AutoCloner

Multiple sequence alignment - TraesCS4D01G133200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G133200	chr4D	100.000	2607	0	0	1	2607	119808316	119805710	0.000000e+00	4815.0
1	TraesCS4D01G133200	chr4D	97.254	692	19	0	1	692	8009946	8010637	0.000000e+00	1173.0
2	TraesCS4D01G133200	chr4D	96.353	713	25	1	1	712	181135312	181136024	0.000000e+00	1171.0
3	TraesCS4D01G133200	chr4D	96.000	50	1	1	13	62	119808145	119808097	2.150000e-11	80.5
4	TraesCS4D01G133200	chr4B	92.012	1014	38	16	713	1708	182271018	182270030	0.000000e+00	1384.0
5	TraesCS4D01G133200	chr4B	91.823	746	33	16	1878	2607	182261146	182260413	0.000000e+00	1014.0
6	TraesCS4D01G133200	chr4B	95.402	87	4	0	1811	1897	182261254	182261168	3.500000e-29	139.0
7	TraesCS4D01G133200	chr4A	91.851	994	46	8	713	1689	450766890	450765915	0.000000e+00	1354.0
8	TraesCS4D01G133200	chr4A	89.820	835	50	19	1796	2607	450765826	450765004	0.000000e+00	1038.0
9	TraesCS4D01G133200	chr4A	91.429	70	6	0	2460	2529	667005050	667005119	2.140000e-16	97.1
10	TraesCS4D01G133200	chr3D	97.645	722	15	2	1	720	80566227	80565506	0.000000e+00	1238.0
11	TraesCS4D01G133200	chr3D	96.000	50	1	1	13	62	80566056	80566008	2.150000e-11	80.5
12	TraesCS4D01G133200	chr2D	97.472	712	17	1	1	711	423302922	423303633	0.000000e+00	1214.0
13	TraesCS4D01G133200	chr2D	96.208	712	27	0	1	712	103071699	103072410	0.000000e+00	1166.0
14	TraesCS4D01G133200	chr2D	93.557	714	16	2	1	714	550644141	550644824	0.000000e+00	1037.0
15	TraesCS4D01G133200	chr2D	86.585	82	9	2	141	220	103071679	103071760	3.570000e-14	89.8
16	TraesCS4D01G133200	chr1D	94.678	714	29	3	1	712	394955388	394954682	0.000000e+00	1099.0
17	TraesCS4D01G133200	chr1D	86.585	82	9	2	141	220	394955408	394955327	3.570000e-14	89.8
18	TraesCS4D01G133200	chr5A	78.131	535	91	22	2044	2569	337941135	337941652	1.510000e-82	316.0
19	TraesCS4D01G133200	chr5B	78.067	538	90	24	2044	2575	288178287	288177772	5.420000e-82	315.0
20	TraesCS4D01G133200	chr5D	83.951	324	49	3	2254	2575	254586679	254587001	9.060000e-80	307.0
21	TraesCS4D01G133200	chr3A	93.056	72	5	0	2458	2529	625330514	625330585	3.550000e-19	106.0
22	TraesCS4D01G133200	chr7A	95.000	60	3	0	2458	2517	602227128	602227187	7.680000e-16	95.3
23	TraesCS4D01G133200	chr2B	90.278	72	6	1	2458	2529	699179954	699180024	2.760000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G133200	chr4D	119805710	119808316	2606	True	2447.75	4815	98.0000	1	2607	2	chr4D.!!$R1	2606
1	TraesCS4D01G133200	chr4D	8009946	8010637	691	False	1173.00	1173	97.2540	1	692	1	chr4D.!!$F1	691
2	TraesCS4D01G133200	chr4D	181135312	181136024	712	False	1171.00	1171	96.3530	1	712	1	chr4D.!!$F2	711
3	TraesCS4D01G133200	chr4B	182270030	182271018	988	True	1384.00	1384	92.0120	713	1708	1	chr4B.!!$R1	995
4	TraesCS4D01G133200	chr4B	182260413	182261254	841	True	576.50	1014	93.6125	1811	2607	2	chr4B.!!$R2	796
5	TraesCS4D01G133200	chr4A	450765004	450766890	1886	True	1196.00	1354	90.8355	713	2607	2	chr4A.!!$R1	1894
6	TraesCS4D01G133200	chr3D	80565506	80566227	721	True	659.25	1238	96.8225	1	720	2	chr3D.!!$R1	719
7	TraesCS4D01G133200	chr2D	423302922	423303633	711	False	1214.00	1214	97.4720	1	711	1	chr2D.!!$F1	710
8	TraesCS4D01G133200	chr2D	550644141	550644824	683	False	1037.00	1037	93.5570	1	714	1	chr2D.!!$F2	713
9	TraesCS4D01G133200	chr2D	103071679	103072410	731	False	627.90	1166	91.3965	1	712	2	chr2D.!!$F3	711
10	TraesCS4D01G133200	chr1D	394954682	394955408	726	True	594.40	1099	90.6315	1	712	2	chr1D.!!$R1	711
11	TraesCS4D01G133200	chr5A	337941135	337941652	517	False	316.00	316	78.1310	2044	2569	1	chr5A.!!$F1	525
12	TraesCS4D01G133200	chr5B	288177772	288178287	515	True	315.00	315	78.0670	2044	2575	1	chr5B.!!$R1	531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
827	881	0.721483	GCACGCACGCAGTTAACTTC	60.721	55.0	5.07	0.0	41.61	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2038	2214	0.235144	CCTCGTACTCGTAGCCATCG	59.765	60.0	0.0	0.0	38.33	3.84	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
541	592	2.263077	CGTGAGGAATGAAGGAAGTCG	58.737	52.381	0.00	0.00	0.00	4.18
624	675	2.210116	ACTGTCTCGCATGAAAACGTT	58.790	42.857	0.00	0.00	0.00	3.99
813	867	2.359230	AAAGGAGGAGCTGCACGC	60.359	61.111	8.35	0.00	39.57	5.34
827	881	0.721483	GCACGCACGCAGTTAACTTC	60.721	55.000	5.07	0.00	41.61	3.01
899	953	3.446516	AGGAATTTCAGAAGATGCTTGCC	59.553	43.478	0.00	0.00	0.00	4.52
964	1018	4.251103	TGGACAGGATGAACTAGCTAGA	57.749	45.455	27.45	5.35	39.69	2.43
965	1019	3.954904	TGGACAGGATGAACTAGCTAGAC	59.045	47.826	27.45	18.97	39.69	2.59
966	1020	3.954904	GGACAGGATGAACTAGCTAGACA	59.045	47.826	27.45	23.31	39.69	3.41
967	1021	4.037446	GGACAGGATGAACTAGCTAGACAG	59.963	50.000	27.45	14.97	39.69	3.51
968	1022	4.605183	ACAGGATGAACTAGCTAGACAGT	58.395	43.478	27.45	15.50	39.69	3.55
969	1023	5.756918	ACAGGATGAACTAGCTAGACAGTA	58.243	41.667	27.45	8.77	39.69	2.74
970	1024	6.369629	ACAGGATGAACTAGCTAGACAGTAT	58.630	40.000	27.45	12.81	39.69	2.12
971	1025	6.836527	ACAGGATGAACTAGCTAGACAGTATT	59.163	38.462	27.45	9.68	39.69	1.89
1023	1085	1.003696	GGAGGTGGAAACAAGGAGAGG	59.996	57.143	0.00	0.00	46.06	3.69
1036	1098	1.668101	GGAGAGGGGTAGCGACACAG	61.668	65.000	0.44	0.00	0.00	3.66
1113	1175	2.511452	CCCTGCATACCCTCCTCCG	61.511	68.421	0.00	0.00	0.00	4.63
1191	1253	2.148611	TGGCTATCCATCAGCAGGG	58.851	57.895	0.00	0.00	40.95	4.45
1203	1265	4.519437	GCAGGGGCGTACGGGTAC	62.519	72.222	18.39	0.00	0.00	3.34
1313	1392	2.094286	GGCTACTCGATCCATGGATCTG	60.094	54.545	39.11	33.24	46.36	2.90
1324	1403	2.791655	CATGGATCTGTCATGGATGGG	58.208	52.381	0.00	0.00	38.55	4.00
1330	1409	0.830648	CTGTCATGGATGGGTACGGT	59.169	55.000	0.00	0.00	0.00	4.83
1477	1556	1.202806	CCTGCGGGTTACCATCATCAT	60.203	52.381	2.29	0.00	36.13	2.45
1519	1598	0.249741	ATGGACGCTACGGTTATGGC	60.250	55.000	0.00	0.00	0.00	4.40
1632	1720	4.938080	TCTTCCAAGTTGATCTATCGAGC	58.062	43.478	3.87	0.00	0.00	5.03
1708	1796	5.549228	TCCATCCATATCCCATATCCATAGC	59.451	44.000	0.00	0.00	0.00	2.97
1709	1797	5.311385	CCATCCATATCCCATATCCATAGCA	59.689	44.000	0.00	0.00	0.00	3.49
1710	1798	6.011893	CCATCCATATCCCATATCCATAGCAT	60.012	42.308	0.00	0.00	0.00	3.79
1711	1799	7.183293	CCATCCATATCCCATATCCATAGCATA	59.817	40.741	0.00	0.00	0.00	3.14
1712	1800	8.779031	CATCCATATCCCATATCCATAGCATAT	58.221	37.037	0.00	0.00	0.00	1.78
1754	1842	1.882682	TAAGTTCGTTCTGTGCGCGC	61.883	55.000	27.26	27.26	0.00	6.86
1764	1852	2.911280	GTGCGCGCACGTATAGTC	59.089	61.111	43.80	22.52	42.83	2.59
1765	1853	1.585521	GTGCGCGCACGTATAGTCT	60.586	57.895	43.80	0.00	42.83	3.24
1766	1854	0.316442	GTGCGCGCACGTATAGTCTA	60.316	55.000	43.80	12.23	42.83	2.59
1767	1855	0.316442	TGCGCGCACGTATAGTCTAC	60.316	55.000	33.09	0.00	42.83	2.59
1768	1856	1.319010	GCGCGCACGTATAGTCTACG	61.319	60.000	29.10	6.54	45.44	3.51
1780	1868	7.762241	CGTATAGTCTACGTACATGTGAATG	57.238	40.000	9.11	0.00	36.31	2.67
1786	1874	2.602878	ACGTACATGTGAATGTCGGTC	58.397	47.619	9.11	0.00	36.08	4.79
1792	1880	1.075979	TGTGAATGTCGGTCGCGATG	61.076	55.000	14.06	8.75	0.00	3.84
1793	1881	0.800683	GTGAATGTCGGTCGCGATGA	60.801	55.000	14.06	11.38	0.00	2.92
1794	1882	0.109039	TGAATGTCGGTCGCGATGAA	60.109	50.000	14.06	5.49	0.00	2.57
1855	1968	1.024579	GCAATCCACACCCTGTACGG	61.025	60.000	0.00	0.00	0.00	4.02
1868	1981	2.223433	CCTGTACGGTCGATCTGTAACC	60.223	54.545	0.00	0.00	39.29	2.85
1897	2010	4.630940	CCAATTTAAACATGCACCCACATC	59.369	41.667	0.00	0.00	0.00	3.06
1899	2012	6.350864	CCAATTTAAACATGCACCCACATCTA	60.351	38.462	0.00	0.00	0.00	1.98
1900	2013	7.267128	CAATTTAAACATGCACCCACATCTAT	58.733	34.615	0.00	0.00	0.00	1.98
1902	2015	3.939740	AACATGCACCCACATCTATCT	57.060	42.857	0.00	0.00	0.00	1.98
1903	2016	5.372343	AAACATGCACCCACATCTATCTA	57.628	39.130	0.00	0.00	0.00	1.98
1904	2017	5.573380	AACATGCACCCACATCTATCTAT	57.427	39.130	0.00	0.00	0.00	1.98
1931	2088	1.651987	AATACGAACGTGCTCCCATG	58.348	50.000	10.14	0.00	0.00	3.66
1966	2124	7.025963	GCTTTCAGACAATTTCGATCTTGATT	58.974	34.615	12.80	0.60	0.00	2.57
1973	2135	8.669243	AGACAATTTCGATCTTGATTAGTTTCC	58.331	33.333	12.80	0.00	0.00	3.13
2038	2214	1.369689	CAGCAGCAGCAACGTTGAC	60.370	57.895	31.62	21.18	45.49	3.18
2071	2247	5.681982	CGAGTACGAGGAAGAATACATCAAC	59.318	44.000	0.00	0.00	42.66	3.18
2180	2360	7.312888	GGTACGTACTACAATAATTGCTACG	57.687	40.000	24.07	0.00	37.62	3.51
2194	2377	6.604735	AATTGCTACGTACCTTCATCAATC	57.395	37.500	0.00	0.00	0.00	2.67
2202	2394	2.898705	ACCTTCATCAATCGAGCTGAC	58.101	47.619	0.00	0.00	0.00	3.51
2204	2396	2.864946	CCTTCATCAATCGAGCTGACTG	59.135	50.000	0.00	0.00	0.00	3.51
2207	2399	4.397481	TCATCAATCGAGCTGACTGATT	57.603	40.909	7.18	2.06	40.50	2.57
2213	2411	6.239148	ATCAATCGAGCTGACTGATTAAGCTA	60.239	38.462	0.00	0.00	40.50	3.32
2214	2412	7.685398	ATCAATCGAGCTGACTGATTAAGCTAA	60.685	37.037	0.00	0.00	40.50	3.09
2238	2438	3.670627	GCTAGCACCATTACAAGCAACAC	60.671	47.826	10.63	0.00	0.00	3.32
2246	2450	6.748658	CACCATTACAAGCAACACTATTGATG	59.251	38.462	0.00	0.00	0.00	3.07

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
56	77	1.981495	AGCTTTCTACTGCCTGGTTCT	59.019	47.619	0.00	0.00	0.00	3.01
541	592	2.175931	TCTCCTGTCATCTCCTACCTCC	59.824	54.545	0.00	0.00	0.00	4.30
624	675	6.741109	TCTAGTACAATCGTGTGTTTTCTGA	58.259	36.000	0.00	0.00	38.82	3.27
700	753	9.675464	ATCTCGTTTTACATAGGGAAATGTTTA	57.325	29.630	0.00	0.00	40.52	2.01
744	797	5.557576	ATGCCAGAGATATTGCAAGAGTA	57.442	39.130	4.94	0.00	37.27	2.59
794	848	1.004560	CGTGCAGCTCCTCCTTTGA	60.005	57.895	0.00	0.00	0.00	2.69
813	867	1.068474	CGGAGGAAGTTAACTGCGTG	58.932	55.000	13.56	0.00	42.46	5.34
827	881	1.533625	TTGCTTTCAATGGACGGAGG	58.466	50.000	0.00	0.00	0.00	4.30
964	1018	2.557924	TGGTCGACGGTGTAAATACTGT	59.442	45.455	9.92	0.00	42.62	3.55
965	1019	3.176708	CTGGTCGACGGTGTAAATACTG	58.823	50.000	9.92	0.00	0.00	2.74
966	1020	2.821969	ACTGGTCGACGGTGTAAATACT	59.178	45.455	9.92	0.00	37.28	2.12
967	1021	3.174375	GACTGGTCGACGGTGTAAATAC	58.826	50.000	15.67	0.00	39.29	1.89
968	1022	3.492421	GACTGGTCGACGGTGTAAATA	57.508	47.619	15.67	0.00	39.29	1.40
969	1023	2.358939	GACTGGTCGACGGTGTAAAT	57.641	50.000	15.67	0.00	39.29	1.40
970	1024	3.871775	GACTGGTCGACGGTGTAAA	57.128	52.632	15.67	0.00	39.29	2.01
1023	1085	1.446272	GCTGTCTGTGTCGCTACCC	60.446	63.158	0.00	0.00	0.00	3.69
1113	1175	3.908081	CATCCATGCCCGGCTTGC	61.908	66.667	17.91	0.00	33.27	4.01
1203	1265	1.384502	TGGATAGCTGGAGGGTGGG	60.385	63.158	0.00	0.00	0.00	4.61
1313	1392	3.764237	ATAACCGTACCCATCCATGAC	57.236	47.619	0.00	0.00	0.00	3.06
1319	1398	6.854892	CGATCGATATTATAACCGTACCCATC	59.145	42.308	10.26	0.00	0.00	3.51
1324	1403	6.023435	TGCACGATCGATATTATAACCGTAC	58.977	40.000	24.34	0.00	0.00	3.67
1330	1409	6.090783	GTGACCTGCACGATCGATATTATAA	58.909	40.000	24.34	0.00	37.83	0.98
1477	1556	0.249953	TCTTGAACTTGCCGCCGTAA	60.250	50.000	0.00	0.00	0.00	3.18
1519	1598	1.213537	CTTGAACTTGCCGCCATGG	59.786	57.895	7.63	7.63	42.50	3.66
1626	1714	2.427453	ACATTAGTTCACTCCGCTCGAT	59.573	45.455	0.00	0.00	0.00	3.59
1632	1720	4.093408	CCAACATCACATTAGTTCACTCCG	59.907	45.833	0.00	0.00	0.00	4.63
1725	1813	8.912658	CGCACAGAACGAACTTATTATACATAT	58.087	33.333	0.00	0.00	0.00	1.78
1726	1814	7.096353	GCGCACAGAACGAACTTATTATACATA	60.096	37.037	0.30	0.00	0.00	2.29
1727	1815	6.292168	GCGCACAGAACGAACTTATTATACAT	60.292	38.462	0.30	0.00	0.00	2.29
1728	1816	5.005012	GCGCACAGAACGAACTTATTATACA	59.995	40.000	0.30	0.00	0.00	2.29
1729	1817	5.421203	GCGCACAGAACGAACTTATTATAC	58.579	41.667	0.30	0.00	0.00	1.47
1730	1818	4.205588	CGCGCACAGAACGAACTTATTATA	59.794	41.667	8.75	0.00	0.00	0.98
1731	1819	3.000078	CGCGCACAGAACGAACTTATTAT	60.000	43.478	8.75	0.00	0.00	1.28
1732	1820	2.343246	CGCGCACAGAACGAACTTATTA	59.657	45.455	8.75	0.00	0.00	0.98
1733	1821	1.126113	CGCGCACAGAACGAACTTATT	59.874	47.619	8.75	0.00	0.00	1.40
1734	1822	0.713883	CGCGCACAGAACGAACTTAT	59.286	50.000	8.75	0.00	0.00	1.73
1735	1823	1.882682	GCGCGCACAGAACGAACTTA	61.883	55.000	29.10	0.00	0.00	2.24
1736	1824	2.928361	CGCGCACAGAACGAACTT	59.072	55.556	8.75	0.00	0.00	2.66
1737	1825	3.702555	GCGCGCACAGAACGAACT	61.703	61.111	29.10	0.00	0.00	3.01
1738	1826	3.995669	TGCGCGCACAGAACGAAC	61.996	61.111	33.09	0.00	0.00	3.95
1748	1836	0.316442	GTAGACTATACGTGCGCGCA	60.316	55.000	33.09	33.09	42.83	6.09
1761	1849	4.438336	CCGACATTCACATGTACGTAGACT	60.438	45.833	0.00	0.00	44.22	3.24
1762	1850	3.789756	CCGACATTCACATGTACGTAGAC	59.210	47.826	0.00	0.00	44.22	2.59
1763	1851	3.441222	ACCGACATTCACATGTACGTAGA	59.559	43.478	0.00	0.00	44.22	2.59
1764	1852	3.766151	ACCGACATTCACATGTACGTAG	58.234	45.455	0.00	0.00	44.22	3.51
1765	1853	3.728566	CGACCGACATTCACATGTACGTA	60.729	47.826	0.00	0.00	44.22	3.57
1766	1854	2.602878	GACCGACATTCACATGTACGT	58.397	47.619	0.00	0.00	44.22	3.57
1767	1855	1.582052	CGACCGACATTCACATGTACG	59.418	52.381	0.00	0.00	44.22	3.67
1768	1856	1.323534	GCGACCGACATTCACATGTAC	59.676	52.381	0.00	0.00	44.22	2.90
1769	1857	1.635844	GCGACCGACATTCACATGTA	58.364	50.000	0.00	0.00	44.22	2.29
1771	1859	1.075979	TCGCGACCGACATTCACATG	61.076	55.000	3.71	0.00	38.82	3.21
1786	1874	1.913403	GACCAAGCAAATTTCATCGCG	59.087	47.619	0.00	0.00	0.00	5.87
1792	1880	1.418373	GTGCGGACCAAGCAAATTTC	58.582	50.000	0.00	0.00	46.97	2.17
1793	1881	0.318614	CGTGCGGACCAAGCAAATTT	60.319	50.000	0.00	0.00	46.97	1.82
1794	1882	1.285641	CGTGCGGACCAAGCAAATT	59.714	52.632	0.00	0.00	46.97	1.82
1848	1961	2.421073	TGGTTACAGATCGACCGTACAG	59.579	50.000	0.00	0.00	36.22	2.74
1855	1968	0.989890	GCACGTGGTTACAGATCGAC	59.010	55.000	18.88	0.00	0.00	4.20
1868	1981	3.055591	TGCATGTTTAAATTGGCACGTG	58.944	40.909	12.28	12.28	0.00	4.49
1902	2015	8.400947	GGGAGCACGTTCGTATTTATAGATATA	58.599	37.037	0.00	0.00	0.00	0.86
1903	2016	7.094075	TGGGAGCACGTTCGTATTTATAGATAT	60.094	37.037	0.00	0.00	0.00	1.63
1904	2017	6.207221	TGGGAGCACGTTCGTATTTATAGATA	59.793	38.462	0.00	0.00	0.00	1.98
1923	2071	2.771762	AGGAGAGGGCATGGGAGC	60.772	66.667	0.00	0.00	0.00	4.70
1931	2088	0.392327	GTCTGAAAGCAGGAGAGGGC	60.392	60.000	0.00	0.00	42.53	5.19
1966	2124	3.630312	GTGTGCACAAAGAAGGGAAACTA	59.370	43.478	23.59	0.00	0.00	2.24
2038	2214	0.235144	CCTCGTACTCGTAGCCATCG	59.765	60.000	0.00	0.00	38.33	3.84
2089	2265	1.900351	CCATCGGCAGGTGAAGAGA	59.100	57.895	0.00	0.00	0.00	3.10
2116	2292	2.378038	GCCTTGATTGGTCTGGCATTA	58.622	47.619	0.00	0.00	41.21	1.90
2166	2346	7.045416	TGATGAAGGTACGTAGCAATTATTGT	58.955	34.615	25.28	0.35	0.00	2.71
2168	2348	8.677148	ATTGATGAAGGTACGTAGCAATTATT	57.323	30.769	25.28	11.25	0.00	1.40
2171	2351	5.234329	CGATTGATGAAGGTACGTAGCAATT	59.766	40.000	25.28	12.67	0.00	2.32
2172	2352	4.745125	CGATTGATGAAGGTACGTAGCAAT	59.255	41.667	25.28	14.90	0.00	3.56
2173	2353	4.109766	CGATTGATGAAGGTACGTAGCAA	58.890	43.478	25.28	10.92	0.00	3.91
2174	2354	3.379057	TCGATTGATGAAGGTACGTAGCA	59.621	43.478	25.28	6.65	0.00	3.49
2175	2355	3.961182	TCGATTGATGAAGGTACGTAGC	58.039	45.455	16.85	16.85	0.00	3.58
2176	2356	3.975670	GCTCGATTGATGAAGGTACGTAG	59.024	47.826	0.00	0.00	0.00	3.51
2177	2357	3.630769	AGCTCGATTGATGAAGGTACGTA	59.369	43.478	0.00	0.00	0.00	3.57
2178	2358	2.427453	AGCTCGATTGATGAAGGTACGT	59.573	45.455	0.00	0.00	0.00	3.57
2179	2359	2.791560	CAGCTCGATTGATGAAGGTACG	59.208	50.000	0.00	0.00	0.00	3.67
2180	2360	3.799420	GTCAGCTCGATTGATGAAGGTAC	59.201	47.826	3.45	0.00	34.00	3.34
2194	2377	4.026145	GCTTTAGCTTAATCAGTCAGCTCG	60.026	45.833	0.00	0.00	43.03	5.03
2213	2411	3.420893	TGCTTGTAATGGTGCTAGCTTT	58.579	40.909	17.23	7.10	38.62	3.51
2214	2412	3.071874	TGCTTGTAATGGTGCTAGCTT	57.928	42.857	17.23	4.12	38.62	3.74
2232	2432	4.552767	GCATACGTCCATCAATAGTGTTGC	60.553	45.833	0.00	0.00	0.00	4.17
2238	2438	3.995199	ACCTGCATACGTCCATCAATAG	58.005	45.455	0.00	0.00	0.00	1.73
2246	2450	1.477030	CGCGTAACCTGCATACGTCC	61.477	60.000	17.06	3.84	45.87	4.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.