Multiple sequence alignment - TraesCS4D01G131400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G131400 chr4D 100.000 4765 0 0 1 4765 118315646 118310882 0.000000e+00 8800
1 TraesCS4D01G131400 chr4D 98.985 197 2 0 184 380 437723150 437723346 2.110000e-93 353
2 TraesCS4D01G131400 chr4D 96.209 211 6 2 184 394 451900761 451900969 1.270000e-90 344
3 TraesCS4D01G131400 chr4D 96.429 196 6 1 4419 4614 46049232 46049038 5.950000e-84 322
4 TraesCS4D01G131400 chr4A 96.559 4069 100 13 377 4418 455279400 455283455 0.000000e+00 6702
5 TraesCS4D01G131400 chr4A 92.248 129 10 0 4615 4743 455283463 455283591 2.930000e-42 183
6 TraesCS4D01G131400 chr4B 96.237 3614 96 13 377 3970 180548337 180544744 0.000000e+00 5884
7 TraesCS4D01G131400 chr4B 89.706 272 19 8 3971 4240 180544663 180544399 5.910000e-89 339
8 TraesCS4D01G131400 chr4B 96.757 185 6 0 4234 4418 180544027 180543843 4.630000e-80 309
9 TraesCS4D01G131400 chr4B 93.077 130 7 2 4614 4743 180543837 180543710 6.300000e-44 189
10 TraesCS4D01G131400 chr5A 95.078 386 11 4 1 378 680599180 680598795 6.820000e-168 601
11 TraesCS4D01G131400 chr5D 92.289 402 7 7 1 378 561928468 561928869 2.510000e-152 549
12 TraesCS4D01G131400 chr5D 98.000 200 4 0 184 383 530625145 530624946 9.810000e-92 348
13 TraesCS4D01G131400 chr5D 96.585 205 6 1 4415 4619 440743533 440743736 5.910000e-89 339
14 TraesCS4D01G131400 chr5D 94.836 213 11 0 4401 4613 133249873 133249661 2.750000e-87 333
15 TraesCS4D01G131400 chr5D 96.923 195 6 0 4419 4613 302882063 302882257 1.280000e-85 327
16 TraesCS4D01G131400 chrUn 91.198 409 7 10 1 380 99641575 99641983 3.270000e-146 529
17 TraesCS4D01G131400 chrUn 92.105 380 18 6 1 380 27556477 27556844 4.220000e-145 525
18 TraesCS4D01G131400 chrUn 99.425 174 1 0 1 174 98209546 98209373 2.770000e-82 316
19 TraesCS4D01G131400 chrUn 99.425 174 1 0 1 174 175491717 175491890 2.770000e-82 316
20 TraesCS4D01G131400 chrUn 99.425 174 1 0 1 174 451919232 451919405 2.770000e-82 316
21 TraesCS4D01G131400 chrUn 99.425 174 1 0 1 174 455622150 455622323 2.770000e-82 316
22 TraesCS4D01G131400 chrUn 93.909 197 9 3 4423 4618 1937191 1936997 1.300000e-75 294
23 TraesCS4D01G131400 chrUn 92.965 199 13 1 4416 4613 376072987 376072789 6.030000e-74 289
24 TraesCS4D01G131400 chrUn 91.626 203 14 2 4416 4617 37078654 37078454 1.310000e-70 278
25 TraesCS4D01G131400 chrUn 91.960 199 15 1 4416 4613 87682096 87681898 1.310000e-70 278
26 TraesCS4D01G131400 chrUn 91.000 200 15 3 4415 4613 260014782 260014979 2.830000e-67 267
27 TraesCS4D01G131400 chrUn 91.000 200 15 3 4415 4613 262118982 262119179 2.830000e-67 267
28 TraesCS4D01G131400 chrUn 90.547 201 15 3 4416 4613 391468915 391468716 3.660000e-66 263
29 TraesCS4D01G131400 chrUn 94.118 170 9 1 4444 4613 326852263 326852431 1.700000e-64 257
30 TraesCS4D01G131400 chrUn 90.050 201 16 3 4416 4613 375799854 375800053 1.700000e-64 257
31 TraesCS4D01G131400 chrUn 88.626 211 20 4 4416 4625 330165678 330165471 2.200000e-63 254
32 TraesCS4D01G131400 chrUn 88.626 211 20 4 4416 4625 330168570 330168363 2.200000e-63 254
33 TraesCS4D01G131400 chr7D 91.005 378 11 9 1 378 74073108 74072754 5.540000e-134 488
34 TraesCS4D01G131400 chr7D 96.482 199 6 1 4415 4613 411305743 411305940 1.280000e-85 327
35 TraesCS4D01G131400 chr2D 99.487 195 1 0 4419 4613 248684610 248684804 5.870000e-94 355
36 TraesCS4D01G131400 chr2D 97.449 196 5 0 4419 4614 53667111 53666916 7.640000e-88 335
37 TraesCS4D01G131400 chr2D 98.396 187 1 1 1 185 492717581 492717395 1.280000e-85 327
38 TraesCS4D01G131400 chr1D 99.487 195 1 0 184 378 50039366 50039560 5.870000e-94 355
39 TraesCS4D01G131400 chr1D 97.990 199 4 0 4415 4613 128452191 128451993 3.530000e-91 346
40 TraesCS4D01G131400 chr1D 96.040 202 7 1 4413 4613 319355420 319355621 1.280000e-85 327
41 TraesCS4D01G131400 chr1D 95.855 193 7 1 4421 4613 319355427 319355236 1.290000e-80 311
42 TraesCS4D01G131400 chr6D 98.980 196 2 0 4419 4614 269564563 269564368 7.590000e-93 351
43 TraesCS4D01G131400 chr6D 96.552 203 6 1 4415 4617 60237981 60237780 7.640000e-88 335
44 TraesCS4D01G131400 chr6D 96.923 195 6 0 4419 4613 62247562 62247756 1.280000e-85 327
45 TraesCS4D01G131400 chr6D 95.980 199 8 0 4415 4613 97353717 97353519 1.650000e-84 324
46 TraesCS4D01G131400 chr6D 96.410 195 7 0 4419 4613 81675050 81675244 5.950000e-84 322
47 TraesCS4D01G131400 chr6D 95.477 199 9 0 4415 4613 428148663 428148861 7.700000e-83 318
48 TraesCS4D01G131400 chr6D 93.467 199 12 1 4416 4613 60537549 60537747 1.300000e-75 294
49 TraesCS4D01G131400 chr6D 92.647 204 13 2 4411 4613 114786988 114787190 4.660000e-75 292
50 TraesCS4D01G131400 chr3D 97.537 203 4 1 184 385 556112029 556112231 3.530000e-91 346
51 TraesCS4D01G131400 chr3D 97.487 199 5 0 4415 4613 205017230 205017032 1.640000e-89 340
52 TraesCS4D01G131400 chr1B 97.525 202 4 1 184 385 26599025 26599225 1.270000e-90 344
53 TraesCS4D01G131400 chr2A 97.487 199 3 2 4423 4620 161264043 161263846 5.910000e-89 339
54 TraesCS4D01G131400 chr6B 97.297 185 2 2 1 182 994278 994094 1.290000e-80 311


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G131400 chr4D 118310882 118315646 4764 True 8800.00 8800 100.00000 1 4765 1 chr4D.!!$R2 4764
1 TraesCS4D01G131400 chr4A 455279400 455283591 4191 False 3442.50 6702 94.40350 377 4743 2 chr4A.!!$F1 4366
2 TraesCS4D01G131400 chr4B 180543710 180548337 4627 True 1680.25 5884 93.94425 377 4743 4 chr4B.!!$R1 4366
3 TraesCS4D01G131400 chrUn 330165471 330168570 3099 True 254.00 254 88.62600 4416 4625 2 chrUn.!!$R7 209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.106521 GCACCACCACTTGCCATTTT 59.893 50.0 0.00 0.0 32.21 1.82 F
528 529 0.609681 TTGGGCCGGAATACACAACC 60.610 55.0 5.05 0.0 0.00 3.77 F
1723 1728 1.151760 TCATTCCAGCCTGCCCATAT 58.848 50.0 0.00 0.0 0.00 1.78 F
2832 2837 0.107459 GCCTCCCATCACTCACTTCC 60.107 60.0 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 1711 3.678965 TTAAATATGGGCAGGCTGGAA 57.321 42.857 17.64 0.0 0.00 3.53 R
2192 2197 4.437930 GCATGCATCCAGAAGTAGTCAAAC 60.438 45.833 14.21 0.0 0.00 2.93 R
3296 3309 3.679083 CGGTACTTGAGAACCAGAATCCC 60.679 52.174 0.00 0.0 35.35 3.85 R
4232 4724 0.112606 AGACCAGGACTTCCTCGACA 59.887 55.000 0.00 0.0 46.65 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.809513 ATTAGGACCAGAGGCGGT 57.190 55.556 0.00 0.00 43.91 5.68
18 19 3.939710 ATTAGGACCAGAGGCGGTA 57.060 52.632 0.00 0.00 40.22 4.02
19 20 2.400467 ATTAGGACCAGAGGCGGTAT 57.600 50.000 0.00 0.00 40.22 2.73
20 21 2.170012 TTAGGACCAGAGGCGGTATT 57.830 50.000 0.00 0.00 40.22 1.89
21 22 1.410004 TAGGACCAGAGGCGGTATTG 58.590 55.000 0.00 0.00 40.22 1.90
22 23 0.617820 AGGACCAGAGGCGGTATTGT 60.618 55.000 0.00 0.00 40.22 2.71
23 24 0.462047 GGACCAGAGGCGGTATTGTG 60.462 60.000 0.00 0.00 40.22 3.33
24 25 0.249398 GACCAGAGGCGGTATTGTGT 59.751 55.000 0.00 0.00 40.22 3.72
25 26 0.249398 ACCAGAGGCGGTATTGTGTC 59.751 55.000 0.00 0.00 37.57 3.67
26 27 0.806102 CCAGAGGCGGTATTGTGTCG 60.806 60.000 0.00 0.00 0.00 4.35
30 31 2.693285 GCGGTATTGTGTCGCGAC 59.307 61.111 31.66 31.66 40.06 5.19
31 32 2.795389 GCGGTATTGTGTCGCGACC 61.795 63.158 34.34 25.11 40.06 4.79
32 33 1.444724 CGGTATTGTGTCGCGACCA 60.445 57.895 34.34 27.22 0.00 4.02
33 34 1.680105 CGGTATTGTGTCGCGACCAC 61.680 60.000 34.34 28.95 0.00 4.16
34 35 0.668096 GGTATTGTGTCGCGACCACA 60.668 55.000 34.34 30.85 0.00 4.17
35 36 1.141645 GTATTGTGTCGCGACCACAA 58.858 50.000 35.96 35.96 42.07 3.33
36 37 1.730064 GTATTGTGTCGCGACCACAAT 59.270 47.619 39.43 39.43 46.95 2.71
37 38 0.796312 ATTGTGTCGCGACCACAATC 59.204 50.000 36.57 23.15 43.50 2.67
38 39 1.225376 TTGTGTCGCGACCACAATCC 61.225 55.000 33.29 18.04 34.39 3.01
39 40 2.047655 TGTCGCGACCACAATCCC 60.048 61.111 34.34 8.73 0.00 3.85
40 41 2.047655 GTCGCGACCACAATCCCA 60.048 61.111 28.61 0.00 0.00 4.37
41 42 1.669760 GTCGCGACCACAATCCCAA 60.670 57.895 28.61 0.00 0.00 4.12
42 43 1.669760 TCGCGACCACAATCCCAAC 60.670 57.895 3.71 0.00 0.00 3.77
43 44 2.686816 CGCGACCACAATCCCAACC 61.687 63.158 0.00 0.00 0.00 3.77
44 45 2.340328 GCGACCACAATCCCAACCC 61.340 63.158 0.00 0.00 0.00 4.11
45 46 2.038269 CGACCACAATCCCAACCCG 61.038 63.158 0.00 0.00 0.00 5.28
46 47 1.377229 GACCACAATCCCAACCCGA 59.623 57.895 0.00 0.00 0.00 5.14
47 48 0.958876 GACCACAATCCCAACCCGAC 60.959 60.000 0.00 0.00 0.00 4.79
48 49 1.378762 CCACAATCCCAACCCGACT 59.621 57.895 0.00 0.00 0.00 4.18
49 50 0.676782 CCACAATCCCAACCCGACTC 60.677 60.000 0.00 0.00 0.00 3.36
50 51 1.019278 CACAATCCCAACCCGACTCG 61.019 60.000 0.00 0.00 0.00 4.18
52 53 1.916777 AATCCCAACCCGACTCGGT 60.917 57.895 16.35 1.99 46.80 4.69
54 55 1.486145 ATCCCAACCCGACTCGGTTT 61.486 55.000 16.35 5.53 43.88 3.27
55 56 1.670083 CCCAACCCGACTCGGTTTC 60.670 63.158 16.35 0.00 43.88 2.78
56 57 1.370064 CCAACCCGACTCGGTTTCT 59.630 57.895 16.35 0.00 43.88 2.52
57 58 0.604578 CCAACCCGACTCGGTTTCTA 59.395 55.000 16.35 0.00 43.88 2.10
58 59 1.001181 CCAACCCGACTCGGTTTCTAA 59.999 52.381 16.35 0.00 43.88 2.10
59 60 2.354403 CCAACCCGACTCGGTTTCTAAT 60.354 50.000 16.35 0.00 43.88 1.73
60 61 3.332034 CAACCCGACTCGGTTTCTAATT 58.668 45.455 16.35 0.00 43.88 1.40
61 62 3.242549 ACCCGACTCGGTTTCTAATTC 57.757 47.619 16.35 0.00 46.80 2.17
62 63 2.190981 CCCGACTCGGTTTCTAATTCG 58.809 52.381 16.35 0.00 46.80 3.34
63 64 2.416431 CCCGACTCGGTTTCTAATTCGT 60.416 50.000 16.35 0.00 46.80 3.85
64 65 3.181497 CCCGACTCGGTTTCTAATTCGTA 60.181 47.826 16.35 0.00 46.80 3.43
65 66 4.498682 CCCGACTCGGTTTCTAATTCGTAT 60.499 45.833 16.35 0.00 46.80 3.06
66 67 5.277974 CCCGACTCGGTTTCTAATTCGTATA 60.278 44.000 16.35 0.00 46.80 1.47
67 68 5.622856 CCGACTCGGTTTCTAATTCGTATAC 59.377 44.000 9.51 0.00 42.73 1.47
68 69 6.425504 CGACTCGGTTTCTAATTCGTATACT 58.574 40.000 0.56 0.00 0.00 2.12
69 70 6.909357 CGACTCGGTTTCTAATTCGTATACTT 59.091 38.462 0.56 0.00 0.00 2.24
70 71 8.064222 CGACTCGGTTTCTAATTCGTATACTTA 58.936 37.037 0.56 0.00 0.00 2.24
71 72 9.163903 GACTCGGTTTCTAATTCGTATACTTAC 57.836 37.037 0.56 0.00 0.00 2.34
72 73 8.131731 ACTCGGTTTCTAATTCGTATACTTACC 58.868 37.037 0.56 0.00 0.00 2.85
73 74 7.132213 TCGGTTTCTAATTCGTATACTTACCG 58.868 38.462 0.00 0.00 43.48 4.02
74 75 6.360681 CGGTTTCTAATTCGTATACTTACCGG 59.639 42.308 0.00 0.00 39.76 5.28
75 76 7.425606 GGTTTCTAATTCGTATACTTACCGGA 58.574 38.462 9.46 0.00 0.00 5.14
76 77 7.379797 GGTTTCTAATTCGTATACTTACCGGAC 59.620 40.741 9.46 0.00 0.00 4.79
77 78 7.566760 TTCTAATTCGTATACTTACCGGACA 57.433 36.000 9.46 0.00 0.00 4.02
78 79 7.566760 TCTAATTCGTATACTTACCGGACAA 57.433 36.000 9.46 0.00 0.00 3.18
79 80 7.642669 TCTAATTCGTATACTTACCGGACAAG 58.357 38.462 9.46 13.81 0.00 3.16
80 81 6.455360 AATTCGTATACTTACCGGACAAGA 57.545 37.500 21.95 9.93 0.00 3.02
81 82 5.895636 TTCGTATACTTACCGGACAAGAA 57.104 39.130 21.95 6.94 0.00 2.52
82 83 5.895636 TCGTATACTTACCGGACAAGAAA 57.104 39.130 21.95 12.52 0.00 2.52
83 84 6.455360 TCGTATACTTACCGGACAAGAAAT 57.545 37.500 21.95 16.88 0.00 2.17
84 85 6.498304 TCGTATACTTACCGGACAAGAAATC 58.502 40.000 21.95 11.31 0.00 2.17
85 86 6.095300 TCGTATACTTACCGGACAAGAAATCA 59.905 38.462 21.95 6.74 0.00 2.57
86 87 6.753279 CGTATACTTACCGGACAAGAAATCAA 59.247 38.462 21.95 5.70 0.00 2.57
87 88 7.276218 CGTATACTTACCGGACAAGAAATCAAA 59.724 37.037 21.95 3.90 0.00 2.69
88 89 7.989416 ATACTTACCGGACAAGAAATCAAAA 57.011 32.000 21.95 3.43 0.00 2.44
89 90 6.702716 ACTTACCGGACAAGAAATCAAAAA 57.297 33.333 21.95 0.00 0.00 1.94
90 91 6.500910 ACTTACCGGACAAGAAATCAAAAAC 58.499 36.000 21.95 0.00 0.00 2.43
91 92 6.320418 ACTTACCGGACAAGAAATCAAAAACT 59.680 34.615 21.95 0.00 0.00 2.66
92 93 5.592104 ACCGGACAAGAAATCAAAAACTT 57.408 34.783 9.46 0.00 0.00 2.66
93 94 5.348164 ACCGGACAAGAAATCAAAAACTTG 58.652 37.500 9.46 0.00 43.30 3.16
98 99 6.892310 ACAAGAAATCAAAAACTTGTCTGC 57.108 33.333 0.00 0.00 46.12 4.26
99 100 5.812127 ACAAGAAATCAAAAACTTGTCTGCC 59.188 36.000 0.00 0.00 46.12 4.85
100 101 5.596836 AGAAATCAAAAACTTGTCTGCCA 57.403 34.783 0.00 0.00 0.00 4.92
101 102 5.976458 AGAAATCAAAAACTTGTCTGCCAA 58.024 33.333 0.00 0.00 0.00 4.52
119 120 7.087639 TCTGCCAAGACATAAAAATAAAACGG 58.912 34.615 0.00 0.00 0.00 4.44
120 121 5.635700 TGCCAAGACATAAAAATAAAACGGC 59.364 36.000 0.00 0.00 0.00 5.68
121 122 5.635700 GCCAAGACATAAAAATAAAACGGCA 59.364 36.000 0.00 0.00 33.52 5.69
122 123 6.146347 GCCAAGACATAAAAATAAAACGGCAA 59.854 34.615 0.00 0.00 33.52 4.52
123 124 7.307455 GCCAAGACATAAAAATAAAACGGCAAA 60.307 33.333 0.00 0.00 33.52 3.68
124 125 8.552034 CCAAGACATAAAAATAAAACGGCAAAA 58.448 29.630 0.00 0.00 0.00 2.44
125 126 9.579610 CAAGACATAAAAATAAAACGGCAAAAG 57.420 29.630 0.00 0.00 0.00 2.27
126 127 8.305441 AGACATAAAAATAAAACGGCAAAAGG 57.695 30.769 0.00 0.00 0.00 3.11
127 128 8.145122 AGACATAAAAATAAAACGGCAAAAGGA 58.855 29.630 0.00 0.00 0.00 3.36
128 129 8.664211 ACATAAAAATAAAACGGCAAAAGGAA 57.336 26.923 0.00 0.00 0.00 3.36
129 130 8.769891 ACATAAAAATAAAACGGCAAAAGGAAG 58.230 29.630 0.00 0.00 0.00 3.46
130 131 5.666969 AAAATAAAACGGCAAAAGGAAGC 57.333 34.783 0.00 0.00 0.00 3.86
131 132 4.600692 AATAAAACGGCAAAAGGAAGCT 57.399 36.364 0.00 0.00 0.00 3.74
132 133 2.223537 AAAACGGCAAAAGGAAGCTG 57.776 45.000 0.00 0.00 42.73 4.24
133 134 0.249447 AAACGGCAAAAGGAAGCTGC 60.249 50.000 0.00 0.00 40.76 5.25
134 135 2.126734 CGGCAAAAGGAAGCTGCG 60.127 61.111 0.00 0.00 36.93 5.18
135 136 2.431430 GGCAAAAGGAAGCTGCGC 60.431 61.111 0.00 0.00 36.93 6.09
136 137 2.647297 GCAAAAGGAAGCTGCGCT 59.353 55.556 9.73 0.00 42.56 5.92
137 138 1.443363 GCAAAAGGAAGCTGCGCTC 60.443 57.895 9.73 0.00 38.25 5.03
138 139 1.211190 CAAAAGGAAGCTGCGCTCC 59.789 57.895 9.73 7.21 38.25 4.70
139 140 1.073897 AAAAGGAAGCTGCGCTCCT 59.926 52.632 17.42 17.42 38.25 3.69
140 141 1.239968 AAAAGGAAGCTGCGCTCCTG 61.240 55.000 21.96 1.64 38.25 3.86
141 142 4.774503 AGGAAGCTGCGCTCCTGC 62.775 66.667 20.99 10.56 38.25 4.85
143 144 3.052082 GAAGCTGCGCTCCTGCAA 61.052 61.111 9.73 0.00 45.74 4.08
144 145 3.036783 GAAGCTGCGCTCCTGCAAG 62.037 63.158 9.73 0.00 45.74 4.01
155 156 2.125912 CTGCAAGGAGACGGACCG 60.126 66.667 13.61 13.61 0.00 4.79
156 157 3.649277 CTGCAAGGAGACGGACCGG 62.649 68.421 20.00 0.00 0.00 5.28
157 158 3.379445 GCAAGGAGACGGACCGGA 61.379 66.667 20.00 0.00 0.00 5.14
158 159 2.722201 GCAAGGAGACGGACCGGAT 61.722 63.158 20.00 5.74 0.00 4.18
159 160 1.898154 CAAGGAGACGGACCGGATT 59.102 57.895 20.00 2.46 0.00 3.01
160 161 0.249398 CAAGGAGACGGACCGGATTT 59.751 55.000 20.00 0.00 0.00 2.17
161 162 0.535797 AAGGAGACGGACCGGATTTC 59.464 55.000 20.00 6.47 0.00 2.17
162 163 1.226888 GGAGACGGACCGGATTTCG 60.227 63.158 20.00 8.74 38.88 3.46
171 172 2.203015 CGGATTTCGGCGGACCAT 60.203 61.111 7.21 0.00 34.57 3.55
172 173 1.817941 CGGATTTCGGCGGACCATT 60.818 57.895 7.21 0.00 34.57 3.16
173 174 1.772063 CGGATTTCGGCGGACCATTC 61.772 60.000 7.21 0.00 34.57 2.67
174 175 1.641677 GATTTCGGCGGACCATTCG 59.358 57.895 7.21 0.00 34.57 3.34
182 183 4.162690 GGACCATTCGCCTCGCCT 62.163 66.667 0.00 0.00 0.00 5.52
183 184 2.586357 GACCATTCGCCTCGCCTC 60.586 66.667 0.00 0.00 0.00 4.70
184 185 4.514577 ACCATTCGCCTCGCCTCG 62.515 66.667 0.00 0.00 0.00 4.63
185 186 4.207281 CCATTCGCCTCGCCTCGA 62.207 66.667 0.00 0.00 0.00 4.04
203 204 4.897856 GCGCGTGCGTGTGGTTTT 62.898 61.111 16.27 0.00 42.09 2.43
204 205 2.720750 CGCGTGCGTGTGGTTTTC 60.721 61.111 6.00 0.00 34.35 2.29
205 206 2.353030 GCGTGCGTGTGGTTTTCC 60.353 61.111 0.00 0.00 41.14 3.13
206 207 2.330041 CGTGCGTGTGGTTTTCCC 59.670 61.111 0.00 0.00 39.73 3.97
207 208 2.184167 CGTGCGTGTGGTTTTCCCT 61.184 57.895 0.00 0.00 39.73 4.20
208 209 1.720694 CGTGCGTGTGGTTTTCCCTT 61.721 55.000 0.00 0.00 39.73 3.95
209 210 0.458260 GTGCGTGTGGTTTTCCCTTT 59.542 50.000 0.00 0.00 39.73 3.11
210 211 0.741915 TGCGTGTGGTTTTCCCTTTC 59.258 50.000 0.00 0.00 39.73 2.62
211 212 1.029681 GCGTGTGGTTTTCCCTTTCT 58.970 50.000 0.00 0.00 39.73 2.52
212 213 1.001706 GCGTGTGGTTTTCCCTTTCTC 60.002 52.381 0.00 0.00 39.73 2.87
213 214 2.572290 CGTGTGGTTTTCCCTTTCTCT 58.428 47.619 0.00 0.00 39.73 3.10
214 215 2.949644 CGTGTGGTTTTCCCTTTCTCTT 59.050 45.455 0.00 0.00 39.73 2.85
215 216 3.003378 CGTGTGGTTTTCCCTTTCTCTTC 59.997 47.826 0.00 0.00 39.73 2.87
216 217 4.207955 GTGTGGTTTTCCCTTTCTCTTCT 58.792 43.478 0.00 0.00 39.73 2.85
217 218 4.276183 GTGTGGTTTTCCCTTTCTCTTCTC 59.724 45.833 0.00 0.00 39.73 2.87
218 219 4.080015 TGTGGTTTTCCCTTTCTCTTCTCA 60.080 41.667 0.00 0.00 39.73 3.27
219 220 4.276183 GTGGTTTTCCCTTTCTCTTCTCAC 59.724 45.833 0.00 0.00 39.73 3.51
220 221 4.080015 TGGTTTTCCCTTTCTCTTCTCACA 60.080 41.667 0.00 0.00 39.73 3.58
221 222 4.276183 GGTTTTCCCTTTCTCTTCTCACAC 59.724 45.833 0.00 0.00 0.00 3.82
222 223 4.771114 TTTCCCTTTCTCTTCTCACACA 57.229 40.909 0.00 0.00 0.00 3.72
223 224 3.753294 TCCCTTTCTCTTCTCACACAC 57.247 47.619 0.00 0.00 0.00 3.82
224 225 2.368875 TCCCTTTCTCTTCTCACACACC 59.631 50.000 0.00 0.00 0.00 4.16
225 226 2.104792 CCCTTTCTCTTCTCACACACCA 59.895 50.000 0.00 0.00 0.00 4.17
226 227 3.134458 CCTTTCTCTTCTCACACACCAC 58.866 50.000 0.00 0.00 0.00 4.16
227 228 3.181461 CCTTTCTCTTCTCACACACCACT 60.181 47.826 0.00 0.00 0.00 4.00
228 229 4.446371 CTTTCTCTTCTCACACACCACTT 58.554 43.478 0.00 0.00 0.00 3.16
229 230 5.453339 CCTTTCTCTTCTCACACACCACTTA 60.453 44.000 0.00 0.00 0.00 2.24
230 231 4.855715 TCTCTTCTCACACACCACTTAG 57.144 45.455 0.00 0.00 0.00 2.18
231 232 4.470602 TCTCTTCTCACACACCACTTAGA 58.529 43.478 0.00 0.00 0.00 2.10
232 233 4.520874 TCTCTTCTCACACACCACTTAGAG 59.479 45.833 0.00 0.00 0.00 2.43
233 234 4.215908 TCTTCTCACACACCACTTAGAGT 58.784 43.478 0.00 0.00 0.00 3.24
234 235 4.038042 TCTTCTCACACACCACTTAGAGTG 59.962 45.833 1.14 1.14 45.53 3.51
245 246 4.181309 CACTTAGAGTGGTGGAGAGAAC 57.819 50.000 0.16 0.00 42.35 3.01
246 247 3.056465 CACTTAGAGTGGTGGAGAGAACC 60.056 52.174 0.16 0.00 42.35 3.62
247 248 2.233305 TAGAGTGGTGGAGAGAACCC 57.767 55.000 0.00 0.00 36.83 4.11
248 249 0.191064 AGAGTGGTGGAGAGAACCCA 59.809 55.000 0.00 0.00 36.83 4.51
260 261 7.841282 TGGAGAGAACCCACTATATAAAGAG 57.159 40.000 0.00 0.00 0.00 2.85
261 262 6.782988 TGGAGAGAACCCACTATATAAAGAGG 59.217 42.308 0.00 0.00 0.00 3.69
262 263 6.783482 GGAGAGAACCCACTATATAAAGAGGT 59.217 42.308 0.00 0.00 0.00 3.85
263 264 7.039574 GGAGAGAACCCACTATATAAAGAGGTC 60.040 44.444 0.00 0.00 0.00 3.85
264 265 6.783482 AGAGAACCCACTATATAAAGAGGTCC 59.217 42.308 0.00 0.00 0.00 4.46
265 266 6.449956 AGAACCCACTATATAAAGAGGTCCA 58.550 40.000 0.00 0.00 0.00 4.02
266 267 6.906901 AGAACCCACTATATAAAGAGGTCCAA 59.093 38.462 0.00 0.00 0.00 3.53
267 268 6.496144 ACCCACTATATAAAGAGGTCCAAC 57.504 41.667 0.00 0.00 0.00 3.77
268 269 6.210522 ACCCACTATATAAAGAGGTCCAACT 58.789 40.000 0.00 0.00 0.00 3.16
269 270 6.326843 ACCCACTATATAAAGAGGTCCAACTC 59.673 42.308 0.00 0.00 37.77 3.01
279 280 5.117406 AGAGGTCCAACTCTTTTTCAACT 57.883 39.130 0.00 0.00 45.21 3.16
280 281 5.510430 AGAGGTCCAACTCTTTTTCAACTT 58.490 37.500 0.00 0.00 45.21 2.66
281 282 5.590663 AGAGGTCCAACTCTTTTTCAACTTC 59.409 40.000 0.00 0.00 45.21 3.01
282 283 4.645136 AGGTCCAACTCTTTTTCAACTTCC 59.355 41.667 0.00 0.00 0.00 3.46
283 284 4.401202 GGTCCAACTCTTTTTCAACTTCCA 59.599 41.667 0.00 0.00 0.00 3.53
284 285 5.105513 GGTCCAACTCTTTTTCAACTTCCAA 60.106 40.000 0.00 0.00 0.00 3.53
285 286 6.036470 GTCCAACTCTTTTTCAACTTCCAAG 58.964 40.000 0.00 0.00 0.00 3.61
286 287 5.127031 TCCAACTCTTTTTCAACTTCCAAGG 59.873 40.000 0.00 0.00 0.00 3.61
287 288 5.105351 CCAACTCTTTTTCAACTTCCAAGGT 60.105 40.000 0.00 0.00 0.00 3.50
288 289 5.582689 ACTCTTTTTCAACTTCCAAGGTG 57.417 39.130 0.00 0.00 45.10 4.00
289 290 4.402474 ACTCTTTTTCAACTTCCAAGGTGG 59.598 41.667 4.52 0.00 43.89 4.61
290 291 3.704061 TCTTTTTCAACTTCCAAGGTGGG 59.296 43.478 4.52 0.00 43.89 4.61
291 292 3.390175 TTTTCAACTTCCAAGGTGGGA 57.610 42.857 4.52 0.00 43.89 4.37
292 293 2.358322 TTCAACTTCCAAGGTGGGAC 57.642 50.000 4.52 0.00 43.89 4.46
293 294 1.518367 TCAACTTCCAAGGTGGGACT 58.482 50.000 4.52 0.00 43.89 3.85
294 295 2.696775 TCAACTTCCAAGGTGGGACTA 58.303 47.619 4.52 0.00 43.89 2.59
295 296 3.050089 TCAACTTCCAAGGTGGGACTAA 58.950 45.455 4.52 0.00 43.89 2.24
296 297 3.460340 TCAACTTCCAAGGTGGGACTAAA 59.540 43.478 4.52 0.00 43.89 1.85
297 298 3.503800 ACTTCCAAGGTGGGACTAAAC 57.496 47.619 0.00 0.00 38.32 2.01
298 299 3.053826 ACTTCCAAGGTGGGACTAAACT 58.946 45.455 0.00 0.00 38.32 2.66
299 300 3.462205 ACTTCCAAGGTGGGACTAAACTT 59.538 43.478 0.00 0.00 38.32 2.66
300 301 4.661709 ACTTCCAAGGTGGGACTAAACTTA 59.338 41.667 0.00 0.00 38.32 2.24
301 302 4.903045 TCCAAGGTGGGACTAAACTTAG 57.097 45.455 0.00 0.00 38.32 2.18
302 303 3.008704 TCCAAGGTGGGACTAAACTTAGC 59.991 47.826 0.00 0.00 38.32 3.09
303 304 3.244770 CCAAGGTGGGACTAAACTTAGCA 60.245 47.826 0.00 0.00 32.67 3.49
304 305 3.697619 AGGTGGGACTAAACTTAGCAC 57.302 47.619 0.00 0.00 34.09 4.40
305 306 2.305052 AGGTGGGACTAAACTTAGCACC 59.695 50.000 13.01 13.01 39.59 5.01
306 307 2.039348 GGTGGGACTAAACTTAGCACCA 59.961 50.000 14.78 11.67 39.34 4.17
307 308 3.072211 GTGGGACTAAACTTAGCACCAC 58.928 50.000 19.19 19.19 45.26 4.16
308 309 2.039348 TGGGACTAAACTTAGCACCACC 59.961 50.000 8.06 0.00 35.94 4.61
309 310 2.039348 GGGACTAAACTTAGCACCACCA 59.961 50.000 12.31 0.00 34.44 4.17
310 311 3.072211 GGACTAAACTTAGCACCACCAC 58.928 50.000 0.00 0.00 34.09 4.16
311 312 3.244457 GGACTAAACTTAGCACCACCACT 60.244 47.826 0.00 0.00 34.09 4.00
312 313 4.386711 GACTAAACTTAGCACCACCACTT 58.613 43.478 0.00 0.00 34.09 3.16
313 314 4.134563 ACTAAACTTAGCACCACCACTTG 58.865 43.478 0.00 0.00 34.09 3.16
314 315 1.318576 AACTTAGCACCACCACTTGC 58.681 50.000 0.00 0.00 39.16 4.01
315 316 0.537371 ACTTAGCACCACCACTTGCC 60.537 55.000 0.00 0.00 39.75 4.52
316 317 0.537143 CTTAGCACCACCACTTGCCA 60.537 55.000 0.00 0.00 39.75 4.92
317 318 0.112218 TTAGCACCACCACTTGCCAT 59.888 50.000 0.00 0.00 39.75 4.40
318 319 0.112218 TAGCACCACCACTTGCCATT 59.888 50.000 0.00 0.00 39.75 3.16
319 320 0.760189 AGCACCACCACTTGCCATTT 60.760 50.000 0.00 0.00 39.75 2.32
320 321 0.106521 GCACCACCACTTGCCATTTT 59.893 50.000 0.00 0.00 32.21 1.82
321 322 1.342819 GCACCACCACTTGCCATTTTA 59.657 47.619 0.00 0.00 32.21 1.52
322 323 2.866065 GCACCACCACTTGCCATTTTAC 60.866 50.000 0.00 0.00 32.21 2.01
323 324 2.363680 CACCACCACTTGCCATTTTACA 59.636 45.455 0.00 0.00 0.00 2.41
324 325 2.364002 ACCACCACTTGCCATTTTACAC 59.636 45.455 0.00 0.00 0.00 2.90
325 326 2.363680 CCACCACTTGCCATTTTACACA 59.636 45.455 0.00 0.00 0.00 3.72
326 327 3.006752 CCACCACTTGCCATTTTACACAT 59.993 43.478 0.00 0.00 0.00 3.21
327 328 3.989167 CACCACTTGCCATTTTACACATG 59.011 43.478 0.00 0.00 0.00 3.21
328 329 3.006752 ACCACTTGCCATTTTACACATGG 59.993 43.478 0.00 0.00 43.81 3.66
329 330 3.587923 CACTTGCCATTTTACACATGGG 58.412 45.455 0.00 0.00 41.56 4.00
330 331 2.028203 ACTTGCCATTTTACACATGGGC 60.028 45.455 0.00 0.00 41.56 5.36
331 332 1.935799 TGCCATTTTACACATGGGCT 58.064 45.000 0.00 0.00 41.56 5.19
332 333 2.255406 TGCCATTTTACACATGGGCTT 58.745 42.857 0.00 0.00 41.56 4.35
333 334 2.636893 TGCCATTTTACACATGGGCTTT 59.363 40.909 0.00 0.00 41.56 3.51
334 335 3.002102 GCCATTTTACACATGGGCTTTG 58.998 45.455 0.00 0.00 41.56 2.77
335 336 3.002102 CCATTTTACACATGGGCTTTGC 58.998 45.455 0.00 0.00 38.05 3.68
336 337 2.430546 TTTTACACATGGGCTTTGCG 57.569 45.000 0.00 0.00 0.00 4.85
337 338 1.610363 TTTACACATGGGCTTTGCGA 58.390 45.000 0.00 0.00 0.00 5.10
338 339 1.832883 TTACACATGGGCTTTGCGAT 58.167 45.000 0.00 0.00 0.00 4.58
339 340 1.832883 TACACATGGGCTTTGCGATT 58.167 45.000 0.00 0.00 0.00 3.34
340 341 0.968405 ACACATGGGCTTTGCGATTT 59.032 45.000 0.00 0.00 0.00 2.17
341 342 1.067635 ACACATGGGCTTTGCGATTTC 60.068 47.619 0.00 0.00 0.00 2.17
342 343 1.067706 CACATGGGCTTTGCGATTTCA 60.068 47.619 0.00 0.00 0.00 2.69
343 344 1.203052 ACATGGGCTTTGCGATTTCAG 59.797 47.619 0.00 0.00 0.00 3.02
344 345 1.473677 CATGGGCTTTGCGATTTCAGA 59.526 47.619 0.00 0.00 0.00 3.27
345 346 1.614996 TGGGCTTTGCGATTTCAGAA 58.385 45.000 0.00 0.00 0.00 3.02
346 347 1.959985 TGGGCTTTGCGATTTCAGAAA 59.040 42.857 0.00 0.00 0.00 2.52
347 348 2.562298 TGGGCTTTGCGATTTCAGAAAT 59.438 40.909 8.20 8.20 0.00 2.17
348 349 3.006752 TGGGCTTTGCGATTTCAGAAATT 59.993 39.130 9.84 0.00 0.00 1.82
349 350 3.368843 GGGCTTTGCGATTTCAGAAATTG 59.631 43.478 16.37 16.37 35.72 2.32
357 358 4.293415 CGATTTCAGAAATTGCTATGGGC 58.707 43.478 9.84 0.00 42.22 5.36
358 359 4.625028 GATTTCAGAAATTGCTATGGGCC 58.375 43.478 9.84 0.00 40.92 5.80
359 360 3.386932 TTCAGAAATTGCTATGGGCCT 57.613 42.857 4.53 0.00 40.92 5.19
360 361 4.518278 TTCAGAAATTGCTATGGGCCTA 57.482 40.909 4.53 0.00 40.92 3.93
361 362 4.090761 TCAGAAATTGCTATGGGCCTAG 57.909 45.455 4.53 5.37 40.92 3.02
362 363 2.555757 CAGAAATTGCTATGGGCCTAGC 59.444 50.000 21.10 21.10 43.61 3.42
528 529 0.609681 TTGGGCCGGAATACACAACC 60.610 55.000 5.05 0.00 0.00 3.77
602 603 5.753921 ACAGTTGAGTGTACAAGAAGCTTAC 59.246 40.000 0.00 0.00 0.00 2.34
605 606 4.543692 TGAGTGTACAAGAAGCTTACGAC 58.456 43.478 0.00 0.00 0.00 4.34
891 895 7.560991 TGCCATGACAAAGATGGAATATTAAGT 59.439 33.333 0.00 0.00 42.81 2.24
918 922 4.299796 TGCCAACTTGGAGGGGGC 62.300 66.667 12.37 0.00 40.96 5.80
967 971 2.041755 GTTTTCCTTGGAGGACTCCCAT 59.958 50.000 15.40 0.00 45.78 4.00
970 974 3.747852 TTCCTTGGAGGACTCCCATAAT 58.252 45.455 15.40 0.00 45.78 1.28
974 978 8.502497 TTCCTTGGAGGACTCCCATAATTGTG 62.502 46.154 15.40 0.00 45.78 3.33
982 986 3.770933 ACTCCCATAATTGTGCTGCAAAT 59.229 39.130 2.77 4.12 40.91 2.32
1037 1041 3.476031 AACACAGCACAGGACCCCG 62.476 63.158 0.00 0.00 0.00 5.73
1566 1570 5.130350 TCCTGTTACAAACCTTCTTTGAGG 58.870 41.667 0.00 0.00 42.75 3.86
1723 1728 1.151760 TCATTCCAGCCTGCCCATAT 58.848 50.000 0.00 0.00 0.00 1.78
2192 2197 3.921021 ACAATTTGACTCTAAGAGCGACG 59.079 43.478 2.79 0.00 32.04 5.12
2445 2450 5.804979 CCACATATTTGTCAAATCCCGTTTC 59.195 40.000 14.07 0.00 32.34 2.78
2517 2522 1.125093 AGGTGGTGTTCGGTGATCCA 61.125 55.000 0.00 0.00 0.00 3.41
2586 2591 0.882927 GAGCCCTACACGCAAACACA 60.883 55.000 0.00 0.00 0.00 3.72
2689 2694 5.337578 TTTAGGCACAATTATTTCCCAGC 57.662 39.130 0.00 0.00 0.00 4.85
2737 2742 5.311844 AGGGCTATCTGAAAAGGTAATCC 57.688 43.478 0.00 0.00 0.00 3.01
2832 2837 0.107459 GCCTCCCATCACTCACTTCC 60.107 60.000 0.00 0.00 0.00 3.46
2933 2938 5.806366 CCACGGTAGGTATTAAAAAGTGG 57.194 43.478 0.00 0.00 40.23 4.00
3109 3122 9.853177 AGGAATATCAAGGAAAATTCGATAACT 57.147 29.630 0.00 0.00 30.67 2.24
3296 3309 6.885376 CAGGTACTCCTATATATATAGCCCCG 59.115 46.154 20.27 9.78 43.07 5.73
3305 3318 1.584724 ATATAGCCCCGGGATTCTGG 58.415 55.000 26.32 4.58 39.17 3.86
3516 3530 1.281899 GCTGATCACCTGACTAACGC 58.718 55.000 0.00 0.00 0.00 4.84
3517 3531 1.134965 GCTGATCACCTGACTAACGCT 60.135 52.381 0.00 0.00 0.00 5.07
3518 3532 2.534298 CTGATCACCTGACTAACGCTG 58.466 52.381 0.00 0.00 0.00 5.18
3519 3533 2.164422 CTGATCACCTGACTAACGCTGA 59.836 50.000 0.00 0.00 0.00 4.26
3520 3534 2.560981 TGATCACCTGACTAACGCTGAA 59.439 45.455 0.00 0.00 0.00 3.02
3811 3839 5.839239 GCACATATCTATTGTAAAACGTCGC 59.161 40.000 0.00 0.00 0.00 5.19
3855 3885 2.167487 GTCGCATCCCTTCTCTCTCTTT 59.833 50.000 0.00 0.00 0.00 2.52
3936 3968 3.624410 TCACTGAAATCGATGATGCTTGG 59.376 43.478 0.00 0.00 0.00 3.61
3954 3986 1.272092 TGGCCATTCACTTCCTTCCAG 60.272 52.381 0.00 0.00 0.00 3.86
4043 4155 4.765273 ACCACAAATTCCAAACAAAGGTC 58.235 39.130 0.00 0.00 0.00 3.85
4117 4230 7.936584 AGAAGTAGCAGATAACTAGACACATC 58.063 38.462 0.00 0.00 0.00 3.06
4184 4297 4.098196 GGCGGAAAGACATCTTCTAGTAGT 59.902 45.833 0.00 0.00 34.61 2.73
4185 4298 5.394333 GGCGGAAAGACATCTTCTAGTAGTT 60.394 44.000 0.00 0.00 34.61 2.24
4232 4724 2.992817 TTTCCAGCGGCACCACCAAT 62.993 55.000 1.45 0.00 39.03 3.16
4356 4848 1.826385 CACAGTTGGGGAGAATGGAC 58.174 55.000 0.00 0.00 0.00 4.02
4368 4860 1.424493 GAATGGACGCGAAGGAGCAG 61.424 60.000 15.93 0.00 36.85 4.24
4371 4863 1.516603 GGACGCGAAGGAGCAGTAC 60.517 63.158 15.93 0.00 36.85 2.73
4411 4904 1.683385 GGGCTCCAGTAATGGAAATGC 59.317 52.381 13.78 12.87 37.55 3.56
4418 4911 6.753744 GCTCCAGTAATGGAAATGCTTTTAAG 59.246 38.462 13.78 0.00 37.55 1.85
4419 4912 6.630071 TCCAGTAATGGAAATGCTTTTAAGC 58.370 36.000 10.01 7.51 42.78 3.09
4420 4913 6.350949 TCCAGTAATGGAAATGCTTTTAAGCC 60.351 38.462 10.01 0.00 42.25 4.35
4421 4914 9.199964 TCCAGTAATGGAAATGCTTTTAAGCCC 62.200 40.741 10.01 6.33 42.25 5.19
4431 4924 4.110036 GCTTTTAAGCCCTGTACAATGG 57.890 45.455 3.05 1.58 46.20 3.16
4432 4925 3.119137 GCTTTTAAGCCCTGTACAATGGG 60.119 47.826 14.57 14.57 46.20 4.00
4448 4941 2.073101 GGGAGGTGCTTAGGGGAGG 61.073 68.421 0.00 0.00 0.00 4.30
4455 4948 1.134371 GTGCTTAGGGGAGGTGCTTAG 60.134 57.143 0.00 0.00 0.00 2.18
4469 4962 6.374417 AGGTGCTTAGAGAAATAAACCAGA 57.626 37.500 0.00 0.00 0.00 3.86
4474 4967 8.231161 GTGCTTAGAGAAATAAACCAGACTTTC 58.769 37.037 0.00 0.00 0.00 2.62
4484 4977 3.141767 ACCAGACTTTCCTTAAGCACC 57.858 47.619 0.00 0.00 37.37 5.01
4485 4978 2.076863 CCAGACTTTCCTTAAGCACCG 58.923 52.381 0.00 0.00 37.37 4.94
4511 5004 4.679905 GCTTATTTGTACAGGGTAGACGCT 60.680 45.833 0.00 0.00 39.95 5.07
4518 5011 5.009631 TGTACAGGGTAGACGCTTAACTAA 58.990 41.667 0.00 0.00 37.00 2.24
4561 5054 2.154462 CACCGGTGCTTCAGAAAATCT 58.846 47.619 24.02 0.00 0.00 2.40
4563 5056 1.394917 CCGGTGCTTCAGAAAATCTCG 59.605 52.381 0.00 0.00 0.00 4.04
4583 5076 5.413523 TCTCGGTTTATTTTTCTAAGCACCC 59.586 40.000 0.00 0.00 0.00 4.61
4585 5078 4.461431 CGGTTTATTTTTCTAAGCACCCCT 59.539 41.667 0.00 0.00 0.00 4.79
4596 5089 1.127343 AGCACCCCTCTAAGCATCTC 58.873 55.000 0.00 0.00 0.00 2.75
4597 5090 0.107643 GCACCCCTCTAAGCATCTCC 59.892 60.000 0.00 0.00 0.00 3.71
4611 5104 2.301346 CATCTCCCATTGTACAAGGCC 58.699 52.381 14.66 0.00 0.00 5.19
4613 5106 1.559682 TCTCCCATTGTACAAGGCCTC 59.440 52.381 14.66 0.00 0.00 4.70
4627 5120 1.490910 AGGCCTCTAAACATAGCACCC 59.509 52.381 0.00 0.00 0.00 4.61
4689 6459 2.287788 CGGAGCTTCACACAAATTGCTT 60.288 45.455 0.00 0.00 0.00 3.91
4692 6462 2.431782 AGCTTCACACAAATTGCTTGGT 59.568 40.909 0.00 0.00 39.56 3.67
4699 6469 0.325602 CAAATTGCTTGGTGGGCCAT 59.674 50.000 10.70 0.00 45.56 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.368875 CAATACCGCCTCTGGTCCTAAT 59.631 50.000 0.00 0.00 42.62 1.73
1 2 1.760613 CAATACCGCCTCTGGTCCTAA 59.239 52.381 0.00 0.00 42.62 2.69
2 3 1.342674 ACAATACCGCCTCTGGTCCTA 60.343 52.381 0.00 0.00 42.62 2.94
3 4 0.617820 ACAATACCGCCTCTGGTCCT 60.618 55.000 0.00 0.00 42.62 3.85
5 6 0.249398 ACACAATACCGCCTCTGGTC 59.751 55.000 0.00 0.00 42.62 4.02
6 7 0.249398 GACACAATACCGCCTCTGGT 59.751 55.000 0.00 0.00 46.26 4.00
7 8 0.806102 CGACACAATACCGCCTCTGG 60.806 60.000 0.00 0.00 0.00 3.86
8 9 1.421410 GCGACACAATACCGCCTCTG 61.421 60.000 0.00 0.00 42.77 3.35
9 10 1.153628 GCGACACAATACCGCCTCT 60.154 57.895 0.00 0.00 42.77 3.69
10 11 2.514013 CGCGACACAATACCGCCTC 61.514 63.158 0.00 0.00 45.39 4.70
11 12 2.508439 CGCGACACAATACCGCCT 60.508 61.111 0.00 0.00 45.39 5.52
12 13 2.507547 TCGCGACACAATACCGCC 60.508 61.111 3.71 0.00 45.39 6.13
13 14 2.693285 GTCGCGACACAATACCGC 59.307 61.111 33.09 1.92 44.81 5.68
14 15 1.444724 TGGTCGCGACACAATACCG 60.445 57.895 37.26 0.00 32.69 4.02
15 16 0.668096 TGTGGTCGCGACACAATACC 60.668 55.000 37.26 21.32 45.05 2.73
16 17 2.817035 TGTGGTCGCGACACAATAC 58.183 52.632 37.26 25.65 45.05 1.89
20 21 1.666553 GGATTGTGGTCGCGACACA 60.667 57.895 37.26 32.16 46.22 3.72
21 22 2.388232 GGGATTGTGGTCGCGACAC 61.388 63.158 37.26 30.30 39.26 3.67
22 23 2.047655 GGGATTGTGGTCGCGACA 60.048 61.111 37.26 22.12 0.00 4.35
23 24 1.669760 TTGGGATTGTGGTCGCGAC 60.670 57.895 30.67 30.67 34.11 5.19
24 25 1.669760 GTTGGGATTGTGGTCGCGA 60.670 57.895 3.71 3.71 34.11 5.87
25 26 2.686816 GGTTGGGATTGTGGTCGCG 61.687 63.158 0.00 0.00 34.11 5.87
26 27 2.340328 GGGTTGGGATTGTGGTCGC 61.340 63.158 0.00 0.00 0.00 5.19
27 28 2.038269 CGGGTTGGGATTGTGGTCG 61.038 63.158 0.00 0.00 0.00 4.79
28 29 0.958876 GTCGGGTTGGGATTGTGGTC 60.959 60.000 0.00 0.00 0.00 4.02
29 30 1.074248 GTCGGGTTGGGATTGTGGT 59.926 57.895 0.00 0.00 0.00 4.16
30 31 0.676782 GAGTCGGGTTGGGATTGTGG 60.677 60.000 0.00 0.00 0.00 4.17
31 32 1.019278 CGAGTCGGGTTGGGATTGTG 61.019 60.000 4.10 0.00 0.00 3.33
32 33 1.295423 CGAGTCGGGTTGGGATTGT 59.705 57.895 4.10 0.00 0.00 2.71
33 34 1.449601 CCGAGTCGGGTTGGGATTG 60.450 63.158 24.39 0.00 44.15 2.67
34 35 2.987125 CCGAGTCGGGTTGGGATT 59.013 61.111 24.39 0.00 44.15 3.01
44 45 6.425504 AGTATACGAATTAGAAACCGAGTCG 58.574 40.000 5.29 5.29 0.00 4.18
45 46 9.163903 GTAAGTATACGAATTAGAAACCGAGTC 57.836 37.037 0.00 0.00 0.00 3.36
46 47 8.131731 GGTAAGTATACGAATTAGAAACCGAGT 58.868 37.037 0.00 0.00 32.51 4.18
47 48 7.322222 CGGTAAGTATACGAATTAGAAACCGAG 59.678 40.741 14.10 0.00 45.79 4.63
48 49 7.132213 CGGTAAGTATACGAATTAGAAACCGA 58.868 38.462 14.10 0.00 45.79 4.69
49 50 6.360681 CCGGTAAGTATACGAATTAGAAACCG 59.639 42.308 0.00 0.00 43.34 4.44
50 51 7.379797 GTCCGGTAAGTATACGAATTAGAAACC 59.620 40.741 0.00 0.00 32.51 3.27
51 52 7.915397 TGTCCGGTAAGTATACGAATTAGAAAC 59.085 37.037 0.00 0.00 32.51 2.78
52 53 7.995289 TGTCCGGTAAGTATACGAATTAGAAA 58.005 34.615 0.00 0.00 32.51 2.52
53 54 7.566760 TGTCCGGTAAGTATACGAATTAGAA 57.433 36.000 0.00 0.00 32.51 2.10
54 55 7.498900 TCTTGTCCGGTAAGTATACGAATTAGA 59.501 37.037 16.82 0.00 32.51 2.10
55 56 7.642669 TCTTGTCCGGTAAGTATACGAATTAG 58.357 38.462 16.82 0.00 32.51 1.73
56 57 7.566760 TCTTGTCCGGTAAGTATACGAATTA 57.433 36.000 16.82 0.00 32.51 1.40
57 58 6.455360 TCTTGTCCGGTAAGTATACGAATT 57.545 37.500 16.82 0.00 32.51 2.17
58 59 6.455360 TTCTTGTCCGGTAAGTATACGAAT 57.545 37.500 16.82 0.00 32.51 3.34
59 60 5.895636 TTCTTGTCCGGTAAGTATACGAA 57.104 39.130 16.82 4.88 32.51 3.85
60 61 5.895636 TTTCTTGTCCGGTAAGTATACGA 57.104 39.130 16.82 0.12 32.51 3.43
61 62 6.267817 TGATTTCTTGTCCGGTAAGTATACG 58.732 40.000 16.82 0.00 32.51 3.06
62 63 8.483307 TTTGATTTCTTGTCCGGTAAGTATAC 57.517 34.615 16.82 0.00 0.00 1.47
63 64 9.504708 TTTTTGATTTCTTGTCCGGTAAGTATA 57.495 29.630 16.82 7.61 0.00 1.47
64 65 7.989416 TTTTGATTTCTTGTCCGGTAAGTAT 57.011 32.000 16.82 12.75 0.00 2.12
65 66 7.499895 AGTTTTTGATTTCTTGTCCGGTAAGTA 59.500 33.333 16.82 8.23 0.00 2.24
66 67 6.320418 AGTTTTTGATTTCTTGTCCGGTAAGT 59.680 34.615 16.82 2.96 0.00 2.24
67 68 6.735130 AGTTTTTGATTTCTTGTCCGGTAAG 58.265 36.000 0.00 8.13 0.00 2.34
68 69 6.702716 AGTTTTTGATTTCTTGTCCGGTAA 57.297 33.333 0.00 0.00 0.00 2.85
69 70 6.095720 ACAAGTTTTTGATTTCTTGTCCGGTA 59.904 34.615 0.00 0.00 44.36 4.02
70 71 5.105513 ACAAGTTTTTGATTTCTTGTCCGGT 60.106 36.000 0.00 0.00 44.36 5.28
71 72 5.348164 ACAAGTTTTTGATTTCTTGTCCGG 58.652 37.500 0.00 0.00 44.36 5.14
76 77 5.811613 TGGCAGACAAGTTTTTGATTTCTTG 59.188 36.000 0.00 0.00 41.74 3.02
77 78 5.976458 TGGCAGACAAGTTTTTGATTTCTT 58.024 33.333 0.00 0.00 37.73 2.52
78 79 5.596836 TGGCAGACAAGTTTTTGATTTCT 57.403 34.783 0.00 0.00 37.73 2.52
94 95 7.087639 CCGTTTTATTTTTATGTCTTGGCAGA 58.912 34.615 0.00 0.00 0.00 4.26
95 96 6.183360 GCCGTTTTATTTTTATGTCTTGGCAG 60.183 38.462 0.00 0.00 36.32 4.85
96 97 5.635700 GCCGTTTTATTTTTATGTCTTGGCA 59.364 36.000 0.00 0.00 36.32 4.92
97 98 5.635700 TGCCGTTTTATTTTTATGTCTTGGC 59.364 36.000 0.00 0.00 36.81 4.52
98 99 7.644986 TTGCCGTTTTATTTTTATGTCTTGG 57.355 32.000 0.00 0.00 0.00 3.61
99 100 9.579610 CTTTTGCCGTTTTATTTTTATGTCTTG 57.420 29.630 0.00 0.00 0.00 3.02
100 101 8.769891 CCTTTTGCCGTTTTATTTTTATGTCTT 58.230 29.630 0.00 0.00 0.00 3.01
101 102 8.145122 TCCTTTTGCCGTTTTATTTTTATGTCT 58.855 29.630 0.00 0.00 0.00 3.41
102 103 8.300495 TCCTTTTGCCGTTTTATTTTTATGTC 57.700 30.769 0.00 0.00 0.00 3.06
103 104 8.664211 TTCCTTTTGCCGTTTTATTTTTATGT 57.336 26.923 0.00 0.00 0.00 2.29
104 105 7.744276 GCTTCCTTTTGCCGTTTTATTTTTATG 59.256 33.333 0.00 0.00 0.00 1.90
105 106 7.659799 AGCTTCCTTTTGCCGTTTTATTTTTAT 59.340 29.630 0.00 0.00 0.00 1.40
106 107 6.987404 AGCTTCCTTTTGCCGTTTTATTTTTA 59.013 30.769 0.00 0.00 0.00 1.52
107 108 5.820423 AGCTTCCTTTTGCCGTTTTATTTTT 59.180 32.000 0.00 0.00 0.00 1.94
108 109 5.236263 CAGCTTCCTTTTGCCGTTTTATTTT 59.764 36.000 0.00 0.00 0.00 1.82
109 110 4.749598 CAGCTTCCTTTTGCCGTTTTATTT 59.250 37.500 0.00 0.00 0.00 1.40
110 111 4.306600 CAGCTTCCTTTTGCCGTTTTATT 58.693 39.130 0.00 0.00 0.00 1.40
111 112 3.860754 GCAGCTTCCTTTTGCCGTTTTAT 60.861 43.478 0.00 0.00 31.79 1.40
112 113 2.544903 GCAGCTTCCTTTTGCCGTTTTA 60.545 45.455 0.00 0.00 31.79 1.52
113 114 1.806247 GCAGCTTCCTTTTGCCGTTTT 60.806 47.619 0.00 0.00 31.79 2.43
114 115 0.249447 GCAGCTTCCTTTTGCCGTTT 60.249 50.000 0.00 0.00 31.79 3.60
115 116 1.363807 GCAGCTTCCTTTTGCCGTT 59.636 52.632 0.00 0.00 31.79 4.44
116 117 2.908073 CGCAGCTTCCTTTTGCCGT 61.908 57.895 0.00 0.00 34.42 5.68
117 118 2.126734 CGCAGCTTCCTTTTGCCG 60.127 61.111 0.00 0.00 34.42 5.69
136 137 2.283529 GGTCCGTCTCCTTGCAGGA 61.284 63.158 0.00 0.71 43.43 3.86
137 138 2.266055 GGTCCGTCTCCTTGCAGG 59.734 66.667 0.00 0.00 36.46 4.85
138 139 2.125912 CGGTCCGTCTCCTTGCAG 60.126 66.667 2.08 0.00 0.00 4.41
139 140 3.691342 CCGGTCCGTCTCCTTGCA 61.691 66.667 11.06 0.00 0.00 4.08
140 141 2.240162 AATCCGGTCCGTCTCCTTGC 62.240 60.000 11.06 0.00 0.00 4.01
141 142 0.249398 AAATCCGGTCCGTCTCCTTG 59.751 55.000 11.06 0.00 0.00 3.61
142 143 0.535797 GAAATCCGGTCCGTCTCCTT 59.464 55.000 11.06 0.00 0.00 3.36
143 144 1.664321 CGAAATCCGGTCCGTCTCCT 61.664 60.000 11.06 0.00 33.91 3.69
144 145 1.226888 CGAAATCCGGTCCGTCTCC 60.227 63.158 11.06 0.00 33.91 3.71
145 146 4.396854 CGAAATCCGGTCCGTCTC 57.603 61.111 11.06 0.06 33.91 3.36
154 155 1.772063 GAATGGTCCGCCGAAATCCG 61.772 60.000 0.00 0.00 37.67 4.18
155 156 1.772063 CGAATGGTCCGCCGAAATCC 61.772 60.000 0.00 0.00 37.67 3.01
156 157 1.641677 CGAATGGTCCGCCGAAATC 59.358 57.895 0.00 0.00 37.67 2.17
157 158 2.469516 GCGAATGGTCCGCCGAAAT 61.470 57.895 0.00 0.00 46.22 2.17
158 159 3.122323 GCGAATGGTCCGCCGAAA 61.122 61.111 0.00 0.00 46.22 3.46
165 166 4.162690 AGGCGAGGCGAATGGTCC 62.163 66.667 0.00 0.00 0.00 4.46
166 167 2.586357 GAGGCGAGGCGAATGGTC 60.586 66.667 0.00 0.00 0.00 4.02
167 168 4.514577 CGAGGCGAGGCGAATGGT 62.515 66.667 0.00 0.00 0.00 3.55
168 169 4.207281 TCGAGGCGAGGCGAATGG 62.207 66.667 0.00 0.00 33.04 3.16
186 187 4.897856 AAAACCACACGCACGCGC 62.898 61.111 12.02 0.00 44.19 6.86
187 188 2.720750 GAAAACCACACGCACGCG 60.721 61.111 10.36 10.36 46.03 6.01
188 189 2.353030 GGAAAACCACACGCACGC 60.353 61.111 0.00 0.00 0.00 5.34
189 190 1.720694 AAGGGAAAACCACACGCACG 61.721 55.000 0.00 0.00 43.89 5.34
190 191 0.458260 AAAGGGAAAACCACACGCAC 59.542 50.000 0.00 0.00 43.89 5.34
191 192 0.741915 GAAAGGGAAAACCACACGCA 59.258 50.000 0.00 0.00 43.89 5.24
192 193 1.001706 GAGAAAGGGAAAACCACACGC 60.002 52.381 0.00 0.00 43.89 5.34
193 194 2.572290 AGAGAAAGGGAAAACCACACG 58.428 47.619 0.00 0.00 43.89 4.49
194 195 4.207955 AGAAGAGAAAGGGAAAACCACAC 58.792 43.478 0.00 0.00 43.89 3.82
195 196 4.080015 TGAGAAGAGAAAGGGAAAACCACA 60.080 41.667 0.00 0.00 43.89 4.17
196 197 4.276183 GTGAGAAGAGAAAGGGAAAACCAC 59.724 45.833 0.00 0.00 43.89 4.16
197 198 4.080015 TGTGAGAAGAGAAAGGGAAAACCA 60.080 41.667 0.00 0.00 43.89 3.67
198 199 4.276183 GTGTGAGAAGAGAAAGGGAAAACC 59.724 45.833 0.00 0.00 40.67 3.27
199 200 4.881850 TGTGTGAGAAGAGAAAGGGAAAAC 59.118 41.667 0.00 0.00 0.00 2.43
200 201 4.881850 GTGTGTGAGAAGAGAAAGGGAAAA 59.118 41.667 0.00 0.00 0.00 2.29
201 202 4.451900 GTGTGTGAGAAGAGAAAGGGAAA 58.548 43.478 0.00 0.00 0.00 3.13
202 203 3.181454 GGTGTGTGAGAAGAGAAAGGGAA 60.181 47.826 0.00 0.00 0.00 3.97
203 204 2.368875 GGTGTGTGAGAAGAGAAAGGGA 59.631 50.000 0.00 0.00 0.00 4.20
204 205 2.104792 TGGTGTGTGAGAAGAGAAAGGG 59.895 50.000 0.00 0.00 0.00 3.95
205 206 3.134458 GTGGTGTGTGAGAAGAGAAAGG 58.866 50.000 0.00 0.00 0.00 3.11
206 207 4.065321 AGTGGTGTGTGAGAAGAGAAAG 57.935 45.455 0.00 0.00 0.00 2.62
207 208 4.487714 AAGTGGTGTGTGAGAAGAGAAA 57.512 40.909 0.00 0.00 0.00 2.52
208 209 4.893524 TCTAAGTGGTGTGTGAGAAGAGAA 59.106 41.667 0.00 0.00 0.00 2.87
209 210 4.470602 TCTAAGTGGTGTGTGAGAAGAGA 58.529 43.478 0.00 0.00 0.00 3.10
210 211 4.279671 ACTCTAAGTGGTGTGTGAGAAGAG 59.720 45.833 0.00 0.00 35.27 2.85
211 212 4.038042 CACTCTAAGTGGTGTGTGAGAAGA 59.962 45.833 0.00 0.00 42.35 2.87
212 213 4.302455 CACTCTAAGTGGTGTGTGAGAAG 58.698 47.826 0.00 0.00 42.35 2.85
213 214 4.322080 CACTCTAAGTGGTGTGTGAGAA 57.678 45.455 0.00 0.00 42.35 2.87
224 225 3.056465 GGTTCTCTCCACCACTCTAAGTG 60.056 52.174 0.01 0.01 45.53 3.16
225 226 3.166679 GGTTCTCTCCACCACTCTAAGT 58.833 50.000 0.00 0.00 34.04 2.24
226 227 2.498078 GGGTTCTCTCCACCACTCTAAG 59.502 54.545 0.00 0.00 35.80 2.18
227 228 2.158219 TGGGTTCTCTCCACCACTCTAA 60.158 50.000 0.00 0.00 35.80 2.10
228 229 1.431633 TGGGTTCTCTCCACCACTCTA 59.568 52.381 0.00 0.00 35.80 2.43
229 230 0.191064 TGGGTTCTCTCCACCACTCT 59.809 55.000 0.00 0.00 35.80 3.24
230 231 2.759985 TGGGTTCTCTCCACCACTC 58.240 57.895 0.00 0.00 35.80 3.51
236 237 6.782988 CCTCTTTATATAGTGGGTTCTCTCCA 59.217 42.308 3.99 0.00 0.00 3.86
237 238 6.783482 ACCTCTTTATATAGTGGGTTCTCTCC 59.217 42.308 13.64 0.00 33.97 3.71
238 239 7.039574 GGACCTCTTTATATAGTGGGTTCTCTC 60.040 44.444 13.64 3.72 33.97 3.20
239 240 6.783482 GGACCTCTTTATATAGTGGGTTCTCT 59.217 42.308 13.64 0.00 33.97 3.10
240 241 6.553852 TGGACCTCTTTATATAGTGGGTTCTC 59.446 42.308 13.64 4.52 33.97 2.87
241 242 6.449956 TGGACCTCTTTATATAGTGGGTTCT 58.550 40.000 13.64 0.00 33.97 3.01
242 243 6.742559 TGGACCTCTTTATATAGTGGGTTC 57.257 41.667 13.64 10.76 33.97 3.62
243 244 6.677076 AGTTGGACCTCTTTATATAGTGGGTT 59.323 38.462 13.64 0.00 33.97 4.11
244 245 6.210522 AGTTGGACCTCTTTATATAGTGGGT 58.789 40.000 13.64 11.24 33.97 4.51
245 246 6.555360 AGAGTTGGACCTCTTTATATAGTGGG 59.445 42.308 13.64 8.85 38.69 4.61
246 247 7.604657 AGAGTTGGACCTCTTTATATAGTGG 57.395 40.000 9.07 9.07 38.69 4.00
257 258 5.117406 AGTTGAAAAAGAGTTGGACCTCT 57.883 39.130 0.00 0.00 43.65 3.69
258 259 5.221067 GGAAGTTGAAAAAGAGTTGGACCTC 60.221 44.000 0.00 0.00 0.00 3.85
259 260 4.645136 GGAAGTTGAAAAAGAGTTGGACCT 59.355 41.667 0.00 0.00 0.00 3.85
260 261 4.401202 TGGAAGTTGAAAAAGAGTTGGACC 59.599 41.667 0.00 0.00 0.00 4.46
261 262 5.576447 TGGAAGTTGAAAAAGAGTTGGAC 57.424 39.130 0.00 0.00 0.00 4.02
262 263 5.127031 CCTTGGAAGTTGAAAAAGAGTTGGA 59.873 40.000 0.00 0.00 0.00 3.53
263 264 5.105351 ACCTTGGAAGTTGAAAAAGAGTTGG 60.105 40.000 0.00 0.00 0.00 3.77
264 265 5.807011 CACCTTGGAAGTTGAAAAAGAGTTG 59.193 40.000 0.00 0.00 0.00 3.16
265 266 5.105351 CCACCTTGGAAGTTGAAAAAGAGTT 60.105 40.000 0.00 0.00 40.96 3.01
266 267 4.402474 CCACCTTGGAAGTTGAAAAAGAGT 59.598 41.667 0.00 0.00 40.96 3.24
267 268 4.202151 CCCACCTTGGAAGTTGAAAAAGAG 60.202 45.833 0.00 0.00 40.96 2.85
268 269 3.704061 CCCACCTTGGAAGTTGAAAAAGA 59.296 43.478 0.00 0.00 40.96 2.52
269 270 3.704061 TCCCACCTTGGAAGTTGAAAAAG 59.296 43.478 0.00 0.00 40.96 2.27
270 271 3.449377 GTCCCACCTTGGAAGTTGAAAAA 59.551 43.478 0.00 0.00 40.96 1.94
271 272 3.028130 GTCCCACCTTGGAAGTTGAAAA 58.972 45.455 0.00 0.00 40.96 2.29
272 273 2.243736 AGTCCCACCTTGGAAGTTGAAA 59.756 45.455 0.00 0.00 40.96 2.69
273 274 1.850345 AGTCCCACCTTGGAAGTTGAA 59.150 47.619 0.00 0.00 40.96 2.69
274 275 1.518367 AGTCCCACCTTGGAAGTTGA 58.482 50.000 0.00 0.00 40.96 3.18
275 276 3.502123 TTAGTCCCACCTTGGAAGTTG 57.498 47.619 0.00 0.00 40.96 3.16
276 277 3.462205 AGTTTAGTCCCACCTTGGAAGTT 59.538 43.478 0.00 0.00 40.96 2.66
277 278 3.053826 AGTTTAGTCCCACCTTGGAAGT 58.946 45.455 0.00 0.00 40.96 3.01
278 279 3.790089 AGTTTAGTCCCACCTTGGAAG 57.210 47.619 0.00 0.00 40.96 3.46
279 280 4.506095 GCTAAGTTTAGTCCCACCTTGGAA 60.506 45.833 0.00 0.00 35.80 3.53
280 281 3.008704 GCTAAGTTTAGTCCCACCTTGGA 59.991 47.826 0.00 0.00 34.74 3.53
281 282 3.244770 TGCTAAGTTTAGTCCCACCTTGG 60.245 47.826 1.28 0.00 33.54 3.61
282 283 3.751698 GTGCTAAGTTTAGTCCCACCTTG 59.248 47.826 1.28 0.00 33.32 3.61
283 284 3.244805 GGTGCTAAGTTTAGTCCCACCTT 60.245 47.826 14.67 0.00 37.91 3.50
284 285 2.305052 GGTGCTAAGTTTAGTCCCACCT 59.695 50.000 14.67 0.00 37.91 4.00
285 286 2.039348 TGGTGCTAAGTTTAGTCCCACC 59.961 50.000 14.90 14.90 39.67 4.61
286 287 3.072211 GTGGTGCTAAGTTTAGTCCCAC 58.928 50.000 17.96 17.96 41.64 4.61
287 288 2.039348 GGTGGTGCTAAGTTTAGTCCCA 59.961 50.000 7.26 7.26 33.36 4.37
288 289 2.039348 TGGTGGTGCTAAGTTTAGTCCC 59.961 50.000 1.28 2.54 33.32 4.46
289 290 3.072211 GTGGTGGTGCTAAGTTTAGTCC 58.928 50.000 1.28 5.06 33.32 3.85
290 291 4.004196 AGTGGTGGTGCTAAGTTTAGTC 57.996 45.455 1.28 0.00 33.32 2.59
291 292 4.134563 CAAGTGGTGGTGCTAAGTTTAGT 58.865 43.478 1.28 0.00 33.32 2.24
292 293 3.058224 GCAAGTGGTGGTGCTAAGTTTAG 60.058 47.826 0.00 0.00 37.78 1.85
293 294 2.882137 GCAAGTGGTGGTGCTAAGTTTA 59.118 45.455 0.00 0.00 37.78 2.01
294 295 1.681264 GCAAGTGGTGGTGCTAAGTTT 59.319 47.619 0.00 0.00 37.78 2.66
295 296 1.318576 GCAAGTGGTGGTGCTAAGTT 58.681 50.000 0.00 0.00 37.78 2.66
296 297 0.537371 GGCAAGTGGTGGTGCTAAGT 60.537 55.000 0.00 0.00 40.70 2.24
297 298 0.537143 TGGCAAGTGGTGGTGCTAAG 60.537 55.000 0.00 0.00 40.70 2.18
298 299 0.112218 ATGGCAAGTGGTGGTGCTAA 59.888 50.000 0.00 0.00 40.70 3.09
299 300 0.112218 AATGGCAAGTGGTGGTGCTA 59.888 50.000 0.00 0.00 40.70 3.49
300 301 0.760189 AAATGGCAAGTGGTGGTGCT 60.760 50.000 0.00 0.00 40.70 4.40
301 302 0.106521 AAAATGGCAAGTGGTGGTGC 59.893 50.000 0.00 0.00 40.14 5.01
302 303 2.363680 TGTAAAATGGCAAGTGGTGGTG 59.636 45.455 0.00 0.00 0.00 4.17
303 304 2.364002 GTGTAAAATGGCAAGTGGTGGT 59.636 45.455 0.00 0.00 0.00 4.16
304 305 2.363680 TGTGTAAAATGGCAAGTGGTGG 59.636 45.455 0.00 0.00 0.00 4.61
305 306 3.724508 TGTGTAAAATGGCAAGTGGTG 57.275 42.857 0.00 0.00 0.00 4.17
306 307 3.006752 CCATGTGTAAAATGGCAAGTGGT 59.993 43.478 0.00 0.00 46.64 4.16
307 308 3.587923 CCATGTGTAAAATGGCAAGTGG 58.412 45.455 0.00 0.00 46.64 4.00
315 316 2.667481 CGCAAAGCCCATGTGTAAAATG 59.333 45.455 0.00 0.00 0.00 2.32
316 317 2.560542 TCGCAAAGCCCATGTGTAAAAT 59.439 40.909 0.00 0.00 0.00 1.82
317 318 1.957177 TCGCAAAGCCCATGTGTAAAA 59.043 42.857 0.00 0.00 0.00 1.52
318 319 1.610363 TCGCAAAGCCCATGTGTAAA 58.390 45.000 0.00 0.00 0.00 2.01
319 320 1.832883 ATCGCAAAGCCCATGTGTAA 58.167 45.000 0.00 0.00 0.00 2.41
320 321 1.832883 AATCGCAAAGCCCATGTGTA 58.167 45.000 0.00 0.00 0.00 2.90
321 322 0.968405 AAATCGCAAAGCCCATGTGT 59.032 45.000 0.00 0.00 0.00 3.72
322 323 1.067706 TGAAATCGCAAAGCCCATGTG 60.068 47.619 0.00 0.00 0.00 3.21
323 324 1.203052 CTGAAATCGCAAAGCCCATGT 59.797 47.619 0.00 0.00 0.00 3.21
324 325 1.473677 TCTGAAATCGCAAAGCCCATG 59.526 47.619 0.00 0.00 0.00 3.66
325 326 1.838112 TCTGAAATCGCAAAGCCCAT 58.162 45.000 0.00 0.00 0.00 4.00
326 327 1.614996 TTCTGAAATCGCAAAGCCCA 58.385 45.000 0.00 0.00 0.00 5.36
327 328 2.723124 TTTCTGAAATCGCAAAGCCC 57.277 45.000 0.00 0.00 0.00 5.19
328 329 3.181527 GCAATTTCTGAAATCGCAAAGCC 60.182 43.478 18.46 0.00 31.24 4.35
329 330 3.676646 AGCAATTTCTGAAATCGCAAAGC 59.323 39.130 23.51 15.96 33.29 3.51
330 331 6.020121 CCATAGCAATTTCTGAAATCGCAAAG 60.020 38.462 23.51 13.80 33.29 2.77
331 332 5.806502 CCATAGCAATTTCTGAAATCGCAAA 59.193 36.000 23.51 13.83 33.29 3.68
332 333 5.342433 CCATAGCAATTTCTGAAATCGCAA 58.658 37.500 23.51 8.97 33.29 4.85
333 334 4.202040 CCCATAGCAATTTCTGAAATCGCA 60.202 41.667 23.51 12.59 33.29 5.10
334 335 4.293415 CCCATAGCAATTTCTGAAATCGC 58.707 43.478 16.26 16.26 31.00 4.58
335 336 4.293415 GCCCATAGCAATTTCTGAAATCG 58.707 43.478 15.43 6.40 42.97 3.34
336 337 4.343239 AGGCCCATAGCAATTTCTGAAATC 59.657 41.667 15.43 5.10 46.50 2.17
337 338 4.292643 AGGCCCATAGCAATTTCTGAAAT 58.707 39.130 9.76 9.76 46.50 2.17
338 339 3.711863 AGGCCCATAGCAATTTCTGAAA 58.288 40.909 5.15 5.15 46.50 2.69
339 340 3.386932 AGGCCCATAGCAATTTCTGAA 57.613 42.857 0.00 0.00 46.50 3.02
340 341 3.748668 GCTAGGCCCATAGCAATTTCTGA 60.749 47.826 17.00 0.00 46.12 3.27
341 342 2.555757 GCTAGGCCCATAGCAATTTCTG 59.444 50.000 17.00 0.00 46.12 3.02
342 343 2.868899 GCTAGGCCCATAGCAATTTCT 58.131 47.619 17.00 0.00 46.12 2.52
356 357 6.901081 ATTGTTAGAATTAATGGGCTAGGC 57.099 37.500 8.00 8.00 0.00 3.93
357 358 8.918202 TGTATTGTTAGAATTAATGGGCTAGG 57.082 34.615 0.00 0.00 0.00 3.02
360 361 9.200817 ACATTGTATTGTTAGAATTAATGGGCT 57.799 29.630 12.56 0.00 0.00 5.19
559 560 1.348036 GTATCCTCAAGATTCCCGGGG 59.652 57.143 23.50 6.77 36.33 5.73
602 603 2.224549 GGAGATCTCTCATACACCGTCG 59.775 54.545 21.81 0.00 44.60 5.12
605 606 3.885901 TGAAGGAGATCTCTCATACACCG 59.114 47.826 21.81 0.00 44.60 4.94
891 895 0.746063 CAAGTTGGCACTCAAAGGCA 59.254 50.000 0.00 0.00 37.08 4.75
918 922 9.918630 ATAATCTTGTTGATTCTTTGACCTTTG 57.081 29.630 0.00 0.00 43.69 2.77
967 971 6.405731 GGGACATTCTATTTGCAGCACAATTA 60.406 38.462 0.00 0.00 38.31 1.40
970 974 3.193267 GGGACATTCTATTTGCAGCACAA 59.807 43.478 0.00 0.00 36.13 3.33
974 978 1.268743 GCGGGACATTCTATTTGCAGC 60.269 52.381 0.00 0.00 0.00 5.25
982 986 7.297936 TCTTCATTTATAGCGGGACATTCTA 57.702 36.000 0.00 0.00 0.00 2.10
1037 1041 0.029300 AAGCGTGTGCATGTGTGTTC 59.971 50.000 0.00 0.00 46.23 3.18
1120 1124 0.882927 TTGTTGCCGGTAGCTGTGTC 60.883 55.000 8.03 0.00 44.23 3.67
1566 1570 5.220931 CCTGCAAACCTCATTAGCAATAGTC 60.221 44.000 0.00 0.00 34.45 2.59
1687 1691 6.015918 TGGAATGAATTTACCTGTGTTCCAT 58.984 36.000 0.00 0.00 39.00 3.41
1707 1711 3.678965 TTAAATATGGGCAGGCTGGAA 57.321 42.857 17.64 0.00 0.00 3.53
1723 1728 7.028926 TGCGACCTCTTTGTTAACAATTAAA 57.971 32.000 21.17 6.10 35.55 1.52
2094 2099 9.771534 GATTAGAATCTTACTGGCATTAGAAGT 57.228 33.333 0.00 0.00 32.66 3.01
2192 2197 4.437930 GCATGCATCCAGAAGTAGTCAAAC 60.438 45.833 14.21 0.00 0.00 2.93
2438 2443 5.794894 AGAGGCATATATGTAAGAAACGGG 58.205 41.667 14.14 0.00 0.00 5.28
2439 2444 6.147821 CCAAGAGGCATATATGTAAGAAACGG 59.852 42.308 14.14 2.96 0.00 4.44
2445 2450 7.984050 CAGTATCCCAAGAGGCATATATGTAAG 59.016 40.741 14.14 0.00 34.51 2.34
2517 2522 6.354938 AGATGAGACATAGTGATTTGTGCAT 58.645 36.000 0.00 0.00 0.00 3.96
2832 2837 4.150451 CCTTTTTGGCAGTAAAGCAAATCG 59.850 41.667 14.97 2.05 35.83 3.34
2933 2938 4.584325 TGCCATTATGCCCTCTTTATTGTC 59.416 41.667 0.00 0.00 0.00 3.18
3109 3122 7.665559 AGTCTAATACAAGTTGATTGCTTTCCA 59.334 33.333 10.54 0.00 43.15 3.53
3147 3160 6.758416 TGAGTGAGACATTGAAATCGATTAGG 59.242 38.462 11.83 0.00 0.00 2.69
3296 3309 3.679083 CGGTACTTGAGAACCAGAATCCC 60.679 52.174 0.00 0.00 35.35 3.85
3305 3318 3.994392 TGATTGCTTCGGTACTTGAGAAC 59.006 43.478 0.00 0.00 0.00 3.01
3516 3530 6.507900 TGAAGTTCTCTACTGTTCAGTTCAG 58.492 40.000 10.74 7.45 37.12 3.02
3517 3531 6.321435 TCTGAAGTTCTCTACTGTTCAGTTCA 59.679 38.462 10.74 5.41 40.39 3.18
3518 3532 6.740110 TCTGAAGTTCTCTACTGTTCAGTTC 58.260 40.000 10.74 1.23 40.39 3.01
3519 3533 6.716934 TCTGAAGTTCTCTACTGTTCAGTT 57.283 37.500 10.74 0.00 40.39 3.16
3520 3534 6.909550 ATCTGAAGTTCTCTACTGTTCAGT 57.090 37.500 10.33 10.33 40.39 3.41
3811 3839 1.601419 TTGGGGTCGGACTTCGCTAG 61.601 60.000 8.23 0.00 39.05 3.42
3917 3949 2.287427 GGCCAAGCATCATCGATTTCAG 60.287 50.000 0.00 0.00 0.00 3.02
3936 3968 2.087646 GACTGGAAGGAAGTGAATGGC 58.912 52.381 0.00 0.00 39.30 4.40
4043 4155 1.866063 GCTGTAGCTTCCGAATCCTCG 60.866 57.143 0.00 0.00 40.43 4.63
4093 4206 7.142680 GGATGTGTCTAGTTATCTGCTACTTC 58.857 42.308 0.00 0.00 0.00 3.01
4112 4225 2.301346 GGGTGATAGGCTTTGGATGTG 58.699 52.381 0.00 0.00 0.00 3.21
4117 4230 5.930837 TTAATTTGGGTGATAGGCTTTGG 57.069 39.130 0.00 0.00 0.00 3.28
4184 4297 2.067365 TATGACGGAGAGCTGCCTAA 57.933 50.000 0.00 0.00 0.00 2.69
4185 4298 1.889170 CATATGACGGAGAGCTGCCTA 59.111 52.381 0.00 0.00 0.00 3.93
4232 4724 0.112606 AGACCAGGACTTCCTCGACA 59.887 55.000 0.00 0.00 46.65 4.35
4254 4746 1.811266 CAACCCAGTCGCCGATGAG 60.811 63.158 0.00 0.00 0.00 2.90
4356 4848 2.202756 GGGTACTGCTCCTTCGCG 60.203 66.667 0.00 0.00 0.00 5.87
4368 4860 5.244178 CCTGTCTAGATATTCCTGTGGGTAC 59.756 48.000 0.00 0.00 0.00 3.34
4371 4863 3.580458 CCCTGTCTAGATATTCCTGTGGG 59.420 52.174 0.00 0.00 0.00 4.61
4411 4904 4.340617 TCCCATTGTACAGGGCTTAAAAG 58.659 43.478 14.16 0.00 45.07 2.27
4418 4911 0.394352 CACCTCCCATTGTACAGGGC 60.394 60.000 14.16 0.00 45.07 5.19
4419 4912 0.394352 GCACCTCCCATTGTACAGGG 60.394 60.000 13.01 13.01 46.90 4.45
4420 4913 0.620556 AGCACCTCCCATTGTACAGG 59.379 55.000 0.00 0.00 0.00 4.00
4421 4914 2.496899 AAGCACCTCCCATTGTACAG 57.503 50.000 0.00 0.00 0.00 2.74
4431 4924 1.307084 ACCTCCCCTAAGCACCTCC 60.307 63.158 0.00 0.00 0.00 4.30
4432 4925 1.908483 CACCTCCCCTAAGCACCTC 59.092 63.158 0.00 0.00 0.00 3.85
4448 4941 7.674471 AAGTCTGGTTTATTTCTCTAAGCAC 57.326 36.000 0.00 0.00 0.00 4.40
4455 4948 8.237949 GCTTAAGGAAAGTCTGGTTTATTTCTC 58.762 37.037 4.29 0.00 37.53 2.87
4469 4962 1.892209 CACCGGTGCTTAAGGAAAGT 58.108 50.000 24.02 0.00 37.53 2.66
4484 4977 2.706890 ACCCTGTACAAATAAGCACCG 58.293 47.619 0.00 0.00 0.00 4.94
4485 4978 4.874396 GTCTACCCTGTACAAATAAGCACC 59.126 45.833 0.00 0.00 0.00 5.01
4511 5004 5.494724 TCTACAGGAGAGACGCTTAGTTAA 58.505 41.667 0.00 0.00 0.00 2.01
4518 5011 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
4558 5051 6.095021 GGGTGCTTAGAAAAATAAACCGAGAT 59.905 38.462 0.00 0.00 0.00 2.75
4559 5052 5.413523 GGGTGCTTAGAAAAATAAACCGAGA 59.586 40.000 0.00 0.00 0.00 4.04
4561 5054 4.460034 GGGGTGCTTAGAAAAATAAACCGA 59.540 41.667 0.00 0.00 0.00 4.69
4563 5056 5.715279 AGAGGGGTGCTTAGAAAAATAAACC 59.285 40.000 0.00 0.00 0.00 3.27
4583 5076 3.853355 ACAATGGGAGATGCTTAGAGG 57.147 47.619 0.00 0.00 0.00 3.69
4585 5078 5.396772 CCTTGTACAATGGGAGATGCTTAGA 60.397 44.000 9.13 0.00 0.00 2.10
4596 5089 3.644966 TTAGAGGCCTTGTACAATGGG 57.355 47.619 6.77 14.91 0.00 4.00
4597 5090 4.331968 TGTTTAGAGGCCTTGTACAATGG 58.668 43.478 6.77 13.26 0.00 3.16
4611 5104 4.437239 CACTGAGGGTGCTATGTTTAGAG 58.563 47.826 0.00 0.00 39.22 2.43
4627 5120 1.661341 GGCTAGACAATGGCACTGAG 58.339 55.000 1.60 0.00 37.06 3.35
4692 6462 1.202989 TGTGTTCTTTAGCATGGCCCA 60.203 47.619 0.00 0.00 0.00 5.36
4699 6469 9.809096 TTTGAATATTTTGTGTGTTCTTTAGCA 57.191 25.926 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.