423 36.000 7.47 0.00 38.76 3.18
127 128 6.090898 GCTCATAGTTACATTCGTGACTTTGT 59.909 38.462 7.47 0.00 38.76 2.83
128 129 6.470160 GCTCATAGTTACATTCGTGACTTTG 58.530 40.000 0.00 0.00 38.76 2.77
129 130 5.288712 CGCTCATAGTTACATTCGTGACTTT 59.711 40.000 0.00 0.00 38.76 2.66
130 131 4.798907 CGCTCATAGTTACATTCGTGACTT 59.201 41.667 0.00 0.00 38.76 3.01
131 132 4.095932 TCGCTCATAGTTACATTCGTGACT 59.904 41.667 0.00 0.00 43.76 3.41
132 133 4.204573 GTCGCTCATAGTTACATTCGTGAC 59.795 45.833 0.00 0.00 31.91 3.67
133 134 4.095932 AGTCGCTCATAGTTACATTCGTGA 59.904 41.667 0.00 0.00 0.00 4.35
134 135 4.205181 CAGTCGCTCATAGTTACATTCGTG 59.795 45.833 0.00 0.00 0.00 4.35
135 136 4.352039 CAGTCGCTCATAGTTACATTCGT 58.648 43.478 0.00 0.00 0.00 3.85
136 137 3.731216 CCAGTCGCTCATAGTTACATTCG 59.269 47.826 0.00 0.00 0.00 3.34
137 138 4.740695 GTCCAGTCGCTCATAGTTACATTC 59.259 45.833 0.00 0.00 0.00 2.67
138 139 4.402793 AGTCCAGTCGCTCATAGTTACATT 59.597 41.667 0.00 0.00 0.00 2.71
139 140 3.954904 AGTCCAGTCGCTCATAGTTACAT 59.045 43.478 0.00 0.00 0.00 2.29
140 141 3.353557 AGTCCAGTCGCTCATAGTTACA 58.646 45.455 0.00 0.00 0.00 2.41
141 142 3.377485 TGAGTCCAGTCGCTCATAGTTAC 59.623 47.826 0.00 0.00 36.89 2.50
142 143 3.617284 TGAGTCCAGTCGCTCATAGTTA 58.383 45.455 0.00 0.00 36.89 2.24
143 144 2.447443 TGAGTCCAGTCGCTCATAGTT 58.553 47.619 0.00 0.00 36.89 2.24
144 145 2.130272 TGAGTCCAGTCGCTCATAGT 57.870 50.000 0.00 0.00 36.89 2.12
145 146 3.510388 TTTGAGTCCAGTCGCTCATAG 57.490 47.619 0.00 0.00 40.83 2.23
146 147 3.258372 ACTTTTGAGTCCAGTCGCTCATA 59.742 43.478 0.00 0.00 40.83 2.15
147 148 2.037772 ACTTTTGAGTCCAGTCGCTCAT 59.962 45.455 0.00 0.00 40.83 2.90
148 149 1.412710 ACTTTTGAGTCCAGTCGCTCA 59.587 47.619 0.00 0.00 39.66 4.26
149 150 2.062519 GACTTTTGAGTCCAGTCGCTC 58.937 52.381 0.00 0.00 32.97 5.03
150 151 1.412710 TGACTTTTGAGTCCAGTCGCT 59.587 47.619 4.29 0.00 39.97 4.93
151 152 1.865865 TGACTTTTGAGTCCAGTCGC 58.134 50.000 4.29 0.00 39.97 5.19
152 153 2.996621 GGATGACTTTTGAGTCCAGTCG 59.003 50.000 4.29 0.00 39.97 4.18
153 154 3.999663 CAGGATGACTTTTGAGTCCAGTC 59.000 47.826 4.29 7.11 39.69 3.51
154 155 3.392616 ACAGGATGACTTTTGAGTCCAGT 59.607 43.478 4.29 0.00 39.69 4.00
155 156 4.013267 ACAGGATGACTTTTGAGTCCAG 57.987 45.455 4.29 0.00 39.69 3.86
156 157 4.437682 AACAGGATGACTTTTGAGTCCA 57.562 40.909 4.29 0.00 39.69 4.02
157 158 5.774498 AAAACAGGATGACTTTTGAGTCC 57.226 39.130 4.29 0.00 39.69 3.85
158 159 7.132863 GTGTAAAACAGGATGACTTTTGAGTC 58.867 38.462 0.00 0.00 39.69 3.36
159 160 6.238374 CGTGTAAAACAGGATGACTTTTGAGT 60.238 38.462 0.00 0.00 39.69 3.41
160 161 6.018262 TCGTGTAAAACAGGATGACTTTTGAG 60.018 38.462 0.00 0.00 37.99 3.02
161 162 5.818336 TCGTGTAAAACAGGATGACTTTTGA 59.182 36.000 0.00 0.00 37.99 2.69
162 163 6.055231 TCGTGTAAAACAGGATGACTTTTG 57.945 37.500 0.00 0.00 37.99 2.44
171 172 3.932710 GCATCTCATCGTGTAAAACAGGA 59.067 43.478 5.06 5.06 45.47 3.86
172 173 3.684305 TGCATCTCATCGTGTAAAACAGG 59.316 43.478 0.00 0.00 35.48 4.00
173 174 4.926860 TGCATCTCATCGTGTAAAACAG 57.073 40.909 0.00 0.00 0.00 3.16
174 175 5.872070 TGTATGCATCTCATCGTGTAAAACA 59.128 36.000 0.19 0.00 36.63 2.83
175 176 6.344572 TGTATGCATCTCATCGTGTAAAAC 57.655 37.500 0.19 0.00 36.63 2.43
176 177 6.976636 TTGTATGCATCTCATCGTGTAAAA 57.023 33.333 0.19 0.00 36.63 1.52
177 178 6.976636 TTTGTATGCATCTCATCGTGTAAA 57.023 33.333 0.19 0.00 36.63 2.01
178 179 8.655651 TTATTTGTATGCATCTCATCGTGTAA 57.344 30.769 0.19 0.00 36.63 2.41
179 180 8.831715 ATTATTTGTATGCATCTCATCGTGTA 57.168 30.769 0.19 0.00 36.63 2.90
180 181 7.734924 ATTATTTGTATGCATCTCATCGTGT 57.265 32.000 0.19 0.00 36.63 4.49
191 192 9.337396 ACGAGGAAGAATAATTATTTGTATGCA 57.663 29.630 11.92 0.00 0.00 3.96
204 205 9.419297 GTGCAACATATATACGAGGAAGAATAA 57.581 33.333 0.00 0.00 36.32 1.40
205 206 8.581578 TGTGCAACATATATACGAGGAAGAATA 58.418 33.333 0.00 0.00 45.67 1.75
206 207 7.441836 TGTGCAACATATATACGAGGAAGAAT 58.558 34.615 0.00 0.00 45.67 2.40
207 208 6.811954 TGTGCAACATATATACGAGGAAGAA 58.188 36.000 0.00 0.00 45.67 2.52
208 209 6.399639 TGTGCAACATATATACGAGGAAGA 57.600 37.500 0.00 0.00 45.67 2.87
244 245 3.973206 TCTCTCTCATACCCGCAAAAA 57.027 42.857 0.00 0.00 0.00 1.94
245 246 3.432186 CCATCTCTCTCATACCCGCAAAA 60.432 47.826 0.00 0.00 0.00 2.44
246 247 2.103094 CCATCTCTCTCATACCCGCAAA 59.897 50.000 0.00 0.00 0.00 3.68
247 248 1.688735 CCATCTCTCTCATACCCGCAA 59.311 52.381 0.00 0.00 0.00 4.85
248 249 1.133482 TCCATCTCTCTCATACCCGCA 60.133 52.381 0.00 0.00 0.00 5.69
249 250 1.621992 TCCATCTCTCTCATACCCGC 58.378 55.000 0.00 0.00 0.00 6.13
250 251 6.596621 TCTATATCCATCTCTCTCATACCCG 58.403 44.000 0.00 0.00 0.00 5.28
295 296 1.615919 CCCGGCCCTTGTTGAAGTATT 60.616 52.381 0.00 0.00 0.00 1.89
296 297 0.034477 CCCGGCCCTTGTTGAAGTAT 60.034 55.000 0.00 0.00 0.00 2.12
297 298 1.377229 CCCGGCCCTTGTTGAAGTA 59.623 57.895 0.00 0.00 0.00 2.24
298 299 2.115266 CCCGGCCCTTGTTGAAGT 59.885 61.111 0.00 0.00 0.00 3.01
299 300 1.971695 GACCCGGCCCTTGTTGAAG 60.972 63.158 0.00 0.00 0.00 3.02
300 301 2.114411 GACCCGGCCCTTGTTGAA 59.886 61.111 0.00 0.00 0.00 2.69
301 302 2.075355 ATTGACCCGGCCCTTGTTGA 62.075 55.000 0.00 0.00 0.00 3.18
302 303 1.184970 AATTGACCCGGCCCTTGTTG 61.185 55.000 0.00 0.00 0.00 3.33
303 304 0.471022 AAATTGACCCGGCCCTTGTT 60.471 50.000 0.00 0.00 0.00 2.83
304 305 0.898326 GAAATTGACCCGGCCCTTGT 60.898 55.000 0.00 0.00 0.00 3.16
305 306 1.890174 GAAATTGACCCGGCCCTTG 59.110 57.895 0.00 0.00 0.00 3.61
306 307 1.677633 CGAAATTGACCCGGCCCTT 60.678 57.895 0.00 0.00 0.00 3.95
307 308 2.045340 CGAAATTGACCCGGCCCT 60.045 61.111 0.00 0.00 0.00 5.19
308 309 1.974875 AACGAAATTGACCCGGCCC 60.975 57.895 0.00 0.00 0.00 5.80
309 310 1.211709 CAACGAAATTGACCCGGCC 59.788 57.895 0.00 0.00 41.23 6.13
310 311 1.211709 CCAACGAAATTGACCCGGC 59.788 57.895 0.00 0.00 41.23 6.13
311 312 1.199097 CTTCCAACGAAATTGACCCGG 59.801 52.381 0.00 0.00 41.23 5.73
312 313 1.199097 CCTTCCAACGAAATTGACCCG 59.801 52.381 0.00 0.00 41.23 5.28
313 314 2.510613 TCCTTCCAACGAAATTGACCC 58.489 47.619 0.00 0.00 41.23 4.46
314 315 3.305131 GGTTCCTTCCAACGAAATTGACC 60.305 47.826 0.00 0.00 41.23 4.02
315 316 3.316868 TGGTTCCTTCCAACGAAATTGAC 59.683 43.478 0.00 0.00 41.23 3.18
316 317 3.556999 TGGTTCCTTCCAACGAAATTGA 58.443 40.909 0.00 0.00 41.23 2.57
317 318 4.314740 TTGGTTCCTTCCAACGAAATTG 57.685 40.909 0.00 0.00 41.79 2.32
333 334 7.879160 TGTATAAAACTCGGTGAACTATTGGTT 59.121 33.333 0.00 0.00 41.40 3.67
334 335 7.332678 GTGTATAAAACTCGGTGAACTATTGGT 59.667 37.037 0.00 0.00 0.00 3.67
335 336 7.201582 GGTGTATAAAACTCGGTGAACTATTGG 60.202 40.741 0.00 0.00 0.00 3.16
336 337 7.332430 TGGTGTATAAAACTCGGTGAACTATTG 59.668 37.037 0.00 0.00 0.00 1.90
337 338 7.388437 TGGTGTATAAAACTCGGTGAACTATT 58.612 34.615 0.00 0.00 0.00 1.73
338 339 6.938507 TGGTGTATAAAACTCGGTGAACTAT 58.061 36.000 0.00 0.00 0.00 2.12
339 340 6.343716 TGGTGTATAAAACTCGGTGAACTA 57.656 37.500 0.00 0.00 0.00 2.24
340 341 5.217978 TGGTGTATAAAACTCGGTGAACT 57.782 39.130 0.00 0.00 0.00 3.01
341 342 5.927954 TTGGTGTATAAAACTCGGTGAAC 57.072 39.130 0.00 0.00 0.00 3.18
342 343 5.998981 ACATTGGTGTATAAAACTCGGTGAA 59.001 36.000 0.00 0.00 36.63 3.18
343 344 5.553123 ACATTGGTGTATAAAACTCGGTGA 58.447 37.500 0.00 0.00 36.63 4.02
344 345 5.873179 ACATTGGTGTATAAAACTCGGTG 57.127 39.130 0.00 0.00 36.63 4.94
345 346 7.388437 TCTTACATTGGTGTATAAAACTCGGT 58.612 34.615 0.00 0.00 40.35 4.69
346 347 7.837202 TCTTACATTGGTGTATAAAACTCGG 57.163 36.000 0.00 0.00 40.35 4.63
355 356 9.730705 CAATGGAGATATCTTACATTGGTGTAT 57.269 33.333 31.77 14.47 41.98 2.29
356 357 7.661437 GCAATGGAGATATCTTACATTGGTGTA 59.339 37.037 35.15 11.59 43.68 2.90
357 358 6.488006 GCAATGGAGATATCTTACATTGGTGT 59.512 38.462 35.15 17.97 43.68 4.16
358 359 6.906659 GCAATGGAGATATCTTACATTGGTG 58.093 40.000 35.15 24.77 43.68 4.17
359 360 6.845908 AGCAATGGAGATATCTTACATTGGT 58.154 36.000 34.28 34.28 45.80 3.67
360 361 8.853077 TTAGCAATGGAGATATCTTACATTGG 57.147 34.615 35.15 26.21 43.68 3.16
385 386 4.959723 TGCCATGAGCTTTTTAGCTTTTT 58.040 34.783 0.00 0.00 46.36 1.94
386 387 4.605640 TGCCATGAGCTTTTTAGCTTTT 57.394 36.364 0.00 0.00 46.36 2.27
387 388 4.309933 GTTGCCATGAGCTTTTTAGCTTT 58.690 39.130 0.00 0.00 46.36 3.51
388 389 3.612479 CGTTGCCATGAGCTTTTTAGCTT 60.612 43.478 0.00 0.00 46.36 3.74
390 391 2.253603 CGTTGCCATGAGCTTTTTAGC 58.746 47.619 0.00 0.00 44.23 3.09
391 392 2.253603 GCGTTGCCATGAGCTTTTTAG 58.746 47.619 0.00 0.00 44.23 1.85
392 393 1.611006 TGCGTTGCCATGAGCTTTTTA 59.389 42.857 0.00 0.00 44.23 1.52
393 394 0.388659 TGCGTTGCCATGAGCTTTTT 59.611 45.000 0.00 0.00 44.23 1.94
394 395 0.318955 GTGCGTTGCCATGAGCTTTT 60.319 50.000 0.00 0.00 44.23 2.27
395 396 1.286880 GTGCGTTGCCATGAGCTTT 59.713 52.632 0.00 0.00 44.23 3.51
396 397 2.956987 GTGCGTTGCCATGAGCTT 59.043 55.556 0.00 0.00 44.23 3.74
397 398 3.425713 CGTGCGTTGCCATGAGCT 61.426 61.111 0.00 0.00 44.23 4.09
398 399 3.372676 CTCGTGCGTTGCCATGAGC 62.373 63.158 0.00 0.00 40.71 4.26
399 400 2.780643 CTCGTGCGTTGCCATGAG 59.219 61.111 0.00 0.00 41.07 2.90
400 401 3.422303 GCTCGTGCGTTGCCATGA 61.422 61.111 0.00 0.00 0.00 3.07
401 402 2.531927 AATGCTCGTGCGTTGCCATG 62.532 55.000 15.59 0.00 45.65 3.66
402 403 2.334946 AATGCTCGTGCGTTGCCAT 61.335 52.632 15.59 0.00 45.65 4.40
403 404 2.977456 AATGCTCGTGCGTTGCCA 60.977 55.556 15.59 0.00 45.65 4.92
408 409 1.743958 ACTAGTAGAATGCTCGTGCGT 59.256 47.619 3.59 0.99 43.34 5.24
409 410 2.476873 ACTAGTAGAATGCTCGTGCG 57.523 50.000 3.59 0.00 43.34 5.34
410 411 3.243101 TGCTACTAGTAGAATGCTCGTGC 60.243 47.826 30.09 13.85 35.21 5.34
411 412 4.553756 TGCTACTAGTAGAATGCTCGTG 57.446 45.455 30.09 4.31 35.21 4.35
412 413 5.776173 ATTGCTACTAGTAGAATGCTCGT 57.224 39.130 30.09 6.62 35.21 4.18
413 414 8.749841 ATTTATTGCTACTAGTAGAATGCTCG 57.250 34.615 30.09 5.70 35.21 5.03
463 464 1.480954 GAGGTCTAACCGGCATCTGAA 59.519 52.381 0.00 0.00 44.90 3.02
465 466 1.115467 AGAGGTCTAACCGGCATCTG 58.885 55.000 0.00 0.00 44.90 2.90
467 468 2.093658 TGAAAGAGGTCTAACCGGCATC 60.094 50.000 0.00 0.00 44.90 3.91
468 469 1.906574 TGAAAGAGGTCTAACCGGCAT 59.093 47.619 0.00 0.00 44.90 4.40
469 470 1.344065 TGAAAGAGGTCTAACCGGCA 58.656 50.000 0.00 0.00 44.90 5.69
470 471 2.693267 ATGAAAGAGGTCTAACCGGC 57.307 50.000 0.00 0.00 44.90 6.13
471 472 5.340439 AGTTATGAAAGAGGTCTAACCGG 57.660 43.478 0.00 0.00 44.90 5.28
697 699 4.857588 CACGCGTACAGAGAGAACTTAATT 59.142 41.667 13.44 0.00 0.00 1.40
701 703 1.666311 GCACGCGTACAGAGAGAACTT 60.666 52.381 13.44 0.00 0.00 2.66
702 704 0.109689 GCACGCGTACAGAGAGAACT 60.110 55.000 13.44 0.00 0.00 3.01
753 755 0.788645 GGAAACGAGACGAGACGACG 60.789 60.000 0.00 0.00 39.31 5.12
777 779 0.733729 CGGTGGAGAAGACTAGACGG 59.266 60.000 0.00 0.00 0.00 4.79
781 783 0.173708 GTGCCGGTGGAGAAGACTAG 59.826 60.000 1.90 0.00 0.00 2.57
782 784 0.251653 AGTGCCGGTGGAGAAGACTA 60.252 55.000 1.90 0.00 0.00 2.59
789 791 1.320344 TGCTAGTAGTGCCGGTGGAG 61.320 60.000 1.90 0.00 0.00 3.86
796 798 1.000145 GAAAGCGTGCTAGTAGTGCC 59.000 55.000 0.00 0.00 0.00 5.01
804 806 1.623811 AGAGGAAAGGAAAGCGTGCTA 59.376 47.619 0.00 0.00 0.00 3.49
805 807 0.398318 AGAGGAAAGGAAAGCGTGCT 59.602 50.000 0.00 0.00 0.00 4.40
842 844 1.593196 TTGGTGCTTTTGGAGTCTCG 58.407 50.000 0.00 0.00 0.00 4.04
909 916 0.479815 GGGATGGAGATGGCAATGGA 59.520 55.000 0.00 0.00 0.00 3.41
1003 1010 2.015587 CTTGAGCAAAGATCTGGAGCC 58.984 52.381 0.00 0.00 38.24 4.70
1068 1075 0.249955 AAAATGGCGCATGGAAAGGG 59.750 50.000 10.83 0.00 0.00 3.95
1114 1121 3.636764 TCAGGAACAAAGAAAAGAAGGGC 59.363 43.478 0.00 0.00 0.00 5.19
1165 1172 4.748892 AGACATCTCACGATTACCAAGTG 58.251 43.478 0.00 0.00 37.24 3.16
1218 1225 3.952967 GAGTAACACCCTCGAGTCCTAAT 59.047 47.826 12.31 0.00 0.00 1.73
1244 1251 3.517500 ACTTCAGCCCCAAAAGTGAAAAA 59.482 39.130 0.00 0.00 32.22 1.94
1269 1276 4.866921 TCTTACACGAATGATACCGGATG 58.133 43.478 9.46 0.00 0.00 3.51
1271 1278 3.317149 CCTCTTACACGAATGATACCGGA 59.683 47.826 9.46 0.00 0.00 5.14
1275 1282 6.421202 GGATGTTCCTCTTACACGAATGATAC 59.579 42.308 0.00 0.00 32.53 2.24
1282 1289 2.496070 CAGGGATGTTCCTCTTACACGA 59.504 50.000 0.00 0.00 36.57 4.35
1284 1291 4.162320 TCATCAGGGATGTTCCTCTTACAC 59.838 45.833 6.15 0.00 40.55 2.90
1300 1307 9.224267 AGAAAATGTTCGGATTATATCATCAGG 57.776 33.333 0.00 0.00 38.90 3.86
1325 1332 1.679680 CTGGCAGGCATTAACATCCAG 59.320 52.381 6.61 0.00 34.44 3.86
1394 1402 4.889832 AAAGGCTTAGCGATCTGAATTG 57.110 40.909 0.00 0.00 0.00 2.32
1476 1484 5.048013 AGCAAAACCTTATGTAAAGGACTGC 60.048 40.000 10.67 13.57 39.81 4.40
1510 1518 3.186409 CACGCACTAGCAAAACTACACAT 59.814 43.478 0.00 0.00 42.27 3.21
1546 1554 3.251479 TCACAATGAGAATGGACCGAG 57.749 47.619 0.00 0.00 0.00 4.63
1578 1586 1.116308 TGGACAAGACCAGACAACGA 58.884 50.000 0.00 0.00 34.77 3.85
1579 1587 2.069273 GATGGACAAGACCAGACAACG 58.931 52.381 0.00 0.00 43.49 4.10
1625 1633 5.415961 ACCTAGCCACATATAAAGGGATCT 58.584 41.667 0.00 0.00 0.00 2.75
1696 1704 2.108168 CAACTAATCCGGGACAGAGGA 58.892 52.381 13.05 0.00 41.30 3.71
1708 1716 6.876257 ACCTCACAAATCTGAGTCAACTAATC 59.124 38.462 0.00 0.00 36.66 1.75
1849 1857 2.614259 CCCAGTAGAGCACTCCCATAT 58.386 52.381 0.00 0.00 34.26 1.78
2007 2015 5.884792 AGGATGATTCAAGTTGGATGAACTC 59.115 40.000 0.00 0.00 44.68 3.01
2114 2122 1.269723 GGCCTGCAAGACAAAGGTAAC 59.730 52.381 0.00 0.00 34.07 2.50
2418 2426 4.576330 AAGAGCCCTAACATTTACTGCT 57.424 40.909 0.00 0.00 0.00 4.24
2566 2575 1.024271 CCTGATTTATGGTGGGCACG 58.976 55.000 0.00 0.00 0.00 5.34
2587 2596 8.070034 AGCCAATTAATCATCAAGATGTGAAA 57.930 30.769 9.66 3.82 40.50 2.69
2817 2826 3.270877 GGAGAACCACTATGTCGCAAAT 58.729 45.455 0.00 0.00 35.97 2.32
2818 2827 2.037902 TGGAGAACCACTATGTCGCAAA 59.962 45.455 0.00 0.00 41.77 3.68
2964 2973 1.203288 TGGCAAGACCATGGGGATTTT 60.203 47.619 18.09 0.00 46.36 1.82
2977 2986 5.465532 TGCAAAACTCAAATATGGCAAGA 57.534 34.783 0.00 0.00 0.00 3.02
3126 3135 4.927267 TTCTGAGGGACATACCAAATGT 57.073 40.909 0.00 0.00 41.20 2.71
3179 3188 7.105588 TCAATGTACTTATCAAGTGCTGTGAT 58.894 34.615 8.30 3.43 43.47 3.06
3338 3347 5.786311 ACTGGAAACCAATGACATGAATTG 58.214 37.500 14.90 14.90 35.26 2.32
3379 3388 3.200165 GGAGTCTGTAATTGGCCTTACCT 59.800 47.826 3.32 0.00 40.22 3.08
3447 3457 5.602561 ACCAGGCAGTACATTAGATATCACA 59.397 40.000 5.32 0.00 0.00 3.58
3525 3535 7.328493 GGTTTAGCCTTAAAACAAAGCATACTG 59.672 37.037 0.00 0.00 38.34 2.74
3618 3628 3.521126 ACCAGACATCAGAACAATAGCCT 59.479 43.478 0.00 0.00 0.00 4.58
3638 3648 3.736126 GCCAACCTACAGTACACGATACC 60.736 52.174 0.00 0.00 0.00 2.73
3656 3666 3.324846 AGACTGTGTAGATGACTTGCCAA 59.675 43.478 0.00 0.00 0.00 4.52
3671 3681 3.254166 CCTTTCCACAATTCCAGACTGTG 59.746 47.826 0.93 0.00 40.13 3.66
3741 3753 5.393962 CCTTCGAGGCTTTTGTATCTTTTG 58.606 41.667 0.00 0.00 0.00 2.44
3768 3780 5.624159 TCTTCTGCTCTTTTGAATCCTTCA 58.376 37.500 0.00 0.00 38.04 3.02
3769 3781 6.349197 CCTTCTTCTGCTCTTTTGAATCCTTC 60.349 42.308 0.00 0.00 0.00 3.46
3796 3808 1.270625 TGTTCTTCGGAGCATTTCGGT 60.271 47.619 0.00 0.00 30.38 4.69
3816 3828 6.469782 TTGAATCTTTCAGTGCCTTTTTCT 57.530 33.333 0.00 0.00 41.38 2.52
3817 3829 7.492344 TCTTTTGAATCTTTCAGTGCCTTTTTC 59.508 33.333 0.00 0.00 41.38 2.29
3852 3864 4.805609 GCTCTTTCCAGTCTTCCAATGACT 60.806 45.833 0.00 0.00 44.62 3.41
3906 3918 4.953781 TCATTTGAATCTTTCCCCTCCT 57.046 40.909 0.00 0.00 0.00 3.69
3912 3924 5.629435 GGTTGACGTTCATTTGAATCTTTCC 59.371 40.000 0.00 0.00 36.33 3.13
3946 3958 0.306228 CGAATGTCACACGTTTGCCA 59.694 50.000 0.00 0.00 0.00 4.92
3948 3960 1.320382 CGCGAATGTCACACGTTTGC 61.320 55.000 0.00 9.85 46.20 3.68
4052 4064 0.250901 AAGCTGCGGTTCCATGAGTT 60.251 50.000 0.00 0.00 0.00 3.01
4087 4099 5.841957 TCTAGTTCCGGTAACTATGTTCC 57.158 43.478 19.94 0.00 46.85 3.62
4227 4239 0.964860 CATTCCCGTGGTTGATGCCA 60.965 55.000 0.00 0.00 35.93 4.92
4343 4355 5.163237 ACCAACATCTACACACCTACAGTTT 60.163 40.000 0.00 0.00 0.00 2.66
4383 4395 8.207545 ACTCTTCCAGCTAATAATAAGGTTCTG 58.792 37.037 0.00 0.00 0.00 3.02
4385 4397 7.382759 CGACTCTTCCAGCTAATAATAAGGTTC 59.617 40.741 0.00 0.00 0.00 3.62
4413 4428 6.537301 GTCCTGACAACGGATTTAATATCACA 59.463 38.462 0.00 0.00 32.25 3.58
4493 4508 1.528129 CTCTCACCAACTGGCTTTCC 58.472 55.000 0.00 0.00 39.32 3.13
4494 4509 0.877743 GCTCTCACCAACTGGCTTTC 59.122 55.000 0.00 0.00 39.32 2.62
4495 4510 0.183492 TGCTCTCACCAACTGGCTTT 59.817 50.000 0.00 0.00 39.32 3.51
4496 4511 0.183492 TTGCTCTCACCAACTGGCTT 59.817 50.000 0.00 0.00 39.32 4.35
4497 4512 0.536006 GTTGCTCTCACCAACTGGCT 60.536 55.000 0.00 0.00 39.47 4.75
4498 4513 1.952263 GTTGCTCTCACCAACTGGC 59.048 57.895 0.00 0.00 39.47 4.85
4502 4517 6.204882 ACAGTTAAATAGTTGCTCTCACCAAC 59.795 38.462 0.00 0.00 42.11 3.77
4503 4518 6.296026 ACAGTTAAATAGTTGCTCTCACCAA 58.704 36.000 0.00 0.00 0.00 3.67
4504 4519 5.865085 ACAGTTAAATAGTTGCTCTCACCA 58.135 37.500 0.00 0.00 0.00 4.17
4505 4520 6.803154 AACAGTTAAATAGTTGCTCTCACC 57.197 37.500 0.00 0.00 0.00 4.02
4506 4521 7.603024 AGGTAACAGTTAAATAGTTGCTCTCAC 59.397 37.037 0.00 0.00 41.41 3.51
4507 4522 7.676947 AGGTAACAGTTAAATAGTTGCTCTCA 58.323 34.615 0.00 0.00 41.41 3.27
4508 4523 8.549338 AAGGTAACAGTTAAATAGTTGCTCTC 57.451 34.615 0.00 0.00 41.41 3.20
4509 4524 8.376270 AGAAGGTAACAGTTAAATAGTTGCTCT 58.624 33.333 0.00 0.00 41.41 4.09
4510 4525 8.549338 AGAAGGTAACAGTTAAATAGTTGCTC 57.451 34.615 0.00 0.00 41.41 4.26
4511 4526 9.433153 GTAGAAGGTAACAGTTAAATAGTTGCT 57.567 33.333 0.00 0.00 41.41 3.91
4512 4527 9.211485 TGTAGAAGGTAACAGTTAAATAGTTGC 57.789 33.333 0.00 0.00 41.41 4.17
4514 4529 9.433153 GCTGTAGAAGGTAACAGTTAAATAGTT 57.567 33.333 0.00 0.00 44.03 2.24
4515 4530 7.758528 CGCTGTAGAAGGTAACAGTTAAATAGT 59.241 37.037 0.00 0.00 44.03 2.12
4516 4531 7.222224 CCGCTGTAGAAGGTAACAGTTAAATAG 59.778 40.741 0.00 0.00 44.03 1.73
4517 4532 7.037438 CCGCTGTAGAAGGTAACAGTTAAATA 58.963 38.462 0.00 0.00 44.03 1.40
4518 4533 5.873164 CCGCTGTAGAAGGTAACAGTTAAAT 59.127 40.000 0.00 0.00 44.03 1.40
4519 4534 5.221501 ACCGCTGTAGAAGGTAACAGTTAAA 60.222 40.000 0.00 0.00 44.03 1.52
4520 4535 4.281688 ACCGCTGTAGAAGGTAACAGTTAA 59.718 41.667 0.00 0.00 44.03 2.01
4521 4536 3.828451 ACCGCTGTAGAAGGTAACAGTTA 59.172 43.478 4.57 0.00 44.03 2.24
4522 4537 2.631545 ACCGCTGTAGAAGGTAACAGTT 59.368 45.455 4.57 0.00 44.03 3.16
4523 4538 2.230750 GACCGCTGTAGAAGGTAACAGT 59.769 50.000 4.57 0.00 44.03 3.55
4524 4539 2.230508 TGACCGCTGTAGAAGGTAACAG 59.769 50.000 0.00 0.00 44.79 3.16
4525 4540 2.029649 GTGACCGCTGTAGAAGGTAACA 60.030 50.000 8.64 0.00 38.87 2.41
4526 4541 2.230750 AGTGACCGCTGTAGAAGGTAAC 59.769 50.000 6.43 6.43 39.23 2.50
4527 4542 2.522185 AGTGACCGCTGTAGAAGGTAA 58.478 47.619 0.55 0.00 38.57 2.85
4528 4543 2.211250 AGTGACCGCTGTAGAAGGTA 57.789 50.000 0.55 0.00 38.57 3.08
4529 4544 1.272769 GAAGTGACCGCTGTAGAAGGT 59.727 52.381 0.17 0.17 41.63 3.50
4530 4545 1.404315 GGAAGTGACCGCTGTAGAAGG 60.404 57.143 0.00 0.00 0.00 3.46
4531 4546 1.404315 GGGAAGTGACCGCTGTAGAAG 60.404 57.143 0.00 0.00 0.00 2.85
4532 4547 0.606604 GGGAAGTGACCGCTGTAGAA 59.393 55.000 0.00 0.00 0.00 2.10
4533 4548 0.251653 AGGGAAGTGACCGCTGTAGA 60.252 55.000 0.00 0.00 0.00 2.59
4534 4549 0.108615 CAGGGAAGTGACCGCTGTAG 60.109 60.000 0.00 0.00 0.00 2.74
4535 4550 1.541310 CCAGGGAAGTGACCGCTGTA 61.541 60.000 0.00 0.00 31.26 2.74
4536 4551 2.743718 CAGGGAAGTGACCGCTGT 59.256 61.111 0.00 0.00 0.00 4.40
4537 4552 2.046892 CCAGGGAAGTGACCGCTG 60.047 66.667 0.00 0.00 0.00 5.18
4538 4553 4.021925 GCCAGGGAAGTGACCGCT 62.022 66.667 0.00 0.00 0.00 5.52
4557 4572 3.767230 CACACGAGAGTTGCGGCG 61.767 66.667 0.51 0.51 46.40 6.46
4558 4573 4.077188 GCACACGAGAGTTGCGGC 62.077 66.667 0.00 0.00 46.40 6.53
4561 4576 3.414700 CCCGCACACGAGAGTTGC 61.415 66.667 0.00 0.00 46.40 4.17
4562 4577 1.079819 ATCCCGCACACGAGAGTTG 60.080 57.895 0.00 0.00 46.40 3.16
4563 4578 1.079819 CATCCCGCACACGAGAGTT 60.080 57.895 0.00 0.00 46.40 3.01
4564 4579 3.649277 GCATCCCGCACACGAGAGT 62.649 63.158 0.00 0.00 43.98 3.24
4565 4580 2.887568 GCATCCCGCACACGAGAG 60.888 66.667 0.00 0.00 43.93 3.20
4574 4589 2.562912 CAGTTGTGTGCATCCCGC 59.437 61.111 0.00 0.00 42.89 6.13
4575 4590 1.300971 CTCCAGTTGTGTGCATCCCG 61.301 60.000 0.00 0.00 0.00 5.14
4576 4591 1.589716 GCTCCAGTTGTGTGCATCCC 61.590 60.000 0.00 0.00 0.00 3.85
4577 4592 0.890542 TGCTCCAGTTGTGTGCATCC 60.891 55.000 0.00 0.00 0.00 3.51
4578 4593 1.135489 CATGCTCCAGTTGTGTGCATC 60.135 52.381 0.00 0.00 38.87 3.91
4579 4594 0.885879 CATGCTCCAGTTGTGTGCAT 59.114 50.000 0.00 0.00 40.44 3.96
4580 4595 0.179023 TCATGCTCCAGTTGTGTGCA 60.179 50.000 0.00 0.00 36.24 4.57
4581 4596 0.953727 TTCATGCTCCAGTTGTGTGC 59.046 50.000 0.00 0.00 0.00 4.57
4582 4597 3.928727 AATTCATGCTCCAGTTGTGTG 57.071 42.857 0.00 0.00 0.00 3.82
4583 4598 4.942761 AAAATTCATGCTCCAGTTGTGT 57.057 36.364 0.00 0.00 0.00 3.72
4584 4599 4.687483 GGAAAAATTCATGCTCCAGTTGTG 59.313 41.667 0.00 0.00 0.00 3.33
4585 4600 4.590222 AGGAAAAATTCATGCTCCAGTTGT 59.410 37.500 0.00 0.00 0.00 3.32
4586 4601 4.927425 CAGGAAAAATTCATGCTCCAGTTG 59.073 41.667 0.00 0.00 34.49 3.16
4587 4602 4.590222 ACAGGAAAAATTCATGCTCCAGTT 59.410 37.500 4.81 0.00 44.72 3.16
4588 4603 4.154942 ACAGGAAAAATTCATGCTCCAGT 58.845 39.130 4.81 0.00 44.72 4.00
4589 4604 4.796038 ACAGGAAAAATTCATGCTCCAG 57.204 40.909 4.81 0.00 44.72 3.86
4590 4605 5.305128 AGAAACAGGAAAAATTCATGCTCCA 59.695 36.000 4.81 0.00 44.72 3.86
4591 4606 5.636543 CAGAAACAGGAAAAATTCATGCTCC 59.363 40.000 4.81 0.00 44.72 4.70
4592 4607 5.119743 GCAGAAACAGGAAAAATTCATGCTC 59.880 40.000 4.81 2.91 44.72 4.26
4593 4608 4.992951 GCAGAAACAGGAAAAATTCATGCT 59.007 37.500 4.81 0.00 44.72 3.79
4594 4609 4.751098 TGCAGAAACAGGAAAAATTCATGC 59.249 37.500 4.81 0.00 44.72 4.06
4595 4610 5.107760 CGTGCAGAAACAGGAAAAATTCATG 60.108 40.000 3.46 3.46 46.17 3.07
4596 4611 4.984161 CGTGCAGAAACAGGAAAAATTCAT 59.016 37.500 0.00 0.00 0.00 2.57
4597 4612 4.358851 CGTGCAGAAACAGGAAAAATTCA 58.641 39.130 0.00 0.00 0.00 2.57
4598 4613 3.182372 GCGTGCAGAAACAGGAAAAATTC 59.818 43.478 0.00 0.00 0.00 2.17
4599 4614 3.123050 GCGTGCAGAAACAGGAAAAATT 58.877 40.909 0.00 0.00 0.00 1.82
4600 4615 2.742774 GCGTGCAGAAACAGGAAAAAT 58.257 42.857 0.00 0.00 0.00 1.82
4601 4616 1.532921 CGCGTGCAGAAACAGGAAAAA 60.533 47.619 0.00 0.00 0.00 1.94
4602 4617 0.028770 CGCGTGCAGAAACAGGAAAA 59.971 50.000 0.00 0.00 0.00 2.29
4603 4618 1.092921 ACGCGTGCAGAAACAGGAAA 61.093 50.000 12.93 0.00 0.00 3.13
4604 4619 1.092921 AACGCGTGCAGAAACAGGAA 61.093 50.000 14.98 0.00 0.00 3.36
4605 4620 1.092921 AAACGCGTGCAGAAACAGGA 61.093 50.000 14.98 0.00 0.00 3.86
4606 4621 0.248458 AAAACGCGTGCAGAAACAGG 60.248 50.000 14.98 0.00 0.00 4.00
4607 4622 1.252524 CAAAAACGCGTGCAGAAACAG 59.747 47.619 14.98 0.00 0.00 3.16
4608 4623 1.263776 CAAAAACGCGTGCAGAAACA 58.736 45.000 14.98 0.00 0.00 2.83
4609 4624 0.570272 CCAAAAACGCGTGCAGAAAC 59.430 50.000 14.98 0.00 0.00 2.78
4610 4625 0.526524 CCCAAAAACGCGTGCAGAAA 60.527 50.000 14.98 0.00 0.00 2.52
4611 4626 1.064946 CCCAAAAACGCGTGCAGAA 59.935 52.632 14.98 0.00 0.00 3.02
4612 4627 1.658686 AACCCAAAAACGCGTGCAGA 61.659 50.000 14.98 0.00 0.00 4.26
4613 4628 0.804156 AAACCCAAAAACGCGTGCAG 60.804 50.000 14.98 3.05 0.00 4.41
4614 4629 0.389948 AAAACCCAAAAACGCGTGCA 60.390 45.000 14.98 0.00 0.00 4.57
4615 4630 1.557651 TAAAACCCAAAAACGCGTGC 58.442 45.000 14.98 0.00 0.00 5.34
4616 4631 4.267928 TCAAATAAAACCCAAAAACGCGTG 59.732 37.500 14.98 0.24 0.00 5.34
4617 4632 4.430908 TCAAATAAAACCCAAAAACGCGT 58.569 34.783 5.58 5.58 0.00 6.01
4618 4633 5.583969 ATCAAATAAAACCCAAAAACGCG 57.416 34.783 3.53 3.53 0.00 6.01
4619 4634 8.621921 AAAAATCAAATAAAACCCAAAAACGC 57.378 26.923 0.00 0.00 0.00 4.84
4645 4660 8.800370 AAAACCAAAGAGCCTAAATTCAAAAA 57.200 26.923 0.00 0.00 0.00 1.94
4646 4661 8.672815 CAAAAACCAAAGAGCCTAAATTCAAAA 58.327 29.630 0.00 0.00 0.00 2.44
4647 4662 7.826744 ACAAAAACCAAAGAGCCTAAATTCAAA 59.173 29.630 0.00 0.00 0.00 2.69
4648 4663 7.334858 ACAAAAACCAAAGAGCCTAAATTCAA 58.665 30.769 0.00 0.00 0.00 2.69
4649 4664 6.883744 ACAAAAACCAAAGAGCCTAAATTCA 58.116 32.000 0.00 0.00 0.00 2.57
4650 4665 7.786178 AACAAAAACCAAAGAGCCTAAATTC 57.214 32.000 0.00 0.00 0.00 2.17
4651 4666 7.066887 CCAAACAAAAACCAAAGAGCCTAAATT 59.933 33.333 0.00 0.00 0.00 1.82
4652 4667 6.542005 CCAAACAAAAACCAAAGAGCCTAAAT 59.458 34.615 0.00 0.00 0.00 1.40
4653 4668 5.877564 CCAAACAAAAACCAAAGAGCCTAAA 59.122 36.000 0.00 0.00 0.00 1.85
4654 4669 5.046231 ACCAAACAAAAACCAAAGAGCCTAA 60.046 36.000 0.00 0.00 0.00 2.69
4655 4670 4.468153 ACCAAACAAAAACCAAAGAGCCTA 59.532 37.500 0.00 0.00 0.00 3.93
4656 4671 3.263170 ACCAAACAAAAACCAAAGAGCCT 59.737 39.130 0.00 0.00 0.00 4.58
4657 4672 3.605634 ACCAAACAAAAACCAAAGAGCC 58.394 40.909 0.00 0.00 0.00 4.70
4658 4673 4.329801 CAGACCAAACAAAAACCAAAGAGC 59.670 41.667 0.00 0.00 0.00 4.09
4659 4674 4.329801 GCAGACCAAACAAAAACCAAAGAG 59.670 41.667 0.00 0.00 0.00 2.85
4660 4675 4.249661 GCAGACCAAACAAAAACCAAAGA 58.750 39.130 0.00 0.00 0.00 2.52
4661 4676 3.999663 TGCAGACCAAACAAAAACCAAAG 59.000 39.130 0.00 0.00 0.00 2.77
4662 4677 3.748568 GTGCAGACCAAACAAAAACCAAA 59.251 39.130 0.00 0.00 0.00 3.28
4663 4678 3.244215 TGTGCAGACCAAACAAAAACCAA 60.244 39.130 0.00 0.00 0.00 3.67
4664 4679 2.300152 TGTGCAGACCAAACAAAAACCA 59.700 40.909 0.00 0.00 0.00 3.67
4665 4680 2.929398 CTGTGCAGACCAAACAAAAACC 59.071 45.455 0.00 0.00 0.00 3.27
4666 4681 3.584834 ACTGTGCAGACCAAACAAAAAC 58.415 40.909 6.17 0.00 0.00 2.43
4667 4682 3.951775 ACTGTGCAGACCAAACAAAAA 57.048 38.095 6.17 0.00 0.00 1.94
4668 4683 3.951775 AACTGTGCAGACCAAACAAAA 57.048 38.095 6.17 0.00 0.00 2.44
4669 4684 3.951775 AAACTGTGCAGACCAAACAAA 57.048 38.095 6.17 0.00 0.00 2.83
4670 4685 3.583806 CAAAACTGTGCAGACCAAACAA 58.416 40.909 6.17 0.00 0.00 2.83
4671 4686 2.094286 CCAAAACTGTGCAGACCAAACA 60.094 45.455 6.17 0.00 0.00 2.83
4672 4687 2.539476 CCAAAACTGTGCAGACCAAAC 58.461 47.619 6.17 0.00 0.00 2.93
4673 4688 1.480137 CCCAAAACTGTGCAGACCAAA 59.520 47.619 6.17 0.00 0.00 3.28
4674 4689 1.110442 CCCAAAACTGTGCAGACCAA 58.890 50.000 6.17 0.00 0.00 3.67
4675 4690 0.754957 CCCCAAAACTGTGCAGACCA 60.755 55.000 6.17 0.00 0.00 4.02
4676 4691 0.755327 ACCCCAAAACTGTGCAGACC 60.755 55.000 6.17 0.00 0.00 3.85
4677 4692 1.111277 AACCCCAAAACTGTGCAGAC 58.889 50.000 6.17 0.00 0.00 3.51
4678 4693 1.859302 AAACCCCAAAACTGTGCAGA 58.141 45.000 6.17 0.00 0.00 4.26
4679 4694 2.689553 AAAACCCCAAAACTGTGCAG 57.310 45.000 0.00 0.00 0.00 4.41
4680 4695 3.964031 AGATAAAACCCCAAAACTGTGCA 59.036 39.130 0.00 0.00 0.00 4.57
4681 4696 4.038642 TCAGATAAAACCCCAAAACTGTGC 59.961 41.667 0.00 0.00 0.00 4.57
4682 4697 5.782893 TCAGATAAAACCCCAAAACTGTG 57.217 39.130 0.00 0.00 0.00 3.66
4683 4698 6.994421 AATCAGATAAAACCCCAAAACTGT 57.006 33.333 0.00 0.00 0.00 3.55
4684 4699 6.873605 GGAAATCAGATAAAACCCCAAAACTG 59.126 38.462 0.00 0.00 0.00 3.16
4685 4700 6.787458 AGGAAATCAGATAAAACCCCAAAACT 59.213 34.615 0.00 0.00 0.00 2.66
4686 4701 7.004555 AGGAAATCAGATAAAACCCCAAAAC 57.995 36.000 0.00 0.00 0.00 2.43
4687 4702 7.449247 CAAGGAAATCAGATAAAACCCCAAAA 58.551 34.615 0.00 0.00 0.00 2.44
4688 4703 6.013812 CCAAGGAAATCAGATAAAACCCCAAA 60.014 38.462 0.00 0.00 0.00 3.28
4689 4704 5.483583 CCAAGGAAATCAGATAAAACCCCAA 59.516 40.000 0.00 0.00 0.00 4.12
4690 4705 5.022787 CCAAGGAAATCAGATAAAACCCCA 58.977 41.667 0.00 0.00 0.00 4.96
4691 4706 5.023452 ACCAAGGAAATCAGATAAAACCCC 58.977 41.667 0.00 0.00 0.00 4.95
4692 4707 6.605471 AACCAAGGAAATCAGATAAAACCC 57.395 37.500 0.00 0.00 0.00 4.11
4693 4708 8.902540 AAAAACCAAGGAAATCAGATAAAACC 57.097 30.769 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.