Multiple sequence alignment - TraesCS4D01G131700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G131700 chr4D 100.000 4046 0 0 1 4046 118435915 118431870 0.000000e+00 7472.0
1 TraesCS4D01G131700 chr4A 96.030 1083 38 4 907 1984 455022614 455023696 0.000000e+00 1757.0
2 TraesCS4D01G131700 chr4A 95.186 727 30 4 2165 2890 455028142 455028864 0.000000e+00 1144.0
3 TraesCS4D01G131700 chr4A 92.481 665 40 6 1370 2026 715213274 715212612 0.000000e+00 942.0
4 TraesCS4D01G131700 chr4A 88.043 644 46 15 220 854 455021608 455022229 0.000000e+00 734.0
5 TraesCS4D01G131700 chr4A 94.613 297 13 2 2930 3223 455028857 455029153 1.330000e-124 457.0
6 TraesCS4D01G131700 chr4A 81.818 429 67 10 2273 2693 727410233 727409808 2.310000e-92 350.0
7 TraesCS4D01G131700 chr4A 93.333 210 13 1 1 210 454825664 454825872 3.930000e-80 309.0
8 TraesCS4D01G131700 chr4A 82.388 335 52 6 2364 2693 727403018 727402686 6.620000e-73 285.0
9 TraesCS4D01G131700 chr4A 92.857 154 3 2 3219 3364 455029261 455029414 2.450000e-52 217.0
10 TraesCS4D01G131700 chr4A 85.600 125 13 3 3926 4046 611936807 611936684 4.250000e-25 126.0
11 TraesCS4D01G131700 chr4B 93.170 1142 50 12 907 2029 180944811 180943679 0.000000e+00 1652.0
12 TraesCS4D01G131700 chr4B 95.252 674 19 7 2226 2890 180941718 180941049 0.000000e+00 1055.0
13 TraesCS4D01G131700 chr4B 93.083 665 37 5 1370 2026 83556320 83556983 0.000000e+00 965.0
14 TraesCS4D01G131700 chr4B 91.765 595 39 6 1 589 180985945 180985355 0.000000e+00 819.0
15 TraesCS4D01G131700 chr4B 92.342 444 21 6 2930 3362 180941056 180940615 1.600000e-173 619.0
16 TraesCS4D01G131700 chr4B 90.659 182 13 3 2026 2207 180943607 180943430 5.230000e-59 239.0
17 TraesCS4D01G131700 chr4B 89.683 126 6 3 3363 3481 180903349 180903224 1.950000e-33 154.0
18 TraesCS4D01G131700 chr2B 92.446 834 54 6 1201 2026 467356346 467355514 0.000000e+00 1182.0
19 TraesCS4D01G131700 chr2B 83.743 529 76 9 3476 4000 798190475 798189953 3.630000e-135 492.0
20 TraesCS4D01G131700 chr2B 80.653 429 71 10 2273 2693 306873048 306872624 5.040000e-84 322.0
21 TraesCS4D01G131700 chr2B 100.000 54 0 0 2884 2937 33943031 33942978 2.570000e-17 100.0
22 TraesCS4D01G131700 chr2B 85.882 85 6 6 2852 2932 73800178 73800260 7.210000e-13 86.1
23 TraesCS4D01G131700 chr5B 93.056 792 46 5 1243 2026 141777816 141777026 0.000000e+00 1149.0
24 TraesCS4D01G131700 chr5B 93.363 663 35 5 1370 2024 668599527 668598866 0.000000e+00 972.0
25 TraesCS4D01G131700 chr5B 87.166 187 22 2 412 596 24106860 24107046 1.140000e-50 211.0
26 TraesCS4D01G131700 chr5B 88.827 179 11 2 1121 1299 278795578 278795747 1.140000e-50 211.0
27 TraesCS4D01G131700 chr5B 88.608 79 4 5 2860 2936 159094219 159094294 1.550000e-14 91.6
28 TraesCS4D01G131700 chr7B 93.062 663 37 5 1370 2024 253371994 253372655 0.000000e+00 961.0
29 TraesCS4D01G131700 chr7B 92.632 665 40 5 1370 2026 398826511 398825848 0.000000e+00 948.0
30 TraesCS4D01G131700 chr3B 93.062 663 37 3 1370 2024 36493622 36494283 0.000000e+00 961.0
31 TraesCS4D01G131700 chr5A 84.587 545 75 8 3479 4017 9664350 9663809 2.140000e-147 532.0
32 TraesCS4D01G131700 chr5A 83.636 495 68 10 3479 3966 321167693 321168181 1.710000e-123 453.0
33 TraesCS4D01G131700 chr5A 81.860 430 65 11 2273 2693 696355104 696355529 2.310000e-92 350.0
34 TraesCS4D01G131700 chr5A 79.876 323 38 12 995 1299 329378486 329378799 1.140000e-50 211.0
35 TraesCS4D01G131700 chr5A 75.269 465 71 32 1489 1940 329378996 329379429 8.930000e-42 182.0
36 TraesCS4D01G131700 chrUn 85.772 492 62 7 3478 3966 41161086 41160600 7.750000e-142 514.0
37 TraesCS4D01G131700 chrUn 80.952 546 93 11 3478 4017 29876782 29877322 4.840000e-114 422.0
38 TraesCS4D01G131700 chr6D 87.381 420 51 2 3599 4017 291216583 291217001 7.860000e-132 481.0
39 TraesCS4D01G131700 chr7D 81.979 566 77 19 3477 4021 544987387 544987948 1.330000e-124 457.0
40 TraesCS4D01G131700 chr7D 83.669 496 65 14 3478 3965 498258188 498258675 1.710000e-123 453.0
41 TraesCS4D01G131700 chr7D 95.082 61 3 0 2877 2937 463977551 463977611 3.330000e-16 97.1
42 TraesCS4D01G131700 chr3A 82.519 532 74 16 3477 4000 423622330 423622850 2.220000e-122 449.0
43 TraesCS4D01G131700 chr2A 81.206 431 64 14 2273 2693 699621850 699622273 8.380000e-87 331.0
44 TraesCS4D01G131700 chr2A 80.420 429 73 9 2273 2693 139391570 139391145 2.350000e-82 316.0
45 TraesCS4D01G131700 chr2D 85.022 227 31 3 2268 2492 567581454 567581229 1.130000e-55 228.0
46 TraesCS4D01G131700 chr2D 92.754 69 3 2 2868 2936 97865248 97865182 9.250000e-17 99.0
47 TraesCS4D01G131700 chr5D 89.944 179 9 2 1121 1299 245377334 245377503 5.260000e-54 222.0
48 TraesCS4D01G131700 chr5D 87.097 186 22 2 412 595 32711351 32711536 4.100000e-50 209.0
49 TraesCS4D01G131700 chr5D 90.909 99 8 1 1486 1583 245377692 245377790 9.120000e-27 132.0
50 TraesCS4D01G131700 chr5D 98.246 57 0 1 2881 2936 373834939 373834995 9.250000e-17 99.0
51 TraesCS4D01G131700 chr7A 95.082 61 3 0 2877 2937 472124545 472124485 3.330000e-16 97.1
52 TraesCS4D01G131700 chr6A 93.651 63 4 0 2874 2936 514878748 514878810 1.200000e-15 95.3
53 TraesCS4D01G131700 chr1A 93.750 64 2 2 2884 2946 570707034 570707096 1.200000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G131700 chr4D 118431870 118435915 4045 True 7472.00 7472 100.000000 1 4046 1 chr4D.!!$R1 4045
1 TraesCS4D01G131700 chr4A 455021608 455023696 2088 False 1245.50 1757 92.036500 220 1984 2 chr4A.!!$F2 1764
2 TraesCS4D01G131700 chr4A 715212612 715213274 662 True 942.00 942 92.481000 1370 2026 1 chr4A.!!$R2 656
3 TraesCS4D01G131700 chr4A 455028142 455029414 1272 False 606.00 1144 94.218667 2165 3364 3 chr4A.!!$F3 1199
4 TraesCS4D01G131700 chr4B 83556320 83556983 663 False 965.00 965 93.083000 1370 2026 1 chr4B.!!$F1 656
5 TraesCS4D01G131700 chr4B 180940615 180944811 4196 True 891.25 1652 92.855750 907 3362 4 chr4B.!!$R3 2455
6 TraesCS4D01G131700 chr4B 180985355 180985945 590 True 819.00 819 91.765000 1 589 1 chr4B.!!$R2 588
7 TraesCS4D01G131700 chr2B 467355514 467356346 832 True 1182.00 1182 92.446000 1201 2026 1 chr2B.!!$R3 825
8 TraesCS4D01G131700 chr2B 798189953 798190475 522 True 492.00 492 83.743000 3476 4000 1 chr2B.!!$R4 524
9 TraesCS4D01G131700 chr5B 141777026 141777816 790 True 1149.00 1149 93.056000 1243 2026 1 chr5B.!!$R1 783
10 TraesCS4D01G131700 chr5B 668598866 668599527 661 True 972.00 972 93.363000 1370 2024 1 chr5B.!!$R2 654
11 TraesCS4D01G131700 chr7B 253371994 253372655 661 False 961.00 961 93.062000 1370 2024 1 chr7B.!!$F1 654
12 TraesCS4D01G131700 chr7B 398825848 398826511 663 True 948.00 948 92.632000 1370 2026 1 chr7B.!!$R1 656
13 TraesCS4D01G131700 chr3B 36493622 36494283 661 False 961.00 961 93.062000 1370 2024 1 chr3B.!!$F1 654
14 TraesCS4D01G131700 chr5A 9663809 9664350 541 True 532.00 532 84.587000 3479 4017 1 chr5A.!!$R1 538
15 TraesCS4D01G131700 chrUn 29876782 29877322 540 False 422.00 422 80.952000 3478 4017 1 chrUn.!!$F1 539
16 TraesCS4D01G131700 chr7D 544987387 544987948 561 False 457.00 457 81.979000 3477 4021 1 chr7D.!!$F3 544
17 TraesCS4D01G131700 chr3A 423622330 423622850 520 False 449.00 449 82.519000 3477 4000 1 chr3A.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.034380 TAGAGCACTACAGGCGACCT 60.034 55.0 0.0 0.0 36.08 3.85 F
1311 1659 0.034896 AGTGAGTAAACCCGCACCAG 59.965 55.0 0.0 0.0 31.85 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 2137 1.064803 CTAGCTAGCACGACAGGACAG 59.935 57.143 18.83 0.0 0.0 3.51 R
3065 5203 0.700564 ATCTTCCCCTGAGCAGCAAA 59.299 50.000 0.00 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.691508 AGAACAAAGGGAAGCAAATAATGAC 58.308 36.000 0.00 0.00 0.00 3.06
60 61 4.082517 ACATATGATAGAGCACTACAGGCG 60.083 45.833 10.38 0.00 36.08 5.52
62 63 1.676529 TGATAGAGCACTACAGGCGAC 59.323 52.381 0.00 0.00 36.08 5.19
63 64 1.001158 GATAGAGCACTACAGGCGACC 60.001 57.143 0.00 0.00 36.08 4.79
64 65 0.034380 TAGAGCACTACAGGCGACCT 60.034 55.000 0.00 0.00 36.08 3.85
97 98 1.630369 TGCCTAGAGTGGTTGCTCAAT 59.370 47.619 0.00 0.00 37.94 2.57
103 104 2.107204 AGAGTGGTTGCTCAATGGACTT 59.893 45.455 0.00 0.00 37.94 3.01
104 105 2.485814 GAGTGGTTGCTCAATGGACTTC 59.514 50.000 0.00 0.00 35.67 3.01
108 109 1.075601 TTGCTCAATGGACTTCCCCT 58.924 50.000 0.00 0.00 34.29 4.79
114 115 2.162681 CAATGGACTTCCCCTTGTCAC 58.837 52.381 0.00 0.00 36.26 3.67
149 150 6.705863 ATTAAACTCAGATGGATCCTTTGC 57.294 37.500 14.23 0.00 0.00 3.68
172 173 2.039405 GGAAGCTCAGCTGGTGCAG 61.039 63.158 26.04 13.84 39.62 4.41
173 174 1.004080 GAAGCTCAGCTGGTGCAGA 60.004 57.895 26.04 3.28 39.62 4.26
178 179 1.474677 GCTCAGCTGGTGCAGATATGT 60.475 52.381 21.75 0.00 42.74 2.29
188 189 4.080919 TGGTGCAGATATGTTGCTTAGAGT 60.081 41.667 9.49 0.00 42.02 3.24
215 216 8.028540 GTTGATGGAACCATTGTTTATTTTCC 57.971 34.615 7.79 0.00 36.70 3.13
216 217 7.552050 TGATGGAACCATTGTTTATTTTCCT 57.448 32.000 7.79 0.00 36.70 3.36
217 218 7.385267 TGATGGAACCATTGTTTATTTTCCTG 58.615 34.615 7.79 0.00 36.70 3.86
218 219 6.739331 TGGAACCATTGTTTATTTTCCTGT 57.261 33.333 0.00 0.00 33.97 4.00
223 224 5.160641 CCATTGTTTATTTTCCTGTCGTGG 58.839 41.667 0.00 0.00 0.00 4.94
255 256 2.669434 GCAAAACTATGTGCTTGCATGG 59.331 45.455 0.00 0.00 42.91 3.66
273 274 0.915364 GGAGGGATTGTCTCTTGCCT 59.085 55.000 0.00 0.00 0.00 4.75
274 275 2.119495 GGAGGGATTGTCTCTTGCCTA 58.881 52.381 0.00 0.00 0.00 3.93
281 287 4.081420 GGATTGTCTCTTGCCTAGAAGTGA 60.081 45.833 0.00 0.00 30.91 3.41
287 293 5.752955 GTCTCTTGCCTAGAAGTGATCATTC 59.247 44.000 0.00 4.34 30.42 2.67
334 340 0.535780 TGCAGTCAAGCTTGTCCAGG 60.536 55.000 25.19 13.32 34.99 4.45
343 349 0.250901 GCTTGTCCAGGCAAAGGAGA 60.251 55.000 0.00 0.00 35.42 3.71
353 359 4.141528 CCAGGCAAAGGAGACTGATAGATT 60.142 45.833 0.00 0.00 42.68 2.40
471 477 6.355638 CGATAGCTTAGCTAATTTTGTTCGG 58.644 40.000 18.34 2.96 44.62 4.30
472 478 6.200286 CGATAGCTTAGCTAATTTTGTTCGGA 59.800 38.462 18.34 0.00 44.62 4.55
494 500 4.330250 ACTGAAGGAAGAACCATGACATG 58.670 43.478 8.56 8.56 42.04 3.21
508 514 4.531854 CATGACATGGTTGGGTTATGGTA 58.468 43.478 7.60 0.00 30.07 3.25
634 640 1.668101 GAGAGGAGCCATCGACGGTT 61.668 60.000 0.00 0.00 0.00 4.44
637 643 2.434185 GAGCCATCGACGGTTGCA 60.434 61.111 6.96 0.00 0.00 4.08
660 666 3.270877 CCATTTAGGATACGCCATAGGC 58.729 50.000 0.00 0.00 42.68 3.93
685 691 1.004595 GATTGGTTCGCTCGGGTAAC 58.995 55.000 0.00 0.00 0.00 2.50
694 700 1.447314 CTCGGGTAACAAGCCGTCC 60.447 63.158 14.82 0.00 39.74 4.79
696 702 2.435410 GGGTAACAAGCCGTCCGG 60.435 66.667 0.24 0.24 39.74 5.14
697 703 2.658422 GGTAACAAGCCGTCCGGA 59.342 61.111 10.46 0.00 37.50 5.14
698 704 1.004679 GGTAACAAGCCGTCCGGAA 60.005 57.895 5.23 0.00 37.50 4.30
699 705 0.603439 GGTAACAAGCCGTCCGGAAA 60.603 55.000 5.23 0.00 37.50 3.13
701 707 1.603326 GTAACAAGCCGTCCGGAAAAA 59.397 47.619 5.23 0.00 37.50 1.94
702 708 1.324383 AACAAGCCGTCCGGAAAAAT 58.676 45.000 5.23 0.00 37.50 1.82
703 709 0.596082 ACAAGCCGTCCGGAAAAATG 59.404 50.000 5.23 4.75 37.50 2.32
705 711 0.250989 AAGCCGTCCGGAAAAATGGA 60.251 50.000 5.23 0.00 37.50 3.41
706 712 0.250989 AGCCGTCCGGAAAAATGGAA 60.251 50.000 5.23 0.00 35.67 3.53
707 713 0.815095 GCCGTCCGGAAAAATGGAAT 59.185 50.000 5.23 0.00 35.67 3.01
708 714 1.469079 GCCGTCCGGAAAAATGGAATG 60.469 52.381 5.23 0.00 35.67 2.67
709 715 2.088423 CCGTCCGGAAAAATGGAATGA 58.912 47.619 5.23 0.00 35.67 2.57
710 716 2.490115 CCGTCCGGAAAAATGGAATGAA 59.510 45.455 5.23 0.00 35.67 2.57
711 717 3.427503 CCGTCCGGAAAAATGGAATGAAG 60.428 47.826 5.23 0.00 35.67 3.02
712 718 3.438781 CGTCCGGAAAAATGGAATGAAGA 59.561 43.478 5.23 0.00 35.67 2.87
713 719 4.083003 CGTCCGGAAAAATGGAATGAAGAA 60.083 41.667 5.23 0.00 35.67 2.52
714 720 5.563867 CGTCCGGAAAAATGGAATGAAGAAA 60.564 40.000 5.23 0.00 35.67 2.52
715 721 6.220201 GTCCGGAAAAATGGAATGAAGAAAA 58.780 36.000 5.23 0.00 35.67 2.29
716 722 6.704050 GTCCGGAAAAATGGAATGAAGAAAAA 59.296 34.615 5.23 0.00 35.67 1.94
717 723 7.387673 GTCCGGAAAAATGGAATGAAGAAAAAT 59.612 33.333 5.23 0.00 35.67 1.82
718 724 7.387397 TCCGGAAAAATGGAATGAAGAAAAATG 59.613 33.333 0.00 0.00 0.00 2.32
719 725 7.387397 CCGGAAAAATGGAATGAAGAAAAATGA 59.613 33.333 0.00 0.00 0.00 2.57
720 726 8.772705 CGGAAAAATGGAATGAAGAAAAATGAA 58.227 29.630 0.00 0.00 0.00 2.57
723 729 8.625786 AAAATGGAATGAAGAAAAATGAAGGG 57.374 30.769 0.00 0.00 0.00 3.95
724 730 7.557875 AATGGAATGAAGAAAAATGAAGGGA 57.442 32.000 0.00 0.00 0.00 4.20
759 765 9.868389 CAATGAAGAAAAAGAAAACTATTTGGC 57.132 29.630 0.00 0.00 0.00 4.52
761 767 8.419076 TGAAGAAAAAGAAAACTATTTGGCAC 57.581 30.769 0.00 0.00 0.00 5.01
778 784 4.075682 TGGCACGTATGGAATGAAGAAAA 58.924 39.130 0.00 0.00 0.00 2.29
779 785 4.520874 TGGCACGTATGGAATGAAGAAAAA 59.479 37.500 0.00 0.00 0.00 1.94
780 786 5.184864 TGGCACGTATGGAATGAAGAAAAAT 59.815 36.000 0.00 0.00 0.00 1.82
783 789 6.624861 GCACGTATGGAATGAAGAAAAATGGA 60.625 38.462 0.00 0.00 0.00 3.41
803 809 3.570125 GGAAACAGAGAAGGTGGGAAAAG 59.430 47.826 0.00 0.00 0.00 2.27
810 816 3.950395 GAGAAGGTGGGAAAAGGATCATG 59.050 47.826 0.00 0.00 0.00 3.07
814 820 4.089361 AGGTGGGAAAAGGATCATGAAAC 58.911 43.478 0.00 0.00 0.00 2.78
832 838 5.974300 TGAAACGAGAAAATTCTGAAGACG 58.026 37.500 0.00 0.45 37.73 4.18
850 856 5.923733 AGACGAGGAAGTGAGATTACAAT 57.076 39.130 0.00 0.00 0.00 2.71
852 858 6.334202 AGACGAGGAAGTGAGATTACAATTC 58.666 40.000 0.00 0.00 41.88 2.17
861 1100 8.655935 AAGTGAGATTACAATTCCCTTTCAAT 57.344 30.769 0.00 0.00 0.00 2.57
900 1170 6.509418 AATGTATGCGAGTATTTTGTTGGT 57.491 33.333 0.00 0.00 0.00 3.67
904 1174 6.651643 TGTATGCGAGTATTTTGTTGGTTAGT 59.348 34.615 0.00 0.00 0.00 2.24
926 1265 2.526888 TACCTATCCAGCTATCCCCG 57.473 55.000 0.00 0.00 0.00 5.73
934 1273 0.178975 CAGCTATCCCCGTCTCCTCT 60.179 60.000 0.00 0.00 0.00 3.69
935 1274 0.111639 AGCTATCCCCGTCTCCTCTC 59.888 60.000 0.00 0.00 0.00 3.20
945 1287 1.682684 TCTCCTCTCCCACTTCGGC 60.683 63.158 0.00 0.00 0.00 5.54
971 1313 2.539081 GCCCACTTCCAGTTCCCCT 61.539 63.158 0.00 0.00 0.00 4.79
1260 1608 1.156736 CCAGGCAAAAGTTCGTCGAT 58.843 50.000 0.00 0.00 0.00 3.59
1305 1653 2.673368 GCAGATCAAGTGAGTAAACCCG 59.327 50.000 0.00 0.00 0.00 5.28
1311 1659 0.034896 AGTGAGTAAACCCGCACCAG 59.965 55.000 0.00 0.00 31.85 4.00
1332 1680 1.023513 GCTATGCGCCTCATCATCCC 61.024 60.000 4.18 0.00 36.63 3.85
1382 1735 7.384932 GTGCCTGCAGATTTTACTGTAAATTTT 59.615 33.333 17.39 3.62 39.73 1.82
1415 1768 5.068591 ACTGATGGTTTTGGTTTGAGTTACC 59.931 40.000 0.00 0.00 36.17 2.85
1655 2014 4.276678 TCTGAACAAAGCTTGGTTCTGATG 59.723 41.667 34.84 25.25 42.89 3.07
1711 2070 1.139947 GAGCGACGAGGAAAGGGAG 59.860 63.158 0.00 0.00 0.00 4.30
1762 2121 7.775093 CAGGTATCATTGATTTCCTTGACCTTA 59.225 37.037 15.72 0.00 0.00 2.69
1829 2189 6.000246 TGGATGATGCTTGGTGTATTCTTA 58.000 37.500 0.00 0.00 0.00 2.10
1984 2344 6.683974 TGCATATTCAGTTCTTAGAAAGGC 57.316 37.500 0.00 0.00 0.00 4.35
1985 2345 6.179756 TGCATATTCAGTTCTTAGAAAGGCA 58.820 36.000 0.00 0.00 0.00 4.75
1993 2353 5.293079 CAGTTCTTAGAAAGGCACTATCAGC 59.707 44.000 0.00 0.00 38.49 4.26
2012 2372 4.080356 TCAGCTGTGCCAGATTAATTACCT 60.080 41.667 14.67 0.00 32.44 3.08
2032 2467 4.041321 ACCTGGGGAAAGTAACAGTAGTTC 59.959 45.833 0.00 0.00 39.15 3.01
2033 2468 4.041198 CCTGGGGAAAGTAACAGTAGTTCA 59.959 45.833 0.00 0.00 39.15 3.18
2040 2475 7.760340 GGGAAAGTAACAGTAGTTCACTAGATG 59.240 40.741 0.00 0.00 39.15 2.90
2044 2479 8.046294 AGTAACAGTAGTTCACTAGATGACAG 57.954 38.462 0.00 0.00 36.92 3.51
2045 2480 5.317733 ACAGTAGTTCACTAGATGACAGC 57.682 43.478 0.00 0.00 36.92 4.40
2053 2488 6.150641 AGTTCACTAGATGACAGCGTAAGTTA 59.849 38.462 0.00 0.00 36.92 2.24
2054 2489 6.120378 TCACTAGATGACAGCGTAAGTTAG 57.880 41.667 0.00 0.00 33.07 2.34
2055 2490 5.646793 TCACTAGATGACAGCGTAAGTTAGT 59.353 40.000 0.00 0.00 33.07 2.24
2056 2491 6.820152 TCACTAGATGACAGCGTAAGTTAGTA 59.180 38.462 0.00 0.00 33.07 1.82
2058 2493 5.502153 AGATGACAGCGTAAGTTAGTAGG 57.498 43.478 0.00 0.00 41.68 3.18
2059 2494 4.948621 AGATGACAGCGTAAGTTAGTAGGT 59.051 41.667 0.00 0.00 41.68 3.08
2060 2495 6.118170 AGATGACAGCGTAAGTTAGTAGGTA 58.882 40.000 0.00 0.00 41.68 3.08
2061 2496 5.551760 TGACAGCGTAAGTTAGTAGGTAC 57.448 43.478 0.00 0.00 41.68 3.34
2066 2501 8.371770 ACAGCGTAAGTTAGTAGGTACTATAC 57.628 38.462 0.00 0.00 41.84 1.47
2078 2513 8.627208 AGTAGGTACTATACGCAAAGCTATAA 57.373 34.615 0.00 0.00 45.60 0.98
2118 2553 2.637382 TGGCCTCAGTCAAACAGATGTA 59.363 45.455 3.32 0.00 0.00 2.29
2130 2565 9.683069 AGTCAAACAGATGTAAATTTTTAGCTG 57.317 29.630 14.35 14.35 0.00 4.24
2146 2581 5.801350 TTAGCTGTTGATCAGTTATGCAC 57.199 39.130 0.00 0.00 45.23 4.57
2203 2638 6.017687 TGTCTGATCATCAAAAACTGTCACTG 60.018 38.462 0.00 0.00 0.00 3.66
2207 2642 2.435372 TCAAAAACTGTCACTGCCCT 57.565 45.000 0.00 0.00 0.00 5.19
2208 2643 2.023673 TCAAAAACTGTCACTGCCCTG 58.976 47.619 0.00 0.00 0.00 4.45
2210 2645 1.680338 AAAACTGTCACTGCCCTGAC 58.320 50.000 4.29 4.29 40.98 3.51
2282 4411 5.372343 ACATATGAATAGACAAGGGCACA 57.628 39.130 10.38 0.00 0.00 4.57
2288 4417 4.278170 TGAATAGACAAGGGCACAAAACAG 59.722 41.667 0.00 0.00 0.00 3.16
2297 4426 1.404035 GGCACAAAACAGTCGGAAAGT 59.596 47.619 0.00 0.00 0.00 2.66
2300 4429 4.279659 GCACAAAACAGTCGGAAAGTAAG 58.720 43.478 0.00 0.00 0.00 2.34
2328 4457 8.193438 AGCAAGCTGTTAAAATCCAGATATTTC 58.807 33.333 0.00 0.00 0.00 2.17
2380 4509 2.787994 AGCTTGTGAAATCCTCCTGTG 58.212 47.619 0.00 0.00 0.00 3.66
2400 4529 5.984725 TGTGTTCTAACTTGAACCTCTCAA 58.015 37.500 5.15 0.00 43.96 3.02
2527 4656 2.937519 TGTAAAAGGGATGTGTGTGCA 58.062 42.857 0.00 0.00 0.00 4.57
2654 4784 0.945813 GCAATGATCCTCAGCTGAGC 59.054 55.000 34.09 22.39 40.75 4.26
2747 4877 1.593209 CCACACACGCACCGTAGTT 60.593 57.895 0.00 0.00 38.32 2.24
2872 5009 2.420129 GCTTAGGAGAATCGGCAAAGGA 60.420 50.000 0.00 0.00 34.37 3.36
2882 5019 0.601841 CGGCAAAGGACACGGTTAGT 60.602 55.000 0.00 0.00 0.00 2.24
2883 5020 1.601166 GGCAAAGGACACGGTTAGTT 58.399 50.000 0.00 0.00 0.00 2.24
2884 5021 1.951602 GGCAAAGGACACGGTTAGTTT 59.048 47.619 0.00 0.00 0.00 2.66
2885 5022 2.287368 GGCAAAGGACACGGTTAGTTTG 60.287 50.000 0.00 0.00 0.00 2.93
2886 5023 2.356695 GCAAAGGACACGGTTAGTTTGT 59.643 45.455 0.00 0.00 0.00 2.83
2887 5024 3.560896 GCAAAGGACACGGTTAGTTTGTA 59.439 43.478 0.00 0.00 0.00 2.41
2888 5025 4.553351 GCAAAGGACACGGTTAGTTTGTAC 60.553 45.833 0.00 0.00 0.00 2.90
2889 5026 4.677673 AAGGACACGGTTAGTTTGTACT 57.322 40.909 0.00 0.00 35.85 2.73
2890 5027 4.248691 AGGACACGGTTAGTTTGTACTC 57.751 45.455 0.00 0.00 27.21 2.59
2891 5028 3.006217 AGGACACGGTTAGTTTGTACTCC 59.994 47.826 0.00 0.00 27.21 3.85
2892 5029 3.320626 GACACGGTTAGTTTGTACTCCC 58.679 50.000 0.00 0.00 35.78 4.30
2893 5030 2.967887 ACACGGTTAGTTTGTACTCCCT 59.032 45.455 0.00 0.00 35.78 4.20
2894 5031 3.006217 ACACGGTTAGTTTGTACTCCCTC 59.994 47.826 0.00 0.00 35.78 4.30
2895 5032 2.564504 ACGGTTAGTTTGTACTCCCTCC 59.435 50.000 0.00 0.00 35.78 4.30
2896 5033 2.416431 CGGTTAGTTTGTACTCCCTCCG 60.416 54.545 0.00 0.00 35.78 4.63
2897 5034 2.564504 GGTTAGTTTGTACTCCCTCCGT 59.435 50.000 0.00 0.00 35.78 4.69
2898 5035 3.007290 GGTTAGTTTGTACTCCCTCCGTT 59.993 47.826 0.00 0.00 35.78 4.44
2899 5036 4.240888 GTTAGTTTGTACTCCCTCCGTTC 58.759 47.826 0.00 0.00 35.78 3.95
2900 5037 1.622312 AGTTTGTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
2901 5038 1.345415 GTTTGTACTCCCTCCGTTCCA 59.655 52.381 0.00 0.00 0.00 3.53
2902 5039 1.719529 TTGTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
2903 5040 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2904 5041 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
2905 5042 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
2906 5043 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
2907 5044 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2908 5045 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2909 5046 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2910 5047 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2911 5048 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2912 5049 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2913 5050 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2914 5051 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2915 5052 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2916 5053 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2917 5054 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2918 5055 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2919 5056 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2920 5057 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2921 5058 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2922 5059 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2923 5060 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2924 5061 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2925 5062 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2926 5063 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2927 5064 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2928 5065 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
3065 5203 1.350351 GAGACAGGCCATGGATATGCT 59.650 52.381 18.40 11.12 32.79 3.79
3104 5242 3.044235 TGCATGTAGGTCACAACTCAG 57.956 47.619 0.00 0.00 41.55 3.35
3113 5251 3.126831 GGTCACAACTCAGAACTGTCAG 58.873 50.000 0.00 0.00 0.00 3.51
3115 5253 1.869767 CACAACTCAGAACTGTCAGGC 59.130 52.381 4.53 0.00 0.00 4.85
3155 5295 3.931578 TGGTTGTGTTTCTTGGGTTTTG 58.068 40.909 0.00 0.00 0.00 2.44
3166 5306 2.160721 TGGGTTTTGCAGTGGGTTTA 57.839 45.000 0.00 0.00 0.00 2.01
3167 5307 1.757699 TGGGTTTTGCAGTGGGTTTAC 59.242 47.619 0.00 0.00 0.00 2.01
3173 5315 2.254546 TGCAGTGGGTTTACAGAGTG 57.745 50.000 0.00 0.00 0.00 3.51
3176 5318 2.494059 CAGTGGGTTTACAGAGTGGTG 58.506 52.381 0.00 0.00 0.00 4.17
3319 5581 4.407945 TGTAGGGTCTTGGGTAATTCTAGC 59.592 45.833 0.00 0.00 0.00 3.42
3364 5626 1.683011 GCATTAGCTTCAAGCCCAGGA 60.683 52.381 5.53 0.00 43.77 3.86
3365 5627 2.941480 CATTAGCTTCAAGCCCAGGAT 58.059 47.619 5.53 0.00 43.77 3.24
3366 5628 2.425143 TTAGCTTCAAGCCCAGGATG 57.575 50.000 5.53 0.00 43.77 3.51
3367 5629 1.289160 TAGCTTCAAGCCCAGGATGT 58.711 50.000 5.53 0.00 43.77 3.06
3368 5630 0.407139 AGCTTCAAGCCCAGGATGTT 59.593 50.000 5.53 0.00 43.77 2.71
3369 5631 0.529378 GCTTCAAGCCCAGGATGTTG 59.471 55.000 0.00 0.00 34.48 3.33
3370 5632 1.887956 GCTTCAAGCCCAGGATGTTGA 60.888 52.381 0.00 0.00 34.48 3.18
3371 5633 2.089980 CTTCAAGCCCAGGATGTTGAG 58.910 52.381 0.00 0.00 30.86 3.02
3372 5634 1.067295 TCAAGCCCAGGATGTTGAGT 58.933 50.000 0.00 0.00 0.00 3.41
3373 5635 1.003580 TCAAGCCCAGGATGTTGAGTC 59.996 52.381 0.00 0.00 0.00 3.36
3374 5636 0.036010 AAGCCCAGGATGTTGAGTCG 60.036 55.000 0.00 0.00 0.00 4.18
3375 5637 2.109126 GCCCAGGATGTTGAGTCGC 61.109 63.158 0.00 0.00 0.00 5.19
3376 5638 1.599047 CCCAGGATGTTGAGTCGCT 59.401 57.895 0.00 0.00 0.00 4.93
3377 5639 0.824109 CCCAGGATGTTGAGTCGCTA 59.176 55.000 0.00 0.00 0.00 4.26
3378 5640 1.414181 CCCAGGATGTTGAGTCGCTAT 59.586 52.381 0.00 0.00 0.00 2.97
3379 5641 2.628178 CCCAGGATGTTGAGTCGCTATA 59.372 50.000 0.00 0.00 0.00 1.31
3380 5642 3.305676 CCCAGGATGTTGAGTCGCTATAG 60.306 52.174 0.00 0.00 0.00 1.31
3381 5643 3.570125 CCAGGATGTTGAGTCGCTATAGA 59.430 47.826 3.21 0.00 0.00 1.98
3382 5644 4.219507 CCAGGATGTTGAGTCGCTATAGAT 59.780 45.833 3.21 0.00 0.00 1.98
3383 5645 5.279206 CCAGGATGTTGAGTCGCTATAGATT 60.279 44.000 3.21 0.00 0.00 2.40
3384 5646 5.632764 CAGGATGTTGAGTCGCTATAGATTG 59.367 44.000 3.21 0.00 0.00 2.67
3385 5647 4.387256 GGATGTTGAGTCGCTATAGATTGC 59.613 45.833 3.21 0.00 0.00 3.56
3386 5648 4.385358 TGTTGAGTCGCTATAGATTGCA 57.615 40.909 3.21 0.00 0.00 4.08
3387 5649 4.112634 TGTTGAGTCGCTATAGATTGCAC 58.887 43.478 3.21 0.00 0.00 4.57
3388 5650 3.371102 TGAGTCGCTATAGATTGCACC 57.629 47.619 3.21 0.00 0.00 5.01
3389 5651 2.035961 TGAGTCGCTATAGATTGCACCC 59.964 50.000 3.21 0.00 0.00 4.61
3390 5652 2.297597 GAGTCGCTATAGATTGCACCCT 59.702 50.000 3.21 0.00 0.00 4.34
3391 5653 3.497332 AGTCGCTATAGATTGCACCCTA 58.503 45.455 3.21 0.00 0.00 3.53
3392 5654 3.508012 AGTCGCTATAGATTGCACCCTAG 59.492 47.826 3.21 0.00 0.00 3.02
3393 5655 2.231478 TCGCTATAGATTGCACCCTAGC 59.769 50.000 3.21 0.00 0.00 3.42
3394 5656 2.675317 CGCTATAGATTGCACCCTAGCC 60.675 54.545 3.21 0.00 0.00 3.93
3395 5657 2.355209 GCTATAGATTGCACCCTAGCCC 60.355 54.545 3.21 0.00 0.00 5.19
3396 5658 2.124560 ATAGATTGCACCCTAGCCCT 57.875 50.000 0.00 0.00 0.00 5.19
3397 5659 1.893315 TAGATTGCACCCTAGCCCTT 58.107 50.000 0.00 0.00 0.00 3.95
3398 5660 1.002857 AGATTGCACCCTAGCCCTTT 58.997 50.000 0.00 0.00 0.00 3.11
3399 5661 1.359130 AGATTGCACCCTAGCCCTTTT 59.641 47.619 0.00 0.00 0.00 2.27
3400 5662 1.478105 GATTGCACCCTAGCCCTTTTG 59.522 52.381 0.00 0.00 0.00 2.44
3401 5663 0.187361 TTGCACCCTAGCCCTTTTGT 59.813 50.000 0.00 0.00 0.00 2.83
3402 5664 0.251165 TGCACCCTAGCCCTTTTGTC 60.251 55.000 0.00 0.00 0.00 3.18
3403 5665 0.965866 GCACCCTAGCCCTTTTGTCC 60.966 60.000 0.00 0.00 0.00 4.02
3404 5666 0.323451 CACCCTAGCCCTTTTGTCCC 60.323 60.000 0.00 0.00 0.00 4.46
3405 5667 1.306633 CCCTAGCCCTTTTGTCCCC 59.693 63.158 0.00 0.00 0.00 4.81
3406 5668 1.077716 CCTAGCCCTTTTGTCCCCG 60.078 63.158 0.00 0.00 0.00 5.73
3407 5669 1.077716 CTAGCCCTTTTGTCCCCGG 60.078 63.158 0.00 0.00 0.00 5.73
3408 5670 2.552231 CTAGCCCTTTTGTCCCCGGG 62.552 65.000 15.80 15.80 39.76 5.73
3411 5673 3.979497 CCTTTTGTCCCCGGGCCT 61.979 66.667 17.73 0.00 0.00 5.19
3412 5674 2.676471 CTTTTGTCCCCGGGCCTG 60.676 66.667 17.73 3.88 0.00 4.85
3413 5675 4.986708 TTTTGTCCCCGGGCCTGC 62.987 66.667 17.73 4.81 0.00 4.85
3427 5689 4.033776 CTGCGCCCCTCCAAGGAA 62.034 66.667 4.18 0.00 37.67 3.36
3428 5690 3.984193 CTGCGCCCCTCCAAGGAAG 62.984 68.421 4.18 0.00 37.67 3.46
3430 5692 4.033776 CGCCCCTCCAAGGAAGCA 62.034 66.667 8.19 0.00 37.67 3.91
3431 5693 2.440599 GCCCCTCCAAGGAAGCAA 59.559 61.111 0.00 0.00 37.67 3.91
3432 5694 1.228862 GCCCCTCCAAGGAAGCAAA 60.229 57.895 0.00 0.00 37.67 3.68
3433 5695 0.615827 GCCCCTCCAAGGAAGCAAAT 60.616 55.000 0.00 0.00 37.67 2.32
3434 5696 1.942776 CCCCTCCAAGGAAGCAAATT 58.057 50.000 0.00 0.00 37.67 1.82
3435 5697 2.888069 GCCCCTCCAAGGAAGCAAATTA 60.888 50.000 0.00 0.00 37.67 1.40
3436 5698 2.760650 CCCCTCCAAGGAAGCAAATTAC 59.239 50.000 0.00 0.00 37.67 1.89
3437 5699 3.430453 CCCTCCAAGGAAGCAAATTACA 58.570 45.455 0.00 0.00 37.67 2.41
3438 5700 3.831911 CCCTCCAAGGAAGCAAATTACAA 59.168 43.478 0.00 0.00 37.67 2.41
3439 5701 4.321974 CCCTCCAAGGAAGCAAATTACAAC 60.322 45.833 0.00 0.00 37.67 3.32
3440 5702 4.280677 CCTCCAAGGAAGCAAATTACAACA 59.719 41.667 0.00 0.00 37.67 3.33
3441 5703 5.221422 CCTCCAAGGAAGCAAATTACAACAA 60.221 40.000 0.00 0.00 37.67 2.83
3442 5704 5.841810 TCCAAGGAAGCAAATTACAACAAG 58.158 37.500 0.00 0.00 0.00 3.16
3443 5705 5.362430 TCCAAGGAAGCAAATTACAACAAGT 59.638 36.000 0.00 0.00 0.00 3.16
3444 5706 6.048509 CCAAGGAAGCAAATTACAACAAGTT 58.951 36.000 0.00 0.00 0.00 2.66
3445 5707 6.200854 CCAAGGAAGCAAATTACAACAAGTTC 59.799 38.462 0.00 0.00 0.00 3.01
3446 5708 6.463995 AGGAAGCAAATTACAACAAGTTCA 57.536 33.333 0.00 0.00 0.00 3.18
3447 5709 6.507023 AGGAAGCAAATTACAACAAGTTCAG 58.493 36.000 0.00 0.00 0.00 3.02
3448 5710 5.691754 GGAAGCAAATTACAACAAGTTCAGG 59.308 40.000 0.00 0.00 0.00 3.86
3449 5711 5.852282 AGCAAATTACAACAAGTTCAGGT 57.148 34.783 0.00 0.00 0.00 4.00
3450 5712 5.591099 AGCAAATTACAACAAGTTCAGGTG 58.409 37.500 0.00 0.00 0.00 4.00
3451 5713 4.744631 GCAAATTACAACAAGTTCAGGTGG 59.255 41.667 0.00 0.00 0.00 4.61
3452 5714 5.681179 GCAAATTACAACAAGTTCAGGTGGT 60.681 40.000 0.00 0.00 0.00 4.16
3453 5715 6.460399 GCAAATTACAACAAGTTCAGGTGGTA 60.460 38.462 0.00 0.00 0.00 3.25
3454 5716 6.628919 AATTACAACAAGTTCAGGTGGTAC 57.371 37.500 0.00 0.00 0.00 3.34
3455 5717 3.926058 ACAACAAGTTCAGGTGGTACT 57.074 42.857 0.00 0.00 0.00 2.73
3456 5718 3.805207 ACAACAAGTTCAGGTGGTACTC 58.195 45.455 0.00 0.00 0.00 2.59
3457 5719 3.139077 CAACAAGTTCAGGTGGTACTCC 58.861 50.000 0.00 0.00 43.30 3.85
3458 5720 2.404559 ACAAGTTCAGGTGGTACTCCA 58.595 47.619 9.52 0.00 45.79 3.86
3459 5721 2.979678 ACAAGTTCAGGTGGTACTCCAT 59.020 45.455 9.52 0.00 45.79 3.41
3460 5722 3.008049 ACAAGTTCAGGTGGTACTCCATC 59.992 47.826 9.52 0.00 45.79 3.51
3466 5728 2.295253 GGTGGTACTCCATCGTTCTG 57.705 55.000 0.00 0.00 46.20 3.02
3467 5729 1.641577 GTGGTACTCCATCGTTCTGC 58.358 55.000 0.00 0.00 46.20 4.26
3468 5730 1.204941 GTGGTACTCCATCGTTCTGCT 59.795 52.381 0.00 0.00 46.20 4.24
3469 5731 2.426024 GTGGTACTCCATCGTTCTGCTA 59.574 50.000 0.00 0.00 46.20 3.49
3470 5732 3.093814 TGGTACTCCATCGTTCTGCTAA 58.906 45.455 0.00 0.00 39.03 3.09
3471 5733 3.512329 TGGTACTCCATCGTTCTGCTAAA 59.488 43.478 0.00 0.00 39.03 1.85
3472 5734 4.020928 TGGTACTCCATCGTTCTGCTAAAA 60.021 41.667 0.00 0.00 39.03 1.52
3473 5735 5.116882 GGTACTCCATCGTTCTGCTAAAAT 58.883 41.667 0.00 0.00 0.00 1.82
3474 5736 6.127281 TGGTACTCCATCGTTCTGCTAAAATA 60.127 38.462 0.00 0.00 39.03 1.40
3503 5766 7.533289 TTTTTCGAGAAAGGGTGGATTTTAT 57.467 32.000 0.00 0.00 0.00 1.40
3527 5790 8.767478 ATTTAACTCAAAATGAAGCATCAAGG 57.233 30.769 0.00 0.00 39.49 3.61
3538 5827 4.263905 TGAAGCATCAAGGGGATACAAACT 60.264 41.667 0.00 0.00 33.95 2.66
3541 5830 4.079558 AGCATCAAGGGGATACAAACTCAT 60.080 41.667 0.00 0.00 33.95 2.90
3594 5884 5.762825 GATGCACACATCCATCATAAACT 57.237 39.130 0.00 0.00 45.94 2.66
3605 5895 5.372373 TCCATCATAAACTCACACACACAA 58.628 37.500 0.00 0.00 0.00 3.33
3712 6011 5.717078 TCGACAAACTACAACTATGACCT 57.283 39.130 0.00 0.00 0.00 3.85
3741 6040 4.204799 CACCAATCACCTCATGACATCAT 58.795 43.478 0.00 0.00 41.24 2.45
3777 6076 0.380378 TTCAACAGCAACGCCTTCAC 59.620 50.000 0.00 0.00 0.00 3.18
3791 6090 2.771763 CTTCACGAAGGGAGCAGCGT 62.772 60.000 0.00 0.00 37.48 5.07
3801 6100 2.280119 AGCAGCGTTCAAGCGTCA 60.280 55.556 0.00 0.00 43.00 4.35
3826 6133 2.916269 TCACCAGATCCAACCACCAATA 59.084 45.455 0.00 0.00 0.00 1.90
3828 6135 2.242196 ACCAGATCCAACCACCAATAGG 59.758 50.000 0.00 0.00 42.21 2.57
3832 6139 0.331278 TCCAACCACCAATAGGCAGG 59.669 55.000 0.00 0.00 39.06 4.85
3853 6160 4.167307 AGGTTCTAGGTTTTCACCCTGAAA 59.833 41.667 0.00 0.00 45.63 2.69
3892 6199 2.807967 CCGAGCAATGTCTTCAACAAGA 59.192 45.455 0.00 0.00 42.37 3.02
3897 6204 6.347644 CGAGCAATGTCTTCAACAAGATAACA 60.348 38.462 0.00 0.00 42.37 2.41
3932 6245 3.430236 GCCATTGCCAGTTATAACCAACC 60.430 47.826 12.05 0.00 0.00 3.77
4001 6317 1.021968 GTTGTCGCCACCACTTTTCT 58.978 50.000 0.00 0.00 0.00 2.52
4018 6334 2.437180 TGCGATCCCAGCAGCTTG 60.437 61.111 0.00 0.00 40.01 4.01
4019 6335 3.885521 GCGATCCCAGCAGCTTGC 61.886 66.667 0.00 0.47 45.46 4.01
4028 6344 2.360350 GCAGCTTGCACTGGGCTA 60.360 61.111 2.50 0.00 44.26 3.93
4029 6345 2.694760 GCAGCTTGCACTGGGCTAC 61.695 63.158 2.50 0.00 44.26 3.58
4030 6346 1.002868 CAGCTTGCACTGGGCTACT 60.003 57.895 2.50 0.00 45.15 2.57
4031 6347 1.023513 CAGCTTGCACTGGGCTACTC 61.024 60.000 2.50 0.00 45.15 2.59
4032 6348 2.103042 GCTTGCACTGGGCTACTCG 61.103 63.158 2.50 0.00 45.15 4.18
4033 6349 1.591703 CTTGCACTGGGCTACTCGA 59.408 57.895 2.50 0.00 45.15 4.04
4034 6350 0.737715 CTTGCACTGGGCTACTCGAC 60.738 60.000 2.50 0.00 45.15 4.20
4035 6351 1.185618 TTGCACTGGGCTACTCGACT 61.186 55.000 2.50 0.00 45.15 4.18
4036 6352 0.323087 TGCACTGGGCTACTCGACTA 60.323 55.000 2.50 0.00 45.15 2.59
4037 6353 0.100861 GCACTGGGCTACTCGACTAC 59.899 60.000 0.00 0.00 40.25 2.73
4038 6354 0.739561 CACTGGGCTACTCGACTACC 59.260 60.000 0.00 0.00 0.00 3.18
4039 6355 0.330604 ACTGGGCTACTCGACTACCA 59.669 55.000 0.00 0.00 0.00 3.25
4040 6356 0.739561 CTGGGCTACTCGACTACCAC 59.260 60.000 0.00 0.00 0.00 4.16
4041 6357 0.682209 TGGGCTACTCGACTACCACC 60.682 60.000 0.00 0.00 0.00 4.61
4042 6358 1.722636 GGGCTACTCGACTACCACCG 61.723 65.000 0.00 0.00 0.00 4.94
4043 6359 1.063811 GCTACTCGACTACCACCGC 59.936 63.158 0.00 0.00 0.00 5.68
4044 6360 1.375098 GCTACTCGACTACCACCGCT 61.375 60.000 0.00 0.00 0.00 5.52
4045 6361 0.377554 CTACTCGACTACCACCGCTG 59.622 60.000 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.450014 TGTCATTATTTGCTTCCCTTTGTTCTA 59.550 33.333 0.00 0.00 0.00 2.10
22 23 9.453572 TCTATCATATGTCATTATTTGCTTCCC 57.546 33.333 1.90 0.00 0.00 3.97
38 39 4.156739 TCGCCTGTAGTGCTCTATCATATG 59.843 45.833 0.00 0.00 0.00 1.78
55 56 0.107993 ATCACATGTGAGGTCGCCTG 60.108 55.000 30.63 0.45 43.61 4.85
60 61 3.813443 AGGCATTATCACATGTGAGGTC 58.187 45.455 30.63 21.07 43.61 3.85
62 63 5.219343 TCTAGGCATTATCACATGTGAGG 57.781 43.478 30.63 20.67 43.61 3.86
63 64 5.695363 CACTCTAGGCATTATCACATGTGAG 59.305 44.000 30.63 19.22 43.61 3.51
64 65 5.453762 CCACTCTAGGCATTATCACATGTGA 60.454 44.000 29.67 29.67 44.59 3.58
97 98 1.752198 CGTGACAAGGGGAAGTCCA 59.248 57.895 0.00 0.00 37.91 4.02
103 104 3.636231 CCAGCCGTGACAAGGGGA 61.636 66.667 9.59 0.00 0.00 4.81
104 105 4.722700 CCCAGCCGTGACAAGGGG 62.723 72.222 9.59 2.87 35.83 4.79
108 109 0.179004 ATTTCACCCAGCCGTGACAA 60.179 50.000 0.00 0.00 42.37 3.18
114 115 2.817258 TGAGTTTAATTTCACCCAGCCG 59.183 45.455 0.00 0.00 0.00 5.52
149 150 0.252479 ACCAGCTGAGCTTCCATGAG 59.748 55.000 17.39 0.00 36.40 2.90
172 173 6.017605 CCATCAACCACTCTAAGCAACATATC 60.018 42.308 0.00 0.00 0.00 1.63
173 174 5.824624 CCATCAACCACTCTAAGCAACATAT 59.175 40.000 0.00 0.00 0.00 1.78
178 179 4.072131 GTTCCATCAACCACTCTAAGCAA 58.928 43.478 0.00 0.00 0.00 3.91
211 212 0.468226 AAGAGCACCACGACAGGAAA 59.532 50.000 0.00 0.00 0.00 3.13
212 213 0.249868 CAAGAGCACCACGACAGGAA 60.250 55.000 0.00 0.00 0.00 3.36
213 214 1.112916 TCAAGAGCACCACGACAGGA 61.113 55.000 0.00 0.00 0.00 3.86
214 215 0.249868 TTCAAGAGCACCACGACAGG 60.250 55.000 0.00 0.00 0.00 4.00
215 216 1.143305 CTTCAAGAGCACCACGACAG 58.857 55.000 0.00 0.00 0.00 3.51
216 217 3.289128 CTTCAAGAGCACCACGACA 57.711 52.632 0.00 0.00 0.00 4.35
238 239 2.372264 CCTCCATGCAAGCACATAGTT 58.628 47.619 0.00 0.00 0.00 2.24
255 256 3.034635 TCTAGGCAAGAGACAATCCCTC 58.965 50.000 0.00 0.00 0.00 4.30
298 304 8.985315 TTGACTGCAATAATAGAATCCATCTT 57.015 30.769 0.00 0.00 39.71 2.40
311 317 3.485394 TGGACAAGCTTGACTGCAATAA 58.515 40.909 32.50 4.84 32.68 1.40
334 340 7.565323 AAATCAATCTATCAGTCTCCTTTGC 57.435 36.000 0.00 0.00 0.00 3.68
467 473 2.043992 TGGTTCTTCCTTCAGTCCGAA 58.956 47.619 0.00 0.00 37.07 4.30
471 477 4.008074 TGTCATGGTTCTTCCTTCAGTC 57.992 45.455 0.00 0.00 37.07 3.51
472 478 4.330250 CATGTCATGGTTCTTCCTTCAGT 58.670 43.478 4.78 0.00 37.07 3.41
494 500 7.891498 ATAAAATCAGTACCATAACCCAACC 57.109 36.000 0.00 0.00 0.00 3.77
588 594 4.325658 CCCTCAATCCCCATTCTCTTTTCT 60.326 45.833 0.00 0.00 0.00 2.52
589 595 3.956848 CCCTCAATCCCCATTCTCTTTTC 59.043 47.826 0.00 0.00 0.00 2.29
591 597 3.201363 TCCCTCAATCCCCATTCTCTTT 58.799 45.455 0.00 0.00 0.00 2.52
596 602 3.203040 TCTCTTTCCCTCAATCCCCATTC 59.797 47.826 0.00 0.00 0.00 2.67
597 603 3.201363 TCTCTTTCCCTCAATCCCCATT 58.799 45.455 0.00 0.00 0.00 3.16
599 605 2.200081 CTCTCTTTCCCTCAATCCCCA 58.800 52.381 0.00 0.00 0.00 4.96
600 606 1.492599 CCTCTCTTTCCCTCAATCCCC 59.507 57.143 0.00 0.00 0.00 4.81
602 608 2.158827 GCTCCTCTCTTTCCCTCAATCC 60.159 54.545 0.00 0.00 0.00 3.01
634 640 2.294074 GGCGTATCCTAAATGGTTGCA 58.706 47.619 0.00 0.00 37.07 4.08
637 643 4.806286 GCCTATGGCGTATCCTAAATGGTT 60.806 45.833 0.00 0.00 39.62 3.67
660 666 1.002366 CGAGCGAACCAATCTTCCTG 58.998 55.000 0.00 0.00 0.00 3.86
664 670 0.899720 TACCCGAGCGAACCAATCTT 59.100 50.000 0.00 0.00 0.00 2.40
685 691 0.109319 CCATTTTTCCGGACGGCTTG 60.109 55.000 1.83 0.00 34.68 4.01
694 700 8.309163 TCATTTTTCTTCATTCCATTTTTCCG 57.691 30.769 0.00 0.00 0.00 4.30
697 703 9.070179 CCCTTCATTTTTCTTCATTCCATTTTT 57.930 29.630 0.00 0.00 0.00 1.94
698 704 8.439172 TCCCTTCATTTTTCTTCATTCCATTTT 58.561 29.630 0.00 0.00 0.00 1.82
699 705 7.976712 TCCCTTCATTTTTCTTCATTCCATTT 58.023 30.769 0.00 0.00 0.00 2.32
701 707 7.744678 ATCCCTTCATTTTTCTTCATTCCAT 57.255 32.000 0.00 0.00 0.00 3.41
702 708 8.663209 TTATCCCTTCATTTTTCTTCATTCCA 57.337 30.769 0.00 0.00 0.00 3.53
703 709 9.942850 TTTTATCCCTTCATTTTTCTTCATTCC 57.057 29.630 0.00 0.00 0.00 3.01
746 752 5.554822 TCCATACGTGCCAAATAGTTTTC 57.445 39.130 0.00 0.00 0.00 2.29
747 753 5.968528 TTCCATACGTGCCAAATAGTTTT 57.031 34.783 0.00 0.00 0.00 2.43
748 754 5.650266 TCATTCCATACGTGCCAAATAGTTT 59.350 36.000 0.00 0.00 0.00 2.66
749 755 5.189928 TCATTCCATACGTGCCAAATAGTT 58.810 37.500 0.00 0.00 0.00 2.24
750 756 4.776349 TCATTCCATACGTGCCAAATAGT 58.224 39.130 0.00 0.00 0.00 2.12
759 765 6.851609 TCCATTTTTCTTCATTCCATACGTG 58.148 36.000 0.00 0.00 0.00 4.49
761 767 7.812191 TGTTTCCATTTTTCTTCATTCCATACG 59.188 33.333 0.00 0.00 0.00 3.06
778 784 2.716424 TCCCACCTTCTCTGTTTCCATT 59.284 45.455 0.00 0.00 0.00 3.16
779 785 2.348472 TCCCACCTTCTCTGTTTCCAT 58.652 47.619 0.00 0.00 0.00 3.41
780 786 1.814429 TCCCACCTTCTCTGTTTCCA 58.186 50.000 0.00 0.00 0.00 3.53
783 789 3.204382 TCCTTTTCCCACCTTCTCTGTTT 59.796 43.478 0.00 0.00 0.00 2.83
788 794 3.721087 TGATCCTTTTCCCACCTTCTC 57.279 47.619 0.00 0.00 0.00 2.87
798 804 8.748380 AATTTTCTCGTTTCATGATCCTTTTC 57.252 30.769 0.00 0.00 0.00 2.29
803 809 7.076842 TCAGAATTTTCTCGTTTCATGATCC 57.923 36.000 0.00 0.00 34.74 3.36
810 816 6.211664 TCGTCTTCAGAATTTTCTCGTTTC 57.788 37.500 0.00 0.00 34.74 2.78
814 820 4.486090 TCCTCGTCTTCAGAATTTTCTCG 58.514 43.478 0.00 0.00 34.74 4.04
832 838 5.995446 AGGGAATTGTAATCTCACTTCCTC 58.005 41.667 12.86 6.20 42.71 3.71
872 1111 9.715123 CAACAAAATACTCGCATACATTATTGA 57.285 29.630 0.00 0.00 0.00 2.57
884 1154 8.118607 GGTATTACTAACCAACAAAATACTCGC 58.881 37.037 0.00 0.00 36.96 5.03
885 1155 9.374838 AGGTATTACTAACCAACAAAATACTCG 57.625 33.333 0.00 0.00 39.64 4.18
900 1170 7.130775 GGGGATAGCTGGATAGGTATTACTAA 58.869 42.308 0.00 0.00 45.12 2.24
904 1174 4.016851 ACGGGGATAGCTGGATAGGTATTA 60.017 45.833 0.00 0.00 45.12 0.98
926 1265 1.950973 GCCGAAGTGGGAGAGGAGAC 61.951 65.000 0.00 0.00 38.63 3.36
934 1273 2.528127 TGGAAGGCCGAAGTGGGA 60.528 61.111 0.00 0.00 38.63 4.37
935 1274 2.359975 GTGGAAGGCCGAAGTGGG 60.360 66.667 0.00 0.00 38.63 4.61
945 1287 2.359975 GGAAGTGGGCGTGGAAGG 60.360 66.667 0.00 0.00 0.00 3.46
971 1313 0.909610 AAGAAGATGGGGGCGAGTGA 60.910 55.000 0.00 0.00 0.00 3.41
1382 1735 5.205056 ACCAAAACCATCAGTCCTTTGTAA 58.795 37.500 0.00 0.00 28.22 2.41
1415 1768 2.593346 AGCGAGCTAAGAATGGTCAG 57.407 50.000 0.00 0.00 32.79 3.51
1655 2014 1.335051 GGAGAAAAGAAACAGGCGCAC 60.335 52.381 10.83 0.00 0.00 5.34
1705 2064 3.077556 ATCTCCGCGTGCTCCCTT 61.078 61.111 4.92 0.00 0.00 3.95
1711 2070 1.566563 CATTAGCATCTCCGCGTGC 59.433 57.895 11.10 11.10 41.57 5.34
1726 2085 6.770286 ATCAATGATACCTGGTACTCCATT 57.230 37.500 9.09 14.87 43.43 3.16
1762 2121 8.889717 CGACAGGACAGTGGTATTAATATTTTT 58.110 33.333 0.00 0.00 0.00 1.94
1766 2125 6.513180 CACGACAGGACAGTGGTATTAATAT 58.487 40.000 0.00 0.00 32.68 1.28
1778 2137 1.064803 CTAGCTAGCACGACAGGACAG 59.935 57.143 18.83 0.00 0.00 3.51
1829 2189 3.668447 GTCTGTTCTGATGGACACACAT 58.332 45.455 0.00 0.00 0.00 3.21
2012 2372 4.657039 AGTGAACTACTGTTACTTTCCCCA 59.343 41.667 0.00 0.00 38.49 4.96
2032 2467 5.881447 ACTAACTTACGCTGTCATCTAGTG 58.119 41.667 0.00 0.00 0.00 2.74
2033 2468 6.260493 CCTACTAACTTACGCTGTCATCTAGT 59.740 42.308 0.00 0.00 0.00 2.57
2040 2475 5.809719 AGTACCTACTAACTTACGCTGTC 57.190 43.478 0.00 0.00 34.13 3.51
2045 2480 7.408132 TGCGTATAGTACCTACTAACTTACG 57.592 40.000 14.38 14.38 42.37 3.18
2053 2488 8.510505 GTTATAGCTTTGCGTATAGTACCTACT 58.489 37.037 0.00 0.00 40.24 2.57
2054 2489 8.510505 AGTTATAGCTTTGCGTATAGTACCTAC 58.489 37.037 0.00 0.00 0.00 3.18
2055 2490 8.509690 CAGTTATAGCTTTGCGTATAGTACCTA 58.490 37.037 0.00 0.00 0.00 3.08
2056 2491 7.230108 TCAGTTATAGCTTTGCGTATAGTACCT 59.770 37.037 0.00 0.00 0.00 3.08
2058 2493 8.967552 ATCAGTTATAGCTTTGCGTATAGTAC 57.032 34.615 0.00 0.00 0.00 2.73
2066 2501 7.795734 CAGTTGATAATCAGTTATAGCTTTGCG 59.204 37.037 0.00 0.00 30.75 4.85
2078 2513 4.641989 GGCCATGTTCAGTTGATAATCAGT 59.358 41.667 0.00 0.00 0.00 3.41
2098 2533 2.191128 ACATCTGTTTGACTGAGGCC 57.809 50.000 0.00 0.00 32.30 5.19
2099 2534 5.886960 ATTTACATCTGTTTGACTGAGGC 57.113 39.130 0.59 0.00 32.30 4.70
2130 2565 3.347216 ACCAGGTGCATAACTGATCAAC 58.653 45.455 15.06 0.00 36.86 3.18
2189 2624 2.023673 TCAGGGCAGTGACAGTTTTTG 58.976 47.619 0.00 0.00 0.00 2.44
2203 2638 3.044305 GTGAGCACACGTCAGGGC 61.044 66.667 0.00 0.00 37.28 5.19
2221 4319 6.532365 TTTTCAAACACAACACAGTTTTCC 57.468 33.333 0.00 0.00 35.90 3.13
2256 4384 7.831690 TGTGCCCTTGTCTATTCATATGTTTTA 59.168 33.333 1.90 0.00 0.00 1.52
2282 4411 5.362263 TGCTACTTACTTTCCGACTGTTTT 58.638 37.500 0.00 0.00 0.00 2.43
2288 4417 3.368236 CAGCTTGCTACTTACTTTCCGAC 59.632 47.826 0.00 0.00 0.00 4.79
2297 4426 7.165485 TCTGGATTTTAACAGCTTGCTACTTA 58.835 34.615 0.00 0.00 34.76 2.24
2300 4429 5.880054 TCTGGATTTTAACAGCTTGCTAC 57.120 39.130 0.00 0.00 34.76 3.58
2328 4457 3.604875 AATGAAAGCAGCAAATGAGGG 57.395 42.857 0.00 0.00 0.00 4.30
2400 4529 3.068590 CCAACTCCATTGCTGAAACAACT 59.931 43.478 0.00 0.00 36.93 3.16
2402 4531 2.224018 GCCAACTCCATTGCTGAAACAA 60.224 45.455 0.00 0.00 36.93 2.83
2527 4656 3.057315 CAGGAATTCATTTGGTCGCAGTT 60.057 43.478 7.93 0.00 0.00 3.16
2582 4712 5.536538 TGAACATTTTAACTATGGTGTGGCA 59.463 36.000 0.00 0.00 0.00 4.92
2654 4784 6.292389 AGAAATTGACTCTCAACAAAGTCG 57.708 37.500 0.00 0.00 43.91 4.18
2747 4877 6.018588 CACAAAATGAAGCAAAGCATCTCAAA 60.019 34.615 0.00 0.00 0.00 2.69
2872 5009 2.967887 AGGGAGTACAAACTAACCGTGT 59.032 45.455 0.00 0.00 37.72 4.49
2882 5019 1.719529 TGGAACGGAGGGAGTACAAA 58.280 50.000 0.00 0.00 0.00 2.83
2883 5020 1.719529 TTGGAACGGAGGGAGTACAA 58.280 50.000 0.00 0.00 0.00 2.41
2884 5021 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
2885 5022 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2886 5023 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2887 5024 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2888 5025 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2889 5026 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2890 5027 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2891 5028 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2892 5029 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2893 5030 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2894 5031 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2895 5032 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2896 5033 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2897 5034 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2898 5035 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2899 5036 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2900 5037 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2901 5038 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2902 5039 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2903 5040 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2904 5041 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2905 5042 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2906 5043 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2907 5044 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
2908 5045 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
2909 5046 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
2910 5047 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
2911 5048 7.341030 AGTACAAAGTTAGTACAAAGTTGGGT 58.659 34.615 6.30 0.00 43.24 4.51
2912 5049 7.797038 AGTACAAAGTTAGTACAAAGTTGGG 57.203 36.000 6.30 0.00 43.24 4.12
2913 5050 8.671028 ACAAGTACAAAGTTAGTACAAAGTTGG 58.329 33.333 6.30 0.00 43.24 3.77
2914 5051 9.485591 CACAAGTACAAAGTTAGTACAAAGTTG 57.514 33.333 6.30 4.59 43.24 3.16
2915 5052 9.439500 TCACAAGTACAAAGTTAGTACAAAGTT 57.561 29.630 6.30 0.00 43.24 2.66
2916 5053 9.439500 TTCACAAGTACAAAGTTAGTACAAAGT 57.561 29.630 6.30 0.00 43.24 2.66
2920 5057 8.392612 GCTTTTCACAAGTACAAAGTTAGTACA 58.607 33.333 6.30 0.00 43.24 2.90
2921 5058 8.392612 TGCTTTTCACAAGTACAAAGTTAGTAC 58.607 33.333 0.00 0.00 41.59 2.73
2922 5059 8.495361 TGCTTTTCACAAGTACAAAGTTAGTA 57.505 30.769 0.00 0.00 0.00 1.82
2923 5060 7.385778 TGCTTTTCACAAGTACAAAGTTAGT 57.614 32.000 0.00 0.00 0.00 2.24
2924 5061 7.968405 AGTTGCTTTTCACAAGTACAAAGTTAG 59.032 33.333 0.00 0.00 0.00 2.34
2925 5062 7.753132 CAGTTGCTTTTCACAAGTACAAAGTTA 59.247 33.333 0.00 0.00 0.00 2.24
2926 5063 6.586082 CAGTTGCTTTTCACAAGTACAAAGTT 59.414 34.615 0.00 0.00 0.00 2.66
2927 5064 6.072175 TCAGTTGCTTTTCACAAGTACAAAGT 60.072 34.615 0.00 0.00 0.00 2.66
2928 5065 6.321717 TCAGTTGCTTTTCACAAGTACAAAG 58.678 36.000 0.00 0.00 0.00 2.77
2960 5097 2.396590 AGTAAAACATCCGATGCCGT 57.603 45.000 8.36 0.00 0.00 5.68
3058 5196 1.607628 CCCTGAGCAGCAAAGCATATC 59.392 52.381 0.00 0.00 36.85 1.63
3065 5203 0.700564 ATCTTCCCCTGAGCAGCAAA 59.299 50.000 0.00 0.00 0.00 3.68
3115 5253 2.559785 GTGGTTGGCTGATCCACTG 58.440 57.895 6.35 0.00 46.55 3.66
3137 5277 3.007398 ACTGCAAAACCCAAGAAACACAA 59.993 39.130 0.00 0.00 0.00 3.33
3155 5295 1.202770 ACCACTCTGTAAACCCACTGC 60.203 52.381 0.00 0.00 0.00 4.40
3166 5306 2.116238 ACACCTTACACACCACTCTGT 58.884 47.619 0.00 0.00 0.00 3.41
3167 5307 2.910688 ACACCTTACACACCACTCTG 57.089 50.000 0.00 0.00 0.00 3.35
3173 5315 1.003223 GACGCAAACACCTTACACACC 60.003 52.381 0.00 0.00 0.00 4.16
3176 5318 1.529865 GAGGACGCAAACACCTTACAC 59.470 52.381 0.00 0.00 33.89 2.90
3266 5520 5.863397 TCCTTGCTTTATTGCGAATTTCAAG 59.137 36.000 0.00 0.00 35.36 3.02
3319 5581 1.396301 GCAGCGAAGAACAAGATCAGG 59.604 52.381 0.00 0.00 0.00 3.86
3364 5626 4.747108 GTGCAATCTATAGCGACTCAACAT 59.253 41.667 0.00 0.00 0.00 2.71
3365 5627 4.112634 GTGCAATCTATAGCGACTCAACA 58.887 43.478 0.00 0.00 0.00 3.33
3366 5628 3.491267 GGTGCAATCTATAGCGACTCAAC 59.509 47.826 0.00 0.00 0.00 3.18
3367 5629 3.492656 GGGTGCAATCTATAGCGACTCAA 60.493 47.826 0.00 0.00 0.00 3.02
3368 5630 2.035961 GGGTGCAATCTATAGCGACTCA 59.964 50.000 0.00 0.00 0.00 3.41
3369 5631 2.297597 AGGGTGCAATCTATAGCGACTC 59.702 50.000 0.00 0.00 0.00 3.36
3370 5632 2.320781 AGGGTGCAATCTATAGCGACT 58.679 47.619 0.00 0.00 0.00 4.18
3371 5633 2.821991 AGGGTGCAATCTATAGCGAC 57.178 50.000 0.00 0.00 0.00 5.19
3372 5634 2.231478 GCTAGGGTGCAATCTATAGCGA 59.769 50.000 0.00 0.00 0.00 4.93
3373 5635 2.611518 GCTAGGGTGCAATCTATAGCG 58.388 52.381 0.00 0.00 0.00 4.26
3374 5636 2.355209 GGGCTAGGGTGCAATCTATAGC 60.355 54.545 0.00 0.00 35.91 2.97
3375 5637 3.177228 AGGGCTAGGGTGCAATCTATAG 58.823 50.000 0.00 0.00 34.04 1.31
3376 5638 3.275848 AGGGCTAGGGTGCAATCTATA 57.724 47.619 0.00 0.00 34.04 1.31
3377 5639 2.124560 AGGGCTAGGGTGCAATCTAT 57.875 50.000 0.00 0.00 34.04 1.98
3378 5640 1.893315 AAGGGCTAGGGTGCAATCTA 58.107 50.000 0.00 0.00 34.04 1.98
3379 5641 1.002857 AAAGGGCTAGGGTGCAATCT 58.997 50.000 0.00 0.00 34.04 2.40
3380 5642 1.478105 CAAAAGGGCTAGGGTGCAATC 59.522 52.381 0.00 0.00 34.04 2.67
3381 5643 1.203174 ACAAAAGGGCTAGGGTGCAAT 60.203 47.619 0.00 0.00 34.04 3.56
3382 5644 0.187361 ACAAAAGGGCTAGGGTGCAA 59.813 50.000 0.00 0.00 34.04 4.08
3383 5645 0.251165 GACAAAAGGGCTAGGGTGCA 60.251 55.000 0.00 0.00 34.04 4.57
3384 5646 0.965866 GGACAAAAGGGCTAGGGTGC 60.966 60.000 0.00 0.00 0.00 5.01
3385 5647 0.323451 GGGACAAAAGGGCTAGGGTG 60.323 60.000 0.00 0.00 0.00 4.61
3386 5648 1.506907 GGGGACAAAAGGGCTAGGGT 61.507 60.000 0.00 0.00 0.00 4.34
3387 5649 1.306633 GGGGACAAAAGGGCTAGGG 59.693 63.158 0.00 0.00 0.00 3.53
3388 5650 1.077716 CGGGGACAAAAGGGCTAGG 60.078 63.158 0.00 0.00 0.00 3.02
3389 5651 1.077716 CCGGGGACAAAAGGGCTAG 60.078 63.158 0.00 0.00 0.00 3.42
3390 5652 2.608550 CCCGGGGACAAAAGGGCTA 61.609 63.158 14.71 0.00 37.07 3.93
3391 5653 3.979497 CCCGGGGACAAAAGGGCT 61.979 66.667 14.71 0.00 37.07 5.19
3394 5656 3.979497 AGGCCCGGGGACAAAAGG 61.979 66.667 23.94 0.00 29.21 3.11
3395 5657 2.676471 CAGGCCCGGGGACAAAAG 60.676 66.667 23.94 3.76 29.21 2.27
3396 5658 4.986708 GCAGGCCCGGGGACAAAA 62.987 66.667 23.94 0.00 29.21 2.44
3410 5672 3.984193 CTTCCTTGGAGGGGCGCAG 62.984 68.421 10.83 0.00 35.59 5.18
3411 5673 4.033776 CTTCCTTGGAGGGGCGCA 62.034 66.667 10.83 0.00 35.59 6.09
3413 5675 3.567579 TTGCTTCCTTGGAGGGGCG 62.568 63.158 1.03 0.00 37.34 6.13
3414 5676 0.615827 ATTTGCTTCCTTGGAGGGGC 60.616 55.000 1.03 3.37 35.59 5.80
3415 5677 1.942776 AATTTGCTTCCTTGGAGGGG 58.057 50.000 1.03 0.00 35.59 4.79
3416 5678 3.430453 TGTAATTTGCTTCCTTGGAGGG 58.570 45.455 1.03 0.00 35.59 4.30
3417 5679 4.280677 TGTTGTAATTTGCTTCCTTGGAGG 59.719 41.667 0.00 0.00 36.46 4.30
3418 5680 5.452078 TGTTGTAATTTGCTTCCTTGGAG 57.548 39.130 0.00 0.00 0.00 3.86
3419 5681 5.362430 ACTTGTTGTAATTTGCTTCCTTGGA 59.638 36.000 0.00 0.00 0.00 3.53
3420 5682 5.600696 ACTTGTTGTAATTTGCTTCCTTGG 58.399 37.500 0.00 0.00 0.00 3.61
3421 5683 6.756074 TGAACTTGTTGTAATTTGCTTCCTTG 59.244 34.615 0.00 0.00 0.00 3.61
3422 5684 6.872920 TGAACTTGTTGTAATTTGCTTCCTT 58.127 32.000 0.00 0.00 0.00 3.36
3423 5685 6.461509 CCTGAACTTGTTGTAATTTGCTTCCT 60.462 38.462 0.00 0.00 0.00 3.36
3424 5686 5.691754 CCTGAACTTGTTGTAATTTGCTTCC 59.308 40.000 0.00 0.00 0.00 3.46
3425 5687 6.198966 CACCTGAACTTGTTGTAATTTGCTTC 59.801 38.462 0.00 0.00 0.00 3.86
3426 5688 6.042143 CACCTGAACTTGTTGTAATTTGCTT 58.958 36.000 0.00 0.00 0.00 3.91
3427 5689 5.451798 CCACCTGAACTTGTTGTAATTTGCT 60.452 40.000 0.00 0.00 0.00 3.91
3428 5690 4.744631 CCACCTGAACTTGTTGTAATTTGC 59.255 41.667 0.00 0.00 0.00 3.68
3429 5691 5.901552 ACCACCTGAACTTGTTGTAATTTG 58.098 37.500 0.00 0.00 0.00 2.32
3430 5692 6.831868 AGTACCACCTGAACTTGTTGTAATTT 59.168 34.615 0.00 0.00 0.00 1.82
3431 5693 6.362248 AGTACCACCTGAACTTGTTGTAATT 58.638 36.000 0.00 0.00 0.00 1.40
3432 5694 5.937111 AGTACCACCTGAACTTGTTGTAAT 58.063 37.500 0.00 0.00 0.00 1.89
3433 5695 5.362105 AGTACCACCTGAACTTGTTGTAA 57.638 39.130 0.00 0.00 0.00 2.41
3434 5696 4.202284 GGAGTACCACCTGAACTTGTTGTA 60.202 45.833 0.00 0.00 35.97 2.41
3435 5697 3.433173 GGAGTACCACCTGAACTTGTTGT 60.433 47.826 0.00 0.00 35.97 3.32
3436 5698 3.139077 GGAGTACCACCTGAACTTGTTG 58.861 50.000 0.00 0.00 35.97 3.33
3437 5699 2.775384 TGGAGTACCACCTGAACTTGTT 59.225 45.455 7.95 0.00 41.77 2.83
3438 5700 2.404559 TGGAGTACCACCTGAACTTGT 58.595 47.619 7.95 0.00 41.77 3.16
3450 5712 3.795623 TTAGCAGAACGATGGAGTACC 57.204 47.619 0.00 0.00 0.00 3.34
3451 5713 6.979238 AGTATTTTAGCAGAACGATGGAGTAC 59.021 38.462 0.00 0.00 0.00 2.73
3452 5714 7.108841 AGTATTTTAGCAGAACGATGGAGTA 57.891 36.000 0.00 0.00 0.00 2.59
3453 5715 5.978814 AGTATTTTAGCAGAACGATGGAGT 58.021 37.500 0.00 0.00 0.00 3.85
3454 5716 6.910536 AAGTATTTTAGCAGAACGATGGAG 57.089 37.500 0.00 0.00 0.00 3.86
3487 5750 9.990360 TTTGAGTTAAATAAAATCCACCCTTTC 57.010 29.630 0.00 0.00 31.05 2.62
3503 5766 7.153985 CCCTTGATGCTTCATTTTGAGTTAAA 58.846 34.615 2.75 0.00 0.00 1.52
3527 5790 7.119846 GGTATATGCTCAATGAGTTTGTATCCC 59.880 40.741 12.29 3.04 36.65 3.85
3538 5827 1.003118 GGCCGGGTATATGCTCAATGA 59.997 52.381 2.18 0.00 0.00 2.57
3541 5830 0.685097 GAGGCCGGGTATATGCTCAA 59.315 55.000 2.18 0.00 0.00 3.02
3582 5871 4.967036 TGTGTGTGTGAGTTTATGATGGA 58.033 39.130 0.00 0.00 0.00 3.41
3586 5875 6.804295 GTGTTTTTGTGTGTGTGAGTTTATGA 59.196 34.615 0.00 0.00 0.00 2.15
3589 5878 5.147865 CGTGTTTTTGTGTGTGTGAGTTTA 58.852 37.500 0.00 0.00 0.00 2.01
3594 5884 1.537638 AGCGTGTTTTTGTGTGTGTGA 59.462 42.857 0.00 0.00 0.00 3.58
3605 5895 1.339610 TGCTATTTGCCAGCGTGTTTT 59.660 42.857 0.00 0.00 42.13 2.43
3633 5928 4.273724 GCTTAGGCATAGCTTTGGTCTTAC 59.726 45.833 6.29 0.00 38.54 2.34
3665 5960 6.001460 TCGTGGATTTGATAACTTCAGGTTT 58.999 36.000 0.00 0.00 39.17 3.27
3675 5974 5.872617 AGTTTGTCGATCGTGGATTTGATAA 59.127 36.000 15.94 0.00 0.00 1.75
3686 5985 5.798934 GTCATAGTTGTAGTTTGTCGATCGT 59.201 40.000 15.94 0.00 0.00 3.73
3712 6011 1.557371 TGAGGTGATTGGTGCGGATAA 59.443 47.619 0.00 0.00 0.00 1.75
3741 6040 5.421277 TGTTGAAGAACCTCGTTGTCTTTA 58.579 37.500 0.00 0.00 0.00 1.85
3777 6076 1.630244 CTTGAACGCTGCTCCCTTCG 61.630 60.000 0.00 0.00 0.00 3.79
3801 6100 1.125093 TGGTTGGATCTGGTGACGGT 61.125 55.000 0.00 0.00 38.16 4.83
3826 6133 2.224793 GGTGAAAACCTAGAACCTGCCT 60.225 50.000 0.00 0.00 0.00 4.75
3828 6135 2.160205 GGGTGAAAACCTAGAACCTGC 58.840 52.381 0.00 0.00 0.00 4.85
3853 6160 3.804036 TCGGATATGCTCGAATTGGTTT 58.196 40.909 0.00 0.00 32.11 3.27
3859 6166 2.820059 TTGCTCGGATATGCTCGAAT 57.180 45.000 0.00 0.00 34.87 3.34
3892 6199 4.185467 TGGCGATGTTTTGCATTGTTAT 57.815 36.364 0.00 0.00 40.37 1.89
3897 6204 1.733360 GCAATGGCGATGTTTTGCATT 59.267 42.857 0.55 0.00 43.00 3.56
3932 6245 4.450080 GGTGAAAACCTACGTTTGACCTAG 59.550 45.833 0.00 0.00 41.42 3.02
4001 6317 2.437180 CAAGCTGCTGGGATCGCA 60.437 61.111 12.41 12.41 35.80 5.10
4017 6333 0.323087 TAGTCGAGTAGCCCAGTGCA 60.323 55.000 0.00 0.00 44.83 4.57
4018 6334 0.100861 GTAGTCGAGTAGCCCAGTGC 59.899 60.000 0.00 0.00 41.71 4.40
4019 6335 0.739561 GGTAGTCGAGTAGCCCAGTG 59.260 60.000 16.92 0.00 0.00 3.66
4020 6336 0.330604 TGGTAGTCGAGTAGCCCAGT 59.669 55.000 23.04 0.00 0.00 4.00
4021 6337 0.739561 GTGGTAGTCGAGTAGCCCAG 59.260 60.000 23.04 0.00 0.00 4.45
4022 6338 0.682209 GGTGGTAGTCGAGTAGCCCA 60.682 60.000 23.04 14.58 0.00 5.36
4023 6339 1.722636 CGGTGGTAGTCGAGTAGCCC 61.723 65.000 23.04 20.83 0.00 5.19
4024 6340 1.726265 CGGTGGTAGTCGAGTAGCC 59.274 63.158 23.04 16.22 0.00 3.93
4025 6341 1.063811 GCGGTGGTAGTCGAGTAGC 59.936 63.158 20.11 20.11 0.00 3.58
4026 6342 0.377554 CAGCGGTGGTAGTCGAGTAG 59.622 60.000 6.74 0.00 0.00 2.57
4027 6343 2.474561 CAGCGGTGGTAGTCGAGTA 58.525 57.895 6.74 0.00 0.00 2.59
4028 6344 3.275088 CAGCGGTGGTAGTCGAGT 58.725 61.111 6.74 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.