Multiple sequence alignment - TraesCS4D01G137600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G137600 | chr4D | 100.000 | 2718 | 0 | 0 | 1 | 2718 | 123338943 | 123336226 | 0.000000e+00 | 5020 |
1 | TraesCS4D01G137600 | chr4D | 98.392 | 311 | 5 | 0 | 1 | 311 | 135040381 | 135040071 | 5.120000e-152 | 547 |
2 | TraesCS4D01G137600 | chr5A | 99.091 | 2419 | 20 | 2 | 302 | 2718 | 19245671 | 19248089 | 0.000000e+00 | 4344 |
3 | TraesCS4D01G137600 | chr7D | 99.008 | 2419 | 22 | 2 | 302 | 2718 | 381927173 | 381924755 | 0.000000e+00 | 4333 |
4 | TraesCS4D01G137600 | chr7D | 99.008 | 2419 | 22 | 2 | 302 | 2718 | 382053251 | 382050833 | 0.000000e+00 | 4333 |
5 | TraesCS4D01G137600 | chr7D | 98.884 | 2419 | 25 | 2 | 302 | 2718 | 203503171 | 203500753 | 0.000000e+00 | 4316 |
6 | TraesCS4D01G137600 | chr7D | 98.639 | 2424 | 23 | 4 | 302 | 2718 | 381970593 | 381973013 | 0.000000e+00 | 4285 |
7 | TraesCS4D01G137600 | chr6D | 98.719 | 2420 | 28 | 3 | 302 | 2718 | 124520695 | 124518276 | 0.000000e+00 | 4294 |
8 | TraesCS4D01G137600 | chr6D | 98.392 | 311 | 5 | 0 | 1 | 311 | 430477325 | 430477635 | 5.120000e-152 | 547 |
9 | TraesCS4D01G137600 | chr7B | 98.512 | 2419 | 29 | 3 | 302 | 2718 | 716875614 | 716878027 | 0.000000e+00 | 4261 |
10 | TraesCS4D01G137600 | chr7B | 98.471 | 2420 | 29 | 4 | 302 | 2718 | 742992613 | 742990199 | 0.000000e+00 | 4257 |
11 | TraesCS4D01G137600 | chrUn | 98.510 | 2416 | 29 | 3 | 302 | 2715 | 186205254 | 186207664 | 0.000000e+00 | 4255 |
12 | TraesCS4D01G137600 | chrUn | 99.035 | 311 | 3 | 0 | 1 | 311 | 296252896 | 296253206 | 2.360000e-155 | 558 |
13 | TraesCS4D01G137600 | chrUn | 98.392 | 311 | 5 | 0 | 1 | 311 | 246706118 | 246706428 | 5.120000e-152 | 547 |
14 | TraesCS4D01G137600 | chr3D | 98.714 | 311 | 4 | 0 | 1 | 311 | 202633336 | 202633646 | 1.100000e-153 | 553 |
15 | TraesCS4D01G137600 | chr3D | 98.392 | 311 | 5 | 0 | 1 | 311 | 498435951 | 498435641 | 5.120000e-152 | 547 |
16 | TraesCS4D01G137600 | chr1D | 98.714 | 311 | 4 | 0 | 1 | 311 | 141349299 | 141348989 | 1.100000e-153 | 553 |
17 | TraesCS4D01G137600 | chr1D | 98.392 | 311 | 5 | 0 | 1 | 311 | 350969820 | 350969510 | 5.120000e-152 | 547 |
18 | TraesCS4D01G137600 | chr2D | 98.392 | 311 | 5 | 0 | 1 | 311 | 634990743 | 634991053 | 5.120000e-152 | 547 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G137600 | chr4D | 123336226 | 123338943 | 2717 | True | 5020 | 5020 | 100.000 | 1 | 2718 | 1 | chr4D.!!$R1 | 2717 |
1 | TraesCS4D01G137600 | chr5A | 19245671 | 19248089 | 2418 | False | 4344 | 4344 | 99.091 | 302 | 2718 | 1 | chr5A.!!$F1 | 2416 |
2 | TraesCS4D01G137600 | chr7D | 381924755 | 381927173 | 2418 | True | 4333 | 4333 | 99.008 | 302 | 2718 | 1 | chr7D.!!$R2 | 2416 |
3 | TraesCS4D01G137600 | chr7D | 382050833 | 382053251 | 2418 | True | 4333 | 4333 | 99.008 | 302 | 2718 | 1 | chr7D.!!$R3 | 2416 |
4 | TraesCS4D01G137600 | chr7D | 203500753 | 203503171 | 2418 | True | 4316 | 4316 | 98.884 | 302 | 2718 | 1 | chr7D.!!$R1 | 2416 |
5 | TraesCS4D01G137600 | chr7D | 381970593 | 381973013 | 2420 | False | 4285 | 4285 | 98.639 | 302 | 2718 | 1 | chr7D.!!$F1 | 2416 |
6 | TraesCS4D01G137600 | chr6D | 124518276 | 124520695 | 2419 | True | 4294 | 4294 | 98.719 | 302 | 2718 | 1 | chr6D.!!$R1 | 2416 |
7 | TraesCS4D01G137600 | chr7B | 716875614 | 716878027 | 2413 | False | 4261 | 4261 | 98.512 | 302 | 2718 | 1 | chr7B.!!$F1 | 2416 |
8 | TraesCS4D01G137600 | chr7B | 742990199 | 742992613 | 2414 | True | 4257 | 4257 | 98.471 | 302 | 2718 | 1 | chr7B.!!$R1 | 2416 |
9 | TraesCS4D01G137600 | chrUn | 186205254 | 186207664 | 2410 | False | 4255 | 4255 | 98.510 | 302 | 2715 | 1 | chrUn.!!$F1 | 2413 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
280 | 281 | 0.031857 | TTGAAGGCCACACGCAATTG | 59.968 | 50.0 | 5.01 | 0.0 | 40.31 | 2.32 | F |
287 | 288 | 0.238289 | CCACACGCAATTGACTCACC | 59.762 | 55.0 | 10.34 | 0.0 | 0.00 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1659 | 1668 | 0.617820 | ATACTGAGGTGCTCCCCGTT | 60.618 | 55.000 | 0.0 | 0.0 | 0.00 | 4.44 | R |
1984 | 1993 | 2.909965 | GCCGCTTTGGGTTGTGGA | 60.910 | 61.111 | 0.0 | 0.0 | 38.63 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.969443 | CCATTGTCGTCCACAGTTTC | 57.031 | 50.000 | 0.00 | 0.00 | 35.97 | 2.78 |
20 | 21 | 1.535462 | CCATTGTCGTCCACAGTTTCC | 59.465 | 52.381 | 0.00 | 0.00 | 35.97 | 3.13 |
21 | 22 | 2.494059 | CATTGTCGTCCACAGTTTCCT | 58.506 | 47.619 | 0.00 | 0.00 | 35.97 | 3.36 |
22 | 23 | 2.702592 | TTGTCGTCCACAGTTTCCTT | 57.297 | 45.000 | 0.00 | 0.00 | 35.97 | 3.36 |
23 | 24 | 1.948104 | TGTCGTCCACAGTTTCCTTG | 58.052 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
24 | 25 | 1.208535 | TGTCGTCCACAGTTTCCTTGT | 59.791 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
25 | 26 | 1.865340 | GTCGTCCACAGTTTCCTTGTC | 59.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
26 | 27 | 0.859232 | CGTCCACAGTTTCCTTGTCG | 59.141 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
27 | 28 | 1.537348 | CGTCCACAGTTTCCTTGTCGA | 60.537 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
28 | 29 | 1.865340 | GTCCACAGTTTCCTTGTCGAC | 59.135 | 52.381 | 9.11 | 9.11 | 31.40 | 4.20 |
29 | 30 | 0.859232 | CCACAGTTTCCTTGTCGACG | 59.141 | 55.000 | 11.62 | 0.00 | 0.00 | 5.12 |
30 | 31 | 0.232303 | CACAGTTTCCTTGTCGACGC | 59.768 | 55.000 | 11.62 | 0.00 | 0.00 | 5.19 |
31 | 32 | 1.213094 | ACAGTTTCCTTGTCGACGCG | 61.213 | 55.000 | 11.62 | 3.53 | 0.00 | 6.01 |
32 | 33 | 0.937699 | CAGTTTCCTTGTCGACGCGA | 60.938 | 55.000 | 15.93 | 2.92 | 0.00 | 5.87 |
33 | 34 | 0.249155 | AGTTTCCTTGTCGACGCGAA | 60.249 | 50.000 | 15.93 | 9.19 | 37.72 | 4.70 |
34 | 35 | 0.161024 | GTTTCCTTGTCGACGCGAAG | 59.839 | 55.000 | 15.93 | 9.00 | 37.72 | 3.79 |
35 | 36 | 0.942410 | TTTCCTTGTCGACGCGAAGG | 60.942 | 55.000 | 21.47 | 21.47 | 37.72 | 3.46 |
57 | 58 | 4.238062 | AGCAGCCCCCAAGCCAAA | 62.238 | 61.111 | 0.00 | 0.00 | 0.00 | 3.28 |
58 | 59 | 3.698820 | GCAGCCCCCAAGCCAAAG | 61.699 | 66.667 | 0.00 | 0.00 | 0.00 | 2.77 |
59 | 60 | 2.203684 | CAGCCCCCAAGCCAAAGT | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 2.66 |
60 | 61 | 2.118294 | AGCCCCCAAGCCAAAGTC | 59.882 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
61 | 62 | 2.118294 | GCCCCCAAGCCAAAGTCT | 59.882 | 61.111 | 0.00 | 0.00 | 0.00 | 3.24 |
62 | 63 | 2.278330 | GCCCCCAAGCCAAAGTCTG | 61.278 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
63 | 64 | 1.460255 | CCCCCAAGCCAAAGTCTGA | 59.540 | 57.895 | 0.00 | 0.00 | 0.00 | 3.27 |
64 | 65 | 0.610232 | CCCCCAAGCCAAAGTCTGAG | 60.610 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
65 | 66 | 0.401738 | CCCCAAGCCAAAGTCTGAGA | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
66 | 67 | 1.005215 | CCCCAAGCCAAAGTCTGAGAT | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
67 | 68 | 2.363683 | CCCAAGCCAAAGTCTGAGATC | 58.636 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
68 | 69 | 2.290514 | CCCAAGCCAAAGTCTGAGATCA | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
69 | 70 | 3.008330 | CCAAGCCAAAGTCTGAGATCAG | 58.992 | 50.000 | 3.33 | 3.33 | 45.08 | 2.90 |
81 | 82 | 3.637432 | CTGAGATCAGAACTCATACCGC | 58.363 | 50.000 | 10.63 | 0.00 | 46.59 | 5.68 |
82 | 83 | 3.023832 | TGAGATCAGAACTCATACCGCA | 58.976 | 45.455 | 6.29 | 0.00 | 39.10 | 5.69 |
83 | 84 | 3.067320 | TGAGATCAGAACTCATACCGCAG | 59.933 | 47.826 | 6.29 | 0.00 | 39.10 | 5.18 |
84 | 85 | 3.027412 | AGATCAGAACTCATACCGCAGT | 58.973 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
85 | 86 | 3.449018 | AGATCAGAACTCATACCGCAGTT | 59.551 | 43.478 | 0.00 | 0.00 | 35.48 | 3.16 |
86 | 87 | 2.959516 | TCAGAACTCATACCGCAGTTG | 58.040 | 47.619 | 0.00 | 0.00 | 32.83 | 3.16 |
87 | 88 | 2.299013 | TCAGAACTCATACCGCAGTTGT | 59.701 | 45.455 | 0.00 | 0.00 | 32.83 | 3.32 |
88 | 89 | 2.413112 | CAGAACTCATACCGCAGTTGTG | 59.587 | 50.000 | 0.00 | 0.00 | 37.50 | 3.33 |
95 | 96 | 3.431055 | CCGCAGTTGTGGCTTGAA | 58.569 | 55.556 | 0.00 | 0.00 | 39.04 | 2.69 |
96 | 97 | 1.283793 | CCGCAGTTGTGGCTTGAAG | 59.716 | 57.895 | 0.00 | 0.00 | 39.04 | 3.02 |
97 | 98 | 1.283793 | CGCAGTTGTGGCTTGAAGG | 59.716 | 57.895 | 0.00 | 0.00 | 0.00 | 3.46 |
98 | 99 | 1.006922 | GCAGTTGTGGCTTGAAGGC | 60.007 | 57.895 | 12.27 | 12.27 | 41.77 | 4.35 |
105 | 106 | 4.503314 | GGCTTGAAGGCCGCATGC | 62.503 | 66.667 | 22.66 | 22.66 | 42.82 | 4.06 |
106 | 107 | 3.751246 | GCTTGAAGGCCGCATGCA | 61.751 | 61.111 | 24.52 | 7.94 | 43.89 | 3.96 |
107 | 108 | 2.964174 | CTTGAAGGCCGCATGCAA | 59.036 | 55.556 | 19.57 | 0.00 | 43.89 | 4.08 |
108 | 109 | 1.153901 | CTTGAAGGCCGCATGCAAG | 60.154 | 57.895 | 19.57 | 11.25 | 43.89 | 4.01 |
109 | 110 | 1.870055 | CTTGAAGGCCGCATGCAAGT | 61.870 | 55.000 | 19.57 | 0.00 | 43.89 | 3.16 |
110 | 111 | 1.462731 | TTGAAGGCCGCATGCAAGTT | 61.463 | 50.000 | 19.57 | 4.85 | 43.89 | 2.66 |
111 | 112 | 1.153958 | GAAGGCCGCATGCAAGTTC | 60.154 | 57.895 | 19.57 | 10.54 | 43.89 | 3.01 |
112 | 113 | 1.589716 | GAAGGCCGCATGCAAGTTCT | 61.590 | 55.000 | 19.57 | 7.56 | 43.89 | 3.01 |
113 | 114 | 1.181098 | AAGGCCGCATGCAAGTTCTT | 61.181 | 50.000 | 19.57 | 12.61 | 43.89 | 2.52 |
114 | 115 | 1.153958 | GGCCGCATGCAAGTTCTTC | 60.154 | 57.895 | 19.57 | 0.00 | 43.89 | 2.87 |
115 | 116 | 1.580942 | GCCGCATGCAAGTTCTTCA | 59.419 | 52.632 | 19.57 | 0.00 | 40.77 | 3.02 |
116 | 117 | 0.039256 | GCCGCATGCAAGTTCTTCAA | 60.039 | 50.000 | 19.57 | 0.00 | 40.77 | 2.69 |
117 | 118 | 1.403249 | GCCGCATGCAAGTTCTTCAAT | 60.403 | 47.619 | 19.57 | 0.00 | 40.77 | 2.57 |
118 | 119 | 2.159393 | GCCGCATGCAAGTTCTTCAATA | 60.159 | 45.455 | 19.57 | 0.00 | 40.77 | 1.90 |
119 | 120 | 3.489738 | GCCGCATGCAAGTTCTTCAATAT | 60.490 | 43.478 | 19.57 | 0.00 | 40.77 | 1.28 |
120 | 121 | 4.675510 | CCGCATGCAAGTTCTTCAATATT | 58.324 | 39.130 | 19.57 | 0.00 | 0.00 | 1.28 |
121 | 122 | 5.104374 | CCGCATGCAAGTTCTTCAATATTT | 58.896 | 37.500 | 19.57 | 0.00 | 0.00 | 1.40 |
122 | 123 | 6.264832 | CCGCATGCAAGTTCTTCAATATTTA | 58.735 | 36.000 | 19.57 | 0.00 | 0.00 | 1.40 |
123 | 124 | 6.415867 | CCGCATGCAAGTTCTTCAATATTTAG | 59.584 | 38.462 | 19.57 | 0.00 | 0.00 | 1.85 |
124 | 125 | 7.188834 | CGCATGCAAGTTCTTCAATATTTAGA | 58.811 | 34.615 | 19.57 | 0.00 | 0.00 | 2.10 |
125 | 126 | 7.375280 | CGCATGCAAGTTCTTCAATATTTAGAG | 59.625 | 37.037 | 19.57 | 0.00 | 0.00 | 2.43 |
126 | 127 | 8.400947 | GCATGCAAGTTCTTCAATATTTAGAGA | 58.599 | 33.333 | 14.21 | 0.00 | 0.00 | 3.10 |
127 | 128 | 9.932699 | CATGCAAGTTCTTCAATATTTAGAGAG | 57.067 | 33.333 | 0.00 | 0.00 | 0.00 | 3.20 |
128 | 129 | 9.678260 | ATGCAAGTTCTTCAATATTTAGAGAGT | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
147 | 148 | 7.921787 | AGAGAGTATGTGTTAGTACAAGATCG | 58.078 | 38.462 | 0.00 | 0.00 | 35.69 | 3.69 |
148 | 149 | 6.496571 | AGAGTATGTGTTAGTACAAGATCGC | 58.503 | 40.000 | 0.00 | 0.00 | 35.69 | 4.58 |
149 | 150 | 5.271625 | AGTATGTGTTAGTACAAGATCGCG | 58.728 | 41.667 | 0.00 | 0.00 | 35.69 | 5.87 |
150 | 151 | 2.256174 | TGTGTTAGTACAAGATCGCGC | 58.744 | 47.619 | 0.00 | 0.00 | 35.69 | 6.86 |
151 | 152 | 2.094906 | TGTGTTAGTACAAGATCGCGCT | 60.095 | 45.455 | 5.56 | 0.00 | 35.69 | 5.92 |
152 | 153 | 3.127376 | TGTGTTAGTACAAGATCGCGCTA | 59.873 | 43.478 | 5.56 | 0.00 | 35.69 | 4.26 |
153 | 154 | 4.201980 | TGTGTTAGTACAAGATCGCGCTAT | 60.202 | 41.667 | 5.56 | 0.00 | 35.69 | 2.97 |
154 | 155 | 4.379204 | GTGTTAGTACAAGATCGCGCTATC | 59.621 | 45.833 | 13.69 | 13.69 | 35.69 | 2.08 |
155 | 156 | 4.035909 | TGTTAGTACAAGATCGCGCTATCA | 59.964 | 41.667 | 22.25 | 0.33 | 0.00 | 2.15 |
156 | 157 | 3.710326 | AGTACAAGATCGCGCTATCAA | 57.290 | 42.857 | 22.25 | 3.86 | 0.00 | 2.57 |
157 | 158 | 3.372954 | AGTACAAGATCGCGCTATCAAC | 58.627 | 45.455 | 22.25 | 14.18 | 0.00 | 3.18 |
158 | 159 | 2.586258 | ACAAGATCGCGCTATCAACT | 57.414 | 45.000 | 22.25 | 5.21 | 0.00 | 3.16 |
159 | 160 | 2.893637 | ACAAGATCGCGCTATCAACTT | 58.106 | 42.857 | 22.25 | 6.85 | 0.00 | 2.66 |
160 | 161 | 4.041740 | ACAAGATCGCGCTATCAACTTA | 57.958 | 40.909 | 22.25 | 0.00 | 0.00 | 2.24 |
161 | 162 | 4.621991 | ACAAGATCGCGCTATCAACTTAT | 58.378 | 39.130 | 22.25 | 0.00 | 0.00 | 1.73 |
162 | 163 | 5.050490 | ACAAGATCGCGCTATCAACTTATT | 58.950 | 37.500 | 22.25 | 5.50 | 0.00 | 1.40 |
163 | 164 | 5.523916 | ACAAGATCGCGCTATCAACTTATTT | 59.476 | 36.000 | 22.25 | 4.83 | 0.00 | 1.40 |
164 | 165 | 5.830900 | AGATCGCGCTATCAACTTATTTC | 57.169 | 39.130 | 22.25 | 0.00 | 0.00 | 2.17 |
165 | 166 | 5.289595 | AGATCGCGCTATCAACTTATTTCA | 58.710 | 37.500 | 22.25 | 0.00 | 0.00 | 2.69 |
166 | 167 | 5.928839 | AGATCGCGCTATCAACTTATTTCAT | 59.071 | 36.000 | 22.25 | 0.00 | 0.00 | 2.57 |
167 | 168 | 5.576337 | TCGCGCTATCAACTTATTTCATC | 57.424 | 39.130 | 5.56 | 0.00 | 0.00 | 2.92 |
168 | 169 | 5.289595 | TCGCGCTATCAACTTATTTCATCT | 58.710 | 37.500 | 5.56 | 0.00 | 0.00 | 2.90 |
169 | 170 | 5.753438 | TCGCGCTATCAACTTATTTCATCTT | 59.247 | 36.000 | 5.56 | 0.00 | 0.00 | 2.40 |
170 | 171 | 6.257849 | TCGCGCTATCAACTTATTTCATCTTT | 59.742 | 34.615 | 5.56 | 0.00 | 0.00 | 2.52 |
171 | 172 | 6.571520 | CGCGCTATCAACTTATTTCATCTTTC | 59.428 | 38.462 | 5.56 | 0.00 | 0.00 | 2.62 |
172 | 173 | 7.517417 | CGCGCTATCAACTTATTTCATCTTTCT | 60.517 | 37.037 | 5.56 | 0.00 | 0.00 | 2.52 |
173 | 174 | 7.796197 | GCGCTATCAACTTATTTCATCTTTCTC | 59.204 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
174 | 175 | 8.000991 | CGCTATCAACTTATTTCATCTTTCTCG | 58.999 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
175 | 176 | 9.035607 | GCTATCAACTTATTTCATCTTTCTCGA | 57.964 | 33.333 | 0.00 | 0.00 | 0.00 | 4.04 |
178 | 179 | 9.605275 | ATCAACTTATTTCATCTTTCTCGATGA | 57.395 | 29.630 | 0.00 | 0.00 | 45.84 | 2.92 |
179 | 180 | 9.605275 | TCAACTTATTTCATCTTTCTCGATGAT | 57.395 | 29.630 | 4.53 | 0.00 | 46.49 | 2.45 |
185 | 186 | 8.600449 | ATTTCATCTTTCTCGATGATTAGGAC | 57.400 | 34.615 | 4.53 | 0.00 | 46.49 | 3.85 |
186 | 187 | 6.715347 | TCATCTTTCTCGATGATTAGGACA | 57.285 | 37.500 | 0.00 | 0.00 | 43.47 | 4.02 |
187 | 188 | 7.112452 | TCATCTTTCTCGATGATTAGGACAA | 57.888 | 36.000 | 0.00 | 0.00 | 43.47 | 3.18 |
188 | 189 | 7.555965 | TCATCTTTCTCGATGATTAGGACAAA | 58.444 | 34.615 | 0.00 | 0.00 | 43.47 | 2.83 |
189 | 190 | 8.040727 | TCATCTTTCTCGATGATTAGGACAAAA | 58.959 | 33.333 | 0.00 | 0.00 | 43.47 | 2.44 |
190 | 191 | 8.834465 | CATCTTTCTCGATGATTAGGACAAAAT | 58.166 | 33.333 | 0.00 | 0.00 | 42.63 | 1.82 |
191 | 192 | 8.792830 | TCTTTCTCGATGATTAGGACAAAATT | 57.207 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
192 | 193 | 8.668353 | TCTTTCTCGATGATTAGGACAAAATTG | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
193 | 194 | 7.921786 | TTCTCGATGATTAGGACAAAATTGT | 57.078 | 32.000 | 0.00 | 0.00 | 45.65 | 2.71 |
194 | 195 | 9.443323 | TTTCTCGATGATTAGGACAAAATTGTA | 57.557 | 29.630 | 0.00 | 0.00 | 42.43 | 2.41 |
195 | 196 | 9.613428 | TTCTCGATGATTAGGACAAAATTGTAT | 57.387 | 29.630 | 0.00 | 0.00 | 42.43 | 2.29 |
196 | 197 | 9.261180 | TCTCGATGATTAGGACAAAATTGTATC | 57.739 | 33.333 | 0.00 | 0.00 | 42.43 | 2.24 |
197 | 198 | 8.378172 | TCGATGATTAGGACAAAATTGTATCC | 57.622 | 34.615 | 0.00 | 0.00 | 42.43 | 2.59 |
198 | 199 | 7.444183 | TCGATGATTAGGACAAAATTGTATCCC | 59.556 | 37.037 | 0.00 | 0.00 | 42.43 | 3.85 |
199 | 200 | 7.445402 | CGATGATTAGGACAAAATTGTATCCCT | 59.555 | 37.037 | 9.24 | 9.24 | 42.43 | 4.20 |
200 | 201 | 9.136323 | GATGATTAGGACAAAATTGTATCCCTT | 57.864 | 33.333 | 9.48 | 0.00 | 42.43 | 3.95 |
202 | 203 | 9.627123 | TGATTAGGACAAAATTGTATCCCTTAG | 57.373 | 33.333 | 9.48 | 0.00 | 42.43 | 2.18 |
203 | 204 | 8.996651 | ATTAGGACAAAATTGTATCCCTTAGG | 57.003 | 34.615 | 9.48 | 0.00 | 42.43 | 2.69 |
204 | 205 | 6.652205 | AGGACAAAATTGTATCCCTTAGGA | 57.348 | 37.500 | 0.00 | 0.00 | 44.15 | 2.94 |
205 | 206 | 7.039722 | AGGACAAAATTGTATCCCTTAGGAA | 57.960 | 36.000 | 0.00 | 0.00 | 43.57 | 3.36 |
206 | 207 | 6.890268 | AGGACAAAATTGTATCCCTTAGGAAC | 59.110 | 38.462 | 0.00 | 0.00 | 43.57 | 3.62 |
207 | 208 | 6.096423 | GGACAAAATTGTATCCCTTAGGAACC | 59.904 | 42.308 | 0.00 | 0.00 | 43.57 | 3.62 |
208 | 209 | 5.650703 | ACAAAATTGTATCCCTTAGGAACCG | 59.349 | 40.000 | 0.00 | 0.00 | 38.89 | 4.44 |
209 | 210 | 6.748908 | ACAAAATTGTATCCCTTAGGAACCGT | 60.749 | 38.462 | 0.00 | 0.00 | 38.89 | 4.83 |
210 | 211 | 7.529220 | ACAAAATTGTATCCCTTAGGAACCGTA | 60.529 | 37.037 | 0.00 | 0.00 | 38.89 | 4.02 |
215 | 216 | 1.483415 | TCCCTTAGGAACCGTACATGC | 59.517 | 52.381 | 0.00 | 0.00 | 40.08 | 4.06 |
216 | 217 | 1.208535 | CCCTTAGGAACCGTACATGCA | 59.791 | 52.381 | 0.00 | 0.00 | 33.47 | 3.96 |
217 | 218 | 2.277084 | CCTTAGGAACCGTACATGCAC | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
218 | 219 | 2.277084 | CTTAGGAACCGTACATGCACC | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
219 | 220 | 1.563924 | TAGGAACCGTACATGCACCT | 58.436 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
220 | 221 | 0.690762 | AGGAACCGTACATGCACCTT | 59.309 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
221 | 222 | 1.073284 | AGGAACCGTACATGCACCTTT | 59.927 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
222 | 223 | 1.199097 | GGAACCGTACATGCACCTTTG | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 2.77 |
223 | 224 | 1.877443 | GAACCGTACATGCACCTTTGT | 59.123 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
224 | 225 | 1.975660 | ACCGTACATGCACCTTTGTT | 58.024 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
225 | 226 | 2.303175 | ACCGTACATGCACCTTTGTTT | 58.697 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
226 | 227 | 2.034053 | ACCGTACATGCACCTTTGTTTG | 59.966 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
227 | 228 | 2.606795 | CCGTACATGCACCTTTGTTTGG | 60.607 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
228 | 229 | 2.292016 | CGTACATGCACCTTTGTTTGGA | 59.708 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
229 | 230 | 3.057596 | CGTACATGCACCTTTGTTTGGAT | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
230 | 231 | 3.389925 | ACATGCACCTTTGTTTGGATG | 57.610 | 42.857 | 0.00 | 1.99 | 44.63 | 3.51 |
231 | 232 | 2.070783 | CATGCACCTTTGTTTGGATGC | 58.929 | 47.619 | 0.00 | 0.00 | 35.19 | 3.91 |
232 | 233 | 0.392336 | TGCACCTTTGTTTGGATGCC | 59.608 | 50.000 | 0.00 | 0.00 | 33.70 | 4.40 |
233 | 234 | 0.667184 | GCACCTTTGTTTGGATGCCG | 60.667 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
234 | 235 | 0.958091 | CACCTTTGTTTGGATGCCGA | 59.042 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
235 | 236 | 1.545582 | CACCTTTGTTTGGATGCCGAT | 59.454 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
236 | 237 | 1.818674 | ACCTTTGTTTGGATGCCGATC | 59.181 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
237 | 238 | 2.094675 | CCTTTGTTTGGATGCCGATCT | 58.905 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
238 | 239 | 3.278574 | CCTTTGTTTGGATGCCGATCTA | 58.721 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
239 | 240 | 3.694072 | CCTTTGTTTGGATGCCGATCTAA | 59.306 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
240 | 241 | 4.339247 | CCTTTGTTTGGATGCCGATCTAAT | 59.661 | 41.667 | 0.00 | 0.00 | 29.90 | 1.73 |
241 | 242 | 5.530915 | CCTTTGTTTGGATGCCGATCTAATA | 59.469 | 40.000 | 0.00 | 0.00 | 29.90 | 0.98 |
242 | 243 | 6.207417 | CCTTTGTTTGGATGCCGATCTAATAT | 59.793 | 38.462 | 0.00 | 0.00 | 29.90 | 1.28 |
243 | 244 | 7.255590 | CCTTTGTTTGGATGCCGATCTAATATT | 60.256 | 37.037 | 0.00 | 0.00 | 29.90 | 1.28 |
244 | 245 | 6.558771 | TGTTTGGATGCCGATCTAATATTG | 57.441 | 37.500 | 0.00 | 0.00 | 29.90 | 1.90 |
245 | 246 | 6.061441 | TGTTTGGATGCCGATCTAATATTGT | 58.939 | 36.000 | 0.00 | 0.00 | 29.90 | 2.71 |
246 | 247 | 6.545666 | TGTTTGGATGCCGATCTAATATTGTT | 59.454 | 34.615 | 0.00 | 0.00 | 29.90 | 2.83 |
247 | 248 | 7.717436 | TGTTTGGATGCCGATCTAATATTGTTA | 59.283 | 33.333 | 0.00 | 0.00 | 29.90 | 2.41 |
248 | 249 | 7.667043 | TTGGATGCCGATCTAATATTGTTAC | 57.333 | 36.000 | 0.00 | 0.00 | 0.00 | 2.50 |
249 | 250 | 6.764379 | TGGATGCCGATCTAATATTGTTACA | 58.236 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
250 | 251 | 7.220740 | TGGATGCCGATCTAATATTGTTACAA | 58.779 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
251 | 252 | 7.882791 | TGGATGCCGATCTAATATTGTTACAAT | 59.117 | 33.333 | 15.22 | 15.22 | 0.00 | 2.71 |
252 | 253 | 9.378551 | GGATGCCGATCTAATATTGTTACAATA | 57.621 | 33.333 | 18.47 | 18.47 | 0.00 | 1.90 |
254 | 255 | 8.234887 | TGCCGATCTAATATTGTTACAATACG | 57.765 | 34.615 | 18.53 | 15.40 | 0.00 | 3.06 |
255 | 256 | 8.083462 | TGCCGATCTAATATTGTTACAATACGA | 58.917 | 33.333 | 18.53 | 15.03 | 0.00 | 3.43 |
256 | 257 | 8.918658 | GCCGATCTAATATTGTTACAATACGAA | 58.081 | 33.333 | 18.53 | 7.57 | 0.00 | 3.85 |
268 | 269 | 7.745015 | TGTTACAATACGAAATACTTGAAGGC | 58.255 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
269 | 270 | 5.813080 | ACAATACGAAATACTTGAAGGCC | 57.187 | 39.130 | 0.00 | 0.00 | 0.00 | 5.19 |
270 | 271 | 5.250200 | ACAATACGAAATACTTGAAGGCCA | 58.750 | 37.500 | 5.01 | 0.00 | 0.00 | 5.36 |
271 | 272 | 5.123344 | ACAATACGAAATACTTGAAGGCCAC | 59.877 | 40.000 | 5.01 | 0.00 | 0.00 | 5.01 |
272 | 273 | 3.134574 | ACGAAATACTTGAAGGCCACA | 57.865 | 42.857 | 5.01 | 1.11 | 0.00 | 4.17 |
273 | 274 | 2.812011 | ACGAAATACTTGAAGGCCACAC | 59.188 | 45.455 | 5.01 | 0.00 | 0.00 | 3.82 |
274 | 275 | 2.159707 | CGAAATACTTGAAGGCCACACG | 60.160 | 50.000 | 5.01 | 5.15 | 0.00 | 4.49 |
275 | 276 | 1.165270 | AATACTTGAAGGCCACACGC | 58.835 | 50.000 | 5.01 | 0.00 | 0.00 | 5.34 |
276 | 277 | 0.036164 | ATACTTGAAGGCCACACGCA | 59.964 | 50.000 | 5.01 | 0.00 | 40.31 | 5.24 |
277 | 278 | 0.179043 | TACTTGAAGGCCACACGCAA | 60.179 | 50.000 | 5.01 | 0.31 | 40.31 | 4.85 |
278 | 279 | 0.823356 | ACTTGAAGGCCACACGCAAT | 60.823 | 50.000 | 5.01 | 0.00 | 40.31 | 3.56 |
279 | 280 | 0.314935 | CTTGAAGGCCACACGCAATT | 59.685 | 50.000 | 5.01 | 0.00 | 40.31 | 2.32 |
280 | 281 | 0.031857 | TTGAAGGCCACACGCAATTG | 59.968 | 50.000 | 5.01 | 0.00 | 40.31 | 2.32 |
281 | 282 | 0.821301 | TGAAGGCCACACGCAATTGA | 60.821 | 50.000 | 10.34 | 0.00 | 40.31 | 2.57 |
282 | 283 | 0.387239 | GAAGGCCACACGCAATTGAC | 60.387 | 55.000 | 10.34 | 0.00 | 40.31 | 3.18 |
283 | 284 | 0.823356 | AAGGCCACACGCAATTGACT | 60.823 | 50.000 | 10.34 | 0.00 | 40.31 | 3.41 |
284 | 285 | 1.210155 | GGCCACACGCAATTGACTC | 59.790 | 57.895 | 10.34 | 0.00 | 40.31 | 3.36 |
285 | 286 | 1.514678 | GGCCACACGCAATTGACTCA | 61.515 | 55.000 | 10.34 | 0.00 | 40.31 | 3.41 |
286 | 287 | 0.385974 | GCCACACGCAATTGACTCAC | 60.386 | 55.000 | 10.34 | 0.00 | 37.47 | 3.51 |
287 | 288 | 0.238289 | CCACACGCAATTGACTCACC | 59.762 | 55.000 | 10.34 | 0.00 | 0.00 | 4.02 |
288 | 289 | 1.229428 | CACACGCAATTGACTCACCT | 58.771 | 50.000 | 10.34 | 0.00 | 0.00 | 4.00 |
289 | 290 | 2.412870 | CACACGCAATTGACTCACCTA | 58.587 | 47.619 | 10.34 | 0.00 | 0.00 | 3.08 |
290 | 291 | 2.157668 | CACACGCAATTGACTCACCTAC | 59.842 | 50.000 | 10.34 | 0.00 | 0.00 | 3.18 |
291 | 292 | 2.224185 | ACACGCAATTGACTCACCTACA | 60.224 | 45.455 | 10.34 | 0.00 | 0.00 | 2.74 |
292 | 293 | 3.002791 | CACGCAATTGACTCACCTACAT | 58.997 | 45.455 | 10.34 | 0.00 | 0.00 | 2.29 |
293 | 294 | 3.436704 | CACGCAATTGACTCACCTACATT | 59.563 | 43.478 | 10.34 | 0.00 | 0.00 | 2.71 |
294 | 295 | 4.072131 | ACGCAATTGACTCACCTACATTT | 58.928 | 39.130 | 10.34 | 0.00 | 0.00 | 2.32 |
295 | 296 | 4.518970 | ACGCAATTGACTCACCTACATTTT | 59.481 | 37.500 | 10.34 | 0.00 | 0.00 | 1.82 |
296 | 297 | 5.703592 | ACGCAATTGACTCACCTACATTTTA | 59.296 | 36.000 | 10.34 | 0.00 | 0.00 | 1.52 |
297 | 298 | 6.374333 | ACGCAATTGACTCACCTACATTTTAT | 59.626 | 34.615 | 10.34 | 0.00 | 0.00 | 1.40 |
298 | 299 | 6.688385 | CGCAATTGACTCACCTACATTTTATG | 59.312 | 38.462 | 10.34 | 0.00 | 0.00 | 1.90 |
299 | 300 | 6.473455 | GCAATTGACTCACCTACATTTTATGC | 59.527 | 38.462 | 10.34 | 0.00 | 0.00 | 3.14 |
300 | 301 | 7.629222 | GCAATTGACTCACCTACATTTTATGCT | 60.629 | 37.037 | 10.34 | 0.00 | 0.00 | 3.79 |
369 | 370 | 4.978083 | ATGAACTGAGTGCCATTTGATC | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
377 | 378 | 5.559770 | TGAGTGCCATTTGATCAGTAAGAA | 58.440 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
415 | 416 | 7.694093 | AGGGATATGGAAAGGATGAAGTAATC | 58.306 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
578 | 579 | 4.614967 | AGGGGGTACTAACTAACAGCTA | 57.385 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
1659 | 1668 | 2.526993 | CGCGTCGTTCCAACAACCA | 61.527 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
1895 | 1904 | 0.102300 | GTGCACGGAAAACTGCCTTT | 59.898 | 50.000 | 0.00 | 0.00 | 31.97 | 3.11 |
1918 | 1927 | 2.572104 | GTCTCCCAACCTTACTCATGGT | 59.428 | 50.000 | 0.00 | 0.00 | 38.35 | 3.55 |
1925 | 1934 | 5.321927 | CCAACCTTACTCATGGTAACCTTT | 58.678 | 41.667 | 0.00 | 0.00 | 35.69 | 3.11 |
1984 | 1993 | 1.273896 | ACTGGGGCTAGGAAGTAAGCT | 60.274 | 52.381 | 0.00 | 0.00 | 38.80 | 3.74 |
2073 | 2082 | 5.182487 | TGCGTATGAGAACATTGTAATGGT | 58.818 | 37.500 | 9.22 | 2.13 | 39.49 | 3.55 |
2111 | 2120 | 6.202954 | CGAAATAGGATTCGTTTTGGCTAGAT | 59.797 | 38.462 | 0.00 | 0.00 | 45.32 | 1.98 |
2113 | 2122 | 4.762289 | AGGATTCGTTTTGGCTAGATCT | 57.238 | 40.909 | 0.00 | 0.00 | 0.00 | 2.75 |
2238 | 2247 | 7.405292 | AGTGATTGAATTCCTTCTATGGTTCA | 58.595 | 34.615 | 2.27 | 0.00 | 32.29 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.535462 | GGAAACTGTGGACGACAATGG | 59.465 | 52.381 | 0.00 | 0.00 | 32.80 | 3.16 |
1 | 2 | 2.494059 | AGGAAACTGTGGACGACAATG | 58.506 | 47.619 | 0.00 | 0.00 | 41.13 | 2.82 |
2 | 3 | 2.878406 | CAAGGAAACTGTGGACGACAAT | 59.122 | 45.455 | 0.00 | 0.00 | 42.68 | 2.71 |
3 | 4 | 2.285083 | CAAGGAAACTGTGGACGACAA | 58.715 | 47.619 | 0.00 | 0.00 | 42.68 | 3.18 |
4 | 5 | 1.208535 | ACAAGGAAACTGTGGACGACA | 59.791 | 47.619 | 0.00 | 0.00 | 42.68 | 4.35 |
5 | 6 | 1.865340 | GACAAGGAAACTGTGGACGAC | 59.135 | 52.381 | 0.00 | 0.00 | 42.68 | 4.34 |
6 | 7 | 1.537348 | CGACAAGGAAACTGTGGACGA | 60.537 | 52.381 | 0.00 | 0.00 | 42.68 | 4.20 |
7 | 8 | 0.859232 | CGACAAGGAAACTGTGGACG | 59.141 | 55.000 | 0.00 | 0.00 | 42.68 | 4.79 |
8 | 9 | 1.865340 | GTCGACAAGGAAACTGTGGAC | 59.135 | 52.381 | 11.55 | 2.99 | 42.68 | 4.02 |
9 | 10 | 1.537348 | CGTCGACAAGGAAACTGTGGA | 60.537 | 52.381 | 17.16 | 0.00 | 42.68 | 4.02 |
10 | 11 | 0.859232 | CGTCGACAAGGAAACTGTGG | 59.141 | 55.000 | 17.16 | 0.00 | 42.68 | 4.17 |
11 | 12 | 0.232303 | GCGTCGACAAGGAAACTGTG | 59.768 | 55.000 | 17.16 | 0.00 | 42.68 | 3.66 |
12 | 13 | 1.213094 | CGCGTCGACAAGGAAACTGT | 61.213 | 55.000 | 17.16 | 0.00 | 42.68 | 3.55 |
13 | 14 | 0.937699 | TCGCGTCGACAAGGAAACTG | 60.938 | 55.000 | 17.16 | 0.00 | 42.68 | 3.16 |
14 | 15 | 0.249155 | TTCGCGTCGACAAGGAAACT | 60.249 | 50.000 | 17.16 | 0.00 | 37.87 | 2.66 |
15 | 16 | 0.161024 | CTTCGCGTCGACAAGGAAAC | 59.839 | 55.000 | 17.16 | 0.00 | 34.89 | 2.78 |
16 | 17 | 0.942410 | CCTTCGCGTCGACAAGGAAA | 60.942 | 55.000 | 22.52 | 6.52 | 36.36 | 3.13 |
17 | 18 | 1.372499 | CCTTCGCGTCGACAAGGAA | 60.372 | 57.895 | 22.52 | 16.63 | 36.36 | 3.36 |
18 | 19 | 2.257371 | CCTTCGCGTCGACAAGGA | 59.743 | 61.111 | 22.52 | 10.90 | 36.36 | 3.36 |
19 | 20 | 2.809601 | CCCTTCGCGTCGACAAGG | 60.810 | 66.667 | 20.84 | 20.84 | 34.89 | 3.61 |
20 | 21 | 2.809601 | CCCCTTCGCGTCGACAAG | 60.810 | 66.667 | 17.16 | 11.45 | 34.89 | 3.16 |
40 | 41 | 4.238062 | TTTGGCTTGGGGGCTGCT | 62.238 | 61.111 | 0.00 | 0.00 | 41.48 | 4.24 |
41 | 42 | 3.698820 | CTTTGGCTTGGGGGCTGC | 61.699 | 66.667 | 0.00 | 0.00 | 41.48 | 5.25 |
42 | 43 | 2.203684 | ACTTTGGCTTGGGGGCTG | 60.204 | 61.111 | 0.00 | 0.00 | 41.48 | 4.85 |
43 | 44 | 2.118294 | GACTTTGGCTTGGGGGCT | 59.882 | 61.111 | 0.00 | 0.00 | 41.48 | 5.19 |
44 | 45 | 2.118294 | AGACTTTGGCTTGGGGGC | 59.882 | 61.111 | 0.00 | 0.00 | 41.27 | 5.80 |
45 | 46 | 0.610232 | CTCAGACTTTGGCTTGGGGG | 60.610 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
46 | 47 | 0.401738 | TCTCAGACTTTGGCTTGGGG | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
47 | 48 | 2.290514 | TGATCTCAGACTTTGGCTTGGG | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
48 | 49 | 3.008330 | CTGATCTCAGACTTTGGCTTGG | 58.992 | 50.000 | 0.72 | 0.00 | 46.59 | 3.61 |
60 | 61 | 3.067320 | TGCGGTATGAGTTCTGATCTCAG | 59.933 | 47.826 | 19.74 | 10.11 | 43.66 | 3.35 |
61 | 62 | 3.023832 | TGCGGTATGAGTTCTGATCTCA | 58.976 | 45.455 | 17.97 | 17.97 | 44.37 | 3.27 |
62 | 63 | 3.067461 | ACTGCGGTATGAGTTCTGATCTC | 59.933 | 47.826 | 0.00 | 8.48 | 0.00 | 2.75 |
63 | 64 | 3.027412 | ACTGCGGTATGAGTTCTGATCT | 58.973 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
64 | 65 | 3.444703 | ACTGCGGTATGAGTTCTGATC | 57.555 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
65 | 66 | 3.055819 | ACAACTGCGGTATGAGTTCTGAT | 60.056 | 43.478 | 0.00 | 0.00 | 29.73 | 2.90 |
66 | 67 | 2.299013 | ACAACTGCGGTATGAGTTCTGA | 59.701 | 45.455 | 0.00 | 0.00 | 29.73 | 3.27 |
67 | 68 | 2.413112 | CACAACTGCGGTATGAGTTCTG | 59.587 | 50.000 | 0.00 | 0.00 | 29.73 | 3.02 |
68 | 69 | 2.612972 | CCACAACTGCGGTATGAGTTCT | 60.613 | 50.000 | 10.70 | 0.00 | 29.73 | 3.01 |
69 | 70 | 1.732259 | CCACAACTGCGGTATGAGTTC | 59.268 | 52.381 | 10.70 | 0.00 | 29.73 | 3.01 |
70 | 71 | 1.808411 | CCACAACTGCGGTATGAGTT | 58.192 | 50.000 | 10.70 | 0.00 | 32.48 | 3.01 |
71 | 72 | 0.673644 | GCCACAACTGCGGTATGAGT | 60.674 | 55.000 | 10.70 | 0.10 | 0.00 | 3.41 |
72 | 73 | 0.391661 | AGCCACAACTGCGGTATGAG | 60.392 | 55.000 | 10.70 | 5.25 | 0.00 | 2.90 |
73 | 74 | 0.036164 | AAGCCACAACTGCGGTATGA | 59.964 | 50.000 | 10.70 | 0.00 | 0.00 | 2.15 |
74 | 75 | 0.168788 | CAAGCCACAACTGCGGTATG | 59.831 | 55.000 | 0.00 | 0.05 | 0.00 | 2.39 |
75 | 76 | 0.036164 | TCAAGCCACAACTGCGGTAT | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
76 | 77 | 0.179043 | TTCAAGCCACAACTGCGGTA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
77 | 78 | 1.447317 | CTTCAAGCCACAACTGCGGT | 61.447 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
78 | 79 | 1.283793 | CTTCAAGCCACAACTGCGG | 59.716 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
79 | 80 | 1.283793 | CCTTCAAGCCACAACTGCG | 59.716 | 57.895 | 0.00 | 0.00 | 0.00 | 5.18 |
80 | 81 | 1.006922 | GCCTTCAAGCCACAACTGC | 60.007 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
89 | 90 | 3.285523 | TTGCATGCGGCCTTCAAGC | 62.286 | 57.895 | 14.09 | 13.08 | 43.89 | 4.01 |
90 | 91 | 1.153901 | CTTGCATGCGGCCTTCAAG | 60.154 | 57.895 | 14.09 | 5.24 | 43.89 | 3.02 |
91 | 92 | 1.462731 | AACTTGCATGCGGCCTTCAA | 61.463 | 50.000 | 14.09 | 0.00 | 43.89 | 2.69 |
92 | 93 | 1.865788 | GAACTTGCATGCGGCCTTCA | 61.866 | 55.000 | 14.09 | 0.00 | 43.89 | 3.02 |
93 | 94 | 1.153958 | GAACTTGCATGCGGCCTTC | 60.154 | 57.895 | 14.09 | 7.27 | 43.89 | 3.46 |
94 | 95 | 1.181098 | AAGAACTTGCATGCGGCCTT | 61.181 | 50.000 | 14.09 | 11.78 | 43.89 | 4.35 |
95 | 96 | 1.589716 | GAAGAACTTGCATGCGGCCT | 61.590 | 55.000 | 14.09 | 6.67 | 43.89 | 5.19 |
96 | 97 | 1.153958 | GAAGAACTTGCATGCGGCC | 60.154 | 57.895 | 14.09 | 0.00 | 43.89 | 6.13 |
97 | 98 | 0.039256 | TTGAAGAACTTGCATGCGGC | 60.039 | 50.000 | 14.09 | 0.00 | 45.13 | 6.53 |
98 | 99 | 2.642139 | ATTGAAGAACTTGCATGCGG | 57.358 | 45.000 | 14.09 | 10.98 | 0.00 | 5.69 |
99 | 100 | 7.188834 | TCTAAATATTGAAGAACTTGCATGCG | 58.811 | 34.615 | 14.09 | 1.59 | 0.00 | 4.73 |
100 | 101 | 8.400947 | TCTCTAAATATTGAAGAACTTGCATGC | 58.599 | 33.333 | 11.82 | 11.82 | 0.00 | 4.06 |
101 | 102 | 9.932699 | CTCTCTAAATATTGAAGAACTTGCATG | 57.067 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
102 | 103 | 9.678260 | ACTCTCTAAATATTGAAGAACTTGCAT | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
121 | 122 | 9.043079 | CGATCTTGTACTAACACATACTCTCTA | 57.957 | 37.037 | 0.00 | 0.00 | 34.61 | 2.43 |
122 | 123 | 7.467539 | GCGATCTTGTACTAACACATACTCTCT | 60.468 | 40.741 | 0.00 | 0.00 | 34.61 | 3.10 |
123 | 124 | 6.633634 | GCGATCTTGTACTAACACATACTCTC | 59.366 | 42.308 | 0.00 | 0.00 | 34.61 | 3.20 |
124 | 125 | 6.496571 | GCGATCTTGTACTAACACATACTCT | 58.503 | 40.000 | 0.00 | 0.00 | 34.61 | 3.24 |
125 | 126 | 5.395778 | CGCGATCTTGTACTAACACATACTC | 59.604 | 44.000 | 0.00 | 0.00 | 34.61 | 2.59 |
126 | 127 | 5.271625 | CGCGATCTTGTACTAACACATACT | 58.728 | 41.667 | 0.00 | 0.00 | 34.61 | 2.12 |
127 | 128 | 4.085721 | GCGCGATCTTGTACTAACACATAC | 60.086 | 45.833 | 12.10 | 0.00 | 34.61 | 2.39 |
128 | 129 | 4.039703 | GCGCGATCTTGTACTAACACATA | 58.960 | 43.478 | 12.10 | 0.00 | 34.61 | 2.29 |
129 | 130 | 2.858344 | GCGCGATCTTGTACTAACACAT | 59.142 | 45.455 | 12.10 | 0.00 | 34.61 | 3.21 |
130 | 131 | 2.094906 | AGCGCGATCTTGTACTAACACA | 60.095 | 45.455 | 12.10 | 0.00 | 34.61 | 3.72 |
131 | 132 | 2.527100 | AGCGCGATCTTGTACTAACAC | 58.473 | 47.619 | 12.10 | 0.00 | 34.61 | 3.32 |
132 | 133 | 2.933495 | AGCGCGATCTTGTACTAACA | 57.067 | 45.000 | 12.10 | 0.00 | 0.00 | 2.41 |
133 | 134 | 4.534168 | TGATAGCGCGATCTTGTACTAAC | 58.466 | 43.478 | 27.21 | 0.00 | 0.00 | 2.34 |
134 | 135 | 4.823790 | TGATAGCGCGATCTTGTACTAA | 57.176 | 40.909 | 27.21 | 5.55 | 0.00 | 2.24 |
135 | 136 | 4.275196 | AGTTGATAGCGCGATCTTGTACTA | 59.725 | 41.667 | 27.21 | 6.24 | 0.00 | 1.82 |
136 | 137 | 3.066900 | AGTTGATAGCGCGATCTTGTACT | 59.933 | 43.478 | 27.21 | 20.78 | 0.00 | 2.73 |
137 | 138 | 3.372954 | AGTTGATAGCGCGATCTTGTAC | 58.627 | 45.455 | 27.21 | 19.30 | 0.00 | 2.90 |
138 | 139 | 3.710326 | AGTTGATAGCGCGATCTTGTA | 57.290 | 42.857 | 27.21 | 7.97 | 0.00 | 2.41 |
139 | 140 | 2.586258 | AGTTGATAGCGCGATCTTGT | 57.414 | 45.000 | 27.21 | 11.53 | 0.00 | 3.16 |
140 | 141 | 5.582439 | AATAAGTTGATAGCGCGATCTTG | 57.418 | 39.130 | 27.21 | 0.00 | 0.00 | 3.02 |
141 | 142 | 5.753438 | TGAAATAAGTTGATAGCGCGATCTT | 59.247 | 36.000 | 27.21 | 17.36 | 0.00 | 2.40 |
142 | 143 | 5.289595 | TGAAATAAGTTGATAGCGCGATCT | 58.710 | 37.500 | 27.21 | 12.53 | 0.00 | 2.75 |
143 | 144 | 5.576337 | TGAAATAAGTTGATAGCGCGATC | 57.424 | 39.130 | 21.90 | 21.90 | 0.00 | 3.69 |
144 | 145 | 5.928839 | AGATGAAATAAGTTGATAGCGCGAT | 59.071 | 36.000 | 12.10 | 5.99 | 0.00 | 4.58 |
145 | 146 | 5.289595 | AGATGAAATAAGTTGATAGCGCGA | 58.710 | 37.500 | 12.10 | 0.00 | 0.00 | 5.87 |
146 | 147 | 5.582439 | AGATGAAATAAGTTGATAGCGCG | 57.418 | 39.130 | 0.00 | 0.00 | 0.00 | 6.86 |
147 | 148 | 7.634522 | AGAAAGATGAAATAAGTTGATAGCGC | 58.365 | 34.615 | 0.00 | 0.00 | 0.00 | 5.92 |
148 | 149 | 8.000991 | CGAGAAAGATGAAATAAGTTGATAGCG | 58.999 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
149 | 150 | 9.035607 | TCGAGAAAGATGAAATAAGTTGATAGC | 57.964 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
164 | 165 | 7.776933 | TTTGTCCTAATCATCGAGAAAGATG | 57.223 | 36.000 | 0.00 | 0.89 | 46.90 | 2.90 |
165 | 166 | 8.970859 | ATTTTGTCCTAATCATCGAGAAAGAT | 57.029 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
166 | 167 | 8.668353 | CAATTTTGTCCTAATCATCGAGAAAGA | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
167 | 168 | 8.454106 | ACAATTTTGTCCTAATCATCGAGAAAG | 58.546 | 33.333 | 0.00 | 0.00 | 36.50 | 2.62 |
168 | 169 | 8.335532 | ACAATTTTGTCCTAATCATCGAGAAA | 57.664 | 30.769 | 0.00 | 0.00 | 36.50 | 2.52 |
169 | 170 | 7.921786 | ACAATTTTGTCCTAATCATCGAGAA | 57.078 | 32.000 | 0.00 | 0.00 | 36.50 | 2.87 |
170 | 171 | 9.261180 | GATACAATTTTGTCCTAATCATCGAGA | 57.739 | 33.333 | 0.00 | 0.00 | 42.35 | 4.04 |
171 | 172 | 8.499162 | GGATACAATTTTGTCCTAATCATCGAG | 58.501 | 37.037 | 0.00 | 0.00 | 42.35 | 4.04 |
172 | 173 | 7.444183 | GGGATACAATTTTGTCCTAATCATCGA | 59.556 | 37.037 | 7.25 | 0.00 | 42.35 | 3.59 |
173 | 174 | 7.445402 | AGGGATACAATTTTGTCCTAATCATCG | 59.555 | 37.037 | 7.25 | 0.00 | 42.35 | 3.84 |
174 | 175 | 8.697507 | AGGGATACAATTTTGTCCTAATCATC | 57.302 | 34.615 | 7.25 | 0.00 | 42.35 | 2.92 |
176 | 177 | 9.627123 | CTAAGGGATACAATTTTGTCCTAATCA | 57.373 | 33.333 | 7.25 | 0.00 | 42.35 | 2.57 |
177 | 178 | 9.067986 | CCTAAGGGATACAATTTTGTCCTAATC | 57.932 | 37.037 | 7.25 | 0.00 | 37.42 | 1.75 |
178 | 179 | 8.787818 | TCCTAAGGGATACAATTTTGTCCTAAT | 58.212 | 33.333 | 7.25 | 0.00 | 38.43 | 1.73 |
179 | 180 | 8.165267 | TCCTAAGGGATACAATTTTGTCCTAA | 57.835 | 34.615 | 7.25 | 0.00 | 38.43 | 2.69 |
180 | 181 | 7.758820 | TCCTAAGGGATACAATTTTGTCCTA | 57.241 | 36.000 | 7.25 | 0.00 | 38.43 | 2.94 |
181 | 182 | 6.652205 | TCCTAAGGGATACAATTTTGTCCT | 57.348 | 37.500 | 7.25 | 0.00 | 38.43 | 3.85 |
182 | 183 | 6.096423 | GGTTCCTAAGGGATACAATTTTGTCC | 59.904 | 42.308 | 0.00 | 0.00 | 41.87 | 4.02 |
183 | 184 | 6.183360 | CGGTTCCTAAGGGATACAATTTTGTC | 60.183 | 42.308 | 0.00 | 0.00 | 41.87 | 3.18 |
184 | 185 | 5.650703 | CGGTTCCTAAGGGATACAATTTTGT | 59.349 | 40.000 | 1.08 | 1.08 | 41.87 | 2.83 |
185 | 186 | 5.650703 | ACGGTTCCTAAGGGATACAATTTTG | 59.349 | 40.000 | 0.00 | 0.00 | 41.87 | 2.44 |
186 | 187 | 5.823312 | ACGGTTCCTAAGGGATACAATTTT | 58.177 | 37.500 | 0.00 | 0.00 | 41.87 | 1.82 |
187 | 188 | 5.446260 | ACGGTTCCTAAGGGATACAATTT | 57.554 | 39.130 | 0.00 | 0.00 | 41.87 | 1.82 |
188 | 189 | 5.426185 | TGTACGGTTCCTAAGGGATACAATT | 59.574 | 40.000 | 0.00 | 0.00 | 41.87 | 2.32 |
189 | 190 | 4.964262 | TGTACGGTTCCTAAGGGATACAAT | 59.036 | 41.667 | 0.00 | 0.00 | 41.87 | 2.71 |
190 | 191 | 4.352009 | TGTACGGTTCCTAAGGGATACAA | 58.648 | 43.478 | 0.00 | 0.00 | 41.87 | 2.41 |
191 | 192 | 3.979911 | TGTACGGTTCCTAAGGGATACA | 58.020 | 45.455 | 0.00 | 0.00 | 41.87 | 2.29 |
192 | 193 | 4.798593 | GCATGTACGGTTCCTAAGGGATAC | 60.799 | 50.000 | 0.00 | 0.00 | 41.87 | 2.24 |
193 | 194 | 3.322828 | GCATGTACGGTTCCTAAGGGATA | 59.677 | 47.826 | 0.00 | 0.00 | 41.87 | 2.59 |
194 | 195 | 2.104281 | GCATGTACGGTTCCTAAGGGAT | 59.896 | 50.000 | 0.00 | 0.00 | 41.87 | 3.85 |
195 | 196 | 1.483415 | GCATGTACGGTTCCTAAGGGA | 59.517 | 52.381 | 0.00 | 0.00 | 40.36 | 4.20 |
196 | 197 | 1.208535 | TGCATGTACGGTTCCTAAGGG | 59.791 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
197 | 198 | 2.277084 | GTGCATGTACGGTTCCTAAGG | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
198 | 199 | 2.093658 | AGGTGCATGTACGGTTCCTAAG | 60.094 | 50.000 | 7.89 | 0.00 | 0.00 | 2.18 |
199 | 200 | 1.903860 | AGGTGCATGTACGGTTCCTAA | 59.096 | 47.619 | 7.89 | 0.00 | 0.00 | 2.69 |
200 | 201 | 1.563924 | AGGTGCATGTACGGTTCCTA | 58.436 | 50.000 | 7.89 | 0.00 | 0.00 | 2.94 |
201 | 202 | 0.690762 | AAGGTGCATGTACGGTTCCT | 59.309 | 50.000 | 7.89 | 0.00 | 0.00 | 3.36 |
202 | 203 | 1.199097 | CAAAGGTGCATGTACGGTTCC | 59.801 | 52.381 | 7.89 | 0.00 | 0.00 | 3.62 |
203 | 204 | 1.877443 | ACAAAGGTGCATGTACGGTTC | 59.123 | 47.619 | 7.89 | 0.00 | 0.00 | 3.62 |
204 | 205 | 1.975660 | ACAAAGGTGCATGTACGGTT | 58.024 | 45.000 | 7.89 | 1.32 | 0.00 | 4.44 |
205 | 206 | 1.975660 | AACAAAGGTGCATGTACGGT | 58.024 | 45.000 | 7.89 | 1.11 | 0.00 | 4.83 |
206 | 207 | 2.606795 | CCAAACAAAGGTGCATGTACGG | 60.607 | 50.000 | 7.89 | 0.00 | 0.00 | 4.02 |
207 | 208 | 2.292016 | TCCAAACAAAGGTGCATGTACG | 59.708 | 45.455 | 7.89 | 0.00 | 0.00 | 3.67 |
208 | 209 | 4.236935 | CATCCAAACAAAGGTGCATGTAC | 58.763 | 43.478 | 5.22 | 5.22 | 0.00 | 2.90 |
209 | 210 | 3.305950 | GCATCCAAACAAAGGTGCATGTA | 60.306 | 43.478 | 0.00 | 0.00 | 35.03 | 2.29 |
210 | 211 | 2.548493 | GCATCCAAACAAAGGTGCATGT | 60.548 | 45.455 | 0.00 | 0.00 | 35.03 | 3.21 |
211 | 212 | 2.070783 | GCATCCAAACAAAGGTGCATG | 58.929 | 47.619 | 0.00 | 0.00 | 35.03 | 4.06 |
212 | 213 | 1.002315 | GGCATCCAAACAAAGGTGCAT | 59.998 | 47.619 | 0.00 | 0.00 | 35.94 | 3.96 |
213 | 214 | 0.392336 | GGCATCCAAACAAAGGTGCA | 59.608 | 50.000 | 0.00 | 0.00 | 35.94 | 4.57 |
214 | 215 | 0.667184 | CGGCATCCAAACAAAGGTGC | 60.667 | 55.000 | 0.00 | 0.00 | 34.54 | 5.01 |
215 | 216 | 0.958091 | TCGGCATCCAAACAAAGGTG | 59.042 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
216 | 217 | 1.818674 | GATCGGCATCCAAACAAAGGT | 59.181 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
217 | 218 | 2.094675 | AGATCGGCATCCAAACAAAGG | 58.905 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
218 | 219 | 4.963276 | TTAGATCGGCATCCAAACAAAG | 57.037 | 40.909 | 0.00 | 0.00 | 0.00 | 2.77 |
219 | 220 | 7.068103 | ACAATATTAGATCGGCATCCAAACAAA | 59.932 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
220 | 221 | 6.545666 | ACAATATTAGATCGGCATCCAAACAA | 59.454 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
221 | 222 | 6.061441 | ACAATATTAGATCGGCATCCAAACA | 58.939 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
222 | 223 | 6.560253 | ACAATATTAGATCGGCATCCAAAC | 57.440 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
223 | 224 | 7.717436 | TGTAACAATATTAGATCGGCATCCAAA | 59.283 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
224 | 225 | 7.220740 | TGTAACAATATTAGATCGGCATCCAA | 58.779 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
225 | 226 | 6.764379 | TGTAACAATATTAGATCGGCATCCA | 58.236 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
226 | 227 | 7.667043 | TTGTAACAATATTAGATCGGCATCC | 57.333 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
228 | 229 | 8.869897 | CGTATTGTAACAATATTAGATCGGCAT | 58.130 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
229 | 230 | 8.083462 | TCGTATTGTAACAATATTAGATCGGCA | 58.917 | 33.333 | 0.00 | 0.00 | 0.00 | 5.69 |
230 | 231 | 8.456904 | TCGTATTGTAACAATATTAGATCGGC | 57.543 | 34.615 | 0.00 | 0.00 | 0.00 | 5.54 |
242 | 243 | 8.231837 | GCCTTCAAGTATTTCGTATTGTAACAA | 58.768 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
243 | 244 | 7.148373 | GGCCTTCAAGTATTTCGTATTGTAACA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
244 | 245 | 7.148373 | TGGCCTTCAAGTATTTCGTATTGTAAC | 60.148 | 37.037 | 3.32 | 0.00 | 0.00 | 2.50 |
245 | 246 | 6.879993 | TGGCCTTCAAGTATTTCGTATTGTAA | 59.120 | 34.615 | 3.32 | 0.00 | 0.00 | 2.41 |
246 | 247 | 6.314400 | GTGGCCTTCAAGTATTTCGTATTGTA | 59.686 | 38.462 | 3.32 | 0.00 | 0.00 | 2.41 |
247 | 248 | 5.123344 | GTGGCCTTCAAGTATTTCGTATTGT | 59.877 | 40.000 | 3.32 | 0.00 | 0.00 | 2.71 |
248 | 249 | 5.123186 | TGTGGCCTTCAAGTATTTCGTATTG | 59.877 | 40.000 | 3.32 | 0.00 | 0.00 | 1.90 |
249 | 250 | 5.123344 | GTGTGGCCTTCAAGTATTTCGTATT | 59.877 | 40.000 | 3.32 | 0.00 | 0.00 | 1.89 |
250 | 251 | 4.634443 | GTGTGGCCTTCAAGTATTTCGTAT | 59.366 | 41.667 | 3.32 | 0.00 | 0.00 | 3.06 |
251 | 252 | 3.998341 | GTGTGGCCTTCAAGTATTTCGTA | 59.002 | 43.478 | 3.32 | 0.00 | 0.00 | 3.43 |
252 | 253 | 2.812011 | GTGTGGCCTTCAAGTATTTCGT | 59.188 | 45.455 | 3.32 | 0.00 | 0.00 | 3.85 |
253 | 254 | 2.159707 | CGTGTGGCCTTCAAGTATTTCG | 60.160 | 50.000 | 3.32 | 0.00 | 0.00 | 3.46 |
254 | 255 | 2.414161 | GCGTGTGGCCTTCAAGTATTTC | 60.414 | 50.000 | 3.32 | 0.00 | 34.80 | 2.17 |
255 | 256 | 1.539827 | GCGTGTGGCCTTCAAGTATTT | 59.460 | 47.619 | 3.32 | 0.00 | 34.80 | 1.40 |
256 | 257 | 1.165270 | GCGTGTGGCCTTCAAGTATT | 58.835 | 50.000 | 3.32 | 0.00 | 34.80 | 1.89 |
257 | 258 | 0.036164 | TGCGTGTGGCCTTCAAGTAT | 59.964 | 50.000 | 3.32 | 0.00 | 42.61 | 2.12 |
258 | 259 | 0.179043 | TTGCGTGTGGCCTTCAAGTA | 60.179 | 50.000 | 3.32 | 2.68 | 42.61 | 2.24 |
259 | 260 | 0.823356 | ATTGCGTGTGGCCTTCAAGT | 60.823 | 50.000 | 3.32 | 0.00 | 42.61 | 3.16 |
260 | 261 | 0.314935 | AATTGCGTGTGGCCTTCAAG | 59.685 | 50.000 | 3.32 | 7.18 | 42.61 | 3.02 |
261 | 262 | 0.031857 | CAATTGCGTGTGGCCTTCAA | 59.968 | 50.000 | 3.32 | 1.15 | 42.61 | 2.69 |
262 | 263 | 0.821301 | TCAATTGCGTGTGGCCTTCA | 60.821 | 50.000 | 3.32 | 0.00 | 42.61 | 3.02 |
263 | 264 | 0.387239 | GTCAATTGCGTGTGGCCTTC | 60.387 | 55.000 | 3.32 | 0.00 | 42.61 | 3.46 |
264 | 265 | 0.823356 | AGTCAATTGCGTGTGGCCTT | 60.823 | 50.000 | 3.32 | 0.00 | 42.61 | 4.35 |
265 | 266 | 1.228245 | AGTCAATTGCGTGTGGCCT | 60.228 | 52.632 | 3.32 | 0.00 | 42.61 | 5.19 |
266 | 267 | 1.210155 | GAGTCAATTGCGTGTGGCC | 59.790 | 57.895 | 0.00 | 0.00 | 42.61 | 5.36 |
267 | 268 | 0.385974 | GTGAGTCAATTGCGTGTGGC | 60.386 | 55.000 | 0.00 | 0.00 | 43.96 | 5.01 |
268 | 269 | 0.238289 | GGTGAGTCAATTGCGTGTGG | 59.762 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
269 | 270 | 1.229428 | AGGTGAGTCAATTGCGTGTG | 58.771 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
270 | 271 | 2.224185 | TGTAGGTGAGTCAATTGCGTGT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
271 | 272 | 2.412870 | TGTAGGTGAGTCAATTGCGTG | 58.587 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
272 | 273 | 2.831685 | TGTAGGTGAGTCAATTGCGT | 57.168 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
273 | 274 | 4.685169 | AAATGTAGGTGAGTCAATTGCG | 57.315 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
274 | 275 | 6.473455 | GCATAAAATGTAGGTGAGTCAATTGC | 59.527 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
275 | 276 | 7.765307 | AGCATAAAATGTAGGTGAGTCAATTG | 58.235 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
276 | 277 | 7.067494 | GGAGCATAAAATGTAGGTGAGTCAATT | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
277 | 278 | 6.543831 | GGAGCATAAAATGTAGGTGAGTCAAT | 59.456 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
278 | 279 | 5.880332 | GGAGCATAAAATGTAGGTGAGTCAA | 59.120 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
279 | 280 | 5.428253 | GGAGCATAAAATGTAGGTGAGTCA | 58.572 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
280 | 281 | 4.816925 | GGGAGCATAAAATGTAGGTGAGTC | 59.183 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
281 | 282 | 4.227300 | TGGGAGCATAAAATGTAGGTGAGT | 59.773 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
282 | 283 | 4.576463 | GTGGGAGCATAAAATGTAGGTGAG | 59.424 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
283 | 284 | 4.523083 | GTGGGAGCATAAAATGTAGGTGA | 58.477 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
284 | 285 | 3.632145 | GGTGGGAGCATAAAATGTAGGTG | 59.368 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
285 | 286 | 3.372675 | GGGTGGGAGCATAAAATGTAGGT | 60.373 | 47.826 | 0.00 | 0.00 | 0.00 | 3.08 |
286 | 287 | 3.117512 | AGGGTGGGAGCATAAAATGTAGG | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
287 | 288 | 4.170468 | AGGGTGGGAGCATAAAATGTAG | 57.830 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
288 | 289 | 4.601406 | AAGGGTGGGAGCATAAAATGTA | 57.399 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
289 | 290 | 3.473113 | AAGGGTGGGAGCATAAAATGT | 57.527 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
290 | 291 | 4.026052 | AGAAAGGGTGGGAGCATAAAATG | 58.974 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
291 | 292 | 4.337264 | AGAAAGGGTGGGAGCATAAAAT | 57.663 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
292 | 293 | 3.825908 | AGAAAGGGTGGGAGCATAAAA | 57.174 | 42.857 | 0.00 | 0.00 | 0.00 | 1.52 |
293 | 294 | 3.825908 | AAGAAAGGGTGGGAGCATAAA | 57.174 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
294 | 295 | 3.075283 | TCAAAGAAAGGGTGGGAGCATAA | 59.925 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
295 | 296 | 2.647299 | TCAAAGAAAGGGTGGGAGCATA | 59.353 | 45.455 | 0.00 | 0.00 | 0.00 | 3.14 |
296 | 297 | 1.428912 | TCAAAGAAAGGGTGGGAGCAT | 59.571 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
297 | 298 | 0.850100 | TCAAAGAAAGGGTGGGAGCA | 59.150 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
298 | 299 | 1.613925 | GTTCAAAGAAAGGGTGGGAGC | 59.386 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
299 | 300 | 2.158460 | AGGTTCAAAGAAAGGGTGGGAG | 60.158 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
300 | 301 | 1.856920 | AGGTTCAAAGAAAGGGTGGGA | 59.143 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
369 | 370 | 4.238514 | CTCTCCCTTGTTCGTTCTTACTG | 58.761 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
377 | 378 | 2.544844 | TATCCCTCTCCCTTGTTCGT | 57.455 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
415 | 416 | 6.402222 | ACTACTAGCAATGACTTCCTCTTTG | 58.598 | 40.000 | 0.00 | 0.00 | 37.19 | 2.77 |
578 | 579 | 1.906824 | TGCGGTTCGGAGAGGACTT | 60.907 | 57.895 | 0.00 | 0.00 | 38.43 | 3.01 |
703 | 705 | 3.372206 | AGAATCATCTTGAAAACGCTCCG | 59.628 | 43.478 | 0.00 | 0.00 | 29.15 | 4.63 |
1659 | 1668 | 0.617820 | ATACTGAGGTGCTCCCCGTT | 60.618 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1984 | 1993 | 2.909965 | GCCGCTTTGGGTTGTGGA | 60.910 | 61.111 | 0.00 | 0.00 | 38.63 | 4.02 |
2073 | 2082 | 3.964688 | TCCTATTTCGGCTATGACCTTCA | 59.035 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2111 | 2120 | 7.103641 | GTCAAATATATAGCGGATTTGGGAGA | 58.896 | 38.462 | 7.65 | 0.00 | 39.79 | 3.71 |
2113 | 2122 | 6.653320 | GTGTCAAATATATAGCGGATTTGGGA | 59.347 | 38.462 | 7.65 | 0.00 | 39.79 | 4.37 |
2238 | 2247 | 9.095065 | GTTATATTCGTACTGGTTTCTCATGTT | 57.905 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.