Multiple sequence alignment - TraesCS4D01G134700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G134700 chr4D 100.000 2932 0 0 1 2932 121441678 121438747 0.000000e+00 5415.0
1 TraesCS4D01G134700 chr4B 95.004 2302 63 22 666 2932 184241848 184239564 0.000000e+00 3567.0
2 TraesCS4D01G134700 chr4B 85.441 261 32 6 410 665 184242607 184242348 1.730000e-67 267.0
3 TraesCS4D01G134700 chr4B 96.000 125 5 0 1 125 184242753 184242629 1.380000e-48 204.0
4 TraesCS4D01G134700 chr4A 95.494 2197 71 13 742 2932 453613038 453610864 0.000000e+00 3483.0
5 TraesCS4D01G134700 chr2A 75.686 547 112 10 1201 1735 612306392 612305855 1.350000e-63 254.0
6 TraesCS4D01G134700 chr2B 75.184 544 117 13 1201 1735 549539572 549539038 1.050000e-59 241.0
7 TraesCS4D01G134700 chr3A 76.823 384 81 7 1336 1715 688065379 688065000 2.960000e-50 209.0
8 TraesCS4D01G134700 chr3B 77.104 297 60 7 1420 1712 730432591 730432299 6.500000e-37 165.0
9 TraesCS4D01G134700 chr3B 77.917 240 32 11 9 247 393274325 393274544 2.370000e-26 130.0
10 TraesCS4D01G134700 chr3B 83.951 81 13 0 1420 1500 730377185 730377105 8.710000e-11 78.7
11 TraesCS4D01G134700 chr3B 83.951 81 13 0 1420 1500 730413201 730413121 8.710000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G134700 chr4D 121438747 121441678 2931 True 5415 5415 100.000000 1 2932 1 chr4D.!!$R1 2931
1 TraesCS4D01G134700 chr4B 184239564 184242753 3189 True 1346 3567 92.148333 1 2932 3 chr4B.!!$R1 2931
2 TraesCS4D01G134700 chr4A 453610864 453613038 2174 True 3483 3483 95.494000 742 2932 1 chr4A.!!$R1 2190
3 TraesCS4D01G134700 chr2A 612305855 612306392 537 True 254 254 75.686000 1201 1735 1 chr2A.!!$R1 534
4 TraesCS4D01G134700 chr2B 549539038 549539572 534 True 241 241 75.184000 1201 1735 1 chr2B.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.035056 GTGTTGGTGGAGGGGAGATG 60.035 60.0 0.0 0.0 0.0 2.90 F
389 390 0.035458 GGGAGAGTGAGTGTTGGTGG 59.965 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1198 1736 0.531532 CTCCACGATGGCAAGCCTAG 60.532 60.0 12.96 6.11 37.47 3.02 R
2333 2884 0.664767 GAGGAGATACACGCGGCATC 60.665 60.0 12.47 9.89 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.135972 CAGGCTTCAACACCGAAATCG 60.136 52.381 0.00 0.00 39.44 3.34
57 58 2.184533 CCCCAAATCAACCCCTTAACC 58.815 52.381 0.00 0.00 0.00 2.85
109 110 5.741388 ACCAAATCATGCTCTTAATCGAC 57.259 39.130 0.00 0.00 0.00 4.20
125 126 1.644786 CGACACCCCAAATCGAAGCC 61.645 60.000 0.00 0.00 38.10 4.35
127 128 0.112412 ACACCCCAAATCGAAGCCTT 59.888 50.000 0.00 0.00 0.00 4.35
128 129 1.353022 ACACCCCAAATCGAAGCCTTA 59.647 47.619 0.00 0.00 0.00 2.69
129 130 2.224917 ACACCCCAAATCGAAGCCTTAA 60.225 45.455 0.00 0.00 0.00 1.85
130 131 3.023832 CACCCCAAATCGAAGCCTTAAT 58.976 45.455 0.00 0.00 0.00 1.40
139 140 3.857052 TCGAAGCCTTAATCGAATGTGT 58.143 40.909 0.00 0.00 44.32 3.72
140 141 3.616821 TCGAAGCCTTAATCGAATGTGTG 59.383 43.478 0.00 0.00 44.32 3.82
141 142 3.616821 CGAAGCCTTAATCGAATGTGTGA 59.383 43.478 0.00 0.00 41.43 3.58
142 143 4.092821 CGAAGCCTTAATCGAATGTGTGAA 59.907 41.667 0.00 0.00 41.43 3.18
143 144 5.551760 AAGCCTTAATCGAATGTGTGAAG 57.448 39.130 0.00 0.00 0.00 3.02
145 146 5.003804 AGCCTTAATCGAATGTGTGAAGTT 58.996 37.500 0.00 0.00 0.00 2.66
146 147 6.170506 AGCCTTAATCGAATGTGTGAAGTTA 58.829 36.000 0.00 0.00 0.00 2.24
147 148 6.653320 AGCCTTAATCGAATGTGTGAAGTTAA 59.347 34.615 0.00 0.00 0.00 2.01
148 149 7.174253 AGCCTTAATCGAATGTGTGAAGTTAAA 59.826 33.333 0.00 0.00 0.00 1.52
149 150 7.270579 GCCTTAATCGAATGTGTGAAGTTAAAC 59.729 37.037 0.00 0.00 0.00 2.01
150 151 7.749126 CCTTAATCGAATGTGTGAAGTTAAACC 59.251 37.037 0.00 0.00 0.00 3.27
151 152 5.622770 ATCGAATGTGTGAAGTTAAACCC 57.377 39.130 0.00 0.00 0.00 4.11
152 153 4.452825 TCGAATGTGTGAAGTTAAACCCA 58.547 39.130 0.00 0.00 0.00 4.51
153 154 5.067273 TCGAATGTGTGAAGTTAAACCCAT 58.933 37.500 0.00 0.00 0.00 4.00
154 155 5.049060 TCGAATGTGTGAAGTTAAACCCATG 60.049 40.000 0.00 0.00 0.00 3.66
155 156 4.519540 ATGTGTGAAGTTAAACCCATGC 57.480 40.909 0.00 0.00 0.00 4.06
156 157 2.625790 TGTGTGAAGTTAAACCCATGCC 59.374 45.455 0.00 0.00 0.00 4.40
157 158 2.029380 GTGTGAAGTTAAACCCATGCCC 60.029 50.000 0.00 0.00 0.00 5.36
158 159 1.548719 GTGAAGTTAAACCCATGCCCC 59.451 52.381 0.00 0.00 0.00 5.80
159 160 1.431243 TGAAGTTAAACCCATGCCCCT 59.569 47.619 0.00 0.00 0.00 4.79
160 161 2.650322 TGAAGTTAAACCCATGCCCCTA 59.350 45.455 0.00 0.00 0.00 3.53
161 162 3.076182 TGAAGTTAAACCCATGCCCCTAA 59.924 43.478 0.00 0.00 0.00 2.69
162 163 3.837399 AGTTAAACCCATGCCCCTAAA 57.163 42.857 0.00 0.00 0.00 1.85
163 164 4.346478 AGTTAAACCCATGCCCCTAAAT 57.654 40.909 0.00 0.00 0.00 1.40
164 165 5.475398 AGTTAAACCCATGCCCCTAAATA 57.525 39.130 0.00 0.00 0.00 1.40
165 166 5.205821 AGTTAAACCCATGCCCCTAAATAC 58.794 41.667 0.00 0.00 0.00 1.89
166 167 3.767309 AAACCCATGCCCCTAAATACA 57.233 42.857 0.00 0.00 0.00 2.29
167 168 2.748209 ACCCATGCCCCTAAATACAC 57.252 50.000 0.00 0.00 0.00 2.90
168 169 1.216930 ACCCATGCCCCTAAATACACC 59.783 52.381 0.00 0.00 0.00 4.16
169 170 1.480498 CCCATGCCCCTAAATACACCC 60.480 57.143 0.00 0.00 0.00 4.61
170 171 1.480498 CCATGCCCCTAAATACACCCC 60.480 57.143 0.00 0.00 0.00 4.95
171 172 1.216678 CATGCCCCTAAATACACCCCA 59.783 52.381 0.00 0.00 0.00 4.96
172 173 1.383963 TGCCCCTAAATACACCCCAA 58.616 50.000 0.00 0.00 0.00 4.12
173 174 1.717077 TGCCCCTAAATACACCCCAAA 59.283 47.619 0.00 0.00 0.00 3.28
174 175 2.316372 TGCCCCTAAATACACCCCAAAT 59.684 45.455 0.00 0.00 0.00 2.32
175 176 2.963101 GCCCCTAAATACACCCCAAATC 59.037 50.000 0.00 0.00 0.00 2.17
176 177 3.628769 GCCCCTAAATACACCCCAAATCA 60.629 47.826 0.00 0.00 0.00 2.57
177 178 4.615513 CCCCTAAATACACCCCAAATCAA 58.384 43.478 0.00 0.00 0.00 2.57
178 179 5.026790 CCCCTAAATACACCCCAAATCAAA 58.973 41.667 0.00 0.00 0.00 2.69
179 180 5.485708 CCCCTAAATACACCCCAAATCAAAA 59.514 40.000 0.00 0.00 0.00 2.44
180 181 6.403049 CCCTAAATACACCCCAAATCAAAAC 58.597 40.000 0.00 0.00 0.00 2.43
181 182 6.403049 CCTAAATACACCCCAAATCAAAACC 58.597 40.000 0.00 0.00 0.00 3.27
182 183 6.212589 CCTAAATACACCCCAAATCAAAACCT 59.787 38.462 0.00 0.00 0.00 3.50
183 184 7.397761 CCTAAATACACCCCAAATCAAAACCTA 59.602 37.037 0.00 0.00 0.00 3.08
184 185 7.619512 AAATACACCCCAAATCAAAACCTAA 57.380 32.000 0.00 0.00 0.00 2.69
185 186 7.619512 AATACACCCCAAATCAAAACCTAAA 57.380 32.000 0.00 0.00 0.00 1.85
186 187 7.806680 ATACACCCCAAATCAAAACCTAAAT 57.193 32.000 0.00 0.00 0.00 1.40
187 188 6.109156 ACACCCCAAATCAAAACCTAAATC 57.891 37.500 0.00 0.00 0.00 2.17
188 189 5.604650 ACACCCCAAATCAAAACCTAAATCA 59.395 36.000 0.00 0.00 0.00 2.57
189 190 6.165577 CACCCCAAATCAAAACCTAAATCAG 58.834 40.000 0.00 0.00 0.00 2.90
190 191 6.014669 CACCCCAAATCAAAACCTAAATCAGA 60.015 38.462 0.00 0.00 0.00 3.27
191 192 6.556874 ACCCCAAATCAAAACCTAAATCAGAA 59.443 34.615 0.00 0.00 0.00 3.02
192 193 7.071824 ACCCCAAATCAAAACCTAAATCAGAAA 59.928 33.333 0.00 0.00 0.00 2.52
193 194 7.603784 CCCCAAATCAAAACCTAAATCAGAAAG 59.396 37.037 0.00 0.00 0.00 2.62
194 195 7.603784 CCCAAATCAAAACCTAAATCAGAAAGG 59.396 37.037 0.00 0.00 36.42 3.11
195 196 7.118245 CCAAATCAAAACCTAAATCAGAAAGGC 59.882 37.037 0.00 0.00 33.42 4.35
196 197 5.371115 TCAAAACCTAAATCAGAAAGGCG 57.629 39.130 0.00 0.00 33.42 5.52
197 198 4.217550 TCAAAACCTAAATCAGAAAGGCGG 59.782 41.667 0.00 0.00 33.42 6.13
198 199 2.420058 ACCTAAATCAGAAAGGCGGG 57.580 50.000 0.00 0.00 33.42 6.13
199 200 1.064685 ACCTAAATCAGAAAGGCGGGG 60.065 52.381 0.00 0.00 33.42 5.73
200 201 1.025041 CTAAATCAGAAAGGCGGGGC 58.975 55.000 0.00 0.00 0.00 5.80
201 202 0.623723 TAAATCAGAAAGGCGGGGCT 59.376 50.000 0.00 0.00 0.00 5.19
202 203 0.251787 AAATCAGAAAGGCGGGGCTT 60.252 50.000 1.13 1.13 0.00 4.35
203 204 0.623723 AATCAGAAAGGCGGGGCTTA 59.376 50.000 7.98 0.00 0.00 3.09
204 205 0.107165 ATCAGAAAGGCGGGGCTTAC 60.107 55.000 7.98 0.00 0.00 2.34
205 206 1.749258 CAGAAAGGCGGGGCTTACC 60.749 63.158 7.98 3.92 39.11 2.85
206 207 2.228480 AGAAAGGCGGGGCTTACCA 61.228 57.895 7.98 0.00 42.91 3.25
207 208 1.076995 GAAAGGCGGGGCTTACCAT 60.077 57.895 7.98 0.00 42.91 3.55
208 209 1.076995 AAAGGCGGGGCTTACCATC 60.077 57.895 7.98 0.00 42.91 3.51
209 210 1.858739 AAAGGCGGGGCTTACCATCA 61.859 55.000 7.98 0.00 42.91 3.07
210 211 1.645402 AAGGCGGGGCTTACCATCAT 61.645 55.000 5.61 0.00 42.91 2.45
211 212 1.152756 GGCGGGGCTTACCATCATT 60.153 57.895 0.00 0.00 42.91 2.57
212 213 1.455383 GGCGGGGCTTACCATCATTG 61.455 60.000 0.00 0.00 42.91 2.82
213 214 0.465460 GCGGGGCTTACCATCATTGA 60.465 55.000 0.00 0.00 42.91 2.57
214 215 1.308998 CGGGGCTTACCATCATTGAC 58.691 55.000 0.00 0.00 42.91 3.18
215 216 1.408127 CGGGGCTTACCATCATTGACA 60.408 52.381 0.00 0.00 42.91 3.58
216 217 2.733956 GGGGCTTACCATCATTGACAA 58.266 47.619 0.00 0.00 42.91 3.18
217 218 3.096092 GGGGCTTACCATCATTGACAAA 58.904 45.455 0.00 0.00 42.91 2.83
218 219 3.131046 GGGGCTTACCATCATTGACAAAG 59.869 47.826 0.00 0.00 42.91 2.77
219 220 3.763897 GGGCTTACCATCATTGACAAAGT 59.236 43.478 0.00 0.00 39.85 2.66
220 221 4.380867 GGGCTTACCATCATTGACAAAGTG 60.381 45.833 0.00 0.00 39.85 3.16
221 222 4.218417 GGCTTACCATCATTGACAAAGTGT 59.782 41.667 0.00 0.00 35.26 3.55
222 223 5.278957 GGCTTACCATCATTGACAAAGTGTT 60.279 40.000 0.00 0.00 35.26 3.32
223 224 5.630680 GCTTACCATCATTGACAAAGTGTTG 59.369 40.000 0.00 0.00 40.84 3.33
224 225 4.589216 ACCATCATTGACAAAGTGTTGG 57.411 40.909 13.73 13.73 39.22 3.77
225 226 3.960102 ACCATCATTGACAAAGTGTTGGT 59.040 39.130 14.68 14.68 39.74 3.67
226 227 4.202141 ACCATCATTGACAAAGTGTTGGTG 60.202 41.667 17.81 7.56 41.77 4.17
227 228 4.300803 CATCATTGACAAAGTGTTGGTGG 58.699 43.478 0.00 0.00 39.22 4.61
228 229 3.625853 TCATTGACAAAGTGTTGGTGGA 58.374 40.909 0.00 0.00 39.22 4.02
229 230 3.631686 TCATTGACAAAGTGTTGGTGGAG 59.368 43.478 0.00 0.00 39.22 3.86
230 231 2.051334 TGACAAAGTGTTGGTGGAGG 57.949 50.000 0.00 0.00 39.22 4.30
231 232 1.318576 GACAAAGTGTTGGTGGAGGG 58.681 55.000 0.00 0.00 39.22 4.30
232 233 0.106217 ACAAAGTGTTGGTGGAGGGG 60.106 55.000 0.00 0.00 39.22 4.79
233 234 0.184933 CAAAGTGTTGGTGGAGGGGA 59.815 55.000 0.00 0.00 0.00 4.81
234 235 0.478507 AAAGTGTTGGTGGAGGGGAG 59.521 55.000 0.00 0.00 0.00 4.30
235 236 0.401395 AAGTGTTGGTGGAGGGGAGA 60.401 55.000 0.00 0.00 0.00 3.71
236 237 0.178861 AGTGTTGGTGGAGGGGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
237 238 0.035056 GTGTTGGTGGAGGGGAGATG 60.035 60.000 0.00 0.00 0.00 2.90
238 239 0.178876 TGTTGGTGGAGGGGAGATGA 60.179 55.000 0.00 0.00 0.00 2.92
239 240 0.991920 GTTGGTGGAGGGGAGATGAA 59.008 55.000 0.00 0.00 0.00 2.57
240 241 1.065126 GTTGGTGGAGGGGAGATGAAG 60.065 57.143 0.00 0.00 0.00 3.02
241 242 1.274703 TGGTGGAGGGGAGATGAAGC 61.275 60.000 0.00 0.00 0.00 3.86
242 243 1.274703 GGTGGAGGGGAGATGAAGCA 61.275 60.000 0.00 0.00 0.00 3.91
243 244 0.179936 GTGGAGGGGAGATGAAGCAG 59.820 60.000 0.00 0.00 0.00 4.24
244 245 0.252881 TGGAGGGGAGATGAAGCAGT 60.253 55.000 0.00 0.00 0.00 4.40
245 246 0.179936 GGAGGGGAGATGAAGCAGTG 59.820 60.000 0.00 0.00 0.00 3.66
246 247 1.198713 GAGGGGAGATGAAGCAGTGA 58.801 55.000 0.00 0.00 0.00 3.41
247 248 1.767681 GAGGGGAGATGAAGCAGTGAT 59.232 52.381 0.00 0.00 0.00 3.06
248 249 1.489649 AGGGGAGATGAAGCAGTGATG 59.510 52.381 0.00 0.00 0.00 3.07
249 250 1.487976 GGGGAGATGAAGCAGTGATGA 59.512 52.381 0.00 0.00 0.00 2.92
250 251 2.092753 GGGGAGATGAAGCAGTGATGAA 60.093 50.000 0.00 0.00 0.00 2.57
251 252 3.614092 GGGAGATGAAGCAGTGATGAAA 58.386 45.455 0.00 0.00 0.00 2.69
252 253 3.626670 GGGAGATGAAGCAGTGATGAAAG 59.373 47.826 0.00 0.00 0.00 2.62
253 254 3.626670 GGAGATGAAGCAGTGATGAAAGG 59.373 47.826 0.00 0.00 0.00 3.11
254 255 4.260170 GAGATGAAGCAGTGATGAAAGGT 58.740 43.478 0.00 0.00 0.00 3.50
255 256 4.260170 AGATGAAGCAGTGATGAAAGGTC 58.740 43.478 0.00 0.00 0.00 3.85
256 257 2.416747 TGAAGCAGTGATGAAAGGTCG 58.583 47.619 0.00 0.00 0.00 4.79
257 258 1.734465 GAAGCAGTGATGAAAGGTCGG 59.266 52.381 0.00 0.00 0.00 4.79
258 259 0.687354 AGCAGTGATGAAAGGTCGGT 59.313 50.000 0.00 0.00 0.00 4.69
259 260 0.798776 GCAGTGATGAAAGGTCGGTG 59.201 55.000 0.00 0.00 0.00 4.94
260 261 0.798776 CAGTGATGAAAGGTCGGTGC 59.201 55.000 0.00 0.00 0.00 5.01
261 262 0.687354 AGTGATGAAAGGTCGGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
262 263 1.079503 GTGATGAAAGGTCGGTGCTC 58.920 55.000 0.00 0.00 0.00 4.26
263 264 0.389817 TGATGAAAGGTCGGTGCTCG 60.390 55.000 0.00 0.00 40.90 5.03
264 265 0.389948 GATGAAAGGTCGGTGCTCGT 60.390 55.000 0.54 0.00 40.32 4.18
265 266 0.892755 ATGAAAGGTCGGTGCTCGTA 59.107 50.000 0.54 0.00 40.32 3.43
266 267 0.242825 TGAAAGGTCGGTGCTCGTAG 59.757 55.000 0.54 0.00 40.32 3.51
267 268 0.243095 GAAAGGTCGGTGCTCGTAGT 59.757 55.000 0.54 0.00 40.32 2.73
268 269 0.243095 AAAGGTCGGTGCTCGTAGTC 59.757 55.000 0.54 0.00 40.32 2.59
269 270 1.593296 AAGGTCGGTGCTCGTAGTCC 61.593 60.000 0.54 0.00 40.32 3.85
270 271 2.338015 GGTCGGTGCTCGTAGTCCA 61.338 63.158 0.54 0.00 40.32 4.02
271 272 1.136984 GTCGGTGCTCGTAGTCCAG 59.863 63.158 0.54 0.00 40.32 3.86
272 273 1.002990 TCGGTGCTCGTAGTCCAGA 60.003 57.895 0.54 0.00 40.32 3.86
273 274 0.393944 TCGGTGCTCGTAGTCCAGAT 60.394 55.000 0.54 0.00 40.32 2.90
274 275 1.134310 TCGGTGCTCGTAGTCCAGATA 60.134 52.381 0.54 0.00 40.32 1.98
275 276 1.880675 CGGTGCTCGTAGTCCAGATAT 59.119 52.381 0.00 0.00 0.00 1.63
276 277 2.293677 CGGTGCTCGTAGTCCAGATATT 59.706 50.000 0.00 0.00 0.00 1.28
277 278 3.643763 GGTGCTCGTAGTCCAGATATTG 58.356 50.000 0.00 0.00 0.00 1.90
278 279 3.053455 GTGCTCGTAGTCCAGATATTGC 58.947 50.000 0.00 0.00 0.00 3.56
279 280 2.035961 TGCTCGTAGTCCAGATATTGCC 59.964 50.000 0.00 0.00 0.00 4.52
280 281 2.297597 GCTCGTAGTCCAGATATTGCCT 59.702 50.000 0.00 0.00 0.00 4.75
281 282 3.612955 GCTCGTAGTCCAGATATTGCCTC 60.613 52.174 0.00 0.00 0.00 4.70
282 283 2.891580 TCGTAGTCCAGATATTGCCTCC 59.108 50.000 0.00 0.00 0.00 4.30
283 284 2.894126 CGTAGTCCAGATATTGCCTCCT 59.106 50.000 0.00 0.00 0.00 3.69
284 285 4.079970 CGTAGTCCAGATATTGCCTCCTA 58.920 47.826 0.00 0.00 0.00 2.94
285 286 4.707448 CGTAGTCCAGATATTGCCTCCTAT 59.293 45.833 0.00 0.00 0.00 2.57
286 287 5.393569 CGTAGTCCAGATATTGCCTCCTATG 60.394 48.000 0.00 0.00 0.00 2.23
287 288 4.756564 AGTCCAGATATTGCCTCCTATGA 58.243 43.478 0.00 0.00 0.00 2.15
288 289 5.348833 AGTCCAGATATTGCCTCCTATGAT 58.651 41.667 0.00 0.00 0.00 2.45
289 290 5.189342 AGTCCAGATATTGCCTCCTATGATG 59.811 44.000 0.00 0.00 0.00 3.07
290 291 4.080695 TCCAGATATTGCCTCCTATGATGC 60.081 45.833 0.00 0.00 33.25 3.91
291 292 4.080469 CCAGATATTGCCTCCTATGATGCT 60.080 45.833 0.00 0.00 33.73 3.79
292 293 5.117584 CAGATATTGCCTCCTATGATGCTC 58.882 45.833 0.00 0.00 33.73 4.26
293 294 4.781621 AGATATTGCCTCCTATGATGCTCA 59.218 41.667 0.00 0.00 33.73 4.26
294 295 2.627515 TTGCCTCCTATGATGCTCAC 57.372 50.000 0.00 0.00 33.73 3.51
295 296 0.761187 TGCCTCCTATGATGCTCACC 59.239 55.000 0.00 0.00 33.73 4.02
296 297 0.320247 GCCTCCTATGATGCTCACCG 60.320 60.000 0.00 0.00 0.00 4.94
297 298 1.043816 CCTCCTATGATGCTCACCGT 58.956 55.000 0.00 0.00 0.00 4.83
298 299 1.414181 CCTCCTATGATGCTCACCGTT 59.586 52.381 0.00 0.00 0.00 4.44
299 300 2.477825 CTCCTATGATGCTCACCGTTG 58.522 52.381 0.00 0.00 0.00 4.10
300 301 0.940126 CCTATGATGCTCACCGTTGC 59.060 55.000 0.00 0.00 0.00 4.17
301 302 0.940126 CTATGATGCTCACCGTTGCC 59.060 55.000 0.00 0.00 0.00 4.52
302 303 0.809636 TATGATGCTCACCGTTGCCG 60.810 55.000 0.00 0.00 0.00 5.69
313 314 2.738147 CGTTGCCGGTTAGAGAGTG 58.262 57.895 1.90 0.00 0.00 3.51
314 315 0.736325 CGTTGCCGGTTAGAGAGTGG 60.736 60.000 1.90 0.00 0.00 4.00
315 316 0.606604 GTTGCCGGTTAGAGAGTGGA 59.393 55.000 1.90 0.00 0.00 4.02
316 317 1.001633 GTTGCCGGTTAGAGAGTGGAA 59.998 52.381 1.90 0.00 0.00 3.53
317 318 0.895530 TGCCGGTTAGAGAGTGGAAG 59.104 55.000 1.90 0.00 0.00 3.46
318 319 0.175989 GCCGGTTAGAGAGTGGAAGG 59.824 60.000 1.90 0.00 0.00 3.46
319 320 1.848652 CCGGTTAGAGAGTGGAAGGA 58.151 55.000 0.00 0.00 0.00 3.36
320 321 1.751924 CCGGTTAGAGAGTGGAAGGAG 59.248 57.143 0.00 0.00 0.00 3.69
321 322 1.751924 CGGTTAGAGAGTGGAAGGAGG 59.248 57.143 0.00 0.00 0.00 4.30
322 323 2.112190 GGTTAGAGAGTGGAAGGAGGG 58.888 57.143 0.00 0.00 0.00 4.30
323 324 2.112190 GTTAGAGAGTGGAAGGAGGGG 58.888 57.143 0.00 0.00 0.00 4.79
324 325 1.695065 TAGAGAGTGGAAGGAGGGGA 58.305 55.000 0.00 0.00 0.00 4.81
325 326 0.338120 AGAGAGTGGAAGGAGGGGAG 59.662 60.000 0.00 0.00 0.00 4.30
326 327 0.336737 GAGAGTGGAAGGAGGGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
327 328 0.338120 AGAGTGGAAGGAGGGGAGAG 59.662 60.000 0.00 0.00 0.00 3.20
328 329 0.041982 GAGTGGAAGGAGGGGAGAGT 59.958 60.000 0.00 0.00 0.00 3.24
329 330 0.252467 AGTGGAAGGAGGGGAGAGTG 60.252 60.000 0.00 0.00 0.00 3.51
330 331 0.252284 GTGGAAGGAGGGGAGAGTGA 60.252 60.000 0.00 0.00 0.00 3.41
331 332 0.041833 TGGAAGGAGGGGAGAGTGAG 59.958 60.000 0.00 0.00 0.00 3.51
332 333 0.041982 GGAAGGAGGGGAGAGTGAGT 59.958 60.000 0.00 0.00 0.00 3.41
333 334 1.190643 GAAGGAGGGGAGAGTGAGTG 58.809 60.000 0.00 0.00 0.00 3.51
334 335 0.252467 AAGGAGGGGAGAGTGAGTGG 60.252 60.000 0.00 0.00 0.00 4.00
335 336 1.079438 GGAGGGGAGAGTGAGTGGT 59.921 63.158 0.00 0.00 0.00 4.16
336 337 1.261238 GGAGGGGAGAGTGAGTGGTG 61.261 65.000 0.00 0.00 0.00 4.17
337 338 0.251832 GAGGGGAGAGTGAGTGGTGA 60.252 60.000 0.00 0.00 0.00 4.02
338 339 0.252012 AGGGGAGAGTGAGTGGTGAG 60.252 60.000 0.00 0.00 0.00 3.51
339 340 0.251832 GGGGAGAGTGAGTGGTGAGA 60.252 60.000 0.00 0.00 0.00 3.27
340 341 1.633774 GGGAGAGTGAGTGGTGAGAA 58.366 55.000 0.00 0.00 0.00 2.87
341 342 1.971357 GGGAGAGTGAGTGGTGAGAAA 59.029 52.381 0.00 0.00 0.00 2.52
342 343 2.028567 GGGAGAGTGAGTGGTGAGAAAG 60.029 54.545 0.00 0.00 0.00 2.62
343 344 2.028567 GGAGAGTGAGTGGTGAGAAAGG 60.029 54.545 0.00 0.00 0.00 3.11
344 345 1.974236 AGAGTGAGTGGTGAGAAAGGG 59.026 52.381 0.00 0.00 0.00 3.95
345 346 1.002544 GAGTGAGTGGTGAGAAAGGGG 59.997 57.143 0.00 0.00 0.00 4.79
346 347 0.765510 GTGAGTGGTGAGAAAGGGGT 59.234 55.000 0.00 0.00 0.00 4.95
347 348 0.764890 TGAGTGGTGAGAAAGGGGTG 59.235 55.000 0.00 0.00 0.00 4.61
348 349 1.056660 GAGTGGTGAGAAAGGGGTGA 58.943 55.000 0.00 0.00 0.00 4.02
349 350 1.002544 GAGTGGTGAGAAAGGGGTGAG 59.997 57.143 0.00 0.00 0.00 3.51
350 351 0.036875 GTGGTGAGAAAGGGGTGAGG 59.963 60.000 0.00 0.00 0.00 3.86
351 352 1.133809 TGGTGAGAAAGGGGTGAGGG 61.134 60.000 0.00 0.00 0.00 4.30
352 353 1.685820 GTGAGAAAGGGGTGAGGGG 59.314 63.158 0.00 0.00 0.00 4.79
353 354 0.840722 GTGAGAAAGGGGTGAGGGGA 60.841 60.000 0.00 0.00 0.00 4.81
354 355 0.121197 TGAGAAAGGGGTGAGGGGAT 59.879 55.000 0.00 0.00 0.00 3.85
355 356 1.299939 GAGAAAGGGGTGAGGGGATT 58.700 55.000 0.00 0.00 0.00 3.01
356 357 1.641192 GAGAAAGGGGTGAGGGGATTT 59.359 52.381 0.00 0.00 0.00 2.17
357 358 2.850568 GAGAAAGGGGTGAGGGGATTTA 59.149 50.000 0.00 0.00 0.00 1.40
358 359 3.463704 GAGAAAGGGGTGAGGGGATTTAT 59.536 47.826 0.00 0.00 0.00 1.40
359 360 3.205282 AGAAAGGGGTGAGGGGATTTATG 59.795 47.826 0.00 0.00 0.00 1.90
360 361 1.534338 AGGGGTGAGGGGATTTATGG 58.466 55.000 0.00 0.00 0.00 2.74
361 362 0.178961 GGGGTGAGGGGATTTATGGC 60.179 60.000 0.00 0.00 0.00 4.40
362 363 0.555769 GGGTGAGGGGATTTATGGCA 59.444 55.000 0.00 0.00 0.00 4.92
363 364 1.692411 GGTGAGGGGATTTATGGCAC 58.308 55.000 0.00 0.00 0.00 5.01
364 365 1.692411 GTGAGGGGATTTATGGCACC 58.308 55.000 0.00 0.00 0.00 5.01
365 366 0.182537 TGAGGGGATTTATGGCACCG 59.817 55.000 0.00 0.00 0.00 4.94
366 367 1.152756 AGGGGATTTATGGCACCGC 60.153 57.895 0.00 0.00 35.95 5.68
376 377 4.785453 GGCACCGCCTTGGGAGAG 62.785 72.222 0.00 0.00 46.69 3.20
377 378 4.021925 GCACCGCCTTGGGAGAGT 62.022 66.667 0.00 0.00 44.64 3.24
378 379 2.046892 CACCGCCTTGGGAGAGTG 60.047 66.667 0.00 0.00 44.64 3.51
379 380 2.203788 ACCGCCTTGGGAGAGTGA 60.204 61.111 0.00 0.00 44.64 3.41
380 381 2.286523 ACCGCCTTGGGAGAGTGAG 61.287 63.158 0.00 0.00 44.64 3.51
381 382 2.286523 CCGCCTTGGGAGAGTGAGT 61.287 63.158 0.00 0.00 0.00 3.41
382 383 1.079543 CGCCTTGGGAGAGTGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
383 384 1.821061 CGCCTTGGGAGAGTGAGTGT 61.821 60.000 0.00 0.00 0.00 3.55
384 385 0.398318 GCCTTGGGAGAGTGAGTGTT 59.602 55.000 0.00 0.00 0.00 3.32
385 386 1.879796 GCCTTGGGAGAGTGAGTGTTG 60.880 57.143 0.00 0.00 0.00 3.33
386 387 1.271054 CCTTGGGAGAGTGAGTGTTGG 60.271 57.143 0.00 0.00 0.00 3.77
387 388 1.417890 CTTGGGAGAGTGAGTGTTGGT 59.582 52.381 0.00 0.00 0.00 3.67
388 389 0.758734 TGGGAGAGTGAGTGTTGGTG 59.241 55.000 0.00 0.00 0.00 4.17
389 390 0.035458 GGGAGAGTGAGTGTTGGTGG 59.965 60.000 0.00 0.00 0.00 4.61
390 391 1.048601 GGAGAGTGAGTGTTGGTGGA 58.951 55.000 0.00 0.00 0.00 4.02
391 392 1.001406 GGAGAGTGAGTGTTGGTGGAG 59.999 57.143 0.00 0.00 0.00 3.86
392 393 1.001406 GAGAGTGAGTGTTGGTGGAGG 59.999 57.143 0.00 0.00 0.00 4.30
393 394 0.035458 GAGTGAGTGTTGGTGGAGGG 59.965 60.000 0.00 0.00 0.00 4.30
394 395 1.073199 GTGAGTGTTGGTGGAGGGG 59.927 63.158 0.00 0.00 0.00 4.79
395 396 1.074090 TGAGTGTTGGTGGAGGGGA 60.074 57.895 0.00 0.00 0.00 4.81
396 397 1.127567 TGAGTGTTGGTGGAGGGGAG 61.128 60.000 0.00 0.00 0.00 4.30
397 398 0.836400 GAGTGTTGGTGGAGGGGAGA 60.836 60.000 0.00 0.00 0.00 3.71
398 399 0.838122 AGTGTTGGTGGAGGGGAGAG 60.838 60.000 0.00 0.00 0.00 3.20
399 400 1.128188 GTGTTGGTGGAGGGGAGAGT 61.128 60.000 0.00 0.00 0.00 3.24
400 401 1.127567 TGTTGGTGGAGGGGAGAGTG 61.128 60.000 0.00 0.00 0.00 3.51
401 402 1.538876 TTGGTGGAGGGGAGAGTGG 60.539 63.158 0.00 0.00 0.00 4.00
402 403 2.043527 TTGGTGGAGGGGAGAGTGGA 62.044 60.000 0.00 0.00 0.00 4.02
403 404 1.229529 GGTGGAGGGGAGAGTGGAA 60.230 63.158 0.00 0.00 0.00 3.53
404 405 1.268283 GGTGGAGGGGAGAGTGGAAG 61.268 65.000 0.00 0.00 0.00 3.46
405 406 1.081092 TGGAGGGGAGAGTGGAAGG 59.919 63.158 0.00 0.00 0.00 3.46
406 407 1.392534 GGAGGGGAGAGTGGAAGGA 59.607 63.158 0.00 0.00 0.00 3.36
407 408 0.689412 GGAGGGGAGAGTGGAAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
408 409 0.689412 GAGGGGAGAGTGGAAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
415 416 1.536662 AGTGGAAGGAGGGAAGCGT 60.537 57.895 0.00 0.00 0.00 5.07
418 419 0.543410 TGGAAGGAGGGAAGCGTGTA 60.543 55.000 0.00 0.00 0.00 2.90
419 420 0.611714 GGAAGGAGGGAAGCGTGTAA 59.388 55.000 0.00 0.00 0.00 2.41
423 424 1.025113 GGAGGGAAGCGTGTAAAGCC 61.025 60.000 0.00 0.00 44.61 4.35
435 436 0.377203 GTAAAGCCGCATGTAGCCAC 59.623 55.000 5.60 0.00 41.38 5.01
436 437 0.035915 TAAAGCCGCATGTAGCCACA 60.036 50.000 5.60 0.00 41.38 4.17
437 438 0.680921 AAAGCCGCATGTAGCCACAT 60.681 50.000 5.60 0.00 46.58 3.21
459 460 1.592669 CTACCTTGCATCGCTCGGG 60.593 63.158 0.00 0.00 0.00 5.14
460 461 3.733344 TACCTTGCATCGCTCGGGC 62.733 63.158 0.00 0.00 0.00 6.13
469 470 4.504916 CGCTCGGGCCTGACTCAG 62.505 72.222 11.27 1.53 34.44 3.35
474 475 2.985456 GGGCCTGACTCAGTGGAG 59.015 66.667 0.84 0.00 46.96 3.86
488 489 1.616865 AGTGGAGACAACCGATTCGAA 59.383 47.619 7.83 0.00 46.06 3.71
489 490 2.036733 AGTGGAGACAACCGATTCGAAA 59.963 45.455 7.83 0.00 46.06 3.46
490 491 2.412089 GTGGAGACAACCGATTCGAAAG 59.588 50.000 7.83 0.00 46.06 2.62
493 494 3.497262 GGAGACAACCGATTCGAAAGTTT 59.503 43.478 7.83 0.00 0.00 2.66
502 503 3.430218 CGATTCGAAAGTTTCAGCAGAGT 59.570 43.478 15.67 1.75 0.00 3.24
506 507 2.478134 CGAAAGTTTCAGCAGAGTCAGG 59.522 50.000 15.67 0.00 0.00 3.86
512 513 1.203441 TCAGCAGAGTCAGGCCCAAT 61.203 55.000 0.00 0.00 0.00 3.16
513 514 0.543277 CAGCAGAGTCAGGCCCAATA 59.457 55.000 0.00 0.00 0.00 1.90
557 558 0.627451 AGATTTGGATGCAGGCCAGA 59.373 50.000 5.01 7.50 36.64 3.86
567 568 1.284491 TGCAGGCCAGACATCCAAATA 59.716 47.619 5.01 0.00 0.00 1.40
578 579 7.037438 CCAGACATCCAAATAGGTGAAAATTG 58.963 38.462 0.00 0.00 39.02 2.32
639 641 1.686587 TGAGACCACGTGTTCATCTGT 59.313 47.619 15.90 3.38 0.00 3.41
738 1243 3.626217 GGGCCGGAAACATTACTCTTTAG 59.374 47.826 5.05 0.00 0.00 1.85
834 1365 2.698855 TCTATCTTCCTTGGCAGTGC 57.301 50.000 6.55 6.55 0.00 4.40
906 1438 4.883585 GTCCAACAAGATGAATGGATGCTA 59.116 41.667 10.96 0.00 38.44 3.49
917 1449 0.846015 TGGATGCTAGGTCATTGGGG 59.154 55.000 0.00 0.00 0.00 4.96
1042 1580 3.951663 TCTTCACAGGAGACGATGAGTA 58.048 45.455 0.00 0.00 31.90 2.59
1044 1582 4.765339 TCTTCACAGGAGACGATGAGTAAA 59.235 41.667 0.00 0.00 31.90 2.01
1152 1690 5.444745 GCTTTGCACACTCGATTAGTTAGTC 60.445 44.000 0.00 0.00 35.76 2.59
1177 1715 1.062440 GTGCACGCATTGATCAATCGA 59.938 47.619 29.88 15.76 0.00 3.59
1198 1736 3.733024 TCGATTCATTTTGTACGTGCC 57.267 42.857 0.00 0.00 0.00 5.01
1403 1941 1.301401 CGACCTCTTCCACGGCAAA 60.301 57.895 0.00 0.00 0.00 3.68
1766 2313 3.575247 ACCGACCCAACCATGGCA 61.575 61.111 13.04 0.00 46.09 4.92
1904 2451 1.000274 CAGGTCATATGCGTCGATGGA 60.000 52.381 6.79 3.50 0.00 3.41
1936 2483 2.022195 AGCAGCCAAGCTATGACAATG 58.978 47.619 0.00 0.00 44.50 2.82
1957 2504 2.688507 CACATGTAACCGTGAGAAGCT 58.311 47.619 0.00 0.00 35.02 3.74
1979 2526 3.073503 TGCATCCATGGCTAGAAGCTAAT 59.926 43.478 6.96 0.00 41.99 1.73
1985 2532 5.951747 TCCATGGCTAGAAGCTAATTTTTGT 59.048 36.000 6.96 0.00 41.99 2.83
2152 2702 7.829725 TGACAAGTTATTGCTGCTTCAAATAT 58.170 30.769 0.00 0.00 40.27 1.28
2153 2703 7.756272 TGACAAGTTATTGCTGCTTCAAATATG 59.244 33.333 0.00 0.00 40.27 1.78
2154 2704 7.037438 ACAAGTTATTGCTGCTTCAAATATGG 58.963 34.615 0.00 0.00 40.27 2.74
2155 2705 6.152932 AGTTATTGCTGCTTCAAATATGGG 57.847 37.500 0.00 0.00 0.00 4.00
2156 2706 5.893255 AGTTATTGCTGCTTCAAATATGGGA 59.107 36.000 0.00 0.00 0.00 4.37
2157 2707 4.931661 ATTGCTGCTTCAAATATGGGAG 57.068 40.909 0.00 0.00 0.00 4.30
2158 2708 3.650281 TGCTGCTTCAAATATGGGAGA 57.350 42.857 0.00 0.00 0.00 3.71
2159 2709 3.966979 TGCTGCTTCAAATATGGGAGAA 58.033 40.909 0.00 0.00 0.00 2.87
2160 2710 4.343231 TGCTGCTTCAAATATGGGAGAAA 58.657 39.130 0.00 0.00 0.00 2.52
2161 2711 4.771577 TGCTGCTTCAAATATGGGAGAAAA 59.228 37.500 0.00 0.00 0.00 2.29
2162 2712 5.105063 GCTGCTTCAAATATGGGAGAAAAC 58.895 41.667 0.00 0.00 0.00 2.43
2163 2713 5.105595 GCTGCTTCAAATATGGGAGAAAACT 60.106 40.000 0.00 0.00 0.00 2.66
2164 2714 6.573094 GCTGCTTCAAATATGGGAGAAAACTT 60.573 38.462 0.00 0.00 0.00 2.66
2165 2715 7.362920 GCTGCTTCAAATATGGGAGAAAACTTA 60.363 37.037 0.00 0.00 0.00 2.24
2166 2716 8.055279 TGCTTCAAATATGGGAGAAAACTTAG 57.945 34.615 0.00 0.00 0.00 2.18
2167 2717 6.975197 GCTTCAAATATGGGAGAAAACTTAGC 59.025 38.462 0.00 0.00 0.00 3.09
2168 2718 7.148000 GCTTCAAATATGGGAGAAAACTTAGCT 60.148 37.037 0.00 0.00 0.00 3.32
2171 2721 7.669722 TCAAATATGGGAGAAAACTTAGCTTGT 59.330 33.333 0.00 0.00 0.00 3.16
2213 2763 0.185901 ACCCCAACAGAGCACAACAT 59.814 50.000 0.00 0.00 0.00 2.71
2311 2861 3.692101 AGAGACTCAACGACATGTAGGAG 59.308 47.826 10.86 10.11 37.84 3.69
2341 2892 2.126307 CCTAGGATCGATGCCGCG 60.126 66.667 13.85 0.00 35.37 6.46
2641 3193 6.762661 TGTAAACAAAAGTAGAGGCGTAGTTT 59.237 34.615 0.00 0.00 0.00 2.66
2656 3208 3.985925 CGTAGTTTCCTGACTTGGTGTAC 59.014 47.826 0.00 0.00 0.00 2.90
2717 3269 6.904011 GCTCATGAGAAAATATTCACAACTCG 59.096 38.462 27.04 0.00 39.16 4.18
2767 3319 1.840635 AGAACTTCCCTACCATCAGGC 59.159 52.381 0.00 0.00 39.06 4.85
2769 3321 1.668826 ACTTCCCTACCATCAGGCAA 58.331 50.000 0.00 0.00 39.06 4.52
2919 3471 1.671379 GAACAAGTGAGGGCCGGTC 60.671 63.158 1.90 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.806244 GGGTTCATATGGACCGATTTCG 59.194 50.000 24.27 0.00 39.44 3.46
24 25 2.838637 TTTGGGGGTTCATATGGACC 57.161 50.000 23.43 23.43 0.00 4.46
57 58 5.818136 ATTGATGTTCATTTAGGGTGTCG 57.182 39.130 0.00 0.00 0.00 4.35
109 110 2.122783 TAAGGCTTCGATTTGGGGTG 57.877 50.000 1.30 0.00 0.00 4.61
125 126 7.749126 GGGTTTAACTTCACACATTCGATTAAG 59.251 37.037 0.00 0.00 0.00 1.85
127 128 6.711194 TGGGTTTAACTTCACACATTCGATTA 59.289 34.615 0.00 0.00 0.00 1.75
128 129 5.533154 TGGGTTTAACTTCACACATTCGATT 59.467 36.000 0.00 0.00 0.00 3.34
129 130 5.067273 TGGGTTTAACTTCACACATTCGAT 58.933 37.500 0.00 0.00 0.00 3.59
130 131 4.452825 TGGGTTTAACTTCACACATTCGA 58.547 39.130 0.00 0.00 0.00 3.71
133 134 4.262420 GGCATGGGTTTAACTTCACACATT 60.262 41.667 0.00 0.00 34.66 2.71
134 135 3.258123 GGCATGGGTTTAACTTCACACAT 59.742 43.478 0.00 0.00 37.53 3.21
136 137 2.029380 GGGCATGGGTTTAACTTCACAC 60.029 50.000 0.00 0.00 0.00 3.82
137 138 2.243810 GGGCATGGGTTTAACTTCACA 58.756 47.619 0.00 0.00 0.00 3.58
138 139 1.548719 GGGGCATGGGTTTAACTTCAC 59.451 52.381 0.00 0.00 0.00 3.18
139 140 1.431243 AGGGGCATGGGTTTAACTTCA 59.569 47.619 0.00 0.00 0.00 3.02
140 141 2.231716 AGGGGCATGGGTTTAACTTC 57.768 50.000 0.00 0.00 0.00 3.01
141 142 3.837399 TTAGGGGCATGGGTTTAACTT 57.163 42.857 0.00 0.00 0.00 2.66
142 143 3.837399 TTTAGGGGCATGGGTTTAACT 57.163 42.857 0.00 0.00 0.00 2.24
143 144 4.957327 TGTATTTAGGGGCATGGGTTTAAC 59.043 41.667 0.00 0.00 0.00 2.01
145 146 4.538738 GTGTATTTAGGGGCATGGGTTTA 58.461 43.478 0.00 0.00 0.00 2.01
146 147 3.371034 GTGTATTTAGGGGCATGGGTTT 58.629 45.455 0.00 0.00 0.00 3.27
147 148 2.358826 GGTGTATTTAGGGGCATGGGTT 60.359 50.000 0.00 0.00 0.00 4.11
148 149 1.216930 GGTGTATTTAGGGGCATGGGT 59.783 52.381 0.00 0.00 0.00 4.51
149 150 1.480498 GGGTGTATTTAGGGGCATGGG 60.480 57.143 0.00 0.00 0.00 4.00
150 151 1.480498 GGGGTGTATTTAGGGGCATGG 60.480 57.143 0.00 0.00 0.00 3.66
151 152 1.216678 TGGGGTGTATTTAGGGGCATG 59.783 52.381 0.00 0.00 0.00 4.06
152 153 1.614449 TGGGGTGTATTTAGGGGCAT 58.386 50.000 0.00 0.00 0.00 4.40
153 154 1.383963 TTGGGGTGTATTTAGGGGCA 58.616 50.000 0.00 0.00 0.00 5.36
154 155 2.535836 TTTGGGGTGTATTTAGGGGC 57.464 50.000 0.00 0.00 0.00 5.80
155 156 4.258457 TGATTTGGGGTGTATTTAGGGG 57.742 45.455 0.00 0.00 0.00 4.79
156 157 6.403049 GTTTTGATTTGGGGTGTATTTAGGG 58.597 40.000 0.00 0.00 0.00 3.53
157 158 6.212589 AGGTTTTGATTTGGGGTGTATTTAGG 59.787 38.462 0.00 0.00 0.00 2.69
158 159 7.239763 AGGTTTTGATTTGGGGTGTATTTAG 57.760 36.000 0.00 0.00 0.00 1.85
159 160 8.722622 TTAGGTTTTGATTTGGGGTGTATTTA 57.277 30.769 0.00 0.00 0.00 1.40
160 161 7.619512 TTAGGTTTTGATTTGGGGTGTATTT 57.380 32.000 0.00 0.00 0.00 1.40
161 162 7.619512 TTTAGGTTTTGATTTGGGGTGTATT 57.380 32.000 0.00 0.00 0.00 1.89
162 163 7.456269 TGATTTAGGTTTTGATTTGGGGTGTAT 59.544 33.333 0.00 0.00 0.00 2.29
163 164 6.782988 TGATTTAGGTTTTGATTTGGGGTGTA 59.217 34.615 0.00 0.00 0.00 2.90
164 165 5.604650 TGATTTAGGTTTTGATTTGGGGTGT 59.395 36.000 0.00 0.00 0.00 4.16
165 166 6.014669 TCTGATTTAGGTTTTGATTTGGGGTG 60.015 38.462 0.00 0.00 0.00 4.61
166 167 6.081356 TCTGATTTAGGTTTTGATTTGGGGT 58.919 36.000 0.00 0.00 0.00 4.95
167 168 6.603940 TCTGATTTAGGTTTTGATTTGGGG 57.396 37.500 0.00 0.00 0.00 4.96
168 169 7.603784 CCTTTCTGATTTAGGTTTTGATTTGGG 59.396 37.037 0.00 0.00 0.00 4.12
169 170 7.118245 GCCTTTCTGATTTAGGTTTTGATTTGG 59.882 37.037 0.00 0.00 0.00 3.28
170 171 7.148755 CGCCTTTCTGATTTAGGTTTTGATTTG 60.149 37.037 0.00 0.00 0.00 2.32
171 172 6.868339 CGCCTTTCTGATTTAGGTTTTGATTT 59.132 34.615 0.00 0.00 0.00 2.17
172 173 6.389906 CGCCTTTCTGATTTAGGTTTTGATT 58.610 36.000 0.00 0.00 0.00 2.57
173 174 5.105756 CCGCCTTTCTGATTTAGGTTTTGAT 60.106 40.000 0.00 0.00 0.00 2.57
174 175 4.217550 CCGCCTTTCTGATTTAGGTTTTGA 59.782 41.667 0.00 0.00 0.00 2.69
175 176 4.485163 CCGCCTTTCTGATTTAGGTTTTG 58.515 43.478 0.00 0.00 0.00 2.44
176 177 3.509967 CCCGCCTTTCTGATTTAGGTTTT 59.490 43.478 0.00 0.00 0.00 2.43
177 178 3.089284 CCCGCCTTTCTGATTTAGGTTT 58.911 45.455 0.00 0.00 0.00 3.27
178 179 2.620627 CCCCGCCTTTCTGATTTAGGTT 60.621 50.000 0.00 0.00 0.00 3.50
179 180 1.064685 CCCCGCCTTTCTGATTTAGGT 60.065 52.381 0.00 0.00 0.00 3.08
180 181 1.680338 CCCCGCCTTTCTGATTTAGG 58.320 55.000 0.00 0.00 0.00 2.69
181 182 1.025041 GCCCCGCCTTTCTGATTTAG 58.975 55.000 0.00 0.00 0.00 1.85
182 183 0.623723 AGCCCCGCCTTTCTGATTTA 59.376 50.000 0.00 0.00 0.00 1.40
183 184 0.251787 AAGCCCCGCCTTTCTGATTT 60.252 50.000 0.00 0.00 0.00 2.17
184 185 0.623723 TAAGCCCCGCCTTTCTGATT 59.376 50.000 0.00 0.00 0.00 2.57
185 186 0.107165 GTAAGCCCCGCCTTTCTGAT 60.107 55.000 0.00 0.00 0.00 2.90
186 187 1.298667 GTAAGCCCCGCCTTTCTGA 59.701 57.895 0.00 0.00 0.00 3.27
187 188 1.749258 GGTAAGCCCCGCCTTTCTG 60.749 63.158 0.00 0.00 0.00 3.02
188 189 1.571773 ATGGTAAGCCCCGCCTTTCT 61.572 55.000 0.00 0.00 0.00 2.52
189 190 1.076995 ATGGTAAGCCCCGCCTTTC 60.077 57.895 0.00 0.00 0.00 2.62
190 191 1.076995 GATGGTAAGCCCCGCCTTT 60.077 57.895 0.00 0.00 0.00 3.11
191 192 1.645402 ATGATGGTAAGCCCCGCCTT 61.645 55.000 0.00 0.00 0.00 4.35
192 193 1.645402 AATGATGGTAAGCCCCGCCT 61.645 55.000 0.00 0.00 0.00 5.52
193 194 1.152756 AATGATGGTAAGCCCCGCC 60.153 57.895 0.00 0.00 0.00 6.13
194 195 0.465460 TCAATGATGGTAAGCCCCGC 60.465 55.000 0.00 0.00 0.00 6.13
195 196 1.308998 GTCAATGATGGTAAGCCCCG 58.691 55.000 0.00 0.00 0.00 5.73
196 197 2.435372 TGTCAATGATGGTAAGCCCC 57.565 50.000 0.00 0.00 0.00 5.80
197 198 3.763897 ACTTTGTCAATGATGGTAAGCCC 59.236 43.478 5.52 0.00 0.00 5.19
198 199 4.218417 ACACTTTGTCAATGATGGTAAGCC 59.782 41.667 5.52 0.00 0.00 4.35
199 200 5.376854 ACACTTTGTCAATGATGGTAAGC 57.623 39.130 5.52 0.00 0.00 3.09
200 201 6.151691 CCAACACTTTGTCAATGATGGTAAG 58.848 40.000 5.52 0.00 0.00 2.34
201 202 5.596361 ACCAACACTTTGTCAATGATGGTAA 59.404 36.000 15.70 0.00 36.91 2.85
202 203 5.009510 CACCAACACTTTGTCAATGATGGTA 59.990 40.000 16.44 0.00 36.56 3.25
203 204 3.960102 ACCAACACTTTGTCAATGATGGT 59.040 39.130 12.84 12.84 33.99 3.55
204 205 4.300803 CACCAACACTTTGTCAATGATGG 58.699 43.478 11.83 11.83 0.00 3.51
205 206 4.037803 TCCACCAACACTTTGTCAATGATG 59.962 41.667 5.52 0.00 0.00 3.07
206 207 4.214310 TCCACCAACACTTTGTCAATGAT 58.786 39.130 5.52 0.00 0.00 2.45
207 208 3.625853 TCCACCAACACTTTGTCAATGA 58.374 40.909 5.52 0.00 0.00 2.57
208 209 3.243501 CCTCCACCAACACTTTGTCAATG 60.244 47.826 0.00 0.00 0.00 2.82
209 210 2.958355 CCTCCACCAACACTTTGTCAAT 59.042 45.455 0.00 0.00 0.00 2.57
210 211 2.374184 CCTCCACCAACACTTTGTCAA 58.626 47.619 0.00 0.00 0.00 3.18
211 212 1.409521 CCCTCCACCAACACTTTGTCA 60.410 52.381 0.00 0.00 0.00 3.58
212 213 1.318576 CCCTCCACCAACACTTTGTC 58.681 55.000 0.00 0.00 0.00 3.18
213 214 0.106217 CCCCTCCACCAACACTTTGT 60.106 55.000 0.00 0.00 0.00 2.83
214 215 0.184933 TCCCCTCCACCAACACTTTG 59.815 55.000 0.00 0.00 0.00 2.77
215 216 0.478507 CTCCCCTCCACCAACACTTT 59.521 55.000 0.00 0.00 0.00 2.66
216 217 0.401395 TCTCCCCTCCACCAACACTT 60.401 55.000 0.00 0.00 0.00 3.16
217 218 0.178861 ATCTCCCCTCCACCAACACT 60.179 55.000 0.00 0.00 0.00 3.55
218 219 0.035056 CATCTCCCCTCCACCAACAC 60.035 60.000 0.00 0.00 0.00 3.32
219 220 0.178876 TCATCTCCCCTCCACCAACA 60.179 55.000 0.00 0.00 0.00 3.33
220 221 0.991920 TTCATCTCCCCTCCACCAAC 59.008 55.000 0.00 0.00 0.00 3.77
221 222 1.289160 CTTCATCTCCCCTCCACCAA 58.711 55.000 0.00 0.00 0.00 3.67
222 223 1.274703 GCTTCATCTCCCCTCCACCA 61.275 60.000 0.00 0.00 0.00 4.17
223 224 1.274703 TGCTTCATCTCCCCTCCACC 61.275 60.000 0.00 0.00 0.00 4.61
224 225 0.179936 CTGCTTCATCTCCCCTCCAC 59.820 60.000 0.00 0.00 0.00 4.02
225 226 0.252881 ACTGCTTCATCTCCCCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
226 227 0.179936 CACTGCTTCATCTCCCCTCC 59.820 60.000 0.00 0.00 0.00 4.30
227 228 1.198713 TCACTGCTTCATCTCCCCTC 58.801 55.000 0.00 0.00 0.00 4.30
228 229 1.489649 CATCACTGCTTCATCTCCCCT 59.510 52.381 0.00 0.00 0.00 4.79
229 230 1.487976 TCATCACTGCTTCATCTCCCC 59.512 52.381 0.00 0.00 0.00 4.81
230 231 2.996249 TCATCACTGCTTCATCTCCC 57.004 50.000 0.00 0.00 0.00 4.30
231 232 3.626670 CCTTTCATCACTGCTTCATCTCC 59.373 47.826 0.00 0.00 0.00 3.71
232 233 4.260170 ACCTTTCATCACTGCTTCATCTC 58.740 43.478 0.00 0.00 0.00 2.75
233 234 4.260170 GACCTTTCATCACTGCTTCATCT 58.740 43.478 0.00 0.00 0.00 2.90
234 235 3.063180 CGACCTTTCATCACTGCTTCATC 59.937 47.826 0.00 0.00 0.00 2.92
235 236 3.005554 CGACCTTTCATCACTGCTTCAT 58.994 45.455 0.00 0.00 0.00 2.57
236 237 2.416747 CGACCTTTCATCACTGCTTCA 58.583 47.619 0.00 0.00 0.00 3.02
237 238 1.734465 CCGACCTTTCATCACTGCTTC 59.266 52.381 0.00 0.00 0.00 3.86
238 239 1.072331 ACCGACCTTTCATCACTGCTT 59.928 47.619 0.00 0.00 0.00 3.91
239 240 0.687354 ACCGACCTTTCATCACTGCT 59.313 50.000 0.00 0.00 0.00 4.24
240 241 0.798776 CACCGACCTTTCATCACTGC 59.201 55.000 0.00 0.00 0.00 4.40
241 242 0.798776 GCACCGACCTTTCATCACTG 59.201 55.000 0.00 0.00 0.00 3.66
242 243 0.687354 AGCACCGACCTTTCATCACT 59.313 50.000 0.00 0.00 0.00 3.41
243 244 1.079503 GAGCACCGACCTTTCATCAC 58.920 55.000 0.00 0.00 0.00 3.06
244 245 0.389817 CGAGCACCGACCTTTCATCA 60.390 55.000 0.00 0.00 41.76 3.07
245 246 0.389948 ACGAGCACCGACCTTTCATC 60.390 55.000 5.53 0.00 41.76 2.92
246 247 0.892755 TACGAGCACCGACCTTTCAT 59.107 50.000 5.53 0.00 41.76 2.57
247 248 0.242825 CTACGAGCACCGACCTTTCA 59.757 55.000 5.53 0.00 41.76 2.69
248 249 0.243095 ACTACGAGCACCGACCTTTC 59.757 55.000 5.53 0.00 41.76 2.62
249 250 0.243095 GACTACGAGCACCGACCTTT 59.757 55.000 5.53 0.00 41.76 3.11
250 251 1.593296 GGACTACGAGCACCGACCTT 61.593 60.000 5.53 0.00 41.76 3.50
251 252 2.045131 GGACTACGAGCACCGACCT 61.045 63.158 5.53 0.00 41.76 3.85
252 253 2.267681 CTGGACTACGAGCACCGACC 62.268 65.000 5.53 4.41 41.76 4.79
253 254 1.136984 CTGGACTACGAGCACCGAC 59.863 63.158 5.53 0.00 41.76 4.79
254 255 0.393944 ATCTGGACTACGAGCACCGA 60.394 55.000 5.53 0.00 41.76 4.69
255 256 1.306148 TATCTGGACTACGAGCACCG 58.694 55.000 0.00 0.00 45.44 4.94
256 257 3.643763 CAATATCTGGACTACGAGCACC 58.356 50.000 0.00 0.00 0.00 5.01
257 258 3.053455 GCAATATCTGGACTACGAGCAC 58.947 50.000 0.00 0.00 0.00 4.40
258 259 2.035961 GGCAATATCTGGACTACGAGCA 59.964 50.000 0.00 0.00 0.00 4.26
259 260 2.297597 AGGCAATATCTGGACTACGAGC 59.702 50.000 0.00 0.00 0.00 5.03
260 261 3.057174 GGAGGCAATATCTGGACTACGAG 60.057 52.174 0.00 0.00 0.00 4.18
261 262 2.891580 GGAGGCAATATCTGGACTACGA 59.108 50.000 0.00 0.00 0.00 3.43
262 263 2.894126 AGGAGGCAATATCTGGACTACG 59.106 50.000 0.00 0.00 0.00 3.51
263 264 5.717178 TCATAGGAGGCAATATCTGGACTAC 59.283 44.000 0.00 0.00 0.00 2.73
264 265 5.903923 TCATAGGAGGCAATATCTGGACTA 58.096 41.667 0.00 0.00 0.00 2.59
265 266 4.756564 TCATAGGAGGCAATATCTGGACT 58.243 43.478 0.00 0.00 0.00 3.85
266 267 5.426504 CATCATAGGAGGCAATATCTGGAC 58.573 45.833 0.00 0.00 0.00 4.02
267 268 5.688814 CATCATAGGAGGCAATATCTGGA 57.311 43.478 0.00 0.00 0.00 3.86
296 297 0.606604 TCCACTCTCTAACCGGCAAC 59.393 55.000 0.00 0.00 0.00 4.17
297 298 1.275291 CTTCCACTCTCTAACCGGCAA 59.725 52.381 0.00 0.00 0.00 4.52
298 299 0.895530 CTTCCACTCTCTAACCGGCA 59.104 55.000 0.00 0.00 0.00 5.69
299 300 0.175989 CCTTCCACTCTCTAACCGGC 59.824 60.000 0.00 0.00 0.00 6.13
300 301 1.751924 CTCCTTCCACTCTCTAACCGG 59.248 57.143 0.00 0.00 0.00 5.28
301 302 1.751924 CCTCCTTCCACTCTCTAACCG 59.248 57.143 0.00 0.00 0.00 4.44
302 303 2.112190 CCCTCCTTCCACTCTCTAACC 58.888 57.143 0.00 0.00 0.00 2.85
303 304 2.112190 CCCCTCCTTCCACTCTCTAAC 58.888 57.143 0.00 0.00 0.00 2.34
304 305 2.008400 TCCCCTCCTTCCACTCTCTAA 58.992 52.381 0.00 0.00 0.00 2.10
305 306 1.571457 CTCCCCTCCTTCCACTCTCTA 59.429 57.143 0.00 0.00 0.00 2.43
306 307 0.338120 CTCCCCTCCTTCCACTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
307 308 0.336737 TCTCCCCTCCTTCCACTCTC 59.663 60.000 0.00 0.00 0.00 3.20
308 309 0.338120 CTCTCCCCTCCTTCCACTCT 59.662 60.000 0.00 0.00 0.00 3.24
309 310 0.041982 ACTCTCCCCTCCTTCCACTC 59.958 60.000 0.00 0.00 0.00 3.51
310 311 0.252467 CACTCTCCCCTCCTTCCACT 60.252 60.000 0.00 0.00 0.00 4.00
311 312 0.252284 TCACTCTCCCCTCCTTCCAC 60.252 60.000 0.00 0.00 0.00 4.02
312 313 0.041833 CTCACTCTCCCCTCCTTCCA 59.958 60.000 0.00 0.00 0.00 3.53
313 314 0.041982 ACTCACTCTCCCCTCCTTCC 59.958 60.000 0.00 0.00 0.00 3.46
314 315 1.190643 CACTCACTCTCCCCTCCTTC 58.809 60.000 0.00 0.00 0.00 3.46
315 316 0.252467 CCACTCACTCTCCCCTCCTT 60.252 60.000 0.00 0.00 0.00 3.36
316 317 1.390125 CCACTCACTCTCCCCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
317 318 1.079438 ACCACTCACTCTCCCCTCC 59.921 63.158 0.00 0.00 0.00 4.30
318 319 0.251832 TCACCACTCACTCTCCCCTC 60.252 60.000 0.00 0.00 0.00 4.30
319 320 0.252012 CTCACCACTCACTCTCCCCT 60.252 60.000 0.00 0.00 0.00 4.79
320 321 0.251832 TCTCACCACTCACTCTCCCC 60.252 60.000 0.00 0.00 0.00 4.81
321 322 1.633774 TTCTCACCACTCACTCTCCC 58.366 55.000 0.00 0.00 0.00 4.30
322 323 2.028567 CCTTTCTCACCACTCACTCTCC 60.029 54.545 0.00 0.00 0.00 3.71
323 324 2.028567 CCCTTTCTCACCACTCACTCTC 60.029 54.545 0.00 0.00 0.00 3.20
324 325 1.974236 CCCTTTCTCACCACTCACTCT 59.026 52.381 0.00 0.00 0.00 3.24
325 326 1.002544 CCCCTTTCTCACCACTCACTC 59.997 57.143 0.00 0.00 0.00 3.51
326 327 1.059913 CCCCTTTCTCACCACTCACT 58.940 55.000 0.00 0.00 0.00 3.41
327 328 0.765510 ACCCCTTTCTCACCACTCAC 59.234 55.000 0.00 0.00 0.00 3.51
328 329 0.764890 CACCCCTTTCTCACCACTCA 59.235 55.000 0.00 0.00 0.00 3.41
329 330 1.002544 CTCACCCCTTTCTCACCACTC 59.997 57.143 0.00 0.00 0.00 3.51
330 331 1.059913 CTCACCCCTTTCTCACCACT 58.940 55.000 0.00 0.00 0.00 4.00
331 332 0.036875 CCTCACCCCTTTCTCACCAC 59.963 60.000 0.00 0.00 0.00 4.16
332 333 1.133809 CCCTCACCCCTTTCTCACCA 61.134 60.000 0.00 0.00 0.00 4.17
333 334 1.685820 CCCTCACCCCTTTCTCACC 59.314 63.158 0.00 0.00 0.00 4.02
334 335 0.840722 TCCCCTCACCCCTTTCTCAC 60.841 60.000 0.00 0.00 0.00 3.51
335 336 0.121197 ATCCCCTCACCCCTTTCTCA 59.879 55.000 0.00 0.00 0.00 3.27
336 337 1.299939 AATCCCCTCACCCCTTTCTC 58.700 55.000 0.00 0.00 0.00 2.87
337 338 1.773541 AAATCCCCTCACCCCTTTCT 58.226 50.000 0.00 0.00 0.00 2.52
338 339 3.566351 CATAAATCCCCTCACCCCTTTC 58.434 50.000 0.00 0.00 0.00 2.62
339 340 2.247372 CCATAAATCCCCTCACCCCTTT 59.753 50.000 0.00 0.00 0.00 3.11
340 341 1.859574 CCATAAATCCCCTCACCCCTT 59.140 52.381 0.00 0.00 0.00 3.95
341 342 1.534338 CCATAAATCCCCTCACCCCT 58.466 55.000 0.00 0.00 0.00 4.79
342 343 0.178961 GCCATAAATCCCCTCACCCC 60.179 60.000 0.00 0.00 0.00 4.95
343 344 0.555769 TGCCATAAATCCCCTCACCC 59.444 55.000 0.00 0.00 0.00 4.61
344 345 1.692411 GTGCCATAAATCCCCTCACC 58.308 55.000 0.00 0.00 0.00 4.02
345 346 1.692411 GGTGCCATAAATCCCCTCAC 58.308 55.000 0.00 0.00 0.00 3.51
346 347 0.182537 CGGTGCCATAAATCCCCTCA 59.817 55.000 0.00 0.00 0.00 3.86
347 348 1.172812 GCGGTGCCATAAATCCCCTC 61.173 60.000 0.00 0.00 0.00 4.30
348 349 1.152756 GCGGTGCCATAAATCCCCT 60.153 57.895 0.00 0.00 0.00 4.79
349 350 3.443588 GCGGTGCCATAAATCCCC 58.556 61.111 0.00 0.00 0.00 4.81
360 361 4.021925 ACTCTCCCAAGGCGGTGC 62.022 66.667 0.00 0.00 0.00 5.01
361 362 2.046892 CACTCTCCCAAGGCGGTG 60.047 66.667 0.00 0.00 0.00 4.94
362 363 2.203788 TCACTCTCCCAAGGCGGT 60.204 61.111 0.00 0.00 0.00 5.68
363 364 2.286523 ACTCACTCTCCCAAGGCGG 61.287 63.158 0.00 0.00 0.00 6.13
364 365 1.079543 CACTCACTCTCCCAAGGCG 60.080 63.158 0.00 0.00 0.00 5.52
365 366 0.398318 AACACTCACTCTCCCAAGGC 59.602 55.000 0.00 0.00 0.00 4.35
366 367 1.271054 CCAACACTCACTCTCCCAAGG 60.271 57.143 0.00 0.00 0.00 3.61
367 368 1.417890 ACCAACACTCACTCTCCCAAG 59.582 52.381 0.00 0.00 0.00 3.61
368 369 1.140852 CACCAACACTCACTCTCCCAA 59.859 52.381 0.00 0.00 0.00 4.12
369 370 0.758734 CACCAACACTCACTCTCCCA 59.241 55.000 0.00 0.00 0.00 4.37
370 371 0.035458 CCACCAACACTCACTCTCCC 59.965 60.000 0.00 0.00 0.00 4.30
371 372 1.001406 CTCCACCAACACTCACTCTCC 59.999 57.143 0.00 0.00 0.00 3.71
372 373 1.001406 CCTCCACCAACACTCACTCTC 59.999 57.143 0.00 0.00 0.00 3.20
373 374 1.051812 CCTCCACCAACACTCACTCT 58.948 55.000 0.00 0.00 0.00 3.24
374 375 0.035458 CCCTCCACCAACACTCACTC 59.965 60.000 0.00 0.00 0.00 3.51
375 376 1.418908 CCCCTCCACCAACACTCACT 61.419 60.000 0.00 0.00 0.00 3.41
376 377 1.073199 CCCCTCCACCAACACTCAC 59.927 63.158 0.00 0.00 0.00 3.51
377 378 1.074090 TCCCCTCCACCAACACTCA 60.074 57.895 0.00 0.00 0.00 3.41
378 379 0.836400 TCTCCCCTCCACCAACACTC 60.836 60.000 0.00 0.00 0.00 3.51
379 380 0.838122 CTCTCCCCTCCACCAACACT 60.838 60.000 0.00 0.00 0.00 3.55
380 381 1.128188 ACTCTCCCCTCCACCAACAC 61.128 60.000 0.00 0.00 0.00 3.32
381 382 1.127567 CACTCTCCCCTCCACCAACA 61.128 60.000 0.00 0.00 0.00 3.33
382 383 1.679898 CACTCTCCCCTCCACCAAC 59.320 63.158 0.00 0.00 0.00 3.77
383 384 1.538876 CCACTCTCCCCTCCACCAA 60.539 63.158 0.00 0.00 0.00 3.67
384 385 2.043527 TTCCACTCTCCCCTCCACCA 62.044 60.000 0.00 0.00 0.00 4.17
385 386 1.229529 TTCCACTCTCCCCTCCACC 60.230 63.158 0.00 0.00 0.00 4.61
386 387 1.268283 CCTTCCACTCTCCCCTCCAC 61.268 65.000 0.00 0.00 0.00 4.02
387 388 1.081092 CCTTCCACTCTCCCCTCCA 59.919 63.158 0.00 0.00 0.00 3.86
388 389 0.689412 CTCCTTCCACTCTCCCCTCC 60.689 65.000 0.00 0.00 0.00 4.30
389 390 0.689412 CCTCCTTCCACTCTCCCCTC 60.689 65.000 0.00 0.00 0.00 4.30
390 391 1.394151 CCTCCTTCCACTCTCCCCT 59.606 63.158 0.00 0.00 0.00 4.79
391 392 1.690985 CCCTCCTTCCACTCTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
392 393 0.252742 TTCCCTCCTTCCACTCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
393 394 1.199615 CTTCCCTCCTTCCACTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
394 395 0.539518 GCTTCCCTCCTTCCACTCTC 59.460 60.000 0.00 0.00 0.00 3.20
395 396 1.261238 CGCTTCCCTCCTTCCACTCT 61.261 60.000 0.00 0.00 0.00 3.24
396 397 1.219393 CGCTTCCCTCCTTCCACTC 59.781 63.158 0.00 0.00 0.00 3.51
397 398 1.536662 ACGCTTCCCTCCTTCCACT 60.537 57.895 0.00 0.00 0.00 4.00
398 399 1.376037 CACGCTTCCCTCCTTCCAC 60.376 63.158 0.00 0.00 0.00 4.02
399 400 0.543410 TACACGCTTCCCTCCTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
400 401 0.611714 TTACACGCTTCCCTCCTTCC 59.388 55.000 0.00 0.00 0.00 3.46
401 402 2.347731 CTTTACACGCTTCCCTCCTTC 58.652 52.381 0.00 0.00 0.00 3.46
402 403 1.610886 GCTTTACACGCTTCCCTCCTT 60.611 52.381 0.00 0.00 0.00 3.36
403 404 0.036294 GCTTTACACGCTTCCCTCCT 60.036 55.000 0.00 0.00 0.00 3.69
404 405 1.025113 GGCTTTACACGCTTCCCTCC 61.025 60.000 0.00 0.00 0.00 4.30
405 406 1.359459 CGGCTTTACACGCTTCCCTC 61.359 60.000 0.00 0.00 0.00 4.30
406 407 1.375523 CGGCTTTACACGCTTCCCT 60.376 57.895 0.00 0.00 0.00 4.20
407 408 3.174788 CGGCTTTACACGCTTCCC 58.825 61.111 0.00 0.00 0.00 3.97
415 416 0.035915 TGGCTACATGCGGCTTTACA 60.036 50.000 0.00 0.00 44.05 2.41
418 419 0.680921 ATGTGGCTACATGCGGCTTT 60.681 50.000 15.67 0.00 45.54 3.51
419 420 1.077501 ATGTGGCTACATGCGGCTT 60.078 52.632 15.67 0.00 45.54 4.35
437 438 3.195002 GCGATGCAAGGTAGCGCA 61.195 61.111 11.47 0.00 46.19 6.09
439 440 2.580470 CGAGCGATGCAAGGTAGCG 61.580 63.158 0.00 0.00 37.31 4.26
440 441 2.240500 CCGAGCGATGCAAGGTAGC 61.241 63.158 0.00 0.00 0.00 3.58
441 442 1.592669 CCCGAGCGATGCAAGGTAG 60.593 63.158 0.00 0.00 0.00 3.18
453 454 3.386237 ACTGAGTCAGGCCCGAGC 61.386 66.667 23.79 0.00 35.51 5.03
459 460 0.681733 TTGTCTCCACTGAGTCAGGC 59.318 55.000 23.79 7.44 37.82 4.85
460 461 1.001406 GGTTGTCTCCACTGAGTCAGG 59.999 57.143 23.79 12.48 37.82 3.86
464 465 1.633774 ATCGGTTGTCTCCACTGAGT 58.366 50.000 0.00 0.00 39.75 3.41
465 466 2.611518 GAATCGGTTGTCTCCACTGAG 58.388 52.381 0.00 0.00 40.17 3.35
469 470 2.074547 TTCGAATCGGTTGTCTCCAC 57.925 50.000 1.76 0.00 0.00 4.02
474 475 4.455124 CTGAAACTTTCGAATCGGTTGTC 58.545 43.478 1.76 6.56 0.00 3.18
488 489 1.544314 GGCCTGACTCTGCTGAAACTT 60.544 52.381 0.00 0.00 0.00 2.66
489 490 0.036022 GGCCTGACTCTGCTGAAACT 59.964 55.000 0.00 0.00 0.00 2.66
490 491 0.957888 GGGCCTGACTCTGCTGAAAC 60.958 60.000 0.84 0.00 0.00 2.78
493 494 1.203441 ATTGGGCCTGACTCTGCTGA 61.203 55.000 4.53 0.00 0.00 4.26
502 503 3.730215 TTAAAGCACTATTGGGCCTGA 57.270 42.857 4.53 0.00 0.00 3.86
506 507 5.337578 TGGAATTTAAAGCACTATTGGGC 57.662 39.130 0.00 0.00 0.00 5.36
512 513 4.644685 GCCTCCATGGAATTTAAAGCACTA 59.355 41.667 17.00 0.00 38.35 2.74
513 514 3.448660 GCCTCCATGGAATTTAAAGCACT 59.551 43.478 17.00 0.00 38.35 4.40
546 547 0.040058 TTTGGATGTCTGGCCTGCAT 59.960 50.000 15.74 15.74 0.00 3.96
557 558 6.357579 TGCAATTTTCACCTATTTGGATGT 57.642 33.333 0.00 0.00 39.71 3.06
567 568 6.600882 ATCTCTTTGATGCAATTTTCACCT 57.399 33.333 0.00 0.00 33.43 4.00
578 579 7.081526 ACACTTGTGAATATCTCTTTGATGC 57.918 36.000 7.83 0.00 36.65 3.91
611 613 0.992072 CACGTGGTCTCATTGCGTAG 59.008 55.000 7.95 0.00 34.27 3.51
615 617 1.225855 TGAACACGTGGTCTCATTGC 58.774 50.000 31.99 7.21 31.73 3.56
659 664 5.239087 GGCACCCGAATTCCGTTAATATTAA 59.761 40.000 3.71 3.71 36.31 1.40
662 667 3.143728 GGCACCCGAATTCCGTTAATAT 58.856 45.455 0.00 0.00 36.31 1.28
671 1175 1.749258 GGACCTGGCACCCGAATTC 60.749 63.158 0.00 0.00 0.00 2.17
738 1243 5.060940 GCTTTCGGCAAATGTTCATCTAAAC 59.939 40.000 0.00 0.00 41.35 2.01
764 1295 2.295909 TGCTCGGCTGCTTTTTGTTAAT 59.704 40.909 0.00 0.00 0.00 1.40
766 1297 1.266718 CTGCTCGGCTGCTTTTTGTTA 59.733 47.619 0.00 0.00 0.00 2.41
796 1327 8.375608 AGATAGATATTTTCGATGCATATGCC 57.624 34.615 24.54 9.44 41.18 4.40
834 1365 0.037232 GAGTCCCCTCCAAGTTCGTG 60.037 60.000 0.00 0.00 0.00 4.35
861 1392 5.178797 ACATCATGCTTAGTTACCACACTC 58.821 41.667 0.00 0.00 0.00 3.51
906 1438 1.410850 ATCGATCGCCCCAATGACCT 61.411 55.000 11.09 0.00 0.00 3.85
917 1449 1.570813 TTGTGTGATGGATCGATCGC 58.429 50.000 20.63 20.63 34.08 4.58
1042 1580 2.281276 GGCGAGGTTCCACCGTTT 60.281 61.111 0.00 0.00 44.90 3.60
1152 1690 2.582202 GATCAATGCGTGCACCACCG 62.582 60.000 12.15 0.00 0.00 4.94
1177 1715 3.938963 AGGCACGTACAAAATGAATCGAT 59.061 39.130 0.00 0.00 0.00 3.59
1198 1736 0.531532 CTCCACGATGGCAAGCCTAG 60.532 60.000 12.96 6.11 37.47 3.02
1403 1941 1.338107 TGTTGACGAGGATGTGGAGT 58.662 50.000 0.00 0.00 0.00 3.85
1904 2451 1.450312 GGCTGCTATTGTGCGTCCT 60.450 57.895 0.00 0.00 35.36 3.85
1936 2483 1.128692 GCTTCTCACGGTTACATGTGC 59.871 52.381 9.11 0.81 36.06 4.57
1957 2504 0.841961 AGCTTCTAGCCATGGATGCA 59.158 50.000 18.40 0.00 43.77 3.96
2152 2702 4.431416 TGACAAGCTAAGTTTTCTCCCA 57.569 40.909 0.00 0.00 0.00 4.37
2153 2703 4.156739 CCATGACAAGCTAAGTTTTCTCCC 59.843 45.833 0.00 0.00 0.00 4.30
2154 2704 4.156739 CCCATGACAAGCTAAGTTTTCTCC 59.843 45.833 0.00 0.00 0.00 3.71
2155 2705 4.379918 GCCCATGACAAGCTAAGTTTTCTC 60.380 45.833 0.00 0.00 0.00 2.87
2156 2706 3.507622 GCCCATGACAAGCTAAGTTTTCT 59.492 43.478 0.00 0.00 0.00 2.52
2157 2707 3.255642 TGCCCATGACAAGCTAAGTTTTC 59.744 43.478 0.00 0.00 0.00 2.29
2158 2708 3.230134 TGCCCATGACAAGCTAAGTTTT 58.770 40.909 0.00 0.00 0.00 2.43
2159 2709 2.875296 TGCCCATGACAAGCTAAGTTT 58.125 42.857 0.00 0.00 0.00 2.66
2160 2710 2.584835 TGCCCATGACAAGCTAAGTT 57.415 45.000 0.00 0.00 0.00 2.66
2161 2711 2.814805 ATGCCCATGACAAGCTAAGT 57.185 45.000 0.00 0.00 0.00 2.24
2162 2712 4.139786 ACATATGCCCATGACAAGCTAAG 58.860 43.478 1.58 0.00 0.00 2.18
2163 2713 4.136796 GACATATGCCCATGACAAGCTAA 58.863 43.478 1.58 0.00 0.00 3.09
2164 2714 3.496692 GGACATATGCCCATGACAAGCTA 60.497 47.826 2.71 0.00 0.00 3.32
2165 2715 2.579873 GACATATGCCCATGACAAGCT 58.420 47.619 1.58 0.00 0.00 3.74
2166 2716 1.610522 GGACATATGCCCATGACAAGC 59.389 52.381 2.71 0.00 0.00 4.01
2167 2717 2.934887 TGGACATATGCCCATGACAAG 58.065 47.619 6.66 0.00 0.00 3.16
2168 2718 3.378861 TTGGACATATGCCCATGACAA 57.621 42.857 11.94 0.00 31.66 3.18
2171 2721 3.706183 TGTTTTGGACATATGCCCATGA 58.294 40.909 11.94 1.20 32.00 3.07
2333 2884 0.664767 GAGGAGATACACGCGGCATC 60.665 60.000 12.47 9.89 0.00 3.91
2341 2892 3.197766 TGTGTTCATGGGAGGAGATACAC 59.802 47.826 0.00 0.00 36.19 2.90
2641 3193 1.070134 GTGCTGTACACCAAGTCAGGA 59.930 52.381 0.00 0.00 44.02 3.86
2656 3208 2.196749 GACTACCATCATCGTGTGCTG 58.803 52.381 0.00 0.00 0.00 4.41
2767 3319 9.248291 AGTAAACTAGAATTTGCAAATGTGTTG 57.752 29.630 24.74 15.60 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.