Multiple sequence alignment - TraesCS4D01G141500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G141500
chr4D
100.000
2480
0
0
1
2480
126216212
126218691
0.000000e+00
4580.0
1
TraesCS4D01G141500
chr4A
94.161
1353
60
11
809
2155
444157761
444156422
0.000000e+00
2043.0
2
TraesCS4D01G141500
chr4A
95.796
452
14
3
31
481
444158830
444158383
0.000000e+00
725.0
3
TraesCS4D01G141500
chr4A
88.796
357
29
7
466
817
444158368
444158018
6.340000e-116
427.0
4
TraesCS4D01G141500
chr4A
91.623
191
3
4
2303
2480
444156419
444156229
4.090000e-63
252.0
5
TraesCS4D01G141500
chr4B
95.197
937
28
6
516
1441
190170110
190171040
0.000000e+00
1465.0
6
TraesCS4D01G141500
chr4B
96.454
282
7
1
234
515
190166665
190166387
1.740000e-126
462.0
7
TraesCS4D01G141500
chr4B
81.920
448
63
12
1688
2130
190180712
190181146
1.810000e-96
363.0
8
TraesCS4D01G141500
chr4B
85.019
267
23
5
1437
1686
190173559
190173825
3.170000e-64
255.0
9
TraesCS4D01G141500
chr4B
91.538
130
6
2
1
125
190166257
190166386
9.120000e-40
174.0
10
TraesCS4D01G141500
chr4B
89.565
115
5
2
127
234
190168372
190168258
3.330000e-29
139.0
11
TraesCS4D01G141500
chr4B
89.565
115
5
2
127
234
190170111
190169997
3.330000e-29
139.0
12
TraesCS4D01G141500
chr4B
98.630
73
1
0
516
588
190168371
190168443
2.000000e-26
130.0
13
TraesCS4D01G141500
chr4B
92.308
65
5
0
2153
2217
190181147
190181211
2.630000e-15
93.5
14
TraesCS4D01G141500
chr2B
82.997
347
43
15
1827
2160
363485118
363485461
1.440000e-77
300.0
15
TraesCS4D01G141500
chr2D
81.638
354
48
16
1827
2166
298839704
298839354
6.760000e-71
278.0
16
TraesCS4D01G141500
chr2D
76.240
383
76
11
1789
2159
592182847
592182468
3.260000e-44
189.0
17
TraesCS4D01G141500
chrUn
79.769
346
55
13
1827
2160
85460051
85460393
1.150000e-58
237.0
18
TraesCS4D01G141500
chrUn
87.931
58
7
0
1153
1210
67240943
67241000
4.430000e-08
69.4
19
TraesCS4D01G141500
chr7A
77.451
408
73
18
1773
2167
427556196
427555795
2.480000e-55
226.0
20
TraesCS4D01G141500
chr7A
77.684
354
66
11
1782
2125
725327292
725326942
1.160000e-48
204.0
21
TraesCS4D01G141500
chr7A
79.208
303
50
12
1782
2075
450961268
450961566
5.410000e-47
198.0
22
TraesCS4D01G141500
chr1A
75.987
304
62
10
1774
2071
9243869
9244167
1.990000e-31
147.0
23
TraesCS4D01G141500
chr1A
83.333
108
17
1
1132
1238
482964240
482964133
5.640000e-17
99.0
24
TraesCS4D01G141500
chr1A
82.716
81
10
4
1318
1396
482964081
482964003
4.430000e-08
69.4
25
TraesCS4D01G141500
chr3B
80.337
178
29
6
1875
2049
59359591
59359417
2.000000e-26
130.0
26
TraesCS4D01G141500
chr5D
74.324
222
41
10
1153
1360
525188963
525188744
2.040000e-11
80.5
27
TraesCS4D01G141500
chr5D
89.286
56
6
0
1155
1210
525226764
525226709
1.230000e-08
71.3
28
TraesCS4D01G141500
chr5D
85.075
67
10
0
1144
1210
525253901
525253967
4.430000e-08
69.4
29
TraesCS4D01G141500
chr5D
100.000
35
0
0
1176
1210
525250468
525250502
5.730000e-07
65.8
30
TraesCS4D01G141500
chr5B
88.060
67
8
0
1144
1210
659704592
659704658
2.040000e-11
80.5
31
TraesCS4D01G141500
chr5B
87.931
58
7
0
1153
1210
659557413
659557356
4.430000e-08
69.4
32
TraesCS4D01G141500
chr5B
82.857
70
12
0
1291
1360
659586526
659586457
2.060000e-06
63.9
33
TraesCS4D01G141500
chr5A
73.991
223
40
16
1153
1360
651564222
651564003
9.510000e-10
75.0
34
TraesCS4D01G141500
chr5A
87.931
58
7
0
1153
1210
651555837
651555780
4.430000e-08
69.4
35
TraesCS4D01G141500
chr5A
81.707
82
15
0
1129
1210
651635659
651635740
4.430000e-08
69.4
36
TraesCS4D01G141500
chr1D
90.000
50
5
0
1318
1367
383177944
383177895
5.730000e-07
65.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G141500
chr4D
126216212
126218691
2479
False
4580.000000
4580
100.000000
1
2480
1
chr4D.!!$F1
2479
1
TraesCS4D01G141500
chr4A
444156229
444158830
2601
True
861.750000
2043
92.594000
31
2480
4
chr4A.!!$R1
2449
2
TraesCS4D01G141500
chr4B
190166257
190173825
7568
False
506.000000
1465
92.596000
1
1686
4
chr4B.!!$F1
1685
3
TraesCS4D01G141500
chr4B
190166387
190170111
3724
True
246.666667
462
91.861333
127
515
3
chr4B.!!$R1
388
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
552
5039
0.782384
CGAGCTTACCAACACGTCAC
59.218
55.0
0.0
0.0
0.0
3.67
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2233
9552
0.031857
TCGCACGGAAAAGGTTCGTA
59.968
50.0
0.0
0.0
34.28
3.43
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
100
106
7.069852
CTGATGAGTTTCACCAGTCAATTAG
57.930
40.000
0.00
0.00
33.27
1.73
157
163
5.399301
CAGTACGAACTGCATTTCTTTTTGG
59.601
40.000
14.08
1.27
46.28
3.28
158
164
4.385358
ACGAACTGCATTTCTTTTTGGT
57.615
36.364
14.08
1.84
0.00
3.67
159
165
4.359706
ACGAACTGCATTTCTTTTTGGTC
58.640
39.130
14.08
0.00
0.00
4.02
160
166
4.097892
ACGAACTGCATTTCTTTTTGGTCT
59.902
37.500
14.08
0.00
0.00
3.85
231
2514
1.335689
GCCACACGGTATAGGACGATC
60.336
57.143
0.00
0.00
33.28
3.69
552
5039
0.782384
CGAGCTTACCAACACGTCAC
59.218
55.000
0.00
0.00
0.00
3.67
834
5603
5.047660
AGCTTAGCTTAAGAATCGGATCGAT
60.048
40.000
6.67
0.00
41.89
3.59
1007
5780
6.392625
AATCTAGCTCGCTAGTATGACAAA
57.607
37.500
21.54
4.46
44.59
2.83
1031
5804
0.036164
GTGGCCAGTGGTGATACACA
59.964
55.000
5.11
0.00
43.72
3.72
1113
5886
0.602638
TGATCGGCAAGAACAAGCGT
60.603
50.000
0.00
0.00
0.00
5.07
1433
6207
2.313172
CGTGCCTGTCTGTGTCTGC
61.313
63.158
0.00
0.00
0.00
4.26
1506
8804
9.075678
GGGATTAGTGCTACTGTCTATAAGTTA
57.924
37.037
0.00
0.00
0.00
2.24
1682
8996
4.002906
ACTCAGTTTGAAATCGCCTACA
57.997
40.909
0.00
0.00
0.00
2.74
1729
9043
8.699749
GGAGATGTGCTTAATAACAAAACAAAC
58.300
33.333
0.00
0.00
0.00
2.93
1743
9057
6.172630
ACAAAACAAACAAGCATTTTCTCCT
58.827
32.000
0.00
0.00
0.00
3.69
1771
9085
3.987220
GTGTGAATAGGTGCGCAATTTTT
59.013
39.130
14.00
4.59
0.00
1.94
1774
9088
4.683781
GTGAATAGGTGCGCAATTTTTGAA
59.316
37.500
14.00
0.00
0.00
2.69
1775
9089
5.348451
GTGAATAGGTGCGCAATTTTTGAAT
59.652
36.000
14.00
0.00
0.00
2.57
1779
9093
5.329035
AGGTGCGCAATTTTTGAATATCT
57.671
34.783
14.00
0.00
0.00
1.98
1786
9100
9.022915
TGCGCAATTTTTGAATATCTATTTCTG
57.977
29.630
8.16
0.00
0.00
3.02
1873
9188
8.893563
AAAATCCATCTTTTTACATGGTAGGA
57.106
30.769
0.00
0.00
35.74
2.94
1892
9207
0.673437
AAATTTGGTGCGTGAGGTGG
59.327
50.000
0.00
0.00
0.00
4.61
1905
9220
1.186200
GAGGTGGGCTCCAAATTTCC
58.814
55.000
0.00
0.00
34.18
3.13
1906
9221
0.611896
AGGTGGGCTCCAAATTTCCG
60.612
55.000
0.00
0.00
34.18
4.30
1915
9230
4.555262
GCTCCAAATTTCCGAACATTTGA
58.445
39.130
19.54
11.20
41.18
2.69
1968
9283
3.417069
TTGGGGTCAGAACAGTACATG
57.583
47.619
0.00
0.00
0.00
3.21
1976
9291
5.634020
GGTCAGAACAGTACATGAACAGTAC
59.366
44.000
0.00
0.00
41.59
2.73
1979
9294
6.923508
TCAGAACAGTACATGAACAGTACAAG
59.076
38.462
0.00
1.58
43.24
3.16
1998
9313
6.994421
ACAAGAAATTACAGACCCCAAATT
57.006
33.333
0.00
0.00
0.00
1.82
2057
9373
3.250762
TCTGAAATTTGAAGTGGCTCACG
59.749
43.478
0.00
0.00
39.64
4.35
2166
9485
4.481112
GGGCACCGAATTGCTGCG
62.481
66.667
0.00
0.00
42.56
5.18
2168
9487
4.403137
GCACCGAATTGCTGCGCA
62.403
61.111
10.98
10.98
39.59
6.09
2179
9498
3.641437
TTGCTGCGCAATTTTAGACTT
57.359
38.095
13.05
0.00
43.99
3.01
2180
9499
4.757799
TTGCTGCGCAATTTTAGACTTA
57.242
36.364
13.05
0.00
43.99
2.24
2181
9500
4.757799
TGCTGCGCAATTTTAGACTTAA
57.242
36.364
13.05
0.00
34.76
1.85
2182
9501
5.114785
TGCTGCGCAATTTTAGACTTAAA
57.885
34.783
13.05
0.00
34.76
1.52
2183
9502
5.153513
TGCTGCGCAATTTTAGACTTAAAG
58.846
37.500
13.05
0.00
34.76
1.85
2184
9503
5.154222
GCTGCGCAATTTTAGACTTAAAGT
58.846
37.500
13.05
0.00
30.84
2.66
2185
9504
5.629435
GCTGCGCAATTTTAGACTTAAAGTT
59.371
36.000
13.05
0.00
31.28
2.66
2186
9505
6.398935
GCTGCGCAATTTTAGACTTAAAGTTG
60.399
38.462
13.05
9.53
43.64
3.16
2249
9568
5.010249
GTTTAGTACGAACCTTTTCCGTG
57.990
43.478
0.00
0.00
0.00
4.94
2250
9569
1.505425
AGTACGAACCTTTTCCGTGC
58.495
50.000
0.00
0.00
0.00
5.34
2251
9570
0.162294
GTACGAACCTTTTCCGTGCG
59.838
55.000
0.00
0.00
38.29
5.34
2252
9571
0.031857
TACGAACCTTTTCCGTGCGA
59.968
50.000
0.00
0.00
35.73
5.10
2253
9572
1.203313
CGAACCTTTTCCGTGCGAC
59.797
57.895
0.00
0.00
33.92
5.19
2254
9573
1.492319
CGAACCTTTTCCGTGCGACA
61.492
55.000
0.00
0.00
33.92
4.35
2255
9574
0.041576
GAACCTTTTCCGTGCGACAC
60.042
55.000
0.00
0.00
0.00
3.67
2256
9575
0.745128
AACCTTTTCCGTGCGACACA
60.745
50.000
9.95
0.00
33.40
3.72
2257
9576
0.745128
ACCTTTTCCGTGCGACACAA
60.745
50.000
9.95
0.00
33.40
3.33
2258
9577
0.316689
CCTTTTCCGTGCGACACAAC
60.317
55.000
9.95
0.00
33.40
3.32
2259
9578
0.653323
CTTTTCCGTGCGACACAACG
60.653
55.000
9.95
0.00
33.40
4.10
2260
9579
1.082679
TTTTCCGTGCGACACAACGA
61.083
50.000
9.95
0.82
33.40
3.85
2261
9580
1.484227
TTTCCGTGCGACACAACGAG
61.484
55.000
9.95
0.00
33.40
4.18
2262
9581
4.059459
CCGTGCGACACAACGAGC
62.059
66.667
9.95
0.00
33.40
5.03
2263
9582
3.326981
CGTGCGACACAACGAGCA
61.327
61.111
9.95
0.00
37.26
4.26
2264
9583
2.546321
GTGCGACACAACGAGCAG
59.454
61.111
5.30
0.00
40.53
4.24
2265
9584
2.661537
TGCGACACAACGAGCAGG
60.662
61.111
0.00
0.00
34.39
4.85
2266
9585
2.661866
GCGACACAACGAGCAGGT
60.662
61.111
0.00
0.00
35.09
4.00
2267
9586
2.943345
GCGACACAACGAGCAGGTG
61.943
63.158
0.00
0.00
44.94
4.00
2268
9587
2.310233
CGACACAACGAGCAGGTGG
61.310
63.158
2.37
0.00
43.31
4.61
2269
9588
1.069090
GACACAACGAGCAGGTGGA
59.931
57.895
2.37
0.00
43.31
4.02
2270
9589
0.320771
GACACAACGAGCAGGTGGAT
60.321
55.000
2.37
0.00
43.31
3.41
2271
9590
0.108585
ACACAACGAGCAGGTGGATT
59.891
50.000
2.37
0.00
43.31
3.01
2272
9591
1.238439
CACAACGAGCAGGTGGATTT
58.762
50.000
2.37
0.00
43.31
2.17
2273
9592
2.224426
ACACAACGAGCAGGTGGATTTA
60.224
45.455
2.37
0.00
43.31
1.40
2274
9593
2.416547
CACAACGAGCAGGTGGATTTAG
59.583
50.000
2.37
0.00
43.31
1.85
2275
9594
2.301870
ACAACGAGCAGGTGGATTTAGA
59.698
45.455
2.37
0.00
43.31
2.10
2276
9595
2.673368
CAACGAGCAGGTGGATTTAGAC
59.327
50.000
0.00
0.00
32.78
2.59
2277
9596
1.135083
ACGAGCAGGTGGATTTAGACG
60.135
52.381
0.00
0.00
0.00
4.18
2278
9597
1.135083
CGAGCAGGTGGATTTAGACGT
60.135
52.381
0.00
0.00
0.00
4.34
2279
9598
2.674177
CGAGCAGGTGGATTTAGACGTT
60.674
50.000
0.00
0.00
0.00
3.99
2280
9599
2.673368
GAGCAGGTGGATTTAGACGTTG
59.327
50.000
0.00
0.00
0.00
4.10
2281
9600
1.130561
GCAGGTGGATTTAGACGTTGC
59.869
52.381
0.00
0.00
0.00
4.17
2282
9601
1.737793
CAGGTGGATTTAGACGTTGCC
59.262
52.381
0.00
0.00
0.00
4.52
2283
9602
1.349688
AGGTGGATTTAGACGTTGCCA
59.650
47.619
0.00
0.00
0.00
4.92
2284
9603
1.737793
GGTGGATTTAGACGTTGCCAG
59.262
52.381
0.00
0.00
0.00
4.85
2285
9604
1.737793
GTGGATTTAGACGTTGCCAGG
59.262
52.381
0.00
0.00
0.00
4.45
2286
9605
1.339631
TGGATTTAGACGTTGCCAGGG
60.340
52.381
0.00
0.00
0.00
4.45
2287
9606
1.065709
GGATTTAGACGTTGCCAGGGA
60.066
52.381
0.00
0.00
0.00
4.20
2288
9607
2.007608
GATTTAGACGTTGCCAGGGAC
58.992
52.381
0.00
0.00
0.00
4.46
2289
9608
0.035739
TTTAGACGTTGCCAGGGACC
59.964
55.000
0.00
0.00
0.00
4.46
2290
9609
1.833787
TTAGACGTTGCCAGGGACCC
61.834
60.000
0.59
0.59
0.00
4.46
2291
9610
2.741878
TAGACGTTGCCAGGGACCCT
62.742
60.000
7.44
7.44
0.00
4.34
2300
9619
2.538760
AGGGACCCTGAAGCCAGA
59.461
61.111
13.95
0.00
43.02
3.86
2301
9620
1.151810
AGGGACCCTGAAGCCAGAA
60.152
57.895
13.95
0.00
43.02
3.02
2371
9690
2.136298
TTTGACTTTGCCTGGACACA
57.864
45.000
0.00
0.00
0.00
3.72
2387
9706
7.095910
CCTGGACACACATAAAATATTTGCAA
58.904
34.615
0.39
0.00
0.00
4.08
2393
9712
7.930865
ACACACATAAAATATTTGCAACCAAGT
59.069
29.630
0.00
0.00
31.52
3.16
2394
9713
9.416794
CACACATAAAATATTTGCAACCAAGTA
57.583
29.630
0.00
0.00
31.52
2.24
2396
9715
8.594687
CACATAAAATATTTGCAACCAAGTAGC
58.405
33.333
0.00
0.00
31.52
3.58
2397
9716
8.531146
ACATAAAATATTTGCAACCAAGTAGCT
58.469
29.630
0.00
0.00
31.52
3.32
2439
9771
4.152223
CACAGTGTTGTCGCAGATGAAATA
59.848
41.667
0.00
0.00
40.67
1.40
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
24
25
3.215244
CAACTGTCACAACGTTATTCGC
58.785
45.455
0.00
0.00
44.19
4.70
25
26
4.446857
ACAACTGTCACAACGTTATTCG
57.553
40.909
0.00
0.00
46.00
3.34
38
44
7.639113
TTATTATTGGGATCCAACAACTGTC
57.361
36.000
15.23
0.00
46.95
3.51
80
86
5.305585
GGACTAATTGACTGGTGAAACTCA
58.694
41.667
0.00
0.00
36.74
3.41
100
106
6.541086
ACGTATATATCGATTCAACTCGGAC
58.459
40.000
1.71
0.00
39.13
4.79
157
163
1.466024
CCTAGCGTGTCGTCTTGAGAC
60.466
57.143
1.00
1.00
41.47
3.36
158
164
0.803117
CCTAGCGTGTCGTCTTGAGA
59.197
55.000
0.00
0.00
0.00
3.27
159
165
0.803117
TCCTAGCGTGTCGTCTTGAG
59.197
55.000
0.00
0.00
0.00
3.02
160
166
0.803117
CTCCTAGCGTGTCGTCTTGA
59.197
55.000
0.00
0.00
0.00
3.02
211
2494
0.672342
ATCGTCCTATACCGTGTGGC
59.328
55.000
0.00
0.00
39.70
5.01
388
4845
1.921243
TGCATATCGAACGACTGGTG
58.079
50.000
0.00
0.00
0.00
4.17
389
4846
2.094182
ACTTGCATATCGAACGACTGGT
60.094
45.455
0.00
0.00
0.00
4.00
390
4847
2.535984
GACTTGCATATCGAACGACTGG
59.464
50.000
0.00
0.00
0.00
4.00
391
4848
3.439293
AGACTTGCATATCGAACGACTG
58.561
45.455
0.00
2.06
0.00
3.51
552
5039
5.058613
CGATCTTGAAGCGACGTATGAATAG
59.941
44.000
0.00
0.00
39.75
1.73
654
5141
0.179161
AGCGAGCACTACGTCACATC
60.179
55.000
0.00
0.00
0.00
3.06
655
5142
1.092348
TAGCGAGCACTACGTCACAT
58.908
50.000
0.00
0.00
0.00
3.21
656
5143
1.063616
GATAGCGAGCACTACGTCACA
59.936
52.381
0.00
0.00
0.00
3.58
834
5603
3.396611
GGGGTTTAAGGTGGATATGGCTA
59.603
47.826
0.00
0.00
0.00
3.93
869
5638
5.281727
TGCTTATATATAGGCGCGAATGAG
58.718
41.667
12.10
0.00
38.09
2.90
1007
5780
3.941188
CACCACTGGCCACGTCCT
61.941
66.667
0.00
0.00
0.00
3.85
1031
5804
2.688446
TCTATCAACTTGATCGGCGACT
59.312
45.455
13.76
0.78
38.26
4.18
1506
8804
4.151883
ACCACTACAAATCAACCAATGCT
58.848
39.130
0.00
0.00
0.00
3.79
1608
8921
3.987868
CGCGTATTGGCACTACAATAGAT
59.012
43.478
14.34
0.00
42.24
1.98
1682
8996
4.101585
TCCAAGCGAAATAGATCACCTGAT
59.898
41.667
0.00
0.00
37.51
2.90
1791
9105
5.908268
CTTGAGCAAGTGCAGATGAGTCTG
61.908
50.000
6.00
1.17
45.16
3.51
1851
9166
9.492730
AATTTCCTACCATGTAAAAAGATGGAT
57.507
29.630
8.40
0.00
41.63
3.41
1868
9183
2.161609
CCTCACGCACCAAATTTCCTAC
59.838
50.000
0.00
0.00
0.00
3.18
1873
9188
0.673437
CCACCTCACGCACCAAATTT
59.327
50.000
0.00
0.00
0.00
1.82
1892
9207
3.592898
AATGTTCGGAAATTTGGAGCC
57.407
42.857
0.00
0.00
0.00
4.70
1896
9211
4.742659
ACGTTCAAATGTTCGGAAATTTGG
59.257
37.500
17.61
6.11
41.83
3.28
1905
9220
7.045725
AGTTACTCATACGTTCAAATGTTCG
57.954
36.000
0.00
0.00
0.00
3.95
1906
9221
8.240883
AGAGTTACTCATACGTTCAAATGTTC
57.759
34.615
15.23
0.00
32.06
3.18
1944
9259
4.141287
TGTACTGTTCTGACCCCAATTTG
58.859
43.478
0.00
0.00
0.00
2.32
1953
9268
6.213677
TGTACTGTTCATGTACTGTTCTGAC
58.786
40.000
17.65
11.44
40.44
3.51
1968
9283
6.148976
GGGGTCTGTAATTTCTTGTACTGTTC
59.851
42.308
0.00
0.00
0.00
3.18
1976
9291
7.216494
ACAAATTTGGGGTCTGTAATTTCTTG
58.784
34.615
21.74
0.00
30.17
3.02
1979
9294
6.993079
AGACAAATTTGGGGTCTGTAATTTC
58.007
36.000
21.74
5.91
40.21
2.17
2010
9325
6.104665
TCATTTGACATCTGAGTAGCTCTTG
58.895
40.000
0.00
0.00
0.00
3.02
2011
9326
6.291648
TCATTTGACATCTGAGTAGCTCTT
57.708
37.500
0.00
0.00
0.00
2.85
2128
9446
3.561528
CCTGGCTCATCTGCATCCATAAT
60.562
47.826
0.00
0.00
34.04
1.28
2129
9447
2.224695
CCTGGCTCATCTGCATCCATAA
60.225
50.000
0.00
0.00
34.04
1.90
2131
9449
0.110678
CCTGGCTCATCTGCATCCAT
59.889
55.000
0.00
0.00
34.04
3.41
2162
9481
6.398935
GCAACTTTAAGTCTAAAATTGCGCAG
60.399
38.462
11.31
0.00
45.11
5.18
2163
9482
5.401079
GCAACTTTAAGTCTAAAATTGCGCA
59.599
36.000
5.66
5.66
45.11
6.09
2164
9483
5.832840
GCAACTTTAAGTCTAAAATTGCGC
58.167
37.500
0.00
0.00
45.11
6.09
2210
9529
9.920826
CGTACTAAACGTCAGTTCTATACATAA
57.079
33.333
7.95
0.00
46.72
1.90
2227
9546
4.609113
GCACGGAAAAGGTTCGTACTAAAC
60.609
45.833
0.00
0.00
34.28
2.01
2228
9547
3.494251
GCACGGAAAAGGTTCGTACTAAA
59.506
43.478
0.00
0.00
34.28
1.85
2229
9548
3.059166
GCACGGAAAAGGTTCGTACTAA
58.941
45.455
0.00
0.00
34.28
2.24
2230
9549
2.676076
GCACGGAAAAGGTTCGTACTA
58.324
47.619
0.00
0.00
34.28
1.82
2231
9550
1.505425
GCACGGAAAAGGTTCGTACT
58.495
50.000
0.00
0.00
34.28
2.73
2232
9551
0.162294
CGCACGGAAAAGGTTCGTAC
59.838
55.000
0.00
0.00
34.28
3.67
2233
9552
0.031857
TCGCACGGAAAAGGTTCGTA
59.968
50.000
0.00
0.00
34.28
3.43
2234
9553
1.227321
TCGCACGGAAAAGGTTCGT
60.227
52.632
0.00
0.00
34.28
3.85
2235
9554
1.203313
GTCGCACGGAAAAGGTTCG
59.797
57.895
0.00
0.00
34.28
3.95
2236
9555
0.041576
GTGTCGCACGGAAAAGGTTC
60.042
55.000
0.00
0.00
0.00
3.62
2237
9556
0.745128
TGTGTCGCACGGAAAAGGTT
60.745
50.000
5.69
0.00
37.14
3.50
2238
9557
0.745128
TTGTGTCGCACGGAAAAGGT
60.745
50.000
5.69
0.00
37.14
3.50
2239
9558
0.316689
GTTGTGTCGCACGGAAAAGG
60.317
55.000
5.69
0.00
37.14
3.11
2240
9559
0.653323
CGTTGTGTCGCACGGAAAAG
60.653
55.000
5.69
0.00
37.14
2.27
2241
9560
1.082679
TCGTTGTGTCGCACGGAAAA
61.083
50.000
5.69
0.00
37.14
2.29
2242
9561
1.484227
CTCGTTGTGTCGCACGGAAA
61.484
55.000
5.69
0.00
37.14
3.13
2243
9562
1.947146
CTCGTTGTGTCGCACGGAA
60.947
57.895
5.69
0.00
37.14
4.30
2244
9563
2.354188
CTCGTTGTGTCGCACGGA
60.354
61.111
5.69
3.08
37.14
4.69
2245
9564
4.059459
GCTCGTTGTGTCGCACGG
62.059
66.667
5.69
0.00
37.14
4.94
2246
9565
3.268446
CTGCTCGTTGTGTCGCACG
62.268
63.158
5.69
0.00
37.14
5.34
2247
9566
2.546321
CTGCTCGTTGTGTCGCAC
59.454
61.111
3.44
3.44
34.56
5.34
2248
9567
2.661537
CCTGCTCGTTGTGTCGCA
60.662
61.111
0.00
0.00
0.00
5.10
2249
9568
2.661866
ACCTGCTCGTTGTGTCGC
60.662
61.111
0.00
0.00
0.00
5.19
2250
9569
2.310233
CCACCTGCTCGTTGTGTCG
61.310
63.158
0.00
0.00
0.00
4.35
2251
9570
0.320771
ATCCACCTGCTCGTTGTGTC
60.321
55.000
0.00
0.00
0.00
3.67
2252
9571
0.108585
AATCCACCTGCTCGTTGTGT
59.891
50.000
0.00
0.00
0.00
3.72
2253
9572
1.238439
AAATCCACCTGCTCGTTGTG
58.762
50.000
0.00
0.00
0.00
3.33
2254
9573
2.301870
TCTAAATCCACCTGCTCGTTGT
59.698
45.455
0.00
0.00
0.00
3.32
2255
9574
2.673368
GTCTAAATCCACCTGCTCGTTG
59.327
50.000
0.00
0.00
0.00
4.10
2256
9575
2.674177
CGTCTAAATCCACCTGCTCGTT
60.674
50.000
0.00
0.00
0.00
3.85
2257
9576
1.135083
CGTCTAAATCCACCTGCTCGT
60.135
52.381
0.00
0.00
0.00
4.18
2258
9577
1.135083
ACGTCTAAATCCACCTGCTCG
60.135
52.381
0.00
0.00
0.00
5.03
2259
9578
2.673368
CAACGTCTAAATCCACCTGCTC
59.327
50.000
0.00
0.00
0.00
4.26
2260
9579
2.699954
CAACGTCTAAATCCACCTGCT
58.300
47.619
0.00
0.00
0.00
4.24
2261
9580
1.130561
GCAACGTCTAAATCCACCTGC
59.869
52.381
0.00
0.00
0.00
4.85
2262
9581
1.737793
GGCAACGTCTAAATCCACCTG
59.262
52.381
0.00
0.00
0.00
4.00
2263
9582
1.349688
TGGCAACGTCTAAATCCACCT
59.650
47.619
0.00
0.00
42.51
4.00
2264
9583
1.737793
CTGGCAACGTCTAAATCCACC
59.262
52.381
0.00
0.00
42.51
4.61
2265
9584
1.737793
CCTGGCAACGTCTAAATCCAC
59.262
52.381
0.00
0.00
42.51
4.02
2266
9585
1.339631
CCCTGGCAACGTCTAAATCCA
60.340
52.381
0.00
0.00
42.51
3.41
2267
9586
1.065709
TCCCTGGCAACGTCTAAATCC
60.066
52.381
0.00
0.00
42.51
3.01
2268
9587
2.007608
GTCCCTGGCAACGTCTAAATC
58.992
52.381
0.00
0.00
42.51
2.17
2269
9588
1.339727
GGTCCCTGGCAACGTCTAAAT
60.340
52.381
0.00
0.00
42.51
1.40
2270
9589
0.035739
GGTCCCTGGCAACGTCTAAA
59.964
55.000
0.00
0.00
42.51
1.85
2271
9590
1.675219
GGTCCCTGGCAACGTCTAA
59.325
57.895
0.00
0.00
42.51
2.10
2272
9591
2.288025
GGGTCCCTGGCAACGTCTA
61.288
63.158
0.00
0.00
42.51
2.59
2273
9592
3.637273
GGGTCCCTGGCAACGTCT
61.637
66.667
0.00
0.00
42.51
4.18
2274
9593
3.637273
AGGGTCCCTGGCAACGTC
61.637
66.667
10.61
0.00
42.51
4.34
2283
9602
0.772124
TTTCTGGCTTCAGGGTCCCT
60.772
55.000
3.85
3.85
38.96
4.20
2284
9603
0.332972
ATTTCTGGCTTCAGGGTCCC
59.667
55.000
0.00
0.00
38.96
4.46
2285
9604
3.584733
ATATTTCTGGCTTCAGGGTCC
57.415
47.619
0.00
0.00
38.96
4.46
2286
9605
4.096984
CACAATATTTCTGGCTTCAGGGTC
59.903
45.833
0.00
0.00
38.96
4.46
2287
9606
4.019174
CACAATATTTCTGGCTTCAGGGT
58.981
43.478
0.00
0.00
38.96
4.34
2288
9607
3.382546
CCACAATATTTCTGGCTTCAGGG
59.617
47.826
0.00
0.00
38.96
4.45
2289
9608
3.181483
GCCACAATATTTCTGGCTTCAGG
60.181
47.826
20.25
0.00
46.05
3.86
2290
9609
4.037858
GCCACAATATTTCTGGCTTCAG
57.962
45.455
20.25
0.00
46.05
3.02
2371
9690
8.531146
AGCTACTTGGTTGCAAATATTTTATGT
58.469
29.630
0.00
0.00
36.81
2.29
2387
9706
5.479375
TGTTTAGCAGTACTAGCTACTTGGT
59.521
40.000
19.94
5.72
43.71
3.67
2393
9712
7.039882
GTGGAATTGTTTAGCAGTACTAGCTA
58.960
38.462
17.64
17.64
43.25
3.32
2394
9713
5.875359
GTGGAATTGTTTAGCAGTACTAGCT
59.125
40.000
19.21
19.21
45.77
3.32
2396
9715
6.874134
ACTGTGGAATTGTTTAGCAGTACTAG
59.126
38.462
0.00
0.00
34.47
2.57
2397
9716
6.649141
CACTGTGGAATTGTTTAGCAGTACTA
59.351
38.462
0.00
0.00
34.47
1.82
2398
9717
5.470098
CACTGTGGAATTGTTTAGCAGTACT
59.530
40.000
0.00
0.00
34.47
2.73
2399
9718
5.238650
ACACTGTGGAATTGTTTAGCAGTAC
59.761
40.000
13.09
0.00
34.47
2.73
2439
9771
7.712205
GCATATTTTGGAATGGTTTGCTTATCT
59.288
33.333
0.00
0.00
0.00
1.98
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.