Multiple sequence alignment - TraesCS4D01G132200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G132200 chr4D 100.000 3895 0 0 1 3895 119224336 119228230 0.000000e+00 7193.0
1 TraesCS4D01G132200 chr4D 82.667 375 49 9 159 518 111143588 111143215 6.280000e-83 318.0
2 TraesCS4D01G132200 chr4D 100.000 32 0 0 3098 3129 119227464 119227433 4.200000e-05 60.2
3 TraesCS4D01G132200 chr4A 90.180 1884 90 25 26 1858 454589337 454591176 0.000000e+00 2366.0
4 TraesCS4D01G132200 chr4A 95.034 1168 34 10 2073 3231 454591183 454592335 0.000000e+00 1814.0
5 TraesCS4D01G132200 chr4A 84.182 373 42 9 159 515 465772954 465773325 2.880000e-91 346.0
6 TraesCS4D01G132200 chr4A 92.891 211 12 3 3280 3488 454592536 454592745 1.760000e-78 303.0
7 TraesCS4D01G132200 chr4A 75.912 274 44 14 3616 3879 679080289 679080028 1.900000e-23 121.0
8 TraesCS4D01G132200 chr4B 95.148 1319 49 9 552 1866 181428965 181430272 0.000000e+00 2067.0
9 TraesCS4D01G132200 chr4B 91.205 1137 38 21 1948 3069 181430271 181431360 0.000000e+00 1489.0
10 TraesCS4D01G132200 chr4B 89.315 496 38 9 52 535 181427657 181428149 3.330000e-170 608.0
11 TraesCS4D01G132200 chr4B 82.960 446 42 12 3147 3576 181431357 181431784 4.750000e-99 372.0
12 TraesCS4D01G132200 chr4B 83.333 252 34 5 3600 3851 88737472 88737715 3.920000e-55 226.0
13 TraesCS4D01G132200 chr4B 89.655 58 6 0 1892 1949 600135323 600135266 1.500000e-09 75.0
14 TraesCS4D01G132200 chr4B 89.286 56 2 4 2340 2392 649399188 649399134 2.510000e-07 67.6
15 TraesCS4D01G132200 chr5B 83.333 342 42 10 159 487 97518969 97518630 6.320000e-78 302.0
16 TraesCS4D01G132200 chr5B 100.000 29 0 0 1859 1887 607838365 607838393 2.000000e-03 54.7
17 TraesCS4D01G132200 chr3B 81.250 368 55 8 159 513 418699001 418699367 6.370000e-73 285.0
18 TraesCS4D01G132200 chr3B 90.000 90 8 1 1861 1950 242889583 242889495 8.840000e-22 115.0
19 TraesCS4D01G132200 chr3B 82.906 117 13 6 49 161 325882462 325882349 8.910000e-17 99.0
20 TraesCS4D01G132200 chrUn 81.765 340 50 6 159 487 244760951 244761289 1.380000e-69 274.0
21 TraesCS4D01G132200 chrUn 95.122 41 2 0 2340 2380 91675976 91676016 9.030000e-07 65.8
22 TraesCS4D01G132200 chrUn 95.122 41 2 0 2343 2383 441250226 441250186 9.030000e-07 65.8
23 TraesCS4D01G132200 chr3D 80.702 342 50 11 159 487 179287971 179288309 6.460000e-63 252.0
24 TraesCS4D01G132200 chr3A 79.787 376 52 13 159 515 699841406 699841776 6.460000e-63 252.0
25 TraesCS4D01G132200 chr3A 81.423 253 38 6 3600 3851 345872696 345872940 8.540000e-47 198.0
26 TraesCS4D01G132200 chr3A 91.011 89 8 0 1865 1953 663575410 663575322 1.900000e-23 121.0
27 TraesCS4D01G132200 chr2B 83.146 267 34 9 3587 3851 140745225 140745482 2.340000e-57 233.0
28 TraesCS4D01G132200 chr2B 87.500 112 12 1 53 162 391968726 391968615 1.140000e-25 128.0
29 TraesCS4D01G132200 chr1D 82.230 287 36 11 3600 3880 189534005 189534282 2.340000e-57 233.0
30 TraesCS4D01G132200 chr2A 81.944 288 37 10 3600 3880 678005159 678005438 3.030000e-56 230.0
31 TraesCS4D01G132200 chr2A 95.238 42 2 0 3069 3110 682625744 682625703 2.510000e-07 67.6
32 TraesCS4D01G132200 chr1B 82.772 267 35 7 3586 3851 346406544 346406288 1.090000e-55 228.0
33 TraesCS4D01G132200 chr5D 84.360 211 24 7 3615 3824 134471311 134471109 8.540000e-47 198.0
34 TraesCS4D01G132200 chr5D 80.220 273 35 14 3617 3880 183725870 183725608 1.850000e-43 187.0
35 TraesCS4D01G132200 chr2D 81.356 236 35 6 3601 3835 95657049 95656822 2.390000e-42 183.0
36 TraesCS4D01G132200 chr2D 86.607 112 13 1 53 162 323389097 323388986 5.280000e-24 122.0
37 TraesCS4D01G132200 chr2D 85.714 112 14 1 53 162 323963605 323963494 2.460000e-22 117.0
38 TraesCS4D01G132200 chr2D 97.500 40 1 0 2340 2379 7542667 7542706 6.980000e-08 69.4
39 TraesCS4D01G132200 chr6D 87.500 120 13 1 46 163 455166601 455166720 1.890000e-28 137.0
40 TraesCS4D01G132200 chr7D 90.625 96 9 0 1855 1950 597680433 597680528 1.140000e-25 128.0
41 TraesCS4D01G132200 chr7D 93.750 48 2 1 2333 2379 64704722 64704675 1.940000e-08 71.3
42 TraesCS4D01G132200 chr7D 95.349 43 2 0 2330 2372 21475446 21475404 6.980000e-08 69.4
43 TraesCS4D01G132200 chr7B 90.110 91 8 1 1861 1950 698886694 698886784 2.460000e-22 117.0
44 TraesCS4D01G132200 chr7B 89.796 49 4 1 2340 2388 388175870 388175823 1.170000e-05 62.1
45 TraesCS4D01G132200 chr6B 83.168 101 15 1 64 162 316438714 316438814 1.490000e-14 91.6
46 TraesCS4D01G132200 chr7A 85.897 78 11 0 86 163 337854546 337854469 2.490000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G132200 chr4D 119224336 119228230 3894 False 7193.000000 7193 100.000000 1 3895 1 chr4D.!!$F1 3894
1 TraesCS4D01G132200 chr4A 454589337 454592745 3408 False 1494.333333 2366 92.701667 26 3488 3 chr4A.!!$F2 3462
2 TraesCS4D01G132200 chr4B 181427657 181431784 4127 False 1134.000000 2067 89.657000 52 3576 4 chr4B.!!$F2 3524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1818 1.301677 GGAAGCAAGCACGGAAGGAG 61.302 60.0 0.0 0.0 0.0 3.69 F
1663 2508 0.032813 CCTCCATGAACCCTGCCAAT 60.033 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2864 3753 0.178873 TGGTCTTGGGCTTAGGGACT 60.179 55.0 0.0 0.0 46.37 3.85 R
3518 4573 0.446222 CGATGTTTTTCGCCATCCGT 59.554 50.0 0.0 0.0 35.17 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.723172 AGAAGAGGAAGAACATTTGAAGAACAT 59.277 33.333 0.00 0.00 0.00 2.71
34 35 8.378565 AGAGGAAGAACATTTGAAGAACATCTA 58.621 33.333 0.00 0.00 0.00 1.98
83 84 3.375699 AGAGGGGTCTAACAGGTATGTG 58.624 50.000 0.00 0.00 40.39 3.21
331 344 7.026562 TGTTGTTTAGGATGCAATGTTAATCG 58.973 34.615 0.00 0.00 0.00 3.34
332 345 6.130298 TGTTTAGGATGCAATGTTAATCGG 57.870 37.500 0.00 0.00 0.00 4.18
336 349 7.667043 TTAGGATGCAATGTTAATCGGTATC 57.333 36.000 0.00 0.00 0.00 2.24
337 350 5.620206 AGGATGCAATGTTAATCGGTATCA 58.380 37.500 0.00 0.00 0.00 2.15
350 363 1.905449 GGTATCACACGACCGTCTTC 58.095 55.000 0.00 0.00 0.00 2.87
419 432 8.432359 ACAAAAACAAATTGAAGACGAAAGAAC 58.568 29.630 0.00 0.00 0.00 3.01
462 475 1.518367 TCACAAGGGTGGGAAGAAGT 58.482 50.000 0.00 0.00 45.32 3.01
467 480 3.397955 ACAAGGGTGGGAAGAAGTGTAAT 59.602 43.478 0.00 0.00 0.00 1.89
469 482 3.256704 AGGGTGGGAAGAAGTGTAATCA 58.743 45.455 0.00 0.00 0.00 2.57
470 483 3.655777 AGGGTGGGAAGAAGTGTAATCAA 59.344 43.478 0.00 0.00 0.00 2.57
545 1344 8.826546 TTGCTAGTTCTAATAAAGTACGTACG 57.173 34.615 19.49 15.01 31.17 3.67
579 1400 6.537355 TCTTTTGAACTTCAGAGACATCCAT 58.463 36.000 3.88 0.00 0.00 3.41
580 1401 7.000472 TCTTTTGAACTTCAGAGACATCCATT 59.000 34.615 3.88 0.00 0.00 3.16
680 1502 5.796350 AGTTATTAGCCGCAAGTAAACAG 57.204 39.130 0.00 0.00 0.00 3.16
762 1587 2.671914 GCTGAATTTCGCAAGCATCCAA 60.672 45.455 7.90 0.00 37.18 3.53
879 1704 7.972301 TCCAATCTTCTTCTCTTCTTTTCTCT 58.028 34.615 0.00 0.00 0.00 3.10
911 1736 2.203523 TGCTGTGTGCCAAGCCAT 60.204 55.556 0.00 0.00 42.00 4.40
925 1751 4.810720 GCCAAGCCATACCCATACATACAT 60.811 45.833 0.00 0.00 0.00 2.29
935 1761 3.486383 CCATACATACATCCACCCAACC 58.514 50.000 0.00 0.00 0.00 3.77
936 1762 3.486383 CATACATACATCCACCCAACCC 58.514 50.000 0.00 0.00 0.00 4.11
937 1763 1.377690 ACATACATCCACCCAACCCA 58.622 50.000 0.00 0.00 0.00 4.51
992 1818 1.301677 GGAAGCAAGCACGGAAGGAG 61.302 60.000 0.00 0.00 0.00 3.69
1074 1904 3.978723 CTGGGTGCTCTGCGTCTCG 62.979 68.421 0.00 0.00 0.00 4.04
1332 2162 5.674525 TGTCACTGATTTCACACTTCTTCT 58.325 37.500 0.00 0.00 0.00 2.85
1524 2369 4.021925 AGGGGTGCTCACCTTCGC 62.022 66.667 17.57 2.24 46.91 4.70
1588 2433 1.450312 CCCCATCGTCAAGACAGCC 60.450 63.158 0.72 0.00 0.00 4.85
1663 2508 0.032813 CCTCCATGAACCCTGCCAAT 60.033 55.000 0.00 0.00 0.00 3.16
1667 2512 2.244510 TCCATGAACCCTGCCAATGTAT 59.755 45.455 0.00 0.00 0.00 2.29
1682 2527 2.851805 TGTATGCTACGCTCACTCAG 57.148 50.000 0.00 0.00 0.00 3.35
1720 2565 5.549742 TTCCTTTCATTTGACTGCCAATT 57.450 34.783 0.00 0.00 34.23 2.32
1774 2619 1.078143 AGCTCAGTTCGAATGCCCC 60.078 57.895 0.00 0.00 0.00 5.80
1778 2623 2.044946 AGTTCGAATGCCCCAGCC 60.045 61.111 0.00 0.00 38.69 4.85
1784 2629 0.817634 CGAATGCCCCAGCCGATTTA 60.818 55.000 0.00 0.00 38.69 1.40
1787 2632 1.331214 ATGCCCCAGCCGATTTATTG 58.669 50.000 0.00 0.00 38.69 1.90
1866 2711 9.630098 CATTTTGGCATGTCAAATCCTATATAC 57.370 33.333 25.04 0.00 36.63 1.47
1867 2712 8.995027 TTTTGGCATGTCAAATCCTATATACT 57.005 30.769 25.04 0.00 36.63 2.12
1868 2713 8.621532 TTTGGCATGTCAAATCCTATATACTC 57.378 34.615 21.18 0.00 32.39 2.59
1869 2714 6.711277 TGGCATGTCAAATCCTATATACTCC 58.289 40.000 0.00 0.00 0.00 3.85
1870 2715 6.116126 GGCATGTCAAATCCTATATACTCCC 58.884 44.000 0.00 0.00 0.00 4.30
1871 2716 6.069963 GGCATGTCAAATCCTATATACTCCCT 60.070 42.308 0.00 0.00 0.00 4.20
1872 2717 7.044798 GCATGTCAAATCCTATATACTCCCTC 58.955 42.308 0.00 0.00 0.00 4.30
1873 2718 7.093112 GCATGTCAAATCCTATATACTCCCTCT 60.093 40.741 0.00 0.00 0.00 3.69
1874 2719 7.782897 TGTCAAATCCTATATACTCCCTCTG 57.217 40.000 0.00 0.00 0.00 3.35
1875 2720 7.306013 TGTCAAATCCTATATACTCCCTCTGT 58.694 38.462 0.00 0.00 0.00 3.41
1876 2721 8.453681 TGTCAAATCCTATATACTCCCTCTGTA 58.546 37.037 0.00 0.00 0.00 2.74
1877 2722 8.741841 GTCAAATCCTATATACTCCCTCTGTAC 58.258 40.741 0.00 0.00 0.00 2.90
1878 2723 7.894364 TCAAATCCTATATACTCCCTCTGTACC 59.106 40.741 0.00 0.00 0.00 3.34
1879 2724 5.432680 TCCTATATACTCCCTCTGTACCG 57.567 47.826 0.00 0.00 0.00 4.02
1880 2725 4.848660 TCCTATATACTCCCTCTGTACCGT 59.151 45.833 0.00 0.00 0.00 4.83
1881 2726 6.025539 TCCTATATACTCCCTCTGTACCGTA 58.974 44.000 0.00 0.00 0.00 4.02
1882 2727 6.501805 TCCTATATACTCCCTCTGTACCGTAA 59.498 42.308 0.00 0.00 0.00 3.18
1883 2728 7.183475 TCCTATATACTCCCTCTGTACCGTAAT 59.817 40.741 0.00 0.00 0.00 1.89
1884 2729 8.489489 CCTATATACTCCCTCTGTACCGTAATA 58.511 40.741 0.00 0.00 0.00 0.98
1885 2730 9.323985 CTATATACTCCCTCTGTACCGTAATAC 57.676 40.741 0.00 0.00 0.00 1.89
1886 2731 4.516652 ACTCCCTCTGTACCGTAATACT 57.483 45.455 0.00 0.00 0.00 2.12
1887 2732 4.864726 ACTCCCTCTGTACCGTAATACTT 58.135 43.478 0.00 0.00 0.00 2.24
1888 2733 4.643784 ACTCCCTCTGTACCGTAATACTTG 59.356 45.833 0.00 0.00 0.00 3.16
1889 2734 4.603131 TCCCTCTGTACCGTAATACTTGT 58.397 43.478 0.00 0.00 0.00 3.16
1890 2735 5.018809 TCCCTCTGTACCGTAATACTTGTT 58.981 41.667 0.00 0.00 0.00 2.83
1891 2736 5.105635 TCCCTCTGTACCGTAATACTTGTTG 60.106 44.000 0.00 0.00 0.00 3.33
1892 2737 4.565564 CCTCTGTACCGTAATACTTGTTGC 59.434 45.833 0.00 0.00 0.00 4.17
1893 2738 5.395682 TCTGTACCGTAATACTTGTTGCT 57.604 39.130 0.00 0.00 0.00 3.91
1894 2739 5.165676 TCTGTACCGTAATACTTGTTGCTG 58.834 41.667 0.00 0.00 0.00 4.41
1895 2740 4.247258 TGTACCGTAATACTTGTTGCTGG 58.753 43.478 0.00 0.00 0.00 4.85
1896 2741 3.688694 ACCGTAATACTTGTTGCTGGA 57.311 42.857 0.00 0.00 0.00 3.86
1897 2742 3.596214 ACCGTAATACTTGTTGCTGGAG 58.404 45.455 0.00 0.00 0.00 3.86
1898 2743 3.007614 ACCGTAATACTTGTTGCTGGAGT 59.992 43.478 0.00 0.00 0.00 3.85
1899 2744 4.221262 ACCGTAATACTTGTTGCTGGAGTA 59.779 41.667 0.00 0.00 0.00 2.59
1900 2745 4.804139 CCGTAATACTTGTTGCTGGAGTAG 59.196 45.833 0.00 0.00 30.19 2.57
1919 2764 3.620061 CTGAAGTTCAGCTGCTCCA 57.380 52.632 19.55 0.00 37.72 3.86
1920 2765 1.440708 CTGAAGTTCAGCTGCTCCAG 58.559 55.000 19.55 0.43 37.72 3.86
1933 2778 4.558538 CTGCTCCAGCCACAAATATTAC 57.441 45.455 0.00 0.00 41.18 1.89
1934 2779 3.947196 CTGCTCCAGCCACAAATATTACA 59.053 43.478 0.00 0.00 41.18 2.41
1935 2780 3.947196 TGCTCCAGCCACAAATATTACAG 59.053 43.478 0.00 0.00 41.18 2.74
1936 2781 3.947834 GCTCCAGCCACAAATATTACAGT 59.052 43.478 0.00 0.00 34.31 3.55
1937 2782 5.123227 GCTCCAGCCACAAATATTACAGTA 58.877 41.667 0.00 0.00 34.31 2.74
1938 2783 5.007724 GCTCCAGCCACAAATATTACAGTAC 59.992 44.000 0.00 0.00 34.31 2.73
1939 2784 6.056090 TCCAGCCACAAATATTACAGTACA 57.944 37.500 0.00 0.00 0.00 2.90
1940 2785 6.112734 TCCAGCCACAAATATTACAGTACAG 58.887 40.000 0.00 0.00 0.00 2.74
1941 2786 6.070481 TCCAGCCACAAATATTACAGTACAGA 60.070 38.462 0.00 0.00 0.00 3.41
1942 2787 6.258727 CCAGCCACAAATATTACAGTACAGAG 59.741 42.308 0.00 0.00 0.00 3.35
1943 2788 6.258727 CAGCCACAAATATTACAGTACAGAGG 59.741 42.308 0.00 0.00 0.00 3.69
1944 2789 5.527582 GCCACAAATATTACAGTACAGAGGG 59.472 44.000 0.00 0.00 0.00 4.30
1945 2790 6.631766 GCCACAAATATTACAGTACAGAGGGA 60.632 42.308 0.00 0.00 0.00 4.20
1946 2791 6.986817 CCACAAATATTACAGTACAGAGGGAG 59.013 42.308 0.00 0.00 0.00 4.30
1947 2792 7.364762 CCACAAATATTACAGTACAGAGGGAGT 60.365 40.741 0.00 0.00 0.00 3.85
1948 2793 8.692710 CACAAATATTACAGTACAGAGGGAGTA 58.307 37.037 0.00 0.00 0.00 2.59
1962 2807 2.093973 AGGGAGTAGTTCTGAACGCATG 60.094 50.000 14.35 0.00 36.23 4.06
1978 2823 8.376889 TGAACGCATGATTATTCTGCTTATTA 57.623 30.769 0.00 0.00 33.75 0.98
1999 2844 2.226437 AGGAACACGATCATGCAAACAC 59.774 45.455 0.00 0.00 0.00 3.32
2037 2882 4.098914 ACCAACTTGGATGCTTTGTAGA 57.901 40.909 15.14 0.00 40.96 2.59
2038 2883 4.666512 ACCAACTTGGATGCTTTGTAGAT 58.333 39.130 15.14 0.00 40.96 1.98
2115 2960 3.254903 GGGGTTGGAAATGATAATACCGC 59.745 47.826 0.00 0.00 0.00 5.68
2286 3138 1.340248 CCACTGGACACGTCACTAGTT 59.660 52.381 0.00 0.00 0.00 2.24
2337 3189 4.019681 TCGTCATTTCCATGTTACTCCCTT 60.020 41.667 0.00 0.00 0.00 3.95
2339 3191 5.253330 GTCATTTCCATGTTACTCCCTTGA 58.747 41.667 0.00 0.00 0.00 3.02
2340 3192 5.710099 GTCATTTCCATGTTACTCCCTTGAA 59.290 40.000 0.00 0.00 0.00 2.69
2342 3194 3.328382 TCCATGTTACTCCCTTGAACG 57.672 47.619 0.00 0.00 0.00 3.95
2343 3195 1.737793 CCATGTTACTCCCTTGAACGC 59.262 52.381 0.00 0.00 0.00 4.84
2344 3196 2.615493 CCATGTTACTCCCTTGAACGCT 60.615 50.000 0.00 0.00 0.00 5.07
2345 3197 2.450609 TGTTACTCCCTTGAACGCTC 57.549 50.000 0.00 0.00 0.00 5.03
2346 3198 1.968493 TGTTACTCCCTTGAACGCTCT 59.032 47.619 0.00 0.00 0.00 4.09
2347 3199 2.367567 TGTTACTCCCTTGAACGCTCTT 59.632 45.455 0.00 0.00 0.00 2.85
2348 3200 3.575256 TGTTACTCCCTTGAACGCTCTTA 59.425 43.478 0.00 0.00 0.00 2.10
2372 3226 0.186386 ATGGGACGGAGGGAGTAGAG 59.814 60.000 0.00 0.00 0.00 2.43
2493 3347 6.091169 AGTTGTGTGCTTCTTTCAATTTGTTG 59.909 34.615 0.00 0.00 0.00 3.33
2579 3438 8.276325 GGACGATGCTTTAGTACTGAAATTATG 58.724 37.037 5.39 0.00 0.00 1.90
2616 3475 5.557576 TGCCATTGCTCATCTAATAGACT 57.442 39.130 0.00 0.00 38.71 3.24
2617 3476 6.670695 TGCCATTGCTCATCTAATAGACTA 57.329 37.500 0.00 0.00 38.71 2.59
2618 3477 7.066307 TGCCATTGCTCATCTAATAGACTAA 57.934 36.000 0.00 0.00 38.71 2.24
2619 3478 7.683578 TGCCATTGCTCATCTAATAGACTAAT 58.316 34.615 0.00 0.00 38.71 1.73
2620 3479 8.815912 TGCCATTGCTCATCTAATAGACTAATA 58.184 33.333 0.00 0.00 38.71 0.98
2664 3553 6.006449 AGTTAAGTTGATGCTCACTTGGAAT 58.994 36.000 0.00 0.00 0.00 3.01
2665 3554 7.119699 CAGTTAAGTTGATGCTCACTTGGAATA 59.880 37.037 0.00 0.00 0.00 1.75
2666 3555 7.335422 AGTTAAGTTGATGCTCACTTGGAATAG 59.665 37.037 0.00 0.00 0.00 1.73
2667 3556 3.944015 AGTTGATGCTCACTTGGAATAGC 59.056 43.478 0.00 0.00 35.51 2.97
2671 3560 2.646930 TGCTCACTTGGAATAGCATGG 58.353 47.619 0.00 0.00 39.92 3.66
2672 3561 2.239402 TGCTCACTTGGAATAGCATGGA 59.761 45.455 0.00 0.00 39.92 3.41
2673 3562 3.282021 GCTCACTTGGAATAGCATGGAA 58.718 45.455 0.00 0.00 35.05 3.53
2674 3563 3.696051 GCTCACTTGGAATAGCATGGAAA 59.304 43.478 0.00 0.00 35.05 3.13
2675 3564 4.340381 GCTCACTTGGAATAGCATGGAAAT 59.660 41.667 0.00 0.00 35.05 2.17
2676 3565 5.506982 GCTCACTTGGAATAGCATGGAAATC 60.507 44.000 0.00 0.00 35.05 2.17
2677 3566 4.889409 TCACTTGGAATAGCATGGAAATCC 59.111 41.667 0.00 0.00 0.00 3.01
2678 3567 4.891756 CACTTGGAATAGCATGGAAATCCT 59.108 41.667 0.44 0.00 36.82 3.24
2679 3568 5.361857 CACTTGGAATAGCATGGAAATCCTT 59.638 40.000 0.44 0.00 36.82 3.36
2680 3569 5.361857 ACTTGGAATAGCATGGAAATCCTTG 59.638 40.000 10.21 10.21 42.28 3.61
2681 3570 4.870636 TGGAATAGCATGGAAATCCTTGT 58.129 39.130 14.62 6.48 41.65 3.16
2682 3571 4.889409 TGGAATAGCATGGAAATCCTTGTC 59.111 41.667 14.62 8.61 41.65 3.18
2683 3572 5.136105 GGAATAGCATGGAAATCCTTGTCT 58.864 41.667 14.62 13.70 41.65 3.41
2684 3573 5.595952 GGAATAGCATGGAAATCCTTGTCTT 59.404 40.000 14.62 7.61 41.65 3.01
2685 3574 6.238869 GGAATAGCATGGAAATCCTTGTCTTC 60.239 42.308 14.62 13.50 41.65 2.87
2686 3575 4.313020 AGCATGGAAATCCTTGTCTTCT 57.687 40.909 14.62 3.33 41.65 2.85
2687 3576 4.015084 AGCATGGAAATCCTTGTCTTCTG 58.985 43.478 14.62 0.00 41.65 3.02
2688 3577 4.012374 GCATGGAAATCCTTGTCTTCTGA 58.988 43.478 14.62 0.00 41.65 3.27
2720 3609 5.055265 TGGTTTCCTGTTAACTGATTCCA 57.945 39.130 13.56 13.22 0.00 3.53
2814 3703 1.691976 TGTACTGGATATGCCCCTTCG 59.308 52.381 0.00 0.00 34.97 3.79
2866 3755 4.619227 CGTGTTCCCGCCACCAGT 62.619 66.667 0.00 0.00 0.00 4.00
2956 3845 3.210227 TGAAGAAGCGAACATGGTTTGA 58.790 40.909 0.00 0.00 0.00 2.69
3047 3940 8.141835 TCATTTATCAGTCATTCATGTTACCG 57.858 34.615 0.00 0.00 0.00 4.02
3052 3945 3.993736 CAGTCATTCATGTTACCGTGTGA 59.006 43.478 0.00 0.00 0.00 3.58
3236 4130 3.788333 TTCATGCTAATGCCAAGCTTC 57.212 42.857 0.00 0.00 40.73 3.86
3264 4159 8.863872 TTATTTTGAGGACCTTTTTCTCTAGG 57.136 34.615 0.00 0.00 37.56 3.02
3267 4162 2.506231 GAGGACCTTTTTCTCTAGGGGG 59.494 54.545 0.00 0.00 35.79 5.40
3320 4368 2.562298 CCTGCCATGCCTTTCAAAACTA 59.438 45.455 0.00 0.00 0.00 2.24
3385 4433 5.220835 CCAAAGTTTGCCCAAAAGACAATTC 60.221 40.000 10.25 0.00 31.33 2.17
3419 4467 1.537202 GTTGTCAAATTGAGCTCCGCT 59.463 47.619 12.15 0.00 43.88 5.52
3425 4473 1.871080 AATTGAGCTCCGCTTATCCG 58.129 50.000 12.15 0.00 39.88 4.18
3435 4483 2.670401 CGCTTATCCGGATTTGCTTC 57.330 50.000 24.71 5.59 0.00 3.86
3463 4511 4.963373 TCAAGTTTATTGTTCTCGTCCCA 58.037 39.130 0.00 0.00 0.00 4.37
3507 4562 2.633488 GGTCCAAGGTGTAGAAGCATC 58.367 52.381 0.00 0.00 0.00 3.91
3510 4565 2.094182 TCCAAGGTGTAGAAGCATCGAC 60.094 50.000 0.00 0.00 0.00 4.20
3517 4572 3.430895 GTGTAGAAGCATCGACGGAAAAA 59.569 43.478 0.00 0.00 34.27 1.94
3537 4592 0.446222 ACGGATGGCGAAAAACATCG 59.554 50.000 0.00 0.00 43.34 3.84
3540 4595 2.413502 CGGATGGCGAAAAACATCGAAA 60.414 45.455 0.24 0.00 45.48 3.46
3543 4598 4.625311 GGATGGCGAAAAACATCGAAATTT 59.375 37.500 0.24 0.00 45.48 1.82
3544 4599 4.963237 TGGCGAAAAACATCGAAATTTG 57.037 36.364 0.00 0.00 45.48 2.32
3545 4600 4.611943 TGGCGAAAAACATCGAAATTTGA 58.388 34.783 0.00 0.00 45.48 2.69
3546 4601 5.226396 TGGCGAAAAACATCGAAATTTGAT 58.774 33.333 0.00 0.00 45.48 2.57
3547 4602 5.118357 TGGCGAAAAACATCGAAATTTGATG 59.882 36.000 18.91 18.91 45.48 3.07
3548 4603 5.344665 GGCGAAAAACATCGAAATTTGATGA 59.655 36.000 25.38 10.64 44.76 2.92
3550 4605 7.411804 GGCGAAAAACATCGAAATTTGATGATT 60.412 33.333 25.38 18.35 44.76 2.57
3552 4607 8.103924 CGAAAAACATCGAAATTTGATGATTCC 58.896 33.333 25.38 15.15 44.76 3.01
3553 4608 8.830201 AAAAACATCGAAATTTGATGATTCCA 57.170 26.923 25.38 0.00 44.76 3.53
3554 4609 9.439500 AAAAACATCGAAATTTGATGATTCCAT 57.561 25.926 25.38 10.30 44.76 3.41
3576 4631 6.316390 CCATAAATCCTCTAAAAACGTGAGCT 59.684 38.462 0.00 0.00 0.00 4.09
3577 4632 5.864628 AAATCCTCTAAAAACGTGAGCTC 57.135 39.130 6.82 6.82 0.00 4.09
3578 4633 4.537135 ATCCTCTAAAAACGTGAGCTCA 57.463 40.909 13.74 13.74 0.00 4.26
3579 4634 4.330944 TCCTCTAAAAACGTGAGCTCAA 57.669 40.909 20.19 0.00 0.00 3.02
3580 4635 4.699637 TCCTCTAAAAACGTGAGCTCAAA 58.300 39.130 20.19 0.00 0.00 2.69
3581 4636 4.510340 TCCTCTAAAAACGTGAGCTCAAAC 59.490 41.667 20.19 6.08 0.00 2.93
3582 4637 4.272504 CCTCTAAAAACGTGAGCTCAAACA 59.727 41.667 20.19 0.00 0.00 2.83
3583 4638 5.049405 CCTCTAAAAACGTGAGCTCAAACAT 60.049 40.000 20.19 2.50 0.00 2.71
3584 4639 5.747565 TCTAAAAACGTGAGCTCAAACATG 58.252 37.500 20.19 8.69 0.00 3.21
3585 4640 4.370364 AAAAACGTGAGCTCAAACATGT 57.630 36.364 20.19 9.34 37.78 3.21
3586 4641 5.493133 AAAAACGTGAGCTCAAACATGTA 57.507 34.783 20.19 0.00 35.58 2.29
3587 4642 4.732285 AAACGTGAGCTCAAACATGTAG 57.268 40.909 20.19 5.22 35.58 2.74
3588 4643 2.688507 ACGTGAGCTCAAACATGTAGG 58.311 47.619 20.19 1.04 34.99 3.18
3589 4644 1.394917 CGTGAGCTCAAACATGTAGGC 59.605 52.381 20.19 0.35 0.00 3.93
3590 4645 1.740025 GTGAGCTCAAACATGTAGGCC 59.260 52.381 20.19 0.00 0.00 5.19
3591 4646 1.630369 TGAGCTCAAACATGTAGGCCT 59.370 47.619 15.67 11.78 0.00 5.19
3592 4647 2.837591 TGAGCTCAAACATGTAGGCCTA 59.162 45.455 15.67 8.91 0.00 3.93
3593 4648 3.198872 GAGCTCAAACATGTAGGCCTAC 58.801 50.000 32.37 32.37 36.63 3.18
3594 4649 2.840651 AGCTCAAACATGTAGGCCTACT 59.159 45.455 36.49 22.58 37.00 2.57
3595 4650 3.264450 AGCTCAAACATGTAGGCCTACTT 59.736 43.478 36.49 29.65 37.00 2.24
3596 4651 4.010349 GCTCAAACATGTAGGCCTACTTT 58.990 43.478 36.49 27.00 37.00 2.66
3597 4652 4.142600 GCTCAAACATGTAGGCCTACTTTG 60.143 45.833 36.49 33.62 37.00 2.77
3598 4653 4.331968 TCAAACATGTAGGCCTACTTTGG 58.668 43.478 33.79 25.44 37.00 3.28
3599 4654 4.079253 CAAACATGTAGGCCTACTTTGGT 58.921 43.478 36.49 29.50 37.00 3.67
3600 4655 4.382386 AACATGTAGGCCTACTTTGGTT 57.618 40.909 36.49 29.21 37.00 3.67
3601 4656 4.382386 ACATGTAGGCCTACTTTGGTTT 57.618 40.909 36.49 18.73 37.00 3.27
3602 4657 4.079253 ACATGTAGGCCTACTTTGGTTTG 58.921 43.478 36.49 23.99 37.00 2.93
3603 4658 4.202524 ACATGTAGGCCTACTTTGGTTTGA 60.203 41.667 36.49 18.29 37.00 2.69
3604 4659 4.440826 TGTAGGCCTACTTTGGTTTGAA 57.559 40.909 36.49 15.06 37.00 2.69
3605 4660 4.394729 TGTAGGCCTACTTTGGTTTGAAG 58.605 43.478 36.49 0.00 37.00 3.02
3606 4661 2.876581 AGGCCTACTTTGGTTTGAAGG 58.123 47.619 1.29 0.00 0.00 3.46
3607 4662 1.893137 GGCCTACTTTGGTTTGAAGGG 59.107 52.381 0.00 0.00 0.00 3.95
3608 4663 2.490168 GGCCTACTTTGGTTTGAAGGGA 60.490 50.000 0.00 0.00 0.00 4.20
3609 4664 3.431415 GCCTACTTTGGTTTGAAGGGAT 58.569 45.455 0.00 0.00 0.00 3.85
3610 4665 3.832490 GCCTACTTTGGTTTGAAGGGATT 59.168 43.478 0.00 0.00 0.00 3.01
3611 4666 4.283467 GCCTACTTTGGTTTGAAGGGATTT 59.717 41.667 0.00 0.00 0.00 2.17
3612 4667 5.221641 GCCTACTTTGGTTTGAAGGGATTTT 60.222 40.000 0.00 0.00 0.00 1.82
3613 4668 6.223120 CCTACTTTGGTTTGAAGGGATTTTG 58.777 40.000 0.00 0.00 0.00 2.44
3614 4669 5.692115 ACTTTGGTTTGAAGGGATTTTGT 57.308 34.783 0.00 0.00 0.00 2.83
3615 4670 6.800072 ACTTTGGTTTGAAGGGATTTTGTA 57.200 33.333 0.00 0.00 0.00 2.41
3616 4671 6.816136 ACTTTGGTTTGAAGGGATTTTGTAG 58.184 36.000 0.00 0.00 0.00 2.74
3617 4672 5.799827 TTGGTTTGAAGGGATTTTGTAGG 57.200 39.130 0.00 0.00 0.00 3.18
3618 4673 5.068215 TGGTTTGAAGGGATTTTGTAGGA 57.932 39.130 0.00 0.00 0.00 2.94
3619 4674 5.650283 TGGTTTGAAGGGATTTTGTAGGAT 58.350 37.500 0.00 0.00 0.00 3.24
3620 4675 6.795590 TGGTTTGAAGGGATTTTGTAGGATA 58.204 36.000 0.00 0.00 0.00 2.59
3621 4676 6.889722 TGGTTTGAAGGGATTTTGTAGGATAG 59.110 38.462 0.00 0.00 0.00 2.08
3622 4677 6.321435 GGTTTGAAGGGATTTTGTAGGATAGG 59.679 42.308 0.00 0.00 0.00 2.57
3623 4678 6.901615 TTGAAGGGATTTTGTAGGATAGGA 57.098 37.500 0.00 0.00 0.00 2.94
3624 4679 7.465900 TTGAAGGGATTTTGTAGGATAGGAT 57.534 36.000 0.00 0.00 0.00 3.24
3625 4680 7.465900 TGAAGGGATTTTGTAGGATAGGATT 57.534 36.000 0.00 0.00 0.00 3.01
3626 4681 7.882755 TGAAGGGATTTTGTAGGATAGGATTT 58.117 34.615 0.00 0.00 0.00 2.17
3627 4682 7.998964 TGAAGGGATTTTGTAGGATAGGATTTC 59.001 37.037 0.00 0.00 0.00 2.17
3628 4683 7.713704 AGGGATTTTGTAGGATAGGATTTCT 57.286 36.000 0.00 0.00 0.00 2.52
3629 4684 8.814448 AGGGATTTTGTAGGATAGGATTTCTA 57.186 34.615 0.00 0.00 0.00 2.10
3630 4685 9.411848 AGGGATTTTGTAGGATAGGATTTCTAT 57.588 33.333 0.00 0.00 41.14 1.98
3657 4712 6.901081 AAGAATTCCTTTACTGTCCTTTGG 57.099 37.500 0.65 0.00 0.00 3.28
3658 4713 5.953571 AGAATTCCTTTACTGTCCTTTGGT 58.046 37.500 0.65 0.00 0.00 3.67
3659 4714 6.373759 AGAATTCCTTTACTGTCCTTTGGTT 58.626 36.000 0.65 0.00 0.00 3.67
3660 4715 6.839134 AGAATTCCTTTACTGTCCTTTGGTTT 59.161 34.615 0.65 0.00 0.00 3.27
3661 4716 7.344612 AGAATTCCTTTACTGTCCTTTGGTTTT 59.655 33.333 0.65 0.00 0.00 2.43
3662 4717 6.860790 TTCCTTTACTGTCCTTTGGTTTTT 57.139 33.333 0.00 0.00 0.00 1.94
3663 4718 7.957992 TTCCTTTACTGTCCTTTGGTTTTTA 57.042 32.000 0.00 0.00 0.00 1.52
3664 4719 7.576861 TCCTTTACTGTCCTTTGGTTTTTAG 57.423 36.000 0.00 0.00 0.00 1.85
3665 4720 7.348033 TCCTTTACTGTCCTTTGGTTTTTAGA 58.652 34.615 0.00 0.00 0.00 2.10
3666 4721 7.835181 TCCTTTACTGTCCTTTGGTTTTTAGAA 59.165 33.333 0.00 0.00 0.00 2.10
3667 4722 8.471609 CCTTTACTGTCCTTTGGTTTTTAGAAA 58.528 33.333 0.00 0.00 0.00 2.52
3671 4726 8.990163 ACTGTCCTTTGGTTTTTAGAAATAGA 57.010 30.769 0.00 0.00 0.00 1.98
3672 4727 9.416284 ACTGTCCTTTGGTTTTTAGAAATAGAA 57.584 29.630 0.00 0.00 0.00 2.10
3709 4764 8.094284 TGGAGAGAAATTCTTCATATCCTTCA 57.906 34.615 0.00 0.00 36.46 3.02
3710 4765 7.989741 TGGAGAGAAATTCTTCATATCCTTCAC 59.010 37.037 0.00 0.00 36.46 3.18
3711 4766 7.989741 GGAGAGAAATTCTTCATATCCTTCACA 59.010 37.037 0.00 0.00 35.87 3.58
3712 4767 9.558396 GAGAGAAATTCTTCATATCCTTCACAT 57.442 33.333 0.00 0.00 35.87 3.21
3713 4768 9.917887 AGAGAAATTCTTCATATCCTTCACATT 57.082 29.630 0.00 0.00 33.64 2.71
3720 4775 9.565090 TTCTTCATATCCTTCACATTTCATAGG 57.435 33.333 0.00 0.00 0.00 2.57
3721 4776 8.937835 TCTTCATATCCTTCACATTTCATAGGA 58.062 33.333 0.00 0.00 39.21 2.94
3722 4777 9.565090 CTTCATATCCTTCACATTTCATAGGAA 57.435 33.333 0.00 0.00 38.42 3.36
3723 4778 9.919416 TTCATATCCTTCACATTTCATAGGAAA 57.081 29.630 4.85 4.85 46.36 3.13
3724 4779 9.919416 TCATATCCTTCACATTTCATAGGAAAA 57.081 29.630 6.65 0.00 45.52 2.29
3783 4838 8.674263 ATGATATGAACCAAAGAACATCTCTC 57.326 34.615 0.00 0.00 31.02 3.20
3784 4839 7.623630 TGATATGAACCAAAGAACATCTCTCA 58.376 34.615 0.00 0.00 31.02 3.27
3785 4840 7.767659 TGATATGAACCAAAGAACATCTCTCAG 59.232 37.037 0.00 0.00 31.02 3.35
3786 4841 5.551305 TGAACCAAAGAACATCTCTCAGA 57.449 39.130 0.00 0.00 31.02 3.27
3787 4842 5.300752 TGAACCAAAGAACATCTCTCAGAC 58.699 41.667 0.00 0.00 31.02 3.51
3788 4843 5.070981 TGAACCAAAGAACATCTCTCAGACT 59.929 40.000 0.00 0.00 31.02 3.24
3789 4844 5.146010 ACCAAAGAACATCTCTCAGACTC 57.854 43.478 0.00 0.00 31.02 3.36
3790 4845 4.590647 ACCAAAGAACATCTCTCAGACTCA 59.409 41.667 0.00 0.00 31.02 3.41
3791 4846 5.248020 ACCAAAGAACATCTCTCAGACTCAT 59.752 40.000 0.00 0.00 31.02 2.90
3792 4847 5.811613 CCAAAGAACATCTCTCAGACTCATC 59.188 44.000 0.00 0.00 31.02 2.92
3793 4848 5.596836 AAGAACATCTCTCAGACTCATCC 57.403 43.478 0.00 0.00 31.02 3.51
3794 4849 4.608269 AGAACATCTCTCAGACTCATCCA 58.392 43.478 0.00 0.00 0.00 3.41
3795 4850 5.022122 AGAACATCTCTCAGACTCATCCAA 58.978 41.667 0.00 0.00 0.00 3.53
3796 4851 5.662208 AGAACATCTCTCAGACTCATCCAAT 59.338 40.000 0.00 0.00 0.00 3.16
3797 4852 5.954153 ACATCTCTCAGACTCATCCAATT 57.046 39.130 0.00 0.00 0.00 2.32
3798 4853 5.916318 ACATCTCTCAGACTCATCCAATTC 58.084 41.667 0.00 0.00 0.00 2.17
3799 4854 5.163322 ACATCTCTCAGACTCATCCAATTCC 60.163 44.000 0.00 0.00 0.00 3.01
3800 4855 4.618635 TCTCTCAGACTCATCCAATTCCT 58.381 43.478 0.00 0.00 0.00 3.36
3801 4856 5.770919 TCTCTCAGACTCATCCAATTCCTA 58.229 41.667 0.00 0.00 0.00 2.94
3802 4857 6.380414 TCTCTCAGACTCATCCAATTCCTAT 58.620 40.000 0.00 0.00 0.00 2.57
3803 4858 6.843333 TCTCTCAGACTCATCCAATTCCTATT 59.157 38.462 0.00 0.00 0.00 1.73
3804 4859 7.015098 TCTCTCAGACTCATCCAATTCCTATTC 59.985 40.741 0.00 0.00 0.00 1.75
3805 4860 6.612863 TCTCAGACTCATCCAATTCCTATTCA 59.387 38.462 0.00 0.00 0.00 2.57
3806 4861 7.291885 TCTCAGACTCATCCAATTCCTATTCAT 59.708 37.037 0.00 0.00 0.00 2.57
3807 4862 8.496534 TCAGACTCATCCAATTCCTATTCATA 57.503 34.615 0.00 0.00 0.00 2.15
3808 4863 8.591940 TCAGACTCATCCAATTCCTATTCATAG 58.408 37.037 0.00 0.00 0.00 2.23
3809 4864 8.591940 CAGACTCATCCAATTCCTATTCATAGA 58.408 37.037 0.00 0.00 32.05 1.98
3810 4865 9.163894 AGACTCATCCAATTCCTATTCATAGAA 57.836 33.333 0.00 0.00 32.05 2.10
3811 4866 9.784531 GACTCATCCAATTCCTATTCATAGAAA 57.215 33.333 0.00 0.00 32.05 2.52
3821 4876 9.803507 ATTCCTATTCATAGAAATTGAGATGCA 57.196 29.630 0.00 0.00 32.05 3.96
3822 4877 9.803507 TTCCTATTCATAGAAATTGAGATGCAT 57.196 29.630 0.00 0.00 32.05 3.96
3823 4878 9.227777 TCCTATTCATAGAAATTGAGATGCATG 57.772 33.333 2.46 0.00 32.05 4.06
3824 4879 9.227777 CCTATTCATAGAAATTGAGATGCATGA 57.772 33.333 2.46 0.00 32.05 3.07
3828 4883 9.961265 TTCATAGAAATTGAGATGCATGAAATC 57.039 29.630 2.46 0.00 30.50 2.17
3829 4884 9.350951 TCATAGAAATTGAGATGCATGAAATCT 57.649 29.630 2.46 10.24 37.09 2.40
3830 4885 9.967346 CATAGAAATTGAGATGCATGAAATCTT 57.033 29.630 2.46 0.00 34.50 2.40
3838 4893 9.797556 TTGAGATGCATGAAATCTTATTTCTTG 57.202 29.630 2.46 17.41 34.50 3.02
3847 4902 8.816640 TGAAATCTTATTTCTTGCAAGTTTCC 57.183 30.769 25.19 10.39 0.00 3.13
3848 4903 8.641541 TGAAATCTTATTTCTTGCAAGTTTCCT 58.358 29.630 25.19 9.97 0.00 3.36
3852 4907 8.862325 TCTTATTTCTTGCAAGTTTCCTATGA 57.138 30.769 25.19 14.27 0.00 2.15
3853 4908 9.466497 TCTTATTTCTTGCAAGTTTCCTATGAT 57.534 29.630 25.19 9.82 0.00 2.45
3858 4913 8.806429 TTCTTGCAAGTTTCCTATGATAATCA 57.194 30.769 25.19 0.00 0.00 2.57
3859 4914 8.985315 TCTTGCAAGTTTCCTATGATAATCAT 57.015 30.769 25.19 0.00 40.72 2.45
3862 4917 8.621532 TGCAAGTTTCCTATGATAATCATACC 57.378 34.615 0.00 0.00 38.26 2.73
3863 4918 7.665559 TGCAAGTTTCCTATGATAATCATACCC 59.334 37.037 0.00 0.00 38.26 3.69
3864 4919 7.885399 GCAAGTTTCCTATGATAATCATACCCT 59.115 37.037 0.00 0.00 38.26 4.34
3879 4934 6.509523 TCATACCCTATAAACCAAAGGAGG 57.490 41.667 0.00 0.00 31.64 4.30
3880 4935 5.974370 TCATACCCTATAAACCAAAGGAGGT 59.026 40.000 0.00 0.00 45.91 3.85
3890 4945 4.790718 ACCAAAGGAGGTTGTAGAGTTT 57.209 40.909 0.00 0.00 39.34 2.66
3891 4946 4.715713 ACCAAAGGAGGTTGTAGAGTTTC 58.284 43.478 0.00 0.00 39.34 2.78
3892 4947 4.412528 ACCAAAGGAGGTTGTAGAGTTTCT 59.587 41.667 0.00 0.00 39.34 2.52
3893 4948 4.757149 CCAAAGGAGGTTGTAGAGTTTCTG 59.243 45.833 0.00 0.00 0.00 3.02
3894 4949 5.368989 CAAAGGAGGTTGTAGAGTTTCTGT 58.631 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.627123 TCTTCAAATGTTCTTCCTCTTCTTTTA 57.373 29.630 0.00 0.00 0.00 1.52
2 3 8.525290 TCTTCAAATGTTCTTCCTCTTCTTTT 57.475 30.769 0.00 0.00 0.00 2.27
3 4 8.409371 GTTCTTCAAATGTTCTTCCTCTTCTTT 58.591 33.333 0.00 0.00 0.00 2.52
4 5 7.557719 TGTTCTTCAAATGTTCTTCCTCTTCTT 59.442 33.333 0.00 0.00 0.00 2.52
5 6 7.056635 TGTTCTTCAAATGTTCTTCCTCTTCT 58.943 34.615 0.00 0.00 0.00 2.85
6 7 7.264373 TGTTCTTCAAATGTTCTTCCTCTTC 57.736 36.000 0.00 0.00 0.00 2.87
7 8 7.723172 AGATGTTCTTCAAATGTTCTTCCTCTT 59.277 33.333 0.00 0.00 0.00 2.85
8 9 7.230027 AGATGTTCTTCAAATGTTCTTCCTCT 58.770 34.615 0.00 0.00 0.00 3.69
9 10 7.446001 AGATGTTCTTCAAATGTTCTTCCTC 57.554 36.000 0.00 0.00 0.00 3.71
10 11 8.378565 TCTAGATGTTCTTCAAATGTTCTTCCT 58.621 33.333 0.00 0.00 0.00 3.36
11 12 8.553459 TCTAGATGTTCTTCAAATGTTCTTCC 57.447 34.615 0.00 0.00 0.00 3.46
31 32 4.844085 TGAACCTGGGAGAACATTTCTAGA 59.156 41.667 0.00 0.00 40.87 2.43
34 35 4.664688 ATGAACCTGGGAGAACATTTCT 57.335 40.909 0.00 0.00 44.21 2.52
46 47 4.166144 ACCCCTCTAACATAATGAACCTGG 59.834 45.833 0.00 0.00 0.00 4.45
47 48 5.131142 AGACCCCTCTAACATAATGAACCTG 59.869 44.000 0.00 0.00 0.00 4.00
83 84 7.951347 AATATGAAGAATCTGAATATGCCCC 57.049 36.000 0.00 0.00 0.00 5.80
115 118 9.926158 TGCAAATGATTTACATATGAAAGTTGT 57.074 25.926 10.38 0.00 38.38 3.32
128 131 6.781138 TGTAACTCGGATGCAAATGATTTAC 58.219 36.000 13.78 13.78 31.18 2.01
134 137 5.490139 AATCTGTAACTCGGATGCAAATG 57.510 39.130 0.00 0.00 40.87 2.32
139 142 8.827677 ACTTAAAATAATCTGTAACTCGGATGC 58.172 33.333 0.00 0.00 40.87 3.91
262 268 7.842525 GTGAAACAACATTGATTCTACACAG 57.157 36.000 13.65 0.00 39.71 3.66
307 320 6.472163 CCGATTAACATTGCATCCTAAACAAC 59.528 38.462 0.00 0.00 0.00 3.32
323 336 3.772932 GGTCGTGTGATACCGATTAACA 58.227 45.455 0.00 0.00 35.30 2.41
331 344 1.468736 GGAAGACGGTCGTGTGATACC 60.469 57.143 0.16 0.00 0.00 2.73
332 345 1.471684 AGGAAGACGGTCGTGTGATAC 59.528 52.381 0.16 0.00 0.00 2.24
336 349 1.137513 GAAAGGAAGACGGTCGTGTG 58.862 55.000 0.16 0.00 0.00 3.82
337 350 0.318445 CGAAAGGAAGACGGTCGTGT 60.318 55.000 0.16 0.00 0.00 4.49
419 432 5.072055 TGAACATGCATGGTTATAGATGGG 58.928 41.667 29.41 0.88 0.00 4.00
462 475 9.725019 AACATCTTATCAGTCTTGTTGATTACA 57.275 29.630 0.00 0.00 36.68 2.41
467 480 8.675705 TTTCAACATCTTATCAGTCTTGTTGA 57.324 30.769 11.12 11.12 41.38 3.18
521 534 7.065803 ACCGTACGTACTTTATTAGAACTAGCA 59.934 37.037 22.55 0.00 0.00 3.49
656 1478 6.349033 CCTGTTTACTTGCGGCTAATAACTTT 60.349 38.462 0.00 0.00 0.00 2.66
657 1479 5.123344 CCTGTTTACTTGCGGCTAATAACTT 59.877 40.000 0.00 0.00 0.00 2.66
680 1502 1.408340 GCTAGGAAACCGGAGTACTCC 59.592 57.143 29.18 29.18 46.18 3.85
741 1566 1.135315 TGGATGCTTGCGAAATTCAGC 60.135 47.619 0.00 0.00 0.00 4.26
794 1619 2.281208 CGCCAACAGAACCCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
879 1704 4.333649 CACACAGCACAAGAGAAAGAGAAA 59.666 41.667 0.00 0.00 0.00 2.52
911 1736 3.942926 TGGGTGGATGTATGTATGGGTA 58.057 45.455 0.00 0.00 0.00 3.69
925 1751 3.503839 GGTGGTGGGTTGGGTGGA 61.504 66.667 0.00 0.00 0.00 4.02
935 1761 1.228521 TGGCAGTGATTGGTGGTGG 60.229 57.895 0.00 0.00 0.00 4.61
936 1762 1.870055 GCTGGCAGTGATTGGTGGTG 61.870 60.000 17.16 0.00 0.00 4.17
937 1763 1.604593 GCTGGCAGTGATTGGTGGT 60.605 57.895 17.16 0.00 0.00 4.16
1332 2162 3.008594 TCTGATTTAGTTTGGCGAGGGAA 59.991 43.478 0.00 0.00 0.00 3.97
1524 2369 1.002134 AGGACGGCAAAGGTGATGG 60.002 57.895 0.00 0.00 0.00 3.51
1588 2433 1.142748 GGTGGAGACGGAGAGCATG 59.857 63.158 0.00 0.00 0.00 4.06
1720 2565 3.096092 GGGTTGCAGTTCCATGGATAAA 58.904 45.455 17.06 0.00 0.00 1.40
1762 2607 3.508840 CGGCTGGGGCATTCGAAC 61.509 66.667 0.00 0.00 40.87 3.95
1771 2616 3.885724 AAAACAATAAATCGGCTGGGG 57.114 42.857 0.00 0.00 0.00 4.96
1866 2711 4.643784 ACAAGTATTACGGTACAGAGGGAG 59.356 45.833 0.00 0.00 0.00 4.30
1867 2712 4.603131 ACAAGTATTACGGTACAGAGGGA 58.397 43.478 0.00 0.00 0.00 4.20
1868 2713 4.996788 ACAAGTATTACGGTACAGAGGG 57.003 45.455 0.00 0.00 0.00 4.30
1869 2714 4.565564 GCAACAAGTATTACGGTACAGAGG 59.434 45.833 0.00 0.00 0.00 3.69
1870 2715 5.288712 CAGCAACAAGTATTACGGTACAGAG 59.711 44.000 0.00 0.00 0.00 3.35
1871 2716 5.165676 CAGCAACAAGTATTACGGTACAGA 58.834 41.667 0.00 0.00 0.00 3.41
1872 2717 4.328983 CCAGCAACAAGTATTACGGTACAG 59.671 45.833 0.00 0.00 0.00 2.74
1873 2718 4.021280 TCCAGCAACAAGTATTACGGTACA 60.021 41.667 0.00 0.00 0.00 2.90
1874 2719 4.497300 TCCAGCAACAAGTATTACGGTAC 58.503 43.478 0.00 0.00 0.00 3.34
1875 2720 4.221262 ACTCCAGCAACAAGTATTACGGTA 59.779 41.667 0.00 0.00 0.00 4.02
1876 2721 3.007614 ACTCCAGCAACAAGTATTACGGT 59.992 43.478 0.00 0.00 0.00 4.83
1877 2722 3.596214 ACTCCAGCAACAAGTATTACGG 58.404 45.455 0.00 0.00 0.00 4.02
1878 2723 5.950965 CTACTCCAGCAACAAGTATTACG 57.049 43.478 0.00 0.00 0.00 3.18
1901 2746 1.440708 CTGGAGCAGCTGAACTTCAG 58.559 55.000 20.43 16.13 46.90 3.02
1902 2747 3.620061 CTGGAGCAGCTGAACTTCA 57.380 52.632 20.43 10.09 0.00 3.02
1912 2757 3.947196 TGTAATATTTGTGGCTGGAGCAG 59.053 43.478 0.20 0.00 44.36 4.24
1913 2758 3.947196 CTGTAATATTTGTGGCTGGAGCA 59.053 43.478 0.20 0.00 44.36 4.26
1914 2759 3.947834 ACTGTAATATTTGTGGCTGGAGC 59.052 43.478 0.00 0.00 41.14 4.70
1915 2760 6.112734 TGTACTGTAATATTTGTGGCTGGAG 58.887 40.000 0.00 0.00 0.00 3.86
1916 2761 6.056090 TGTACTGTAATATTTGTGGCTGGA 57.944 37.500 0.00 0.00 0.00 3.86
1917 2762 6.112734 TCTGTACTGTAATATTTGTGGCTGG 58.887 40.000 0.00 0.00 0.00 4.85
1918 2763 6.258727 CCTCTGTACTGTAATATTTGTGGCTG 59.741 42.308 0.00 0.00 0.00 4.85
1919 2764 6.349300 CCTCTGTACTGTAATATTTGTGGCT 58.651 40.000 0.00 0.00 0.00 4.75
1920 2765 5.527582 CCCTCTGTACTGTAATATTTGTGGC 59.472 44.000 0.00 0.00 0.00 5.01
1921 2766 6.884832 TCCCTCTGTACTGTAATATTTGTGG 58.115 40.000 0.00 0.00 0.00 4.17
1922 2767 7.556844 ACTCCCTCTGTACTGTAATATTTGTG 58.443 38.462 0.00 0.00 0.00 3.33
1923 2768 7.735326 ACTCCCTCTGTACTGTAATATTTGT 57.265 36.000 0.00 0.00 0.00 2.83
1924 2769 8.915036 ACTACTCCCTCTGTACTGTAATATTTG 58.085 37.037 0.00 0.00 0.00 2.32
1925 2770 9.490083 AACTACTCCCTCTGTACTGTAATATTT 57.510 33.333 0.00 0.00 0.00 1.40
1926 2771 9.134055 GAACTACTCCCTCTGTACTGTAATATT 57.866 37.037 0.00 0.00 0.00 1.28
1927 2772 8.504409 AGAACTACTCCCTCTGTACTGTAATAT 58.496 37.037 0.00 0.00 0.00 1.28
1928 2773 7.774157 CAGAACTACTCCCTCTGTACTGTAATA 59.226 40.741 0.00 0.00 33.39 0.98
1929 2774 6.603997 CAGAACTACTCCCTCTGTACTGTAAT 59.396 42.308 0.00 0.00 33.39 1.89
1930 2775 5.944599 CAGAACTACTCCCTCTGTACTGTAA 59.055 44.000 0.00 0.00 33.39 2.41
1931 2776 5.250082 TCAGAACTACTCCCTCTGTACTGTA 59.750 44.000 0.00 0.00 38.20 2.74
1932 2777 4.043059 TCAGAACTACTCCCTCTGTACTGT 59.957 45.833 0.00 0.00 38.20 3.55
1933 2778 4.590918 TCAGAACTACTCCCTCTGTACTG 58.409 47.826 0.00 0.00 38.20 2.74
1934 2779 4.931027 TCAGAACTACTCCCTCTGTACT 57.069 45.455 0.00 0.00 38.20 2.73
1935 2780 4.142643 CGTTCAGAACTACTCCCTCTGTAC 60.143 50.000 11.60 0.00 38.20 2.90
1936 2781 4.008330 CGTTCAGAACTACTCCCTCTGTA 58.992 47.826 11.60 0.00 38.20 2.74
1937 2782 2.820787 CGTTCAGAACTACTCCCTCTGT 59.179 50.000 11.60 0.00 38.20 3.41
1938 2783 2.416162 GCGTTCAGAACTACTCCCTCTG 60.416 54.545 11.60 0.00 38.34 3.35
1939 2784 1.819903 GCGTTCAGAACTACTCCCTCT 59.180 52.381 11.60 0.00 0.00 3.69
1940 2785 1.544691 TGCGTTCAGAACTACTCCCTC 59.455 52.381 11.60 0.00 0.00 4.30
1941 2786 1.629043 TGCGTTCAGAACTACTCCCT 58.371 50.000 11.60 0.00 0.00 4.20
1942 2787 2.094182 TCATGCGTTCAGAACTACTCCC 60.094 50.000 11.60 0.00 0.00 4.30
1943 2788 3.232213 TCATGCGTTCAGAACTACTCC 57.768 47.619 11.60 0.00 0.00 3.85
1944 2789 7.436673 AGAATAATCATGCGTTCAGAACTACTC 59.563 37.037 11.60 0.00 0.00 2.59
1945 2790 7.223582 CAGAATAATCATGCGTTCAGAACTACT 59.776 37.037 11.60 0.00 0.00 2.57
1946 2791 7.340699 CAGAATAATCATGCGTTCAGAACTAC 58.659 38.462 11.60 4.21 0.00 2.73
1947 2792 6.018751 GCAGAATAATCATGCGTTCAGAACTA 60.019 38.462 11.60 0.97 0.00 2.24
1948 2793 5.220739 GCAGAATAATCATGCGTTCAGAACT 60.221 40.000 11.60 0.00 0.00 3.01
1962 2807 8.589335 TCGTGTTCCTAATAAGCAGAATAATC 57.411 34.615 0.00 0.00 0.00 1.75
1978 2823 2.226437 GTGTTTGCATGATCGTGTTCCT 59.774 45.455 16.18 0.00 0.00 3.36
1999 2844 1.913419 TGGTTAACTGGAAGGGCCTAG 59.087 52.381 6.41 2.66 39.30 3.02
2051 2896 7.094291 GGCTCGGTAATGTACAGATTACTAGAT 60.094 40.741 15.52 0.00 38.41 1.98
2052 2897 6.206243 GGCTCGGTAATGTACAGATTACTAGA 59.794 42.308 15.52 13.95 38.41 2.43
2053 2898 6.016527 TGGCTCGGTAATGTACAGATTACTAG 60.017 42.308 15.52 14.00 38.41 2.57
2054 2899 5.829391 TGGCTCGGTAATGTACAGATTACTA 59.171 40.000 15.52 6.91 38.41 1.82
2055 2900 4.647853 TGGCTCGGTAATGTACAGATTACT 59.352 41.667 15.52 0.00 38.41 2.24
2115 2960 9.726438 CCTCCCTAAATTTCCAACACTATATAG 57.274 37.037 8.27 8.27 0.00 1.31
2238 3084 5.031495 TCATTCCATGAATGGGGTCAAATT 58.969 37.500 14.84 0.00 46.43 1.82
2265 3117 1.244816 CTAGTGACGTGTCCAGTGGA 58.755 55.000 8.12 8.12 0.00 4.02
2266 3118 0.959553 ACTAGTGACGTGTCCAGTGG 59.040 55.000 1.40 1.40 0.00 4.00
2286 3138 5.520288 GCTGCAAACGAGTCTCAAGAATATA 59.480 40.000 0.00 0.00 0.00 0.86
2337 3189 5.466819 CGTCCCATAATATAAGAGCGTTCA 58.533 41.667 1.01 0.00 0.00 3.18
2339 3191 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2340 3192 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2342 3194 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2343 3195 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2344 3196 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2345 3197 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2346 3198 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2347 3199 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2348 3200 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2372 3226 8.999431 TGAACATTAACTACTGAACATTTCTCC 58.001 33.333 0.00 0.00 0.00 3.71
2493 3347 5.590259 TGCATAAGATAACTTTTCCCTGAGC 59.410 40.000 0.00 0.00 37.53 4.26
2664 3553 5.045651 TCAGAAGACAAGGATTTCCATGCTA 60.046 40.000 1.85 0.00 38.21 3.49
2665 3554 4.015084 CAGAAGACAAGGATTTCCATGCT 58.985 43.478 1.85 0.00 38.21 3.79
2666 3555 4.012374 TCAGAAGACAAGGATTTCCATGC 58.988 43.478 1.85 0.00 38.21 4.06
2667 3556 6.602406 AGAATCAGAAGACAAGGATTTCCATG 59.398 38.462 0.00 0.00 40.34 3.66
2668 3557 6.729428 AGAATCAGAAGACAAGGATTTCCAT 58.271 36.000 0.00 0.00 38.89 3.41
2669 3558 6.131972 AGAATCAGAAGACAAGGATTTCCA 57.868 37.500 0.00 0.00 38.89 3.53
2670 3559 6.656693 TGAAGAATCAGAAGACAAGGATTTCC 59.343 38.462 0.00 0.00 30.60 3.13
2671 3560 7.173907 TGTGAAGAATCAGAAGACAAGGATTTC 59.826 37.037 0.00 0.00 35.88 2.17
2672 3561 7.000472 TGTGAAGAATCAGAAGACAAGGATTT 59.000 34.615 0.00 0.00 35.88 2.17
2673 3562 6.537355 TGTGAAGAATCAGAAGACAAGGATT 58.463 36.000 0.00 0.00 35.88 3.01
2674 3563 6.119240 TGTGAAGAATCAGAAGACAAGGAT 57.881 37.500 0.00 0.00 35.88 3.24
2675 3564 5.551305 TGTGAAGAATCAGAAGACAAGGA 57.449 39.130 0.00 0.00 35.88 3.36
2676 3565 5.123502 CCATGTGAAGAATCAGAAGACAAGG 59.876 44.000 0.00 0.00 35.88 3.61
2677 3566 5.704515 ACCATGTGAAGAATCAGAAGACAAG 59.295 40.000 0.00 0.00 35.88 3.16
2678 3567 5.624159 ACCATGTGAAGAATCAGAAGACAA 58.376 37.500 0.00 0.00 35.88 3.18
2679 3568 5.233083 ACCATGTGAAGAATCAGAAGACA 57.767 39.130 0.00 0.00 35.88 3.41
2680 3569 6.348868 GGAAACCATGTGAAGAATCAGAAGAC 60.349 42.308 0.00 0.00 35.88 3.01
2681 3570 5.707298 GGAAACCATGTGAAGAATCAGAAGA 59.293 40.000 0.00 0.00 35.88 2.87
2682 3571 5.709164 AGGAAACCATGTGAAGAATCAGAAG 59.291 40.000 0.00 0.00 35.88 2.85
2683 3572 5.474532 CAGGAAACCATGTGAAGAATCAGAA 59.525 40.000 0.00 0.00 35.88 3.02
2684 3573 5.005740 CAGGAAACCATGTGAAGAATCAGA 58.994 41.667 0.00 0.00 35.88 3.27
2685 3574 4.763793 ACAGGAAACCATGTGAAGAATCAG 59.236 41.667 0.00 0.00 35.88 2.90
2686 3575 4.728772 ACAGGAAACCATGTGAAGAATCA 58.271 39.130 0.00 0.00 0.00 2.57
2687 3576 5.712152 AACAGGAAACCATGTGAAGAATC 57.288 39.130 0.00 0.00 0.00 2.52
2688 3577 6.777580 AGTTAACAGGAAACCATGTGAAGAAT 59.222 34.615 8.61 0.00 0.00 2.40
2720 3609 2.102588 GGCCTGTACATGGTAGTTCGAT 59.897 50.000 0.00 0.00 0.00 3.59
2814 3703 2.125512 AGCGAGAATGGCACCGAC 60.126 61.111 0.00 0.00 44.88 4.79
2864 3753 0.178873 TGGTCTTGGGCTTAGGGACT 60.179 55.000 0.00 0.00 46.37 3.85
2866 3755 0.991920 CTTGGTCTTGGGCTTAGGGA 59.008 55.000 0.00 0.00 0.00 4.20
3122 4015 4.879598 ACTCCCTCTGTACAACTTTTACG 58.120 43.478 0.00 0.00 0.00 3.18
3123 4016 8.843885 AAATACTCCCTCTGTACAACTTTTAC 57.156 34.615 0.00 0.00 0.00 2.01
3236 4130 7.649057 AGAGAAAAAGGTCCTCAAAATAAACG 58.351 34.615 0.00 0.00 0.00 3.60
3267 4162 1.839994 TCATGATCCAACTCAGGACCC 59.160 52.381 0.00 0.00 41.30 4.46
3270 4165 3.845992 TCCTTTCATGATCCAACTCAGGA 59.154 43.478 0.00 0.00 43.01 3.86
3330 4378 1.478916 CATGCCAAATCATCAGCCACA 59.521 47.619 0.00 0.00 0.00 4.17
3385 4433 7.802251 TCAATTTGACAACAAAACAAAAGCAAG 59.198 29.630 0.00 0.00 46.77 4.01
3419 4467 3.950397 ACTGTGAAGCAAATCCGGATAA 58.050 40.909 19.48 0.00 0.00 1.75
3425 4473 4.574599 ACTTGAACTGTGAAGCAAATCC 57.425 40.909 0.00 0.00 0.00 3.01
3435 4483 6.715464 ACGAGAACAATAAACTTGAACTGTG 58.285 36.000 0.00 0.00 0.00 3.66
3517 4572 1.135803 CGATGTTTTTCGCCATCCGTT 60.136 47.619 0.00 0.00 35.17 4.44
3518 4573 0.446222 CGATGTTTTTCGCCATCCGT 59.554 50.000 0.00 0.00 35.17 4.69
3519 4574 0.724549 TCGATGTTTTTCGCCATCCG 59.275 50.000 0.00 0.00 38.97 4.18
3520 4575 2.911819 TTCGATGTTTTTCGCCATCC 57.088 45.000 0.00 0.00 38.97 3.51
3523 4578 4.611943 TCAAATTTCGATGTTTTTCGCCA 58.388 34.783 0.00 0.00 38.97 5.69
3545 4600 9.408648 ACGTTTTTAGAGGATTTATGGAATCAT 57.591 29.630 6.13 0.00 44.91 2.45
3546 4601 8.673711 CACGTTTTTAGAGGATTTATGGAATCA 58.326 33.333 0.00 0.00 44.91 2.57
3547 4602 8.889717 TCACGTTTTTAGAGGATTTATGGAATC 58.110 33.333 0.00 0.00 42.84 2.52
3548 4603 8.801882 TCACGTTTTTAGAGGATTTATGGAAT 57.198 30.769 0.00 0.00 0.00 3.01
3550 4605 6.315393 GCTCACGTTTTTAGAGGATTTATGGA 59.685 38.462 2.47 0.00 0.00 3.41
3552 4607 7.064609 TGAGCTCACGTTTTTAGAGGATTTATG 59.935 37.037 13.74 0.00 0.00 1.90
3553 4608 7.103641 TGAGCTCACGTTTTTAGAGGATTTAT 58.896 34.615 13.74 0.00 0.00 1.40
3554 4609 6.460781 TGAGCTCACGTTTTTAGAGGATTTA 58.539 36.000 13.74 0.00 0.00 1.40
3568 4623 2.688507 CCTACATGTTTGAGCTCACGT 58.311 47.619 18.03 11.08 0.00 4.49
3576 4631 4.202524 ACCAAAGTAGGCCTACATGTTTGA 60.203 41.667 35.31 9.34 38.48 2.69
3577 4632 4.079253 ACCAAAGTAGGCCTACATGTTTG 58.921 43.478 37.94 33.86 38.48 2.93
3578 4633 4.382386 ACCAAAGTAGGCCTACATGTTT 57.618 40.909 37.94 27.62 38.48 2.83
3579 4634 4.382386 AACCAAAGTAGGCCTACATGTT 57.618 40.909 37.94 29.36 38.48 2.71
3580 4635 4.079253 CAAACCAAAGTAGGCCTACATGT 58.921 43.478 37.94 26.29 38.48 3.21
3581 4636 4.331968 TCAAACCAAAGTAGGCCTACATG 58.668 43.478 37.94 32.81 38.48 3.21
3582 4637 4.650972 TCAAACCAAAGTAGGCCTACAT 57.349 40.909 37.94 27.74 38.48 2.29
3583 4638 4.394729 CTTCAAACCAAAGTAGGCCTACA 58.605 43.478 37.94 16.37 38.48 2.74
3584 4639 3.756963 CCTTCAAACCAAAGTAGGCCTAC 59.243 47.826 32.07 32.07 36.35 3.18
3585 4640 3.245122 CCCTTCAAACCAAAGTAGGCCTA 60.245 47.826 8.91 8.91 0.00 3.93
3586 4641 2.490902 CCCTTCAAACCAAAGTAGGCCT 60.491 50.000 11.78 11.78 0.00 5.19
3587 4642 1.893137 CCCTTCAAACCAAAGTAGGCC 59.107 52.381 0.00 0.00 0.00 5.19
3588 4643 2.871453 TCCCTTCAAACCAAAGTAGGC 58.129 47.619 0.00 0.00 0.00 3.93
3589 4644 6.183360 ACAAAATCCCTTCAAACCAAAGTAGG 60.183 38.462 0.00 0.00 0.00 3.18
3590 4645 6.816136 ACAAAATCCCTTCAAACCAAAGTAG 58.184 36.000 0.00 0.00 0.00 2.57
3591 4646 6.800072 ACAAAATCCCTTCAAACCAAAGTA 57.200 33.333 0.00 0.00 0.00 2.24
3592 4647 5.692115 ACAAAATCCCTTCAAACCAAAGT 57.308 34.783 0.00 0.00 0.00 2.66
3593 4648 6.041523 TCCTACAAAATCCCTTCAAACCAAAG 59.958 38.462 0.00 0.00 0.00 2.77
3594 4649 5.900123 TCCTACAAAATCCCTTCAAACCAAA 59.100 36.000 0.00 0.00 0.00 3.28
3595 4650 5.459505 TCCTACAAAATCCCTTCAAACCAA 58.540 37.500 0.00 0.00 0.00 3.67
3596 4651 5.068215 TCCTACAAAATCCCTTCAAACCA 57.932 39.130 0.00 0.00 0.00 3.67
3597 4652 6.321435 CCTATCCTACAAAATCCCTTCAAACC 59.679 42.308 0.00 0.00 0.00 3.27
3598 4653 7.116736 TCCTATCCTACAAAATCCCTTCAAAC 58.883 38.462 0.00 0.00 0.00 2.93
3599 4654 7.278724 TCCTATCCTACAAAATCCCTTCAAA 57.721 36.000 0.00 0.00 0.00 2.69
3600 4655 6.901615 TCCTATCCTACAAAATCCCTTCAA 57.098 37.500 0.00 0.00 0.00 2.69
3601 4656 7.465900 AATCCTATCCTACAAAATCCCTTCA 57.534 36.000 0.00 0.00 0.00 3.02
3602 4657 8.221251 AGAAATCCTATCCTACAAAATCCCTTC 58.779 37.037 0.00 0.00 0.00 3.46
3603 4658 8.119062 AGAAATCCTATCCTACAAAATCCCTT 57.881 34.615 0.00 0.00 0.00 3.95
3604 4659 7.713704 AGAAATCCTATCCTACAAAATCCCT 57.286 36.000 0.00 0.00 0.00 4.20
3633 4688 6.490381 ACCAAAGGACAGTAAAGGAATTCTTC 59.510 38.462 5.23 0.00 33.94 2.87
3634 4689 6.373759 ACCAAAGGACAGTAAAGGAATTCTT 58.626 36.000 5.23 0.00 37.28 2.52
3635 4690 5.953571 ACCAAAGGACAGTAAAGGAATTCT 58.046 37.500 5.23 0.00 0.00 2.40
3636 4691 6.650427 AACCAAAGGACAGTAAAGGAATTC 57.350 37.500 0.00 0.00 0.00 2.17
3637 4692 7.432148 AAAACCAAAGGACAGTAAAGGAATT 57.568 32.000 0.00 0.00 0.00 2.17
3638 4693 7.432148 AAAAACCAAAGGACAGTAAAGGAAT 57.568 32.000 0.00 0.00 0.00 3.01
3639 4694 6.860790 AAAAACCAAAGGACAGTAAAGGAA 57.139 33.333 0.00 0.00 0.00 3.36
3640 4695 7.348033 TCTAAAAACCAAAGGACAGTAAAGGA 58.652 34.615 0.00 0.00 0.00 3.36
3641 4696 7.576861 TCTAAAAACCAAAGGACAGTAAAGG 57.423 36.000 0.00 0.00 0.00 3.11
3646 4701 8.990163 TCTATTTCTAAAAACCAAAGGACAGT 57.010 30.769 0.00 0.00 0.00 3.55
3679 4734 8.820831 GGATATGAAGAATTTCTCTCCATAGGA 58.179 37.037 15.22 0.00 34.31 2.94
3680 4735 8.824783 AGGATATGAAGAATTTCTCTCCATAGG 58.175 37.037 15.22 0.00 32.75 2.57
3683 4738 8.721479 TGAAGGATATGAAGAATTTCTCTCCAT 58.279 33.333 0.00 6.73 32.75 3.41
3684 4739 7.989741 GTGAAGGATATGAAGAATTTCTCTCCA 59.010 37.037 0.00 0.00 32.75 3.86
3685 4740 7.989741 TGTGAAGGATATGAAGAATTTCTCTCC 59.010 37.037 0.00 2.45 34.31 3.71
3686 4741 8.954950 TGTGAAGGATATGAAGAATTTCTCTC 57.045 34.615 0.00 1.31 34.31 3.20
3687 4742 9.917887 AATGTGAAGGATATGAAGAATTTCTCT 57.082 29.630 0.00 0.00 34.31 3.10
3694 4749 9.565090 CCTATGAAATGTGAAGGATATGAAGAA 57.435 33.333 0.00 0.00 0.00 2.52
3695 4750 8.937835 TCCTATGAAATGTGAAGGATATGAAGA 58.062 33.333 0.00 0.00 31.41 2.87
3696 4751 9.565090 TTCCTATGAAATGTGAAGGATATGAAG 57.435 33.333 0.00 0.00 36.28 3.02
3697 4752 9.919416 TTTCCTATGAAATGTGAAGGATATGAA 57.081 29.630 0.00 0.00 36.28 2.57
3698 4753 9.919416 TTTTCCTATGAAATGTGAAGGATATGA 57.081 29.630 0.00 0.00 40.08 2.15
3757 4812 9.770097 GAGAGATGTTCTTTGGTTCATATCATA 57.230 33.333 0.00 0.00 35.87 2.15
3758 4813 8.270030 TGAGAGATGTTCTTTGGTTCATATCAT 58.730 33.333 0.00 0.00 35.87 2.45
3759 4814 7.623630 TGAGAGATGTTCTTTGGTTCATATCA 58.376 34.615 0.00 0.00 35.87 2.15
3760 4815 7.984050 TCTGAGAGATGTTCTTTGGTTCATATC 59.016 37.037 0.00 0.00 35.87 1.63
3761 4816 7.768120 GTCTGAGAGATGTTCTTTGGTTCATAT 59.232 37.037 0.00 0.00 35.87 1.78
3762 4817 7.038729 AGTCTGAGAGATGTTCTTTGGTTCATA 60.039 37.037 0.00 0.00 35.87 2.15
3763 4818 5.936956 GTCTGAGAGATGTTCTTTGGTTCAT 59.063 40.000 0.00 0.00 35.87 2.57
3764 4819 5.070981 AGTCTGAGAGATGTTCTTTGGTTCA 59.929 40.000 0.00 0.00 35.87 3.18
3765 4820 5.546526 AGTCTGAGAGATGTTCTTTGGTTC 58.453 41.667 0.00 0.00 35.87 3.62
3766 4821 5.070981 TGAGTCTGAGAGATGTTCTTTGGTT 59.929 40.000 0.00 0.00 35.87 3.67
3767 4822 4.590647 TGAGTCTGAGAGATGTTCTTTGGT 59.409 41.667 0.00 0.00 35.87 3.67
3768 4823 5.144692 TGAGTCTGAGAGATGTTCTTTGG 57.855 43.478 0.00 0.00 35.87 3.28
3769 4824 5.811613 GGATGAGTCTGAGAGATGTTCTTTG 59.188 44.000 0.00 0.00 35.87 2.77
3770 4825 5.483231 TGGATGAGTCTGAGAGATGTTCTTT 59.517 40.000 0.00 0.00 35.87 2.52
3771 4826 5.022122 TGGATGAGTCTGAGAGATGTTCTT 58.978 41.667 0.00 0.00 35.87 2.52
3772 4827 4.608269 TGGATGAGTCTGAGAGATGTTCT 58.392 43.478 0.00 0.00 39.43 3.01
3773 4828 4.998671 TGGATGAGTCTGAGAGATGTTC 57.001 45.455 0.00 0.00 0.00 3.18
3774 4829 5.954153 ATTGGATGAGTCTGAGAGATGTT 57.046 39.130 0.00 0.00 0.00 2.71
3775 4830 5.163322 GGAATTGGATGAGTCTGAGAGATGT 60.163 44.000 0.00 0.00 0.00 3.06
3776 4831 5.070714 AGGAATTGGATGAGTCTGAGAGATG 59.929 44.000 0.00 0.00 0.00 2.90
3777 4832 5.218179 AGGAATTGGATGAGTCTGAGAGAT 58.782 41.667 0.00 0.00 0.00 2.75
3778 4833 4.618635 AGGAATTGGATGAGTCTGAGAGA 58.381 43.478 0.00 0.00 0.00 3.10
3779 4834 6.669125 ATAGGAATTGGATGAGTCTGAGAG 57.331 41.667 0.00 0.00 0.00 3.20
3780 4835 6.612863 TGAATAGGAATTGGATGAGTCTGAGA 59.387 38.462 0.00 0.00 0.00 3.27
3781 4836 6.824553 TGAATAGGAATTGGATGAGTCTGAG 58.175 40.000 0.00 0.00 0.00 3.35
3782 4837 6.813293 TGAATAGGAATTGGATGAGTCTGA 57.187 37.500 0.00 0.00 0.00 3.27
3783 4838 8.591940 TCTATGAATAGGAATTGGATGAGTCTG 58.408 37.037 0.00 0.00 0.00 3.51
3784 4839 8.733092 TCTATGAATAGGAATTGGATGAGTCT 57.267 34.615 0.00 0.00 0.00 3.24
3785 4840 9.784531 TTTCTATGAATAGGAATTGGATGAGTC 57.215 33.333 0.00 0.00 0.00 3.36
3795 4850 9.803507 TGCATCTCAATTTCTATGAATAGGAAT 57.196 29.630 0.00 0.00 39.66 3.01
3796 4851 9.803507 ATGCATCTCAATTTCTATGAATAGGAA 57.196 29.630 0.00 0.00 32.68 3.36
3797 4852 9.227777 CATGCATCTCAATTTCTATGAATAGGA 57.772 33.333 0.00 0.00 0.00 2.94
3798 4853 9.227777 TCATGCATCTCAATTTCTATGAATAGG 57.772 33.333 0.00 0.00 0.00 2.57
3802 4857 9.961265 GATTTCATGCATCTCAATTTCTATGAA 57.039 29.630 0.00 0.00 33.11 2.57
3803 4858 9.350951 AGATTTCATGCATCTCAATTTCTATGA 57.649 29.630 0.00 0.00 0.00 2.15
3804 4859 9.967346 AAGATTTCATGCATCTCAATTTCTATG 57.033 29.630 0.00 0.00 30.19 2.23
3812 4867 9.797556 CAAGAAATAAGATTTCATGCATCTCAA 57.202 29.630 13.01 0.00 30.19 3.02
3813 4868 7.919091 GCAAGAAATAAGATTTCATGCATCTCA 59.081 33.333 25.57 0.00 46.30 3.27
3814 4869 8.283340 GCAAGAAATAAGATTTCATGCATCTC 57.717 34.615 25.57 6.61 46.30 2.75
3819 4874 7.823149 ACTTGCAAGAAATAAGATTTCATGC 57.177 32.000 32.50 24.54 46.84 4.06
3821 4876 9.428097 GGAAACTTGCAAGAAATAAGATTTCAT 57.572 29.630 32.50 1.82 0.00 2.57
3822 4877 8.641541 AGGAAACTTGCAAGAAATAAGATTTCA 58.358 29.630 32.50 0.00 37.44 2.69
3826 4881 9.466497 TCATAGGAAACTTGCAAGAAATAAGAT 57.534 29.630 32.50 13.60 43.67 2.40
3827 4882 8.862325 TCATAGGAAACTTGCAAGAAATAAGA 57.138 30.769 32.50 16.03 43.67 2.10
3832 4887 9.241919 TGATTATCATAGGAAACTTGCAAGAAA 57.758 29.630 32.50 10.86 43.67 2.52
3833 4888 8.806429 TGATTATCATAGGAAACTTGCAAGAA 57.194 30.769 32.50 11.92 43.67 2.52
3834 4889 8.985315 ATGATTATCATAGGAAACTTGCAAGA 57.015 30.769 32.50 9.68 43.67 3.02
3836 4891 9.066892 GGTATGATTATCATAGGAAACTTGCAA 57.933 33.333 14.47 0.00 39.76 4.08
3837 4892 7.665559 GGGTATGATTATCATAGGAAACTTGCA 59.334 37.037 14.47 0.00 39.76 4.08
3838 4893 7.885399 AGGGTATGATTATCATAGGAAACTTGC 59.115 37.037 14.47 1.15 39.76 4.01
3853 4908 8.665906 CCTCCTTTGGTTTATAGGGTATGATTA 58.334 37.037 0.00 0.00 0.00 1.75
3854 4909 7.130442 ACCTCCTTTGGTTTATAGGGTATGATT 59.870 37.037 0.00 0.00 36.89 2.57
3855 4910 6.624021 ACCTCCTTTGGTTTATAGGGTATGAT 59.376 38.462 0.00 0.00 36.89 2.45
3856 4911 5.974370 ACCTCCTTTGGTTTATAGGGTATGA 59.026 40.000 0.00 0.00 36.89 2.15
3857 4912 6.262056 ACCTCCTTTGGTTTATAGGGTATG 57.738 41.667 0.00 0.00 36.89 2.39
3869 4924 4.412528 AGAAACTCTACAACCTCCTTTGGT 59.587 41.667 0.00 0.00 43.11 3.67
3870 4925 4.757149 CAGAAACTCTACAACCTCCTTTGG 59.243 45.833 0.00 0.00 0.00 3.28
3871 4926 5.368989 ACAGAAACTCTACAACCTCCTTTG 58.631 41.667 0.00 0.00 0.00 2.77
3872 4927 5.632034 ACAGAAACTCTACAACCTCCTTT 57.368 39.130 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.