Multiple sequence alignment - TraesCS4D01G131500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G131500 chr4D 100.000 3604 0 0 1 3604 118375679 118372076 0.000000e+00 6656.0
1 TraesCS4D01G131500 chr4D 90.756 595 44 3 1972 2558 114197694 114198285 0.000000e+00 784.0
2 TraesCS4D01G131500 chr4D 89.565 230 12 7 2545 2772 114211610 114211829 7.620000e-72 281.0
3 TraesCS4D01G131500 chr4D 100.000 52 0 0 3553 3604 118339675 118339624 2.960000e-16 97.1
4 TraesCS4D01G131500 chr4A 93.157 1476 66 13 1340 2796 455272504 455273963 0.000000e+00 2134.0
5 TraesCS4D01G131500 chr4A 95.371 1253 46 7 1 1243 455271251 455272501 0.000000e+00 1982.0
6 TraesCS4D01G131500 chr4B 91.588 1165 45 16 1364 2504 180561260 180560125 0.000000e+00 1559.0
7 TraesCS4D01G131500 chr4B 91.439 841 36 19 404 1218 180562092 180561262 0.000000e+00 1122.0
8 TraesCS4D01G131500 chr4B 90.681 279 10 8 1 279 180562892 180562630 1.230000e-94 357.0
9 TraesCS4D01G131500 chr4B 94.969 159 4 2 2637 2795 180558824 180558670 2.780000e-61 246.0
10 TraesCS4D01G131500 chr4B 96.599 147 5 0 2496 2642 180560000 180559854 1.000000e-60 244.0
11 TraesCS4D01G131500 chr5B 96.667 750 23 2 2803 3552 644505870 644505123 0.000000e+00 1245.0
12 TraesCS4D01G131500 chr5B 80.769 234 21 16 1040 1251 280987545 280987776 1.040000e-35 161.0
13 TraesCS4D01G131500 chr5B 95.062 81 4 0 1386 1466 280987834 280987914 1.050000e-25 128.0
14 TraesCS4D01G131500 chr5B 82.979 94 11 5 1244 1337 449753556 449753644 2.980000e-11 80.5
15 TraesCS4D01G131500 chr3B 96.400 750 25 2 2803 3552 582413906 582413159 0.000000e+00 1234.0
16 TraesCS4D01G131500 chr3B 96.000 750 28 2 2803 3552 449312297 449311550 0.000000e+00 1218.0
17 TraesCS4D01G131500 chr1B 96.267 750 26 2 2803 3552 661919730 661918983 0.000000e+00 1229.0
18 TraesCS4D01G131500 chr1B 96.000 750 28 2 2803 3552 306976991 306977738 0.000000e+00 1218.0
19 TraesCS4D01G131500 chr1B 95.733 750 30 2 2803 3552 119486248 119485501 0.000000e+00 1206.0
20 TraesCS4D01G131500 chr1B 83.158 95 12 4 1242 1336 550460385 550460475 2.310000e-12 84.2
21 TraesCS4D01G131500 chr7B 96.000 750 28 2 2803 3552 703145194 703144447 0.000000e+00 1218.0
22 TraesCS4D01G131500 chr6B 96.000 750 27 3 2803 3552 11732146 11731400 0.000000e+00 1216.0
23 TraesCS4D01G131500 chr7D 95.872 751 28 3 2803 3552 589396295 589395547 0.000000e+00 1212.0
24 TraesCS4D01G131500 chr7D 100.000 28 0 0 3577 3604 252560801 252560828 7.000000e-03 52.8
25 TraesCS4D01G131500 chr5A 89.600 125 12 1 1103 1226 330199414 330199538 1.340000e-34 158.0
26 TraesCS4D01G131500 chr5A 95.062 81 4 0 1386 1466 330199621 330199701 1.050000e-25 128.0
27 TraesCS4D01G131500 chr5A 96.875 32 1 0 1040 1071 330199333 330199364 2.000000e-03 54.7
28 TraesCS4D01G131500 chr5D 88.281 128 14 1 1103 1229 246303362 246303489 6.230000e-33 152.0
29 TraesCS4D01G131500 chr5D 95.062 81 4 0 1386 1466 246303545 246303625 1.050000e-25 128.0
30 TraesCS4D01G131500 chr5D 83.000 100 13 4 1239 1338 378049211 378049116 1.780000e-13 87.9
31 TraesCS4D01G131500 chr5D 100.000 29 0 0 1043 1071 246303284 246303312 2.000000e-03 54.7
32 TraesCS4D01G131500 chr1D 96.667 60 1 1 1246 1305 298576993 298577051 8.240000e-17 99.0
33 TraesCS4D01G131500 chr1D 85.556 90 9 4 1246 1335 279243271 279243186 1.380000e-14 91.6
34 TraesCS4D01G131500 chr1D 80.734 109 9 10 1246 1350 266767345 266767245 1.390000e-09 75.0
35 TraesCS4D01G131500 chr2D 84.211 95 12 3 1244 1338 6116900 6116809 4.960000e-14 89.8
36 TraesCS4D01G131500 chr6D 83.696 92 10 5 1246 1337 434443373 434443287 8.290000e-12 82.4
37 TraesCS4D01G131500 chr2B 80.374 107 13 8 1246 1350 513171717 513171817 1.390000e-09 75.0
38 TraesCS4D01G131500 chr6A 92.308 52 1 1 3553 3604 3484474 3484522 1.800000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G131500 chr4D 118372076 118375679 3603 True 6656.0 6656 100.0000 1 3604 1 chr4D.!!$R2 3603
1 TraesCS4D01G131500 chr4D 114197694 114198285 591 False 784.0 784 90.7560 1972 2558 1 chr4D.!!$F1 586
2 TraesCS4D01G131500 chr4A 455271251 455273963 2712 False 2058.0 2134 94.2640 1 2796 2 chr4A.!!$F1 2795
3 TraesCS4D01G131500 chr4B 180558670 180562892 4222 True 705.6 1559 93.0552 1 2795 5 chr4B.!!$R1 2794
4 TraesCS4D01G131500 chr5B 644505123 644505870 747 True 1245.0 1245 96.6670 2803 3552 1 chr5B.!!$R1 749
5 TraesCS4D01G131500 chr3B 582413159 582413906 747 True 1234.0 1234 96.4000 2803 3552 1 chr3B.!!$R2 749
6 TraesCS4D01G131500 chr3B 449311550 449312297 747 True 1218.0 1218 96.0000 2803 3552 1 chr3B.!!$R1 749
7 TraesCS4D01G131500 chr1B 661918983 661919730 747 True 1229.0 1229 96.2670 2803 3552 1 chr1B.!!$R2 749
8 TraesCS4D01G131500 chr1B 306976991 306977738 747 False 1218.0 1218 96.0000 2803 3552 1 chr1B.!!$F1 749
9 TraesCS4D01G131500 chr1B 119485501 119486248 747 True 1206.0 1206 95.7330 2803 3552 1 chr1B.!!$R1 749
10 TraesCS4D01G131500 chr7B 703144447 703145194 747 True 1218.0 1218 96.0000 2803 3552 1 chr7B.!!$R1 749
11 TraesCS4D01G131500 chr6B 11731400 11732146 746 True 1216.0 1216 96.0000 2803 3552 1 chr6B.!!$R1 749
12 TraesCS4D01G131500 chr7D 589395547 589396295 748 True 1212.0 1212 95.8720 2803 3552 1 chr7D.!!$R1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 1412 0.249197 TCAAGCGCCTCGATCATCAG 60.249 55.0 2.29 0.0 0.00 2.90 F
1634 2084 0.180406 GCCAGGGTATGTCCACGAAT 59.820 55.0 0.00 0.0 38.11 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2583 0.388659 GCCTCGTCATGATGAGCTCT 59.611 55.0 31.49 0.0 41.84 4.09 R
3556 5222 0.178068 ACCACCGCATGTATCCTGTC 59.822 55.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 203 3.893326 TGATGTCTACCCTGTGATGTG 57.107 47.619 0.00 0.00 0.00 3.21
337 675 6.947258 GCTTTTGCACAAACATAATCAAACT 58.053 32.000 0.00 0.00 46.58 2.66
363 701 0.457853 TGTGATGTACCGCGCTTCTC 60.458 55.000 5.56 0.00 0.00 2.87
402 777 8.906636 ATTGTACACTAGTGTATTACGTGAAG 57.093 34.615 32.53 2.94 46.36 3.02
482 898 7.444487 CCTAGCTGGACTTTTTAGTTAGTGTTT 59.556 37.037 0.00 0.00 38.35 2.83
648 1065 6.536941 CACTTAATTGTCCTTCTCTCCTTAGC 59.463 42.308 0.00 0.00 0.00 3.09
667 1084 8.446394 TCCTTAGCTATACAGGACTAGTACATT 58.554 37.037 8.10 0.00 31.33 2.71
692 1109 9.754382 TTGTACTGTAAAGTGTAAAGGTTAGAG 57.246 33.333 0.00 0.00 0.00 2.43
696 1113 9.978044 ACTGTAAAGTGTAAAGGTTAGAGTTAG 57.022 33.333 0.00 0.00 28.71 2.34
700 1117 8.585189 AAAGTGTAAAGGTTAGAGTTAGTTCG 57.415 34.615 0.00 0.00 0.00 3.95
718 1135 1.275291 TCGATCTTTCACCACCTCACC 59.725 52.381 0.00 0.00 0.00 4.02
744 1161 5.796424 AATTTGGATCTCCCATGCATTAC 57.204 39.130 0.00 0.00 46.10 1.89
760 1178 5.321102 TGCATTACTAGCTTCCTTCCAAAA 58.679 37.500 0.00 0.00 0.00 2.44
928 1371 1.726248 TGAGATCGATGCAACACAACG 59.274 47.619 0.54 0.00 45.14 4.10
969 1412 0.249197 TCAAGCGCCTCGATCATCAG 60.249 55.000 2.29 0.00 0.00 2.90
972 1415 1.663074 GCGCCTCGATCATCAGGTC 60.663 63.158 0.00 0.00 31.65 3.85
993 1436 3.941081 AGCGAGATCACCATCGGT 58.059 55.556 1.42 1.42 44.09 4.69
1023 1466 1.080298 GACAAGCAGCATGGGCAAC 60.080 57.895 2.09 0.00 44.61 4.17
1026 1469 1.679977 AAGCAGCATGGGCAACGAT 60.680 52.632 0.00 0.00 44.61 3.73
1032 1475 3.415186 ATGGGCAACGATGGGAGT 58.585 55.556 0.00 0.00 31.71 3.85
1226 1675 3.370527 GGCCAAGATTGTAAGCCTACTCA 60.371 47.826 0.00 0.00 40.57 3.41
1227 1676 4.455606 GCCAAGATTGTAAGCCTACTCAT 58.544 43.478 0.00 0.00 0.00 2.90
1236 1686 5.007682 TGTAAGCCTACTCATTTTTCCACC 58.992 41.667 0.00 0.00 0.00 4.61
1243 1693 6.423182 CCTACTCATTTTTCCACCATCCTAA 58.577 40.000 0.00 0.00 0.00 2.69
1244 1694 7.062957 CCTACTCATTTTTCCACCATCCTAAT 58.937 38.462 0.00 0.00 0.00 1.73
1245 1695 7.561356 CCTACTCATTTTTCCACCATCCTAATT 59.439 37.037 0.00 0.00 0.00 1.40
1246 1696 9.627123 CTACTCATTTTTCCACCATCCTAATTA 57.373 33.333 0.00 0.00 0.00 1.40
1247 1697 8.293699 ACTCATTTTTCCACCATCCTAATTAC 57.706 34.615 0.00 0.00 0.00 1.89
1248 1698 8.116026 ACTCATTTTTCCACCATCCTAATTACT 58.884 33.333 0.00 0.00 0.00 2.24
1249 1699 8.519799 TCATTTTTCCACCATCCTAATTACTC 57.480 34.615 0.00 0.00 0.00 2.59
1250 1700 7.559897 TCATTTTTCCACCATCCTAATTACTCC 59.440 37.037 0.00 0.00 0.00 3.85
1251 1701 5.382664 TTTCCACCATCCTAATTACTCCC 57.617 43.478 0.00 0.00 0.00 4.30
1252 1702 4.295905 TCCACCATCCTAATTACTCCCT 57.704 45.455 0.00 0.00 0.00 4.20
1253 1703 4.232091 TCCACCATCCTAATTACTCCCTC 58.768 47.826 0.00 0.00 0.00 4.30
1254 1704 3.328050 CCACCATCCTAATTACTCCCTCC 59.672 52.174 0.00 0.00 0.00 4.30
1255 1705 3.006967 CACCATCCTAATTACTCCCTCCG 59.993 52.174 0.00 0.00 0.00 4.63
1256 1706 3.240302 CCATCCTAATTACTCCCTCCGT 58.760 50.000 0.00 0.00 0.00 4.69
1257 1707 3.258622 CCATCCTAATTACTCCCTCCGTC 59.741 52.174 0.00 0.00 0.00 4.79
1258 1708 2.954792 TCCTAATTACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
1259 1709 1.969208 CCTAATTACTCCCTCCGTCCC 59.031 57.143 0.00 0.00 0.00 4.46
1260 1710 2.674420 CTAATTACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
1261 1711 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
1262 1712 3.339713 AATTACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
1263 1713 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
1264 1714 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
1265 1715 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
1266 1716 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1267 1717 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1268 1718 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1269 1719 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1270 1720 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1271 1721 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1272 1722 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1273 1723 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1274 1724 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1275 1725 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
1276 1726 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1277 1727 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1278 1728 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1279 1729 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
1280 1730 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
1281 1731 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
1282 1732 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
1283 1733 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
1288 1738 4.547406 AAGAACGTTTTTGACACTAGCC 57.453 40.909 0.46 0.00 0.00 3.93
1289 1739 2.542595 AGAACGTTTTTGACACTAGCCG 59.457 45.455 0.46 0.00 0.00 5.52
1290 1740 1.944032 ACGTTTTTGACACTAGCCGT 58.056 45.000 0.00 0.00 0.00 5.68
1291 1741 1.862827 ACGTTTTTGACACTAGCCGTC 59.137 47.619 6.05 6.05 0.00 4.79
1292 1742 1.193874 CGTTTTTGACACTAGCCGTCC 59.806 52.381 9.71 0.00 32.15 4.79
1293 1743 1.534163 GTTTTTGACACTAGCCGTCCC 59.466 52.381 9.71 0.00 32.15 4.46
1294 1744 0.759959 TTTTGACACTAGCCGTCCCA 59.240 50.000 9.71 0.00 32.15 4.37
1295 1745 0.981183 TTTGACACTAGCCGTCCCAT 59.019 50.000 9.71 0.00 32.15 4.00
1296 1746 1.855295 TTGACACTAGCCGTCCCATA 58.145 50.000 9.71 0.00 32.15 2.74
1297 1747 1.855295 TGACACTAGCCGTCCCATAA 58.145 50.000 9.71 0.00 32.15 1.90
1298 1748 2.394632 TGACACTAGCCGTCCCATAAT 58.605 47.619 9.71 0.00 32.15 1.28
1299 1749 3.568443 TGACACTAGCCGTCCCATAATA 58.432 45.455 9.71 0.00 32.15 0.98
1300 1750 4.157246 TGACACTAGCCGTCCCATAATAT 58.843 43.478 9.71 0.00 32.15 1.28
1301 1751 5.326900 TGACACTAGCCGTCCCATAATATA 58.673 41.667 9.71 0.00 32.15 0.86
1302 1752 5.776208 TGACACTAGCCGTCCCATAATATAA 59.224 40.000 9.71 0.00 32.15 0.98
1303 1753 6.071560 TGACACTAGCCGTCCCATAATATAAG 60.072 42.308 9.71 0.00 32.15 1.73
1304 1754 6.014647 ACACTAGCCGTCCCATAATATAAGA 58.985 40.000 0.00 0.00 0.00 2.10
1305 1755 6.668283 ACACTAGCCGTCCCATAATATAAGAT 59.332 38.462 0.00 0.00 0.00 2.40
1306 1756 7.180408 ACACTAGCCGTCCCATAATATAAGATT 59.820 37.037 0.00 0.00 0.00 2.40
1307 1757 8.041323 CACTAGCCGTCCCATAATATAAGATTT 58.959 37.037 0.00 0.00 0.00 2.17
1308 1758 8.603304 ACTAGCCGTCCCATAATATAAGATTTT 58.397 33.333 0.00 0.00 0.00 1.82
1309 1759 9.449719 CTAGCCGTCCCATAATATAAGATTTTT 57.550 33.333 0.00 0.00 0.00 1.94
1608 2058 4.997395 TGTACAGAAGCAAGAAGATTGACC 59.003 41.667 0.00 0.00 0.00 4.02
1634 2084 0.180406 GCCAGGGTATGTCCACGAAT 59.820 55.000 0.00 0.00 38.11 3.34
1637 2087 2.201732 CAGGGTATGTCCACGAATTCG 58.798 52.381 25.64 25.64 46.33 3.34
1700 2150 5.369404 TCAGTATATTTTGCCCCTGATCTGA 59.631 40.000 0.38 0.00 0.00 3.27
1817 2269 2.223829 CCGGTACAATGCTCTCTAGGTG 60.224 54.545 0.00 0.00 0.00 4.00
1847 2305 7.630082 TCTACTAAATTGCCCTCTACACATTT 58.370 34.615 0.00 0.00 0.00 2.32
1848 2306 8.107095 TCTACTAAATTGCCCTCTACACATTTT 58.893 33.333 0.00 0.00 0.00 1.82
1849 2307 6.924111 ACTAAATTGCCCTCTACACATTTTG 58.076 36.000 0.00 0.00 0.00 2.44
1852 2312 4.582701 TTGCCCTCTACACATTTTGTTG 57.417 40.909 0.00 0.00 39.91 3.33
1862 2322 7.539436 TCTACACATTTTGTTGTTGTTAAGCA 58.461 30.769 0.00 0.00 39.91 3.91
1865 2325 8.038492 ACACATTTTGTTGTTGTTAAGCAATT 57.962 26.923 0.00 0.00 35.50 2.32
1924 2388 3.975982 TCCCTCATCCTCTGCATTATGAA 59.024 43.478 0.00 0.00 0.00 2.57
1951 2415 9.821662 ATAAAACGACTAGCAAAGTTATTCAAC 57.178 29.630 0.00 0.00 39.07 3.18
2109 2583 5.894298 ACCCTACTATTCATCATCAGCAA 57.106 39.130 0.00 0.00 0.00 3.91
2110 2584 5.862845 ACCCTACTATTCATCATCAGCAAG 58.137 41.667 0.00 0.00 0.00 4.01
2131 2605 0.599728 GCTCATCATGACGAGGCTCC 60.600 60.000 19.63 0.00 0.00 4.70
2192 2666 5.188434 CCAGCTTTGATAGTCCAAGAATCA 58.812 41.667 0.00 0.00 0.00 2.57
2250 2724 1.274167 ACAACTATGAAAGACGGCCGA 59.726 47.619 35.90 8.69 0.00 5.54
2263 2749 2.711924 GCCGATGCAAGCTGCTAC 59.288 61.111 0.90 0.00 45.31 3.58
2264 2750 2.108514 GCCGATGCAAGCTGCTACA 61.109 57.895 0.90 5.04 45.31 2.74
2265 2751 1.647545 GCCGATGCAAGCTGCTACAA 61.648 55.000 0.90 0.00 45.31 2.41
2266 2752 1.019673 CCGATGCAAGCTGCTACAAT 58.980 50.000 0.90 0.00 45.31 2.71
2267 2753 1.268386 CCGATGCAAGCTGCTACAATG 60.268 52.381 0.90 0.00 45.31 2.82
2268 2754 1.268386 CGATGCAAGCTGCTACAATGG 60.268 52.381 0.90 0.00 45.31 3.16
2269 2755 1.747355 GATGCAAGCTGCTACAATGGT 59.253 47.619 0.90 0.00 45.31 3.55
2270 2756 0.883153 TGCAAGCTGCTACAATGGTG 59.117 50.000 0.90 0.00 45.31 4.17
2271 2757 0.171903 GCAAGCTGCTACAATGGTGG 59.828 55.000 0.90 0.00 40.96 4.61
2272 2758 1.825090 CAAGCTGCTACAATGGTGGA 58.175 50.000 0.90 0.00 0.00 4.02
2273 2759 1.470098 CAAGCTGCTACAATGGTGGAC 59.530 52.381 0.90 0.00 0.00 4.02
2274 2760 0.692476 AGCTGCTACAATGGTGGACA 59.308 50.000 0.00 0.00 0.00 4.02
2277 2763 2.503331 CTGCTACAATGGTGGACAACA 58.497 47.619 0.00 0.00 0.00 3.33
2304 2790 7.945134 TGATCATATCCATGGTCGTGATATAG 58.055 38.462 20.50 9.35 44.09 1.31
2617 3243 4.212636 CAGCATATGATCGATCAGTTGCAA 59.787 41.667 38.93 22.24 44.46 4.08
2619 3245 6.091713 CAGCATATGATCGATCAGTTGCAATA 59.908 38.462 38.93 25.69 44.46 1.90
2764 4425 4.759782 CCCTCGGCCTCAGTAATTATATG 58.240 47.826 0.00 0.00 0.00 1.78
2796 4461 1.147191 GAAAAGGAGGTTGAACCCCCT 59.853 52.381 12.14 12.14 39.75 4.79
2797 4462 0.482887 AAAGGAGGTTGAACCCCCTG 59.517 55.000 18.77 0.00 39.75 4.45
2798 4463 0.402861 AAGGAGGTTGAACCCCCTGA 60.403 55.000 18.77 0.00 39.75 3.86
2799 4464 0.402861 AGGAGGTTGAACCCCCTGAA 60.403 55.000 17.34 0.00 39.75 3.02
2800 4465 0.481128 GGAGGTTGAACCCCCTGAAA 59.519 55.000 11.41 0.00 39.75 2.69
2801 4466 1.547901 GGAGGTTGAACCCCCTGAAAG 60.548 57.143 11.41 0.00 39.75 2.62
2802 4467 1.423921 GAGGTTGAACCCCCTGAAAGA 59.576 52.381 11.41 0.00 39.75 2.52
2803 4468 1.856920 AGGTTGAACCCCCTGAAAGAA 59.143 47.619 11.41 0.00 39.75 2.52
2804 4469 2.246327 AGGTTGAACCCCCTGAAAGAAA 59.754 45.455 11.41 0.00 39.75 2.52
2805 4470 3.035363 GGTTGAACCCCCTGAAAGAAAA 58.965 45.455 2.08 0.00 29.10 2.29
2806 4471 3.069586 GGTTGAACCCCCTGAAAGAAAAG 59.930 47.826 2.08 0.00 29.10 2.27
2807 4472 2.957474 TGAACCCCCTGAAAGAAAAGG 58.043 47.619 0.00 0.00 34.07 3.11
2808 4473 2.516277 TGAACCCCCTGAAAGAAAAGGA 59.484 45.455 0.00 0.00 35.40 3.36
2809 4474 2.980246 ACCCCCTGAAAGAAAAGGAG 57.020 50.000 0.00 0.00 35.40 3.69
2833 4498 3.443045 CATGACACAAGCCGGGGC 61.443 66.667 2.18 0.18 42.33 5.80
2923 4588 6.448053 TTCTTATTGCGAGCGATGTTATAC 57.552 37.500 8.01 0.00 0.00 1.47
2928 4593 2.159156 TGCGAGCGATGTTATACAAGGT 60.159 45.455 0.00 0.00 0.00 3.50
3088 4753 1.102154 CGCCAGGTTTCCAATATGCA 58.898 50.000 0.00 0.00 0.00 3.96
3391 5057 5.762179 AGAGAACCATATTTGTGAGGACA 57.238 39.130 0.00 0.00 0.00 4.02
3503 5169 3.853330 CCGCAATGGTGAGACGCG 61.853 66.667 3.53 3.53 45.25 6.01
3515 5181 1.478916 TGAGACGCGGATAATGAACCA 59.521 47.619 12.47 0.00 0.00 3.67
3552 5218 0.331278 ATCGGGAATTGGCCAAGTGA 59.669 50.000 25.42 15.01 0.00 3.41
3553 5219 0.331278 TCGGGAATTGGCCAAGTGAT 59.669 50.000 25.42 9.45 0.00 3.06
3554 5220 1.562008 TCGGGAATTGGCCAAGTGATA 59.438 47.619 25.42 0.00 0.00 2.15
3555 5221 1.949525 CGGGAATTGGCCAAGTGATAG 59.050 52.381 25.42 9.12 0.00 2.08
3556 5222 2.310538 GGGAATTGGCCAAGTGATAGG 58.689 52.381 25.42 0.00 0.00 2.57
3557 5223 2.091885 GGGAATTGGCCAAGTGATAGGA 60.092 50.000 25.42 0.00 0.00 2.94
3558 5224 2.952310 GGAATTGGCCAAGTGATAGGAC 59.048 50.000 25.42 6.57 0.00 3.85
3559 5225 3.620488 GAATTGGCCAAGTGATAGGACA 58.380 45.455 25.42 0.00 42.42 4.02
3560 5226 2.787473 TTGGCCAAGTGATAGGACAG 57.213 50.000 16.05 0.00 45.36 3.51
3561 5227 0.911769 TGGCCAAGTGATAGGACAGG 59.088 55.000 0.61 0.00 38.22 4.00
3562 5228 1.204146 GGCCAAGTGATAGGACAGGA 58.796 55.000 0.00 0.00 31.39 3.86
3563 5229 1.771255 GGCCAAGTGATAGGACAGGAT 59.229 52.381 0.00 0.00 31.39 3.24
3564 5230 2.972713 GGCCAAGTGATAGGACAGGATA 59.027 50.000 0.00 0.00 31.39 2.59
3565 5231 3.244249 GGCCAAGTGATAGGACAGGATAC 60.244 52.174 0.00 0.00 31.39 2.24
3566 5232 3.388024 GCCAAGTGATAGGACAGGATACA 59.612 47.826 0.00 0.00 41.41 2.29
3567 5233 4.040952 GCCAAGTGATAGGACAGGATACAT 59.959 45.833 0.00 0.00 41.41 2.29
3568 5234 5.545588 CCAAGTGATAGGACAGGATACATG 58.454 45.833 0.00 0.00 41.41 3.21
3569 5235 4.881019 AGTGATAGGACAGGATACATGC 57.119 45.455 0.00 0.00 41.41 4.06
3570 5236 3.256879 AGTGATAGGACAGGATACATGCG 59.743 47.826 0.00 0.00 41.41 4.73
3571 5237 2.562738 TGATAGGACAGGATACATGCGG 59.437 50.000 0.00 0.00 41.41 5.69
3572 5238 2.082140 TAGGACAGGATACATGCGGT 57.918 50.000 0.00 0.00 41.41 5.68
3573 5239 0.465705 AGGACAGGATACATGCGGTG 59.534 55.000 0.00 0.00 41.41 4.94
3574 5240 0.532862 GGACAGGATACATGCGGTGG 60.533 60.000 0.00 0.00 41.41 4.61
3575 5241 0.178068 GACAGGATACATGCGGTGGT 59.822 55.000 0.00 0.00 41.41 4.16
3576 5242 0.618458 ACAGGATACATGCGGTGGTT 59.382 50.000 0.00 0.00 41.41 3.67
3577 5243 1.004277 ACAGGATACATGCGGTGGTTT 59.996 47.619 0.00 0.00 41.41 3.27
3578 5244 1.401552 CAGGATACATGCGGTGGTTTG 59.598 52.381 0.00 0.00 41.41 2.93
3579 5245 1.280710 AGGATACATGCGGTGGTTTGA 59.719 47.619 0.00 0.00 41.41 2.69
3580 5246 1.670811 GGATACATGCGGTGGTTTGAG 59.329 52.381 0.00 0.00 0.00 3.02
3581 5247 1.670811 GATACATGCGGTGGTTTGAGG 59.329 52.381 0.00 0.00 0.00 3.86
3582 5248 0.687920 TACATGCGGTGGTTTGAGGA 59.312 50.000 0.00 0.00 0.00 3.71
3583 5249 0.606401 ACATGCGGTGGTTTGAGGAG 60.606 55.000 0.00 0.00 0.00 3.69
3584 5250 1.002134 ATGCGGTGGTTTGAGGAGG 60.002 57.895 0.00 0.00 0.00 4.30
3585 5251 1.779061 ATGCGGTGGTTTGAGGAGGT 61.779 55.000 0.00 0.00 0.00 3.85
3586 5252 1.228154 GCGGTGGTTTGAGGAGGTT 60.228 57.895 0.00 0.00 0.00 3.50
3587 5253 1.515521 GCGGTGGTTTGAGGAGGTTG 61.516 60.000 0.00 0.00 0.00 3.77
3588 5254 0.179029 CGGTGGTTTGAGGAGGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
3589 5255 1.749286 CGGTGGTTTGAGGAGGTTGTT 60.749 52.381 0.00 0.00 0.00 2.83
3590 5256 1.681264 GGTGGTTTGAGGAGGTTGTTG 59.319 52.381 0.00 0.00 0.00 3.33
3591 5257 2.650322 GTGGTTTGAGGAGGTTGTTGA 58.350 47.619 0.00 0.00 0.00 3.18
3592 5258 3.020984 GTGGTTTGAGGAGGTTGTTGAA 58.979 45.455 0.00 0.00 0.00 2.69
3593 5259 3.066760 GTGGTTTGAGGAGGTTGTTGAAG 59.933 47.826 0.00 0.00 0.00 3.02
3594 5260 3.288092 GGTTTGAGGAGGTTGTTGAAGT 58.712 45.455 0.00 0.00 0.00 3.01
3595 5261 3.315470 GGTTTGAGGAGGTTGTTGAAGTC 59.685 47.826 0.00 0.00 0.00 3.01
3596 5262 4.200092 GTTTGAGGAGGTTGTTGAAGTCT 58.800 43.478 0.00 0.00 0.00 3.24
3597 5263 4.503714 TTGAGGAGGTTGTTGAAGTCTT 57.496 40.909 0.00 0.00 0.00 3.01
3598 5264 3.808728 TGAGGAGGTTGTTGAAGTCTTG 58.191 45.455 0.00 0.00 0.00 3.02
3599 5265 3.454447 TGAGGAGGTTGTTGAAGTCTTGA 59.546 43.478 0.00 0.00 0.00 3.02
3600 5266 3.809905 AGGAGGTTGTTGAAGTCTTGAC 58.190 45.455 0.00 0.00 0.00 3.18
3601 5267 2.879026 GGAGGTTGTTGAAGTCTTGACC 59.121 50.000 0.00 0.00 0.00 4.02
3602 5268 2.879026 GAGGTTGTTGAAGTCTTGACCC 59.121 50.000 0.00 0.00 0.00 4.46
3603 5269 1.954382 GGTTGTTGAAGTCTTGACCCC 59.046 52.381 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.581011 TTCAAGAAAAAGTTGTGCTTCTTTC 57.419 32.000 0.00 0.00 36.28 2.62
250 251 3.899360 CAACATCCATATTGGCATCCCTT 59.101 43.478 0.00 0.00 37.47 3.95
311 649 6.915544 TTGATTATGTTTGTGCAAAAGCAA 57.084 29.167 10.43 0.00 31.33 3.91
337 675 2.158300 CGGTACATCACAAGCGCAA 58.842 52.632 11.47 0.00 0.00 4.85
363 701 1.411612 GTACAATCGGTGGGTCCTAGG 59.588 57.143 0.82 0.82 0.00 3.02
482 898 3.117322 AGAGAGATCTAAGGCCAGCACTA 60.117 47.826 5.01 0.00 0.00 2.74
648 1065 9.339850 ACAGTACAATGTACTAGTCCTGTATAG 57.660 37.037 23.75 10.72 31.83 1.31
667 1084 8.917088 ACTCTAACCTTTACACTTTACAGTACA 58.083 33.333 0.00 0.00 0.00 2.90
692 1109 4.566987 AGGTGGTGAAAGATCGAACTAAC 58.433 43.478 0.00 0.00 0.00 2.34
696 1113 2.737252 GTGAGGTGGTGAAAGATCGAAC 59.263 50.000 0.00 0.00 0.00 3.95
700 1117 3.425162 AAGGTGAGGTGGTGAAAGATC 57.575 47.619 0.00 0.00 0.00 2.75
744 1161 4.335416 TGTGGATTTTGGAAGGAAGCTAG 58.665 43.478 0.00 0.00 0.00 3.42
760 1178 7.344134 AGCTCATGCATACATTATATGTGGAT 58.656 34.615 0.00 0.00 42.22 3.41
928 1371 2.157738 AGCTGATTTGAGGCTGTTGTC 58.842 47.619 0.00 0.00 34.82 3.18
969 1412 1.008309 GGTGATCTCGCTAGCGACC 60.008 63.158 34.66 28.63 44.01 4.79
972 1415 0.727457 CGATGGTGATCTCGCTAGCG 60.727 60.000 30.91 30.91 39.96 4.26
993 1436 2.432444 CTGCTTGTCCCCATCGTTTAA 58.568 47.619 0.00 0.00 0.00 1.52
1013 1456 2.440065 TCCCATCGTTGCCCATGC 60.440 61.111 0.00 0.00 38.26 4.06
1023 1466 2.892425 GCGGCTGAACTCCCATCG 60.892 66.667 0.00 0.00 0.00 3.84
1026 1469 2.032528 CTTGCGGCTGAACTCCCA 59.967 61.111 0.00 0.00 0.00 4.37
1032 1475 1.965930 ATCGTTGCTTGCGGCTGAA 60.966 52.632 0.00 0.00 42.39 3.02
1226 1675 6.839134 GGGAGTAATTAGGATGGTGGAAAAAT 59.161 38.462 0.00 0.00 0.00 1.82
1227 1676 6.011096 AGGGAGTAATTAGGATGGTGGAAAAA 60.011 38.462 0.00 0.00 0.00 1.94
1236 1686 3.258622 GGACGGAGGGAGTAATTAGGATG 59.741 52.174 0.00 0.00 0.00 3.51
1243 1693 3.339713 TTATGGGACGGAGGGAGTAAT 57.660 47.619 0.00 0.00 0.00 1.89
1244 1694 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
1245 1695 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1246 1696 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1247 1697 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1248 1698 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1249 1699 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1250 1700 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1251 1701 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1252 1702 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1253 1703 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
1254 1704 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
1255 1705 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
1256 1706 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
1257 1707 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
1262 1712 8.448615 GGCTAGTGTCAAAAACGTTCTTATATT 58.551 33.333 0.00 0.00 0.00 1.28
1263 1713 7.201496 CGGCTAGTGTCAAAAACGTTCTTATAT 60.201 37.037 0.00 0.00 0.00 0.86
1264 1714 6.089820 CGGCTAGTGTCAAAAACGTTCTTATA 59.910 38.462 0.00 0.00 0.00 0.98
1265 1715 5.107220 CGGCTAGTGTCAAAAACGTTCTTAT 60.107 40.000 0.00 0.00 0.00 1.73
1266 1716 4.209703 CGGCTAGTGTCAAAAACGTTCTTA 59.790 41.667 0.00 0.00 0.00 2.10
1267 1717 3.001939 CGGCTAGTGTCAAAAACGTTCTT 59.998 43.478 0.00 0.00 0.00 2.52
1268 1718 2.542595 CGGCTAGTGTCAAAAACGTTCT 59.457 45.455 0.00 0.00 0.00 3.01
1269 1719 2.286025 ACGGCTAGTGTCAAAAACGTTC 59.714 45.455 0.00 0.00 0.00 3.95
1270 1720 2.282407 ACGGCTAGTGTCAAAAACGTT 58.718 42.857 0.00 0.00 0.00 3.99
1271 1721 1.862827 GACGGCTAGTGTCAAAAACGT 59.137 47.619 11.06 0.00 36.37 3.99
1272 1722 1.193874 GGACGGCTAGTGTCAAAAACG 59.806 52.381 15.96 0.00 38.10 3.60
1273 1723 1.534163 GGGACGGCTAGTGTCAAAAAC 59.466 52.381 15.96 2.33 38.10 2.43
1274 1724 1.141254 TGGGACGGCTAGTGTCAAAAA 59.859 47.619 15.96 0.34 38.10 1.94
1275 1725 0.759959 TGGGACGGCTAGTGTCAAAA 59.240 50.000 15.96 2.25 38.10 2.44
1276 1726 0.981183 ATGGGACGGCTAGTGTCAAA 59.019 50.000 15.96 6.59 38.10 2.69
1277 1727 1.855295 TATGGGACGGCTAGTGTCAA 58.145 50.000 15.96 6.87 38.10 3.18
1278 1728 1.855295 TTATGGGACGGCTAGTGTCA 58.145 50.000 15.96 1.76 38.10 3.58
1279 1729 4.803098 ATATTATGGGACGGCTAGTGTC 57.197 45.455 8.29 8.29 35.60 3.67
1280 1730 6.014647 TCTTATATTATGGGACGGCTAGTGT 58.985 40.000 0.00 0.00 0.00 3.55
1281 1731 6.525578 TCTTATATTATGGGACGGCTAGTG 57.474 41.667 0.00 0.00 0.00 2.74
1282 1732 7.735326 AATCTTATATTATGGGACGGCTAGT 57.265 36.000 0.00 0.00 0.00 2.57
1283 1733 9.449719 AAAAATCTTATATTATGGGACGGCTAG 57.550 33.333 0.00 0.00 0.00 3.42
1338 1788 9.603921 TTGACATGTCAATCGATGCATATATAT 57.396 29.630 32.36 0.00 43.90 0.86
1354 1804 9.814899 AAAAATAAACATCAAGTTGACATGTCA 57.185 25.926 24.56 24.56 41.19 3.58
1362 1812 7.011295 ACCTGCACAAAAATAAACATCAAGTTG 59.989 33.333 0.00 0.00 41.19 3.16
1608 2058 2.311688 GACATACCCTGGCCGGAGTG 62.312 65.000 15.09 8.45 33.16 3.51
1700 2150 5.610398 TGATGACTGCACATAATAATCGGT 58.390 37.500 0.00 0.00 0.00 4.69
1817 2269 5.297569 AGAGGGCAATTTAGTAGATCCAC 57.702 43.478 0.00 0.00 0.00 4.02
1888 2352 8.964351 AGAGGATGAGGGAAATAAATTTATCCT 58.036 33.333 13.96 13.96 40.37 3.24
1903 2367 4.362470 TTCATAATGCAGAGGATGAGGG 57.638 45.455 0.00 0.00 30.37 4.30
1908 2372 8.345565 GTCGTTTTATTTCATAATGCAGAGGAT 58.654 33.333 0.00 0.00 0.00 3.24
1951 2415 8.253810 TCAGTCAGAACTAACAATCTAGGATTG 58.746 37.037 15.87 15.87 33.25 2.67
2109 2583 0.388659 GCCTCGTCATGATGAGCTCT 59.611 55.000 31.49 0.00 41.84 4.09
2110 2584 0.388659 AGCCTCGTCATGATGAGCTC 59.611 55.000 31.49 24.94 41.84 4.09
2192 2666 7.415229 CGTGATGATCATTTCTTGATGAACAT 58.585 34.615 10.14 9.45 46.05 2.71
2263 2749 4.787260 TGATCATTGTTGTCCACCATTG 57.213 40.909 0.00 0.00 0.00 2.82
2264 2750 6.266103 GGATATGATCATTGTTGTCCACCATT 59.734 38.462 14.65 0.00 0.00 3.16
2265 2751 5.771666 GGATATGATCATTGTTGTCCACCAT 59.228 40.000 14.65 0.00 0.00 3.55
2266 2752 5.132502 GGATATGATCATTGTTGTCCACCA 58.867 41.667 14.65 0.00 0.00 4.17
2267 2753 5.132502 TGGATATGATCATTGTTGTCCACC 58.867 41.667 14.65 5.43 30.10 4.61
2268 2754 6.294342 CCATGGATATGATCATTGTTGTCCAC 60.294 42.308 14.65 0.00 37.34 4.02
2269 2755 5.771165 CCATGGATATGATCATTGTTGTCCA 59.229 40.000 14.65 17.92 38.70 4.02
2270 2756 5.771666 ACCATGGATATGATCATTGTTGTCC 59.228 40.000 21.47 13.47 36.36 4.02
2271 2757 6.347969 CGACCATGGATATGATCATTGTTGTC 60.348 42.308 21.47 10.45 36.36 3.18
2272 2758 5.471116 CGACCATGGATATGATCATTGTTGT 59.529 40.000 21.47 2.84 36.36 3.32
2273 2759 5.471116 ACGACCATGGATATGATCATTGTTG 59.529 40.000 21.47 5.35 36.36 3.33
2274 2760 5.471116 CACGACCATGGATATGATCATTGTT 59.529 40.000 21.47 0.00 36.36 2.83
2277 2763 5.488262 TCACGACCATGGATATGATCATT 57.512 39.130 21.47 1.69 36.36 2.57
2304 2790 0.816018 TCGAGCGAGAGATCCAGGTC 60.816 60.000 0.00 0.00 45.36 3.85
2590 3216 5.058149 ACTGATCGATCATATGCTGAGAC 57.942 43.478 27.43 0.00 37.28 3.36
2596 3222 4.737353 TTGCAACTGATCGATCATATGC 57.263 40.909 35.34 35.34 43.12 3.14
2722 4383 1.137282 GCGTTCCCCTGTTTTTGGAAA 59.863 47.619 0.00 0.00 39.72 3.13
2723 4384 0.747852 GCGTTCCCCTGTTTTTGGAA 59.252 50.000 0.00 0.00 35.84 3.53
2796 4461 6.009589 TCATGGCATAACTCCTTTTCTTTCA 58.990 36.000 0.00 0.00 0.00 2.69
2797 4462 6.071952 TGTCATGGCATAACTCCTTTTCTTTC 60.072 38.462 0.00 0.00 0.00 2.62
2798 4463 5.774690 TGTCATGGCATAACTCCTTTTCTTT 59.225 36.000 0.00 0.00 0.00 2.52
2799 4464 5.183904 GTGTCATGGCATAACTCCTTTTCTT 59.816 40.000 1.89 0.00 0.00 2.52
2800 4465 4.702131 GTGTCATGGCATAACTCCTTTTCT 59.298 41.667 1.89 0.00 0.00 2.52
2801 4466 4.458989 TGTGTCATGGCATAACTCCTTTTC 59.541 41.667 1.89 0.00 0.00 2.29
2802 4467 4.406456 TGTGTCATGGCATAACTCCTTTT 58.594 39.130 1.89 0.00 0.00 2.27
2803 4468 4.032960 TGTGTCATGGCATAACTCCTTT 57.967 40.909 1.89 0.00 0.00 3.11
2804 4469 3.719268 TGTGTCATGGCATAACTCCTT 57.281 42.857 1.89 0.00 0.00 3.36
2805 4470 3.614092 CTTGTGTCATGGCATAACTCCT 58.386 45.455 1.89 0.00 0.00 3.69
2806 4471 2.098117 GCTTGTGTCATGGCATAACTCC 59.902 50.000 1.89 0.00 0.00 3.85
2807 4472 2.098117 GGCTTGTGTCATGGCATAACTC 59.902 50.000 1.89 0.00 34.95 3.01
2808 4473 2.094675 GGCTTGTGTCATGGCATAACT 58.905 47.619 1.89 0.00 34.95 2.24
2809 4474 1.202177 CGGCTTGTGTCATGGCATAAC 60.202 52.381 1.89 0.00 34.61 1.89
2833 4498 0.395586 TCAGGCGGGATTTGATTGGG 60.396 55.000 0.00 0.00 0.00 4.12
2907 4572 2.159156 ACCTTGTATAACATCGCTCGCA 60.159 45.455 0.00 0.00 0.00 5.10
2923 4588 6.314896 GTCTCAGAGAACAATATCCAACCTTG 59.685 42.308 0.20 0.00 0.00 3.61
2928 4593 5.627735 GCCAGTCTCAGAGAACAATATCCAA 60.628 44.000 0.20 0.00 0.00 3.53
2991 4656 1.085501 TTTCGCGATAAAGGACGGGC 61.086 55.000 10.88 0.00 41.03 6.13
3088 4753 0.755327 GCCAAAAGGCGGTATCCCAT 60.755 55.000 0.00 0.00 0.00 4.00
3391 5057 3.751698 GTCGGCTGGTTTTGATTAACTCT 59.248 43.478 0.00 0.00 0.00 3.24
3503 5169 6.187727 TCTGGGAATACTGGTTCATTATCC 57.812 41.667 0.00 0.00 0.00 2.59
3515 5181 7.808279 TCCCGATTAAATATCTGGGAATACT 57.192 36.000 12.02 0.00 37.68 2.12
3552 5218 2.300152 CACCGCATGTATCCTGTCCTAT 59.700 50.000 0.00 0.00 0.00 2.57
3553 5219 1.686587 CACCGCATGTATCCTGTCCTA 59.313 52.381 0.00 0.00 0.00 2.94
3554 5220 0.465705 CACCGCATGTATCCTGTCCT 59.534 55.000 0.00 0.00 0.00 3.85
3555 5221 0.532862 CCACCGCATGTATCCTGTCC 60.533 60.000 0.00 0.00 0.00 4.02
3556 5222 0.178068 ACCACCGCATGTATCCTGTC 59.822 55.000 0.00 0.00 0.00 3.51
3557 5223 0.618458 AACCACCGCATGTATCCTGT 59.382 50.000 0.00 0.00 0.00 4.00
3558 5224 1.401552 CAAACCACCGCATGTATCCTG 59.598 52.381 0.00 0.00 0.00 3.86
3559 5225 1.280710 TCAAACCACCGCATGTATCCT 59.719 47.619 0.00 0.00 0.00 3.24
3560 5226 1.670811 CTCAAACCACCGCATGTATCC 59.329 52.381 0.00 0.00 0.00 2.59
3561 5227 1.670811 CCTCAAACCACCGCATGTATC 59.329 52.381 0.00 0.00 0.00 2.24
3562 5228 1.280710 TCCTCAAACCACCGCATGTAT 59.719 47.619 0.00 0.00 0.00 2.29
3563 5229 0.687920 TCCTCAAACCACCGCATGTA 59.312 50.000 0.00 0.00 0.00 2.29
3564 5230 0.606401 CTCCTCAAACCACCGCATGT 60.606 55.000 0.00 0.00 0.00 3.21
3565 5231 1.308069 CCTCCTCAAACCACCGCATG 61.308 60.000 0.00 0.00 0.00 4.06
3566 5232 1.002134 CCTCCTCAAACCACCGCAT 60.002 57.895 0.00 0.00 0.00 4.73
3567 5233 1.990160 AACCTCCTCAAACCACCGCA 61.990 55.000 0.00 0.00 0.00 5.69
3568 5234 1.228154 AACCTCCTCAAACCACCGC 60.228 57.895 0.00 0.00 0.00 5.68
3569 5235 0.179029 ACAACCTCCTCAAACCACCG 60.179 55.000 0.00 0.00 0.00 4.94
3570 5236 1.681264 CAACAACCTCCTCAAACCACC 59.319 52.381 0.00 0.00 0.00 4.61
3571 5237 2.650322 TCAACAACCTCCTCAAACCAC 58.350 47.619 0.00 0.00 0.00 4.16
3572 5238 3.287222 CTTCAACAACCTCCTCAAACCA 58.713 45.455 0.00 0.00 0.00 3.67
3573 5239 3.288092 ACTTCAACAACCTCCTCAAACC 58.712 45.455 0.00 0.00 0.00 3.27
3574 5240 4.200092 AGACTTCAACAACCTCCTCAAAC 58.800 43.478 0.00 0.00 0.00 2.93
3575 5241 4.503714 AGACTTCAACAACCTCCTCAAA 57.496 40.909 0.00 0.00 0.00 2.69
3576 5242 4.080582 TCAAGACTTCAACAACCTCCTCAA 60.081 41.667 0.00 0.00 0.00 3.02
3577 5243 3.454447 TCAAGACTTCAACAACCTCCTCA 59.546 43.478 0.00 0.00 0.00 3.86
3578 5244 3.810386 GTCAAGACTTCAACAACCTCCTC 59.190 47.826 0.00 0.00 0.00 3.71
3579 5245 3.433740 GGTCAAGACTTCAACAACCTCCT 60.434 47.826 0.00 0.00 0.00 3.69
3580 5246 2.879026 GGTCAAGACTTCAACAACCTCC 59.121 50.000 0.00 0.00 0.00 4.30
3581 5247 2.879026 GGGTCAAGACTTCAACAACCTC 59.121 50.000 0.00 0.00 0.00 3.85
3582 5248 2.422945 GGGGTCAAGACTTCAACAACCT 60.423 50.000 0.00 0.00 0.00 3.50
3583 5249 1.954382 GGGGTCAAGACTTCAACAACC 59.046 52.381 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.