Multiple sequence alignment - TraesCS4D01G132800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G132800 chr4D 100.000 5327 0 0 1 5327 119420854 119415528 0.000000e+00 9838
1 TraesCS4D01G132800 chr4D 95.928 614 24 1 1411 2023 436623908 436623295 0.000000e+00 994
2 TraesCS4D01G132800 chr4D 97.093 516 14 1 2025 2539 436623180 436622665 0.000000e+00 869
3 TraesCS4D01G132800 chr4D 97.458 236 5 1 1 235 119443460 119443225 8.310000e-108 401
4 TraesCS4D01G132800 chr4D 96.186 236 8 1 1 235 117686727 117686492 8.370000e-103 385
5 TraesCS4D01G132800 chr4A 95.865 2733 58 14 2614 5327 449895961 449893265 0.000000e+00 4370
6 TraesCS4D01G132800 chr4A 91.472 598 33 11 761 1343 449896688 449896094 0.000000e+00 806
7 TraesCS4D01G132800 chr4B 95.812 2555 75 10 2777 5327 181698905 181696379 0.000000e+00 4096
8 TraesCS4D01G132800 chr4B 88.836 627 41 16 800 1410 181699616 181699003 0.000000e+00 743
9 TraesCS4D01G132800 chr4B 88.247 502 51 6 238 735 67923296 67922799 1.280000e-165 593
10 TraesCS4D01G132800 chr7D 97.178 1205 29 2 1410 2613 450263312 450264512 0.000000e+00 2032
11 TraesCS4D01G132800 chr7D 95.942 1232 41 8 1410 2638 575813964 575812739 0.000000e+00 1989
12 TraesCS4D01G132800 chr7D 92.012 676 20 9 1677 2347 64562344 64561698 0.000000e+00 918
13 TraesCS4D01G132800 chr7D 96.186 236 8 1 1 235 95550458 95550693 8.370000e-103 385
14 TraesCS4D01G132800 chr7D 96.186 236 8 1 1 235 162542302 162542067 8.370000e-103 385
15 TraesCS4D01G132800 chr7D 97.642 212 4 1 1406 1616 64562552 64562341 3.920000e-96 363
16 TraesCS4D01G132800 chr1D 97.010 1204 35 1 1411 2613 474230256 474229053 0.000000e+00 2023
17 TraesCS4D01G132800 chr1D 96.610 236 7 1 1 235 182303030 182303265 1.800000e-104 390
18 TraesCS4D01G132800 chr5D 96.195 1209 27 9 1411 2618 495076144 495074954 0.000000e+00 1960
19 TraesCS4D01G132800 chr5D 97.227 613 17 0 1411 2023 383081908 383082520 0.000000e+00 1038
20 TraesCS4D01G132800 chr5D 96.290 593 18 2 2025 2616 383082635 383083224 0.000000e+00 970
21 TraesCS4D01G132800 chr2D 96.592 939 29 3 1677 2613 83954712 83955649 0.000000e+00 1554
22 TraesCS4D01G132800 chr2D 88.623 501 52 4 238 735 600313232 600313730 5.900000e-169 604
23 TraesCS4D01G132800 chr2D 89.344 122 11 2 2492 2613 452374879 452374760 9.240000e-33 152
24 TraesCS4D01G132800 chrUn 96.574 613 13 3 1412 2023 27037143 27036538 0.000000e+00 1009
25 TraesCS4D01G132800 chrUn 81.818 308 36 13 1411 1714 27035847 27036138 1.920000e-59 241
26 TraesCS4D01G132800 chr3D 96.970 594 16 2 2025 2616 498426660 498427253 0.000000e+00 996
27 TraesCS4D01G132800 chr3D 95.922 613 20 3 1411 2023 498425938 498426545 0.000000e+00 989
28 TraesCS4D01G132800 chr3D 97.046 237 6 1 1 236 380999118 380999354 1.070000e-106 398
29 TraesCS4D01G132800 chr3D 96.610 236 7 1 1 235 356394440 356394205 1.800000e-104 390
30 TraesCS4D01G132800 chr6D 83.400 747 98 20 5 735 424671223 424671959 0.000000e+00 669
31 TraesCS4D01G132800 chr6D 96.610 236 7 1 1 235 30195460 30195225 1.800000e-104 390
32 TraesCS4D01G132800 chr1B 89.286 504 47 6 236 735 642813134 642813634 4.530000e-175 625
33 TraesCS4D01G132800 chr7B 88.423 501 53 4 238 735 648098176 648097678 2.750000e-167 599
34 TraesCS4D01G132800 chr7B 88.571 490 49 6 238 723 739379561 739380047 5.940000e-164 588
35 TraesCS4D01G132800 chr3B 88.048 502 53 5 238 735 554961290 554960792 5.940000e-164 588
36 TraesCS4D01G132800 chr6B 87.849 502 54 7 238 735 703666890 703666392 2.770000e-162 582
37 TraesCS4D01G132800 chr6B 88.281 128 15 0 2487 2614 17089063 17089190 2.570000e-33 154
38 TraesCS4D01G132800 chr5B 87.873 503 52 7 238 735 568401053 568400555 2.770000e-162 582


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G132800 chr4D 119415528 119420854 5326 True 9838.0 9838 100.0000 1 5327 1 chr4D.!!$R2 5326
1 TraesCS4D01G132800 chr4D 436622665 436623908 1243 True 931.5 994 96.5105 1411 2539 2 chr4D.!!$R4 1128
2 TraesCS4D01G132800 chr4A 449893265 449896688 3423 True 2588.0 4370 93.6685 761 5327 2 chr4A.!!$R1 4566
3 TraesCS4D01G132800 chr4B 181696379 181699616 3237 True 2419.5 4096 92.3240 800 5327 2 chr4B.!!$R2 4527
4 TraesCS4D01G132800 chr7D 450263312 450264512 1200 False 2032.0 2032 97.1780 1410 2613 1 chr7D.!!$F2 1203
5 TraesCS4D01G132800 chr7D 575812739 575813964 1225 True 1989.0 1989 95.9420 1410 2638 1 chr7D.!!$R2 1228
6 TraesCS4D01G132800 chr7D 64561698 64562552 854 True 640.5 918 94.8270 1406 2347 2 chr7D.!!$R3 941
7 TraesCS4D01G132800 chr1D 474229053 474230256 1203 True 2023.0 2023 97.0100 1411 2613 1 chr1D.!!$R1 1202
8 TraesCS4D01G132800 chr5D 495074954 495076144 1190 True 1960.0 1960 96.1950 1411 2618 1 chr5D.!!$R1 1207
9 TraesCS4D01G132800 chr5D 383081908 383083224 1316 False 1004.0 1038 96.7585 1411 2616 2 chr5D.!!$F1 1205
10 TraesCS4D01G132800 chr2D 83954712 83955649 937 False 1554.0 1554 96.5920 1677 2613 1 chr2D.!!$F1 936
11 TraesCS4D01G132800 chrUn 27036538 27037143 605 True 1009.0 1009 96.5740 1412 2023 1 chrUn.!!$R1 611
12 TraesCS4D01G132800 chr3D 498425938 498427253 1315 False 992.5 996 96.4460 1411 2616 2 chr3D.!!$F2 1205
13 TraesCS4D01G132800 chr6D 424671223 424671959 736 False 669.0 669 83.4000 5 735 1 chr6D.!!$F1 730
14 TraesCS4D01G132800 chr1B 642813134 642813634 500 False 625.0 625 89.2860 236 735 1 chr1B.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 772 0.035056 CGGCCCTGAAAGATTGGACT 60.035 55.000 0.0 0.0 34.07 3.85 F
2088 2459 0.043485 GGAAGAAGGGAGGAGGGAGT 59.957 60.000 0.0 0.0 0.00 3.85 F
2737 3130 0.178767 TCAGATTGGGGAGCATCACG 59.821 55.000 0.0 0.0 41.82 4.35 F
3231 3624 1.811266 CCCTTCGACATCTGCACCG 60.811 63.158 0.0 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2318 2695 0.108041 GAAACGCAATCGGGTCCCTA 60.108 55.000 6.29 0.0 37.30 3.53 R
3363 3756 0.179045 ACACAACTGGAGCTGTGACC 60.179 55.000 15.40 0.0 42.87 4.02 R
3939 4332 1.065199 CCAGAAATGCCTGAGCCACTA 60.065 52.381 0.00 0.0 38.69 2.74 R
5009 5411 0.321671 AGGACCAGTGGATCACAACG 59.678 55.000 18.40 0.0 36.74 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.804688 TTTATGCATTTGTAAAAGTGTGGTAC 57.195 30.769 3.54 0.00 0.00 3.34
40 42 5.361285 TGCATTTGTAAAAGTGTGGTACCTT 59.639 36.000 14.36 0.00 0.00 3.50
44 46 4.453751 TGTAAAAGTGTGGTACCTTCACC 58.546 43.478 25.66 16.08 39.20 4.02
45 47 3.945640 AAAAGTGTGGTACCTTCACCT 57.054 42.857 25.66 16.71 39.50 4.00
49 51 5.376756 AAGTGTGGTACCTTCACCTTAAA 57.623 39.130 25.66 0.00 39.50 1.52
54 56 5.548836 TGTGGTACCTTCACCTTAAATACCT 59.451 40.000 14.36 0.00 39.50 3.08
55 57 6.730038 TGTGGTACCTTCACCTTAAATACCTA 59.270 38.462 14.36 0.00 39.50 3.08
56 58 7.093201 TGTGGTACCTTCACCTTAAATACCTAG 60.093 40.741 14.36 0.00 39.50 3.02
60 62 5.432060 ACCTTCACCTTAAATACCTAGGCAT 59.568 40.000 9.30 0.00 32.08 4.40
90 93 6.655003 TGGCACACTCCAAAATTTTTGTTTTA 59.345 30.769 18.05 3.26 32.18 1.52
91 94 7.148340 TGGCACACTCCAAAATTTTTGTTTTAG 60.148 33.333 18.05 12.50 32.18 1.85
92 95 7.148323 GGCACACTCCAAAATTTTTGTTTTAGT 60.148 33.333 18.05 12.99 30.56 2.24
93 96 7.691877 GCACACTCCAAAATTTTTGTTTTAGTG 59.308 33.333 24.20 24.20 40.31 2.74
147 152 8.950208 TCTAAATTTGAATTTGAACGGGTTTT 57.050 26.923 11.02 0.00 38.90 2.43
148 153 8.821894 TCTAAATTTGAATTTGAACGGGTTTTG 58.178 29.630 11.02 0.00 38.90 2.44
150 155 7.617041 AATTTGAATTTGAACGGGTTTTGAA 57.383 28.000 0.00 0.00 0.00 2.69
152 157 6.836577 TTGAATTTGAACGGGTTTTGAATC 57.163 33.333 0.00 0.00 0.00 2.52
154 159 6.341316 TGAATTTGAACGGGTTTTGAATCAA 58.659 32.000 0.00 0.00 0.00 2.57
155 160 6.256757 TGAATTTGAACGGGTTTTGAATCAAC 59.743 34.615 0.00 0.00 0.00 3.18
157 162 2.048498 GAACGGGTTTTGAATCAACGC 58.952 47.619 0.00 0.00 34.55 4.84
160 165 1.963747 GGGTTTTGAATCAACGCGAG 58.036 50.000 15.93 4.76 0.00 5.03
161 166 1.401018 GGGTTTTGAATCAACGCGAGG 60.401 52.381 15.93 3.84 0.00 4.63
162 167 1.533731 GGTTTTGAATCAACGCGAGGA 59.466 47.619 15.93 10.42 0.00 3.71
165 170 4.035208 GGTTTTGAATCAACGCGAGGATAT 59.965 41.667 15.93 6.18 0.00 1.63
176 181 3.380637 ACGCGAGGATATCAACAGTAACT 59.619 43.478 15.93 0.00 0.00 2.24
180 185 5.524284 CGAGGATATCAACAGTAACTGAGG 58.476 45.833 4.83 0.00 35.18 3.86
185 190 3.364889 TCAACAGTAACTGAGGTGACG 57.635 47.619 0.00 0.00 35.18 4.35
187 192 3.050619 CAACAGTAACTGAGGTGACGTC 58.949 50.000 9.11 9.11 35.18 4.34
195 200 0.246360 TGAGGTGACGTCGCATCATT 59.754 50.000 34.73 14.07 41.41 2.57
198 203 0.577269 GGTGACGTCGCATCATTAGC 59.423 55.000 28.67 6.57 0.00 3.09
201 206 0.855349 GACGTCGCATCATTAGCAGG 59.145 55.000 0.00 0.00 0.00 4.85
203 208 0.249447 CGTCGCATCATTAGCAGGGA 60.249 55.000 0.00 0.00 0.00 4.20
204 209 1.806247 CGTCGCATCATTAGCAGGGAA 60.806 52.381 0.00 0.00 0.00 3.97
215 220 5.366768 TCATTAGCAGGGAATTACTGTAGCT 59.633 40.000 10.34 0.00 38.22 3.32
231 236 2.165319 AGCTTAATTATCCGGGCGTC 57.835 50.000 0.00 0.00 0.00 5.19
265 274 2.674177 CGAATTAGACCGAGGCAACACT 60.674 50.000 0.00 0.00 41.41 3.55
275 284 2.279918 GCAACACTCCGGACACGT 60.280 61.111 0.00 0.00 38.78 4.49
277 286 2.014554 CAACACTCCGGACACGTCG 61.015 63.158 0.00 0.00 38.78 5.12
338 347 1.840635 GAAGGAGGAAGCCATACCTGT 59.159 52.381 0.00 0.00 36.57 4.00
368 377 2.279918 ACGAACCCAGCACACGTC 60.280 61.111 0.00 0.00 31.69 4.34
381 390 1.080705 CACGTCCCGTCTTCCAGAC 60.081 63.158 0.00 0.00 41.71 3.51
382 391 1.228490 ACGTCCCGTCTTCCAGACT 60.228 57.895 2.54 0.00 42.92 3.24
394 403 0.601057 TCCAGACTTCGTCGATGCAA 59.399 50.000 7.96 0.00 37.67 4.08
432 441 0.790993 TCCTGGACTACCTCCCAAGT 59.209 55.000 0.00 0.00 38.49 3.16
442 451 4.323477 TCCCAAGTTCCACGCCGG 62.323 66.667 0.00 0.00 0.00 6.13
503 512 1.229209 AGGTCCACCACGAGGATGT 60.229 57.895 5.68 0.00 37.52 3.06
525 534 1.227527 CGCCGCCACATCATCCTTA 60.228 57.895 0.00 0.00 0.00 2.69
532 541 3.879295 CGCCACATCATCCTTACTTGAAT 59.121 43.478 0.00 0.00 0.00 2.57
555 564 3.334881 AGACTGGTTTCCAAATCCATCCT 59.665 43.478 0.00 0.00 30.80 3.24
569 578 2.126882 CCATCCTCAACCATAGGACCA 58.873 52.381 0.00 0.00 45.78 4.02
575 584 1.024271 CAACCATAGGACCAATGGCG 58.976 55.000 0.00 0.00 46.63 5.69
577 586 0.623723 ACCATAGGACCAATGGCGTT 59.376 50.000 0.00 0.00 46.63 4.84
611 621 5.006153 TCCGAAGAATCTTTATTCAGCGA 57.994 39.130 0.00 0.00 43.44 4.93
621 631 7.741027 ATCTTTATTCAGCGATGTCATCATT 57.259 32.000 13.22 0.00 34.06 2.57
623 633 6.539826 TCTTTATTCAGCGATGTCATCATTGT 59.460 34.615 13.22 0.00 37.66 2.71
632 642 1.067213 TGTCATCATTGTCGCCGAAGA 60.067 47.619 0.00 0.00 0.00 2.87
634 644 2.609459 GTCATCATTGTCGCCGAAGAAT 59.391 45.455 0.00 0.00 0.00 2.40
635 645 2.866156 TCATCATTGTCGCCGAAGAATC 59.134 45.455 0.00 0.00 0.00 2.52
636 646 1.651987 TCATTGTCGCCGAAGAATCC 58.348 50.000 0.00 0.00 0.00 3.01
637 647 1.207089 TCATTGTCGCCGAAGAATCCT 59.793 47.619 0.00 0.00 0.00 3.24
639 649 3.118920 TCATTGTCGCCGAAGAATCCTTA 60.119 43.478 0.00 0.00 31.62 2.69
640 650 2.288961 TGTCGCCGAAGAATCCTTAC 57.711 50.000 0.00 0.00 31.62 2.34
641 651 1.822990 TGTCGCCGAAGAATCCTTACT 59.177 47.619 0.00 0.00 31.62 2.24
671 683 7.014615 ACAACCTAAAAACCTAGACTACGAGAA 59.985 37.037 0.00 0.00 0.00 2.87
672 684 7.530426 ACCTAAAAACCTAGACTACGAGAAA 57.470 36.000 0.00 0.00 0.00 2.52
689 701 5.699458 ACGAGAAAGTAAAAACGATCCACAT 59.301 36.000 0.00 0.00 0.00 3.21
694 706 4.247258 AGTAAAAACGATCCACATGCGTA 58.753 39.130 0.00 0.00 37.26 4.42
713 726 4.880426 ATCCGGCGACCCCCTCAT 62.880 66.667 9.30 0.00 0.00 2.90
728 741 1.366854 CTCATCACCGACGACCGAGA 61.367 60.000 0.00 0.00 41.76 4.04
735 748 3.570638 GACGACCGAGATCGCCGA 61.571 66.667 17.55 0.00 46.22 5.54
736 749 3.104602 GACGACCGAGATCGCCGAA 62.105 63.158 17.55 0.00 46.22 4.30
737 750 2.101575 CGACCGAGATCGCCGAAA 59.898 61.111 11.26 0.00 36.53 3.46
738 751 1.515519 CGACCGAGATCGCCGAAAA 60.516 57.895 11.26 0.00 36.53 2.29
739 752 1.074319 CGACCGAGATCGCCGAAAAA 61.074 55.000 11.26 0.00 36.53 1.94
740 753 0.369248 GACCGAGATCGCCGAAAAAC 59.631 55.000 11.26 0.00 38.18 2.43
741 754 1.343821 CCGAGATCGCCGAAAAACG 59.656 57.895 11.26 0.00 38.18 3.60
751 764 3.472263 CGAAAAACGGCCCTGAAAG 57.528 52.632 0.00 0.00 38.46 2.62
752 765 0.948678 CGAAAAACGGCCCTGAAAGA 59.051 50.000 0.00 0.00 38.46 2.52
753 766 1.539827 CGAAAAACGGCCCTGAAAGAT 59.460 47.619 0.00 0.00 38.46 2.40
754 767 2.030274 CGAAAAACGGCCCTGAAAGATT 60.030 45.455 0.00 0.00 38.46 2.40
755 768 3.317150 GAAAAACGGCCCTGAAAGATTG 58.683 45.455 0.00 0.00 34.07 2.67
756 769 1.256812 AAACGGCCCTGAAAGATTGG 58.743 50.000 0.00 0.00 34.07 3.16
757 770 0.404040 AACGGCCCTGAAAGATTGGA 59.596 50.000 0.00 0.00 34.07 3.53
758 771 0.322546 ACGGCCCTGAAAGATTGGAC 60.323 55.000 0.00 0.00 34.07 4.02
759 772 0.035056 CGGCCCTGAAAGATTGGACT 60.035 55.000 0.00 0.00 34.07 3.85
770 783 3.533606 AGATTGGACTGACTCCGATTG 57.466 47.619 0.00 0.00 42.75 2.67
779 792 3.067461 ACTGACTCCGATTGTAGATGCTC 59.933 47.826 0.00 0.00 0.00 4.26
798 811 4.534500 TGCTCTTACCAACATTCTTCCCTA 59.466 41.667 0.00 0.00 0.00 3.53
816 834 2.492484 CCTAGTGCGGATGGGTAGATAC 59.508 54.545 0.00 0.00 0.00 2.24
851 869 5.365605 TGTATTCGGTATTCCATTCCAGACT 59.634 40.000 0.00 0.00 0.00 3.24
923 941 3.147595 GCCTTTTCCGCCCATCCC 61.148 66.667 0.00 0.00 0.00 3.85
924 942 2.683475 CCTTTTCCGCCCATCCCT 59.317 61.111 0.00 0.00 0.00 4.20
949 967 3.075005 TCGTGCCTCCTGCTACCC 61.075 66.667 0.00 0.00 42.00 3.69
1116 1152 0.105709 CTCTTCCTCCTCCTCCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
1119 1155 3.756783 CCTCCTCCTCCTCCCCGT 61.757 72.222 0.00 0.00 0.00 5.28
1127 1163 2.203938 TCCTCCCCGTTTGCTCCT 60.204 61.111 0.00 0.00 0.00 3.69
1218 1257 5.459982 AAACCCTGCCACCACTATAATTA 57.540 39.130 0.00 0.00 0.00 1.40
1240 1279 2.437396 TTTAGATCCCCGTCCCGGC 61.437 63.158 0.00 0.00 46.86 6.13
1265 1304 0.530650 ATCTGCACAAGTATCGCGGG 60.531 55.000 6.13 0.00 32.73 6.13
1305 1344 3.349927 TGTACTCTTGCGCTTCTACCTA 58.650 45.455 9.73 0.00 0.00 3.08
1333 1373 3.665871 GCAGCACACGATTTCTTTTCTTC 59.334 43.478 0.00 0.00 0.00 2.87
1337 1377 4.222114 CACACGATTTCTTTTCTTCAGGC 58.778 43.478 0.00 0.00 0.00 4.85
1343 1383 6.316390 ACGATTTCTTTTCTTCAGGCGATATT 59.684 34.615 0.00 0.00 0.00 1.28
1344 1384 6.848296 CGATTTCTTTTCTTCAGGCGATATTC 59.152 38.462 0.00 0.00 0.00 1.75
1345 1385 7.465916 CGATTTCTTTTCTTCAGGCGATATTCA 60.466 37.037 0.00 0.00 0.00 2.57
1346 1386 7.630242 TTTCTTTTCTTCAGGCGATATTCAT 57.370 32.000 0.00 0.00 0.00 2.57
1347 1387 8.731275 TTTCTTTTCTTCAGGCGATATTCATA 57.269 30.769 0.00 0.00 0.00 2.15
1348 1388 7.715265 TCTTTTCTTCAGGCGATATTCATAC 57.285 36.000 0.00 0.00 0.00 2.39
1350 1390 6.844696 TTTCTTCAGGCGATATTCATACAC 57.155 37.500 0.00 0.00 0.00 2.90
1351 1391 5.529581 TCTTCAGGCGATATTCATACACA 57.470 39.130 0.00 0.00 0.00 3.72
1352 1392 6.101650 TCTTCAGGCGATATTCATACACAT 57.898 37.500 0.00 0.00 0.00 3.21
1353 1393 7.227049 TCTTCAGGCGATATTCATACACATA 57.773 36.000 0.00 0.00 0.00 2.29
1403 1517 2.253610 ACGTCCCCTTCAATCTGTACA 58.746 47.619 0.00 0.00 0.00 2.90
1504 1619 2.233271 ACCTACCACTTTTCTCGTCGA 58.767 47.619 0.00 0.00 0.00 4.20
1607 1723 2.428403 GCCGCGCGTTTGTTTGAT 60.428 55.556 29.95 0.00 0.00 2.57
1852 1997 3.785859 GAGGTCCCTCATGCGCCA 61.786 66.667 4.18 0.00 42.31 5.69
2088 2459 0.043485 GGAAGAAGGGAGGAGGGAGT 59.957 60.000 0.00 0.00 0.00 3.85
2452 2830 3.678056 AGTGACGGTTCATTTAGCTGA 57.322 42.857 0.00 0.00 33.11 4.26
2737 3130 0.178767 TCAGATTGGGGAGCATCACG 59.821 55.000 0.00 0.00 41.82 4.35
2759 3152 7.991460 TCACGGTATAGATACATATACTGGGAG 59.009 40.741 11.75 5.30 45.84 4.30
2760 3153 7.774157 CACGGTATAGATACATATACTGGGAGT 59.226 40.741 14.19 0.00 45.45 3.85
2761 3154 7.774157 ACGGTATAGATACATATACTGGGAGTG 59.226 40.741 14.19 0.00 44.27 3.51
2762 3155 7.228906 CGGTATAGATACATATACTGGGAGTGG 59.771 44.444 2.28 0.00 39.67 4.00
2763 3156 7.506261 GGTATAGATACATATACTGGGAGTGGG 59.494 44.444 2.28 0.00 38.27 4.61
2773 3166 1.912043 CTGGGAGTGGGATGGGATATC 59.088 57.143 0.00 0.00 0.00 1.63
2810 3203 7.554118 CCATTCCTTCTCTTTTCATACTGCTAA 59.446 37.037 0.00 0.00 0.00 3.09
2915 3308 5.234972 TGCATCTCATACATACTTTCTTGCG 59.765 40.000 0.00 0.00 0.00 4.85
2933 3326 4.303086 TGCGTACTTAGTTCTATGCCTC 57.697 45.455 0.00 0.00 0.00 4.70
2955 3348 5.423015 TCTGCTCTATCAGAACATGAAACC 58.577 41.667 0.00 0.00 42.53 3.27
2958 3351 6.341316 TGCTCTATCAGAACATGAAACCTAC 58.659 40.000 0.00 0.00 42.53 3.18
3231 3624 1.811266 CCCTTCGACATCTGCACCG 60.811 63.158 0.00 0.00 0.00 4.94
3304 3697 2.672996 CCCTGACAAACCCAGCGG 60.673 66.667 0.00 0.00 0.00 5.52
3363 3756 1.994507 CTGCTCCGACCACTACTCCG 61.995 65.000 0.00 0.00 0.00 4.63
3441 3834 2.358247 GAAACCGCGCTCCAGGAA 60.358 61.111 5.56 0.00 0.00 3.36
3573 3966 3.844211 ACAGCTATTACCAGAAGAACCCA 59.156 43.478 0.00 0.00 0.00 4.51
3769 4162 2.029290 TCTCCAACGAGGTGAAGCTTAC 60.029 50.000 0.00 0.00 36.98 2.34
3803 4196 2.000447 GGTAACATGGAACTCTCGTGC 59.000 52.381 0.00 0.00 0.00 5.34
3939 4332 4.648762 CCAGGATCATCAGTACTGAACTCT 59.351 45.833 28.43 17.55 43.58 3.24
4002 4395 2.352805 CCAGGAGAGGCCAACACC 59.647 66.667 5.01 6.93 40.02 4.16
4259 4652 6.281405 CCTGTATTAACCAGTGGATGTAGTC 58.719 44.000 18.40 1.30 0.00 2.59
4271 4664 6.547880 CAGTGGATGTAGTCTCTAGGTGTATT 59.452 42.308 0.00 0.00 0.00 1.89
4399 4792 1.623311 GCAGTTGGGGCCATTAAGTTT 59.377 47.619 4.39 0.00 0.00 2.66
4830 5230 7.455641 GCATCTATAAGTAGAAGCACCTCTA 57.544 40.000 7.55 0.00 46.01 2.43
4831 5231 8.062065 GCATCTATAAGTAGAAGCACCTCTAT 57.938 38.462 7.55 0.00 46.01 1.98
5024 5426 0.321671 ACTCCGTTGTGATCCACTGG 59.678 55.000 0.00 0.00 35.11 4.00
5043 5445 2.026822 TGGTCCTCTTGGATGCTTTCTC 60.027 50.000 0.00 0.00 45.29 2.87
5138 5540 4.024048 TCGCTGGAGAATGAGTTTTGTTTC 60.024 41.667 0.00 0.00 0.00 2.78
5139 5541 4.023707 CGCTGGAGAATGAGTTTTGTTTCT 60.024 41.667 0.00 0.00 0.00 2.52
5140 5542 5.506317 CGCTGGAGAATGAGTTTTGTTTCTT 60.506 40.000 0.00 0.00 0.00 2.52
5141 5543 6.276091 GCTGGAGAATGAGTTTTGTTTCTTT 58.724 36.000 0.00 0.00 0.00 2.52
5150 5560 9.877137 AATGAGTTTTGTTTCTTTGTTTGTTTC 57.123 25.926 0.00 0.00 0.00 2.78
5214 5624 0.798776 GGTTGGTCTGTCATGCTTCG 59.201 55.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.988815 ACCACACTTTTACAAATGCATAAATAA 57.011 25.926 0.00 0.00 0.00 1.40
12 13 7.868415 GGTACCACACTTTTACAAATGCATAAA 59.132 33.333 7.15 0.00 0.00 1.40
16 17 4.890581 AGGTACCACACTTTTACAAATGCA 59.109 37.500 15.94 0.00 0.00 3.96
20 21 5.357596 GGTGAAGGTACCACACTTTTACAAA 59.642 40.000 28.37 0.36 40.54 2.83
23 24 4.711399 AGGTGAAGGTACCACACTTTTAC 58.289 43.478 28.37 15.77 43.37 2.01
24 25 5.376756 AAGGTGAAGGTACCACACTTTTA 57.623 39.130 28.37 6.69 43.37 1.52
25 26 3.945640 AGGTGAAGGTACCACACTTTT 57.054 42.857 28.37 17.85 43.37 2.27
29 30 5.645067 GGTATTTAAGGTGAAGGTACCACAC 59.355 44.000 24.57 24.57 43.37 3.82
30 31 5.548836 AGGTATTTAAGGTGAAGGTACCACA 59.451 40.000 15.94 11.13 43.37 4.17
31 32 6.058553 AGGTATTTAAGGTGAAGGTACCAC 57.941 41.667 15.94 8.42 43.37 4.16
32 33 6.384886 CCTAGGTATTTAAGGTGAAGGTACCA 59.615 42.308 15.94 0.00 43.37 3.25
33 34 6.687393 GCCTAGGTATTTAAGGTGAAGGTACC 60.687 46.154 11.31 2.73 41.17 3.34
36 37 4.786454 TGCCTAGGTATTTAAGGTGAAGGT 59.214 41.667 11.31 0.00 32.67 3.50
37 38 5.367945 TGCCTAGGTATTTAAGGTGAAGG 57.632 43.478 11.31 0.00 32.67 3.46
40 42 9.349713 CAAATAATGCCTAGGTATTTAAGGTGA 57.650 33.333 27.35 10.41 32.88 4.02
44 46 8.082242 GTGCCAAATAATGCCTAGGTATTTAAG 58.918 37.037 27.35 15.63 32.88 1.85
45 47 7.561722 TGTGCCAAATAATGCCTAGGTATTTAA 59.438 33.333 27.35 13.16 32.88 1.52
49 51 4.827284 GTGTGCCAAATAATGCCTAGGTAT 59.173 41.667 11.31 8.90 0.00 2.73
54 56 3.287222 GGAGTGTGCCAAATAATGCCTA 58.713 45.455 0.00 0.00 0.00 3.93
55 57 2.102578 GGAGTGTGCCAAATAATGCCT 58.897 47.619 0.00 0.00 0.00 4.75
56 58 1.824230 TGGAGTGTGCCAAATAATGCC 59.176 47.619 0.00 0.00 34.31 4.40
121 124 8.950208 AAACCCGTTCAAATTCAAATTTAGAA 57.050 26.923 0.63 0.00 36.52 2.10
123 126 8.821894 TCAAAACCCGTTCAAATTCAAATTTAG 58.178 29.630 0.63 0.00 36.52 1.85
124 127 8.718102 TCAAAACCCGTTCAAATTCAAATTTA 57.282 26.923 0.63 0.00 36.52 1.40
126 129 7.617041 TTCAAAACCCGTTCAAATTCAAATT 57.383 28.000 0.00 0.00 0.00 1.82
127 130 7.497249 TGATTCAAAACCCGTTCAAATTCAAAT 59.503 29.630 0.00 0.00 0.00 2.32
140 145 0.236187 TCGCGTTGATTCAAAACCCG 59.764 50.000 5.77 1.91 31.73 5.28
141 146 1.401018 CCTCGCGTTGATTCAAAACCC 60.401 52.381 5.77 0.00 0.00 4.11
143 148 2.961522 TCCTCGCGTTGATTCAAAAC 57.038 45.000 5.77 0.00 0.00 2.43
147 152 3.726291 TGATATCCTCGCGTTGATTCA 57.274 42.857 15.96 15.07 0.00 2.57
148 153 3.802139 TGTTGATATCCTCGCGTTGATTC 59.198 43.478 15.96 13.36 0.00 2.52
150 155 3.181475 ACTGTTGATATCCTCGCGTTGAT 60.181 43.478 5.77 11.97 0.00 2.57
152 157 2.540515 ACTGTTGATATCCTCGCGTTG 58.459 47.619 5.77 0.00 0.00 4.10
154 159 3.380637 AGTTACTGTTGATATCCTCGCGT 59.619 43.478 5.77 0.00 0.00 6.01
155 160 3.731216 CAGTTACTGTTGATATCCTCGCG 59.269 47.826 0.00 0.00 0.00 5.87
157 162 5.067936 ACCTCAGTTACTGTTGATATCCTCG 59.932 44.000 12.41 0.00 32.61 4.63
158 163 6.096987 TCACCTCAGTTACTGTTGATATCCTC 59.903 42.308 12.41 0.00 32.61 3.71
159 164 5.958380 TCACCTCAGTTACTGTTGATATCCT 59.042 40.000 12.41 0.00 32.61 3.24
160 165 6.043411 GTCACCTCAGTTACTGTTGATATCC 58.957 44.000 12.41 0.00 32.61 2.59
161 166 5.744345 CGTCACCTCAGTTACTGTTGATATC 59.256 44.000 12.41 0.00 32.61 1.63
162 167 5.185249 ACGTCACCTCAGTTACTGTTGATAT 59.815 40.000 12.41 4.14 32.61 1.63
165 170 2.691526 ACGTCACCTCAGTTACTGTTGA 59.308 45.455 12.41 10.38 32.61 3.18
176 181 0.246360 AATGATGCGACGTCACCTCA 59.754 50.000 17.16 14.74 0.00 3.86
180 185 1.256376 CTGCTAATGATGCGACGTCAC 59.744 52.381 17.16 6.48 0.00 3.67
185 190 1.953559 TTCCCTGCTAATGATGCGAC 58.046 50.000 0.00 0.00 0.00 5.19
187 192 4.067896 AGTAATTCCCTGCTAATGATGCG 58.932 43.478 0.00 0.00 0.00 4.73
195 200 6.801718 TTAAGCTACAGTAATTCCCTGCTA 57.198 37.500 5.24 0.00 33.09 3.49
198 203 9.220767 GGATAATTAAGCTACAGTAATTCCCTG 57.779 37.037 4.73 4.04 33.20 4.45
201 206 7.333672 CCCGGATAATTAAGCTACAGTAATTCC 59.666 40.741 0.73 1.92 33.20 3.01
203 208 6.653740 GCCCGGATAATTAAGCTACAGTAATT 59.346 38.462 0.73 6.42 34.91 1.40
204 209 6.171213 GCCCGGATAATTAAGCTACAGTAAT 58.829 40.000 0.73 0.00 0.00 1.89
215 220 2.168936 ACTGTGACGCCCGGATAATTAA 59.831 45.455 0.73 0.00 0.00 1.40
249 258 1.592400 CGGAGTGTTGCCTCGGTCTA 61.592 60.000 0.00 0.00 31.98 2.59
256 265 2.426023 GTGTCCGGAGTGTTGCCT 59.574 61.111 3.06 0.00 0.00 4.75
265 274 2.971959 TTCGACGACGTGTCCGGA 60.972 61.111 4.58 0.00 45.23 5.14
301 310 2.775032 TTCGGCGTCTTAGTGGTGGC 62.775 60.000 6.85 0.00 0.00 5.01
306 315 0.179134 CCTCCTTCGGCGTCTTAGTG 60.179 60.000 6.85 0.00 0.00 2.74
328 337 0.464036 TCGTGGATGACAGGTATGGC 59.536 55.000 0.00 0.00 36.39 4.40
338 347 0.320073 GGTTCGTGGTTCGTGGATGA 60.320 55.000 0.00 0.00 40.80 2.92
381 390 0.865111 TGTGGTTTGCATCGACGAAG 59.135 50.000 0.00 0.00 0.00 3.79
382 391 1.300481 TTGTGGTTTGCATCGACGAA 58.700 45.000 0.00 0.00 0.00 3.85
394 403 0.322816 AGCGGATGCAGATTGTGGTT 60.323 50.000 0.00 0.00 46.23 3.67
516 525 7.682787 ACCAGTCTATTCAAGTAAGGATGAT 57.317 36.000 0.00 0.00 0.00 2.45
517 526 7.496346 AACCAGTCTATTCAAGTAAGGATGA 57.504 36.000 0.00 0.00 0.00 2.92
525 534 6.434340 GGATTTGGAAACCAGTCTATTCAAGT 59.566 38.462 0.00 0.00 33.81 3.16
532 541 4.540099 AGGATGGATTTGGAAACCAGTCTA 59.460 41.667 0.00 0.00 37.12 2.59
555 564 1.408127 CGCCATTGGTCCTATGGTTGA 60.408 52.381 26.93 0.00 43.65 3.18
569 578 0.400213 TCTTCCCTGACAACGCCATT 59.600 50.000 0.00 0.00 0.00 3.16
575 584 2.233922 TCTTCGGATCTTCCCTGACAAC 59.766 50.000 0.00 0.00 31.13 3.32
577 586 2.231716 TCTTCGGATCTTCCCTGACA 57.768 50.000 0.00 0.00 31.13 3.58
611 621 1.935873 CTTCGGCGACAATGATGACAT 59.064 47.619 10.16 0.00 38.50 3.06
621 631 1.822990 AGTAAGGATTCTTCGGCGACA 59.177 47.619 10.16 0.00 34.59 4.35
623 633 2.494471 TCAAGTAAGGATTCTTCGGCGA 59.506 45.455 4.99 4.99 34.59 5.54
632 642 8.418662 GGTTTTTAGGTTGTTCAAGTAAGGATT 58.581 33.333 0.00 0.00 0.00 3.01
634 644 7.120716 AGGTTTTTAGGTTGTTCAAGTAAGGA 58.879 34.615 0.00 0.00 0.00 3.36
635 645 7.342769 AGGTTTTTAGGTTGTTCAAGTAAGG 57.657 36.000 0.00 0.00 0.00 2.69
636 646 9.333724 TCTAGGTTTTTAGGTTGTTCAAGTAAG 57.666 33.333 0.00 0.00 0.00 2.34
637 647 9.112725 GTCTAGGTTTTTAGGTTGTTCAAGTAA 57.887 33.333 0.00 0.00 0.00 2.24
639 649 7.344134 AGTCTAGGTTTTTAGGTTGTTCAAGT 58.656 34.615 0.00 0.00 0.00 3.16
640 650 7.803279 AGTCTAGGTTTTTAGGTTGTTCAAG 57.197 36.000 0.00 0.00 0.00 3.02
641 651 7.439056 CGTAGTCTAGGTTTTTAGGTTGTTCAA 59.561 37.037 0.00 0.00 0.00 2.69
671 683 3.500680 ACGCATGTGGATCGTTTTTACTT 59.499 39.130 11.65 0.00 31.89 2.24
672 684 3.071479 ACGCATGTGGATCGTTTTTACT 58.929 40.909 11.65 0.00 31.89 2.24
689 701 3.896133 GGTCGCCGGATCTACGCA 61.896 66.667 5.05 0.00 0.00 5.24
713 726 2.458610 CGATCTCGGTCGTCGGTGA 61.459 63.158 0.00 0.00 39.77 4.02
735 748 2.037121 CCAATCTTTCAGGGCCGTTTTT 59.963 45.455 0.00 0.00 0.00 1.94
736 749 1.618343 CCAATCTTTCAGGGCCGTTTT 59.382 47.619 0.00 0.00 0.00 2.43
737 750 1.203001 TCCAATCTTTCAGGGCCGTTT 60.203 47.619 0.00 0.00 0.00 3.60
738 751 0.404040 TCCAATCTTTCAGGGCCGTT 59.596 50.000 0.00 0.00 0.00 4.44
739 752 0.322546 GTCCAATCTTTCAGGGCCGT 60.323 55.000 0.00 0.00 0.00 5.68
740 753 0.035056 AGTCCAATCTTTCAGGGCCG 60.035 55.000 0.00 0.00 0.00 6.13
741 754 1.004745 TCAGTCCAATCTTTCAGGGCC 59.995 52.381 0.00 0.00 0.00 5.80
742 755 2.087646 GTCAGTCCAATCTTTCAGGGC 58.912 52.381 0.00 0.00 0.00 5.19
743 756 3.604582 GAGTCAGTCCAATCTTTCAGGG 58.395 50.000 0.00 0.00 0.00 4.45
744 757 3.604582 GGAGTCAGTCCAATCTTTCAGG 58.395 50.000 0.00 0.00 46.10 3.86
755 768 3.797184 GCATCTACAATCGGAGTCAGTCC 60.797 52.174 0.00 0.00 42.85 3.85
756 769 3.067461 AGCATCTACAATCGGAGTCAGTC 59.933 47.826 0.00 0.00 0.00 3.51
757 770 3.027412 AGCATCTACAATCGGAGTCAGT 58.973 45.455 0.00 0.00 0.00 3.41
758 771 3.637432 GAGCATCTACAATCGGAGTCAG 58.363 50.000 0.00 0.00 0.00 3.51
759 772 3.717400 GAGCATCTACAATCGGAGTCA 57.283 47.619 0.00 0.00 0.00 3.41
779 792 4.636206 GCACTAGGGAAGAATGTTGGTAAG 59.364 45.833 0.00 0.00 0.00 2.34
798 811 2.082140 TGTATCTACCCATCCGCACT 57.918 50.000 0.00 0.00 0.00 4.40
816 834 8.024865 TGGAATACCGAATACAATACTCGTATG 58.975 37.037 0.00 0.00 39.42 2.39
851 869 0.393820 TCACTGTCACTGCAGCATCA 59.606 50.000 15.27 9.26 39.96 3.07
923 941 0.107214 AGGAGGCACGAGAGAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
924 942 0.393673 CAGGAGGCACGAGAGAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
959 977 1.632589 AAGGAAAAGGTGGTGATGGC 58.367 50.000 0.00 0.00 0.00 4.40
1116 1152 1.443802 GAAGAGGAAGGAGCAAACGG 58.556 55.000 0.00 0.00 0.00 4.44
1119 1155 1.276421 CGAGGAAGAGGAAGGAGCAAA 59.724 52.381 0.00 0.00 0.00 3.68
1127 1163 0.684805 GGGAGCTCGAGGAAGAGGAA 60.685 60.000 15.58 0.00 38.63 3.36
1218 1257 1.201424 GGGACGGGGATCTAAACAGT 58.799 55.000 0.00 0.00 0.00 3.55
1240 1279 1.863454 GATACTTGTGCAGATGAGCCG 59.137 52.381 3.58 0.00 0.00 5.52
1265 1304 8.398665 AGAGTACATTTCGGAATCTAAAAATGC 58.601 33.333 12.09 0.00 40.89 3.56
1305 1344 4.687215 ATCGTGTGCTGCAGCCGT 62.687 61.111 34.64 17.83 41.18 5.68
1333 1373 5.286320 GTCGTATGTGTATGAATATCGCCTG 59.714 44.000 0.00 0.00 0.00 4.85
1337 1377 5.507180 GTCCGTCGTATGTGTATGAATATCG 59.493 44.000 0.00 0.00 0.00 2.92
1343 1383 2.278854 TCGTCCGTCGTATGTGTATGA 58.721 47.619 0.00 0.00 40.80 2.15
1344 1384 2.742954 TCGTCCGTCGTATGTGTATG 57.257 50.000 0.00 0.00 40.80 2.39
1345 1385 2.537529 CGTTCGTCCGTCGTATGTGTAT 60.538 50.000 0.00 0.00 40.80 2.29
1346 1386 1.201910 CGTTCGTCCGTCGTATGTGTA 60.202 52.381 0.00 0.00 40.80 2.90
1347 1387 0.453282 CGTTCGTCCGTCGTATGTGT 60.453 55.000 0.00 0.00 40.80 3.72
1348 1388 0.179217 TCGTTCGTCCGTCGTATGTG 60.179 55.000 0.00 0.00 40.80 3.21
1350 1390 1.818850 AATCGTTCGTCCGTCGTATG 58.181 50.000 0.00 0.00 40.80 2.39
1351 1391 3.673746 TTAATCGTTCGTCCGTCGTAT 57.326 42.857 0.00 0.00 40.80 3.06
1352 1392 3.673746 ATTAATCGTTCGTCCGTCGTA 57.326 42.857 0.00 0.00 40.80 3.43
1353 1393 2.549633 ATTAATCGTTCGTCCGTCGT 57.450 45.000 0.00 0.00 40.80 4.34
1607 1723 1.609580 GCCCCACATGTCAGTTAACGA 60.610 52.381 0.00 0.00 0.00 3.85
2023 2394 0.405585 CCTTCCTCCCTTCCTTGCAA 59.594 55.000 0.00 0.00 0.00 4.08
2088 2459 3.055080 CTTCGTGTACGCCGCCCTA 62.055 63.158 0.00 0.00 39.60 3.53
2318 2695 0.108041 GAAACGCAATCGGGTCCCTA 60.108 55.000 6.29 0.00 37.30 3.53
2452 2830 1.282157 GTTTATGACAGGTGGAGCCCT 59.718 52.381 0.00 0.00 38.26 5.19
2580 2958 7.733402 AGCATAAAACTACCACTTTTCGTTA 57.267 32.000 0.00 0.00 0.00 3.18
2737 3130 7.506261 CCCACTCCCAGTATATGTATCTATACC 59.494 44.444 0.00 0.00 35.89 2.73
2810 3203 4.220693 TGCATGCTCAGTTGTAGGTAAT 57.779 40.909 20.33 0.00 0.00 1.89
2813 3206 2.290514 ACATGCATGCTCAGTTGTAGGT 60.291 45.455 26.53 0.01 0.00 3.08
2862 3255 5.920193 CCAAGAGGGCTATGAAATGAAAA 57.080 39.130 0.00 0.00 0.00 2.29
2903 3296 9.517609 CATAGAACTAAGTACGCAAGAAAGTAT 57.482 33.333 0.05 0.00 43.62 2.12
2915 3308 5.300792 AGAGCAGAGGCATAGAACTAAGTAC 59.699 44.000 0.00 0.00 44.61 2.73
2933 3326 5.426504 AGGTTTCATGTTCTGATAGAGCAG 58.573 41.667 2.08 0.00 38.82 4.24
2958 3351 6.294473 AGAGTGATTAACTAGCATGGAATGG 58.706 40.000 0.00 0.00 41.89 3.16
3231 3624 0.517316 GAATGGTGACTGGCGTGTTC 59.483 55.000 0.00 0.00 0.00 3.18
3288 3681 3.365265 GCCGCTGGGTTTGTCAGG 61.365 66.667 0.00 0.00 34.97 3.86
3363 3756 0.179045 ACACAACTGGAGCTGTGACC 60.179 55.000 15.40 0.00 42.87 4.02
3441 3834 4.919653 CACGCATAGTCCAGTGCT 57.080 55.556 0.00 0.00 39.16 4.40
3769 4162 6.164876 TCCATGTTACCAGAATGCAAATTTG 58.835 36.000 14.03 14.03 31.97 2.32
3803 4196 7.030075 TCACCATACACATCATTGCATTAAG 57.970 36.000 0.00 0.00 0.00 1.85
3939 4332 1.065199 CCAGAAATGCCTGAGCCACTA 60.065 52.381 0.00 0.00 38.69 2.74
4002 4395 1.804396 TTGAGTGCCAACCATTGCCG 61.804 55.000 0.00 0.00 0.00 5.69
4338 4731 6.088016 TGTGCTGCTTCAAGTTTAAATCAT 57.912 33.333 0.00 0.00 0.00 2.45
4399 4792 2.158871 ACCACCTAAACTCGCTTCACAA 60.159 45.455 0.00 0.00 0.00 3.33
4731 5131 3.233507 AGGACCAACAATTGAATGCTGT 58.766 40.909 13.59 5.22 0.00 4.40
4733 5133 3.499338 TGAGGACCAACAATTGAATGCT 58.501 40.909 13.59 4.69 0.00 3.79
4968 5370 8.857098 CCAAATAGGAATCAGAATCATTGACAT 58.143 33.333 0.00 0.00 41.22 3.06
5009 5411 0.321671 AGGACCAGTGGATCACAACG 59.678 55.000 18.40 0.00 36.74 4.10
5043 5445 8.404000 CCATGTGAAATGGAATTAGAAGAAGAG 58.596 37.037 0.00 0.00 41.64 2.85
5138 5540 6.250527 CCTAAGTGACAACGAAACAAACAAAG 59.749 38.462 0.00 0.00 0.00 2.77
5139 5541 6.087522 CCTAAGTGACAACGAAACAAACAAA 58.912 36.000 0.00 0.00 0.00 2.83
5140 5542 5.632959 CCTAAGTGACAACGAAACAAACAA 58.367 37.500 0.00 0.00 0.00 2.83
5141 5543 4.437659 GCCTAAGTGACAACGAAACAAACA 60.438 41.667 0.00 0.00 0.00 2.83
5150 5560 1.779569 AACTCGCCTAAGTGACAACG 58.220 50.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.