Multiple sequence alignment - TraesCS4D01G131300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G131300 chr4D 100.000 5152 0 0 1 5152 118242762 118247913 0.000000e+00 9515.0
1 TraesCS4D01G131300 chr4D 100.000 2944 0 0 5619 8562 118248380 118251323 0.000000e+00 5437.0
2 TraesCS4D01G131300 chr4D 94.271 192 10 1 2027 2218 11294565 11294755 8.410000e-75 292.0
3 TraesCS4D01G131300 chr4D 93.976 166 10 0 143 308 74283506 74283671 1.430000e-62 252.0
4 TraesCS4D01G131300 chr4D 95.000 100 4 1 4658 4757 15316026 15316124 1.150000e-33 156.0
5 TraesCS4D01G131300 chr4D 94.118 51 1 1 2970 3018 41339557 41339607 9.220000e-10 76.8
6 TraesCS4D01G131300 chr4A 96.876 2113 35 6 3055 5149 455923855 455925954 0.000000e+00 3507.0
7 TraesCS4D01G131300 chr4A 93.820 1521 37 21 5875 7382 455926905 455928381 0.000000e+00 2235.0
8 TraesCS4D01G131300 chr4A 92.924 749 44 5 7818 8562 455928912 455929655 0.000000e+00 1081.0
9 TraesCS4D01G131300 chr4A 92.528 629 43 3 244 868 455886273 455886901 0.000000e+00 898.0
10 TraesCS4D01G131300 chr4A 96.774 403 12 1 2567 2969 455923112 455923513 0.000000e+00 671.0
11 TraesCS4D01G131300 chr4A 90.533 507 8 5 857 1324 455921813 455922318 1.210000e-177 634.0
12 TraesCS4D01G131300 chr4A 94.133 392 12 6 7374 7756 455928486 455928875 3.440000e-163 586.0
13 TraesCS4D01G131300 chr4A 91.375 371 16 6 1667 2026 455922678 455923043 2.150000e-135 494.0
14 TraesCS4D01G131300 chr4A 97.761 268 5 1 5619 5885 455926057 455926324 2.180000e-125 460.0
15 TraesCS4D01G131300 chr4A 94.667 225 10 2 1 223 455862716 455862940 1.770000e-91 348.0
16 TraesCS4D01G131300 chr4A 96.053 76 3 0 2209 2284 455923036 455923111 3.250000e-24 124.0
17 TraesCS4D01G131300 chr4A 93.750 80 3 2 816 893 455886790 455886869 1.510000e-22 119.0
18 TraesCS4D01G131300 chr4A 95.833 48 2 0 3009 3056 455923522 455923569 2.560000e-10 78.7
19 TraesCS4D01G131300 chr4A 95.122 41 2 0 840 880 143238900 143238940 1.990000e-06 65.8
20 TraesCS4D01G131300 chr4B 94.500 1800 60 12 5875 7643 180246383 180248174 0.000000e+00 2739.0
21 TraesCS4D01G131300 chr4B 94.643 1512 56 9 3159 4662 180243372 180244866 0.000000e+00 2320.0
22 TraesCS4D01G131300 chr4B 93.211 766 31 7 2209 2969 180242580 180243329 0.000000e+00 1107.0
23 TraesCS4D01G131300 chr4B 94.722 701 23 6 822 1510 180237015 180237713 0.000000e+00 1077.0
24 TraesCS4D01G131300 chr4B 91.475 434 33 3 7818 8250 180250235 180250665 2.060000e-165 593.0
25 TraesCS4D01G131300 chr4B 87.580 467 41 9 1565 2026 180242133 180242587 7.610000e-145 525.0
26 TraesCS4D01G131300 chr4B 95.753 259 11 0 5624 5882 180245853 180246111 1.330000e-112 418.0
27 TraesCS4D01G131300 chr4B 89.809 314 30 2 1 312 18471185 18470872 1.340000e-107 401.0
28 TraesCS4D01G131300 chr4B 87.302 315 24 4 8248 8562 180367255 180367553 6.360000e-91 346.0
29 TraesCS4D01G131300 chr4B 97.765 179 4 0 5624 5802 180245311 180245489 8.350000e-80 309.0
30 TraesCS4D01G131300 chr4B 91.388 209 5 2 4949 5144 180245011 180245219 3.050000e-69 274.0
31 TraesCS4D01G131300 chr4B 90.323 217 8 2 4949 5152 180245553 180245769 1.100000e-68 272.0
32 TraesCS4D01G131300 chr4B 95.541 157 6 1 4755 4911 180244864 180245019 5.130000e-62 250.0
33 TraesCS4D01G131300 chr4B 90.526 95 4 3 7724 7818 180250111 180250200 4.200000e-23 121.0
34 TraesCS4D01G131300 chr4B 95.082 61 3 0 4851 4911 180245501 180245561 7.070000e-16 97.1
35 TraesCS4D01G131300 chr4B 86.076 79 5 3 7629 7701 180250036 180250114 7.120000e-11 80.5
36 TraesCS4D01G131300 chr4B 94.737 38 2 0 3009 3046 180243338 180243375 9.280000e-05 60.2
37 TraesCS4D01G131300 chr7D 91.612 763 59 4 1 760 365282398 365283158 0.000000e+00 1050.0
38 TraesCS4D01G131300 chr7D 96.237 186 7 0 2027 2212 48555432 48555247 1.080000e-78 305.0
39 TraesCS4D01G131300 chr7D 95.238 189 8 1 2023 2210 553212734 553212922 1.810000e-76 298.0
40 TraesCS4D01G131300 chr7D 93.909 197 10 2 2020 2215 613502461 613502266 6.500000e-76 296.0
41 TraesCS4D01G131300 chr7D 95.187 187 8 1 2027 2213 229802651 229802466 2.340000e-75 294.0
42 TraesCS4D01G131300 chr7D 88.525 122 11 3 4643 4764 621015869 621015987 2.490000e-30 145.0
43 TraesCS4D01G131300 chr7D 89.796 49 2 2 835 880 235530943 235530991 9.280000e-05 60.2
44 TraesCS4D01G131300 chr6B 81.307 765 132 9 1 760 705847324 705848082 2.040000e-170 610.0
45 TraesCS4D01G131300 chr6B 77.744 328 58 10 7872 8194 134458513 134458830 4.080000e-43 187.0
46 TraesCS4D01G131300 chr5A 78.474 511 94 14 43 543 108865504 108865000 3.860000e-83 320.0
47 TraesCS4D01G131300 chr5A 83.019 106 6 3 5048 5141 573053106 573053001 1.530000e-12 86.1
48 TraesCS4D01G131300 chr5A 85.714 84 5 7 7255 7335 44801057 44801136 1.980000e-11 82.4
49 TraesCS4D01G131300 chr5D 97.253 182 5 0 2027 2208 526241577 526241396 8.350000e-80 309.0
50 TraesCS4D01G131300 chr5D 96.154 182 7 0 2027 2208 434565329 434565510 1.810000e-76 298.0
51 TraesCS4D01G131300 chr5D 76.151 608 96 32 7928 8501 45047980 45047388 3.050000e-69 274.0
52 TraesCS4D01G131300 chr5D 95.146 103 5 0 4655 4757 65990485 65990587 6.880000e-36 163.0
53 TraesCS4D01G131300 chr5D 84.000 100 4 3 5056 5143 454025198 454025099 1.530000e-12 86.1
54 TraesCS4D01G131300 chr5D 92.593 54 4 0 7852 7905 429976979 429976926 2.560000e-10 78.7
55 TraesCS4D01G131300 chr5D 94.118 51 1 1 2970 3018 235300782 235300832 9.220000e-10 76.8
56 TraesCS4D01G131300 chr5D 94.118 51 1 1 2970 3018 237195324 237195374 9.220000e-10 76.8
57 TraesCS4D01G131300 chr1A 97.753 178 3 1 2792 2969 552478845 552478669 1.080000e-78 305.0
58 TraesCS4D01G131300 chr1A 92.195 205 14 2 2018 2221 34890900 34890697 1.090000e-73 289.0
59 TraesCS4D01G131300 chr1A 79.933 299 51 8 1 294 504656431 504656137 2.420000e-50 211.0
60 TraesCS4D01G131300 chr1A 83.516 91 7 7 7252 7339 495674807 495674892 2.560000e-10 78.7
61 TraesCS4D01G131300 chr2D 95.699 186 7 1 2027 2211 4194068 4194253 1.810000e-76 298.0
62 TraesCS4D01G131300 chr2D 94.231 104 5 1 4654 4757 643762848 643762746 3.200000e-34 158.0
63 TraesCS4D01G131300 chr2D 91.071 112 6 4 4661 4770 636776350 636776241 1.930000e-31 148.0
64 TraesCS4D01G131300 chr2D 94.231 52 3 0 5093 5144 592408572 592408623 7.120000e-11 80.5
65 TraesCS4D01G131300 chr2D 92.593 54 1 2 2972 3023 250630442 250630390 3.310000e-09 75.0
66 TraesCS4D01G131300 chr3B 75.602 623 104 37 7913 8501 405944654 405944046 1.830000e-66 265.0
67 TraesCS4D01G131300 chr3B 76.526 426 78 16 2 418 660778234 660777822 6.730000e-51 213.0
68 TraesCS4D01G131300 chr3B 86.364 88 5 7 7250 7335 135685001 135685083 1.180000e-13 89.8
69 TraesCS4D01G131300 chr2B 75.602 623 104 37 7913 8501 153119450 153120058 1.830000e-66 265.0
70 TraesCS4D01G131300 chr2B 90.000 60 4 1 2972 3029 453811143 453811202 9.220000e-10 76.8
71 TraesCS4D01G131300 chr2B 95.000 40 2 0 841 880 653617154 653617115 7.180000e-06 63.9
72 TraesCS4D01G131300 chr1D 75.076 658 117 28 7879 8501 377000077 376999432 6.590000e-66 263.0
73 TraesCS4D01G131300 chr1D 95.000 100 5 0 4661 4760 354519017 354518918 3.200000e-34 158.0
74 TraesCS4D01G131300 chr1D 84.946 93 6 8 7252 7341 358222638 358222551 4.260000e-13 87.9
75 TraesCS4D01G131300 chr2A 78.019 414 80 8 7872 8280 633528508 633528915 5.130000e-62 250.0
76 TraesCS4D01G131300 chr2A 92.523 107 8 0 4659 4765 16263675 16263569 4.140000e-33 154.0
77 TraesCS4D01G131300 chr2A 90.000 60 4 1 2972 3029 517812846 517812905 9.220000e-10 76.8
78 TraesCS4D01G131300 chr2A 97.619 42 1 0 5103 5144 726984383 726984424 1.190000e-08 73.1
79 TraesCS4D01G131300 chr7A 78.378 296 56 7 1 291 648358058 648358350 1.470000e-42 185.0
80 TraesCS4D01G131300 chr7A 87.059 85 3 7 7252 7333 652009241 652009320 1.180000e-13 89.8
81 TraesCS4D01G131300 chr7A 79.646 113 11 3 5047 5147 49135793 49135681 4.290000e-08 71.3
82 TraesCS4D01G131300 chr7A 95.122 41 1 1 841 880 585473441 585473401 7.180000e-06 63.9
83 TraesCS4D01G131300 chr7A 100.000 29 0 0 5115 5143 651640437 651640409 4.000000e-03 54.7
84 TraesCS4D01G131300 chr5B 96.907 97 3 0 4661 4757 425880120 425880216 6.880000e-36 163.0
85 TraesCS4D01G131300 chr5B 94.231 52 3 0 5098 5149 554765755 554765704 7.120000e-11 80.5
86 TraesCS4D01G131300 chr5B 94.231 52 0 3 2969 3018 99134514 99134464 9.220000e-10 76.8
87 TraesCS4D01G131300 chr5B 83.696 92 4 8 7252 7341 458801887 458801969 9.220000e-10 76.8
88 TraesCS4D01G131300 chr5B 88.462 52 6 0 7854 7905 519192306 519192255 7.180000e-06 63.9
89 TraesCS4D01G131300 chr6A 83.516 91 7 6 7250 7335 4785813 4785900 2.560000e-10 78.7
90 TraesCS4D01G131300 chr3D 95.918 49 0 1 2970 3016 608805078 608805126 2.560000e-10 78.7
91 TraesCS4D01G131300 chr3D 88.710 62 4 2 2970 3029 526509339 526509279 1.190000e-08 73.1
92 TraesCS4D01G131300 chr7B 92.683 41 3 0 840 880 731021970 731022010 9.280000e-05 60.2
93 TraesCS4D01G131300 chr7B 97.059 34 1 0 5115 5148 615743059 615743026 3.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G131300 chr4D 118242762 118251323 8561 False 7476.00 9515 100.000000 1 8562 2 chr4D.!!$F5 8561
1 TraesCS4D01G131300 chr4A 455921813 455929655 7842 False 987.07 3507 94.608200 857 8562 10 chr4A.!!$F4 7705
2 TraesCS4D01G131300 chr4A 455886273 455886901 628 False 508.50 898 93.139000 244 893 2 chr4A.!!$F3 649
3 TraesCS4D01G131300 chr4B 180237015 180237713 698 False 1077.00 1077 94.722000 822 1510 1 chr4B.!!$F1 688
4 TraesCS4D01G131300 chr4B 180242133 180250665 8532 False 654.70 2739 92.757143 1565 8250 14 chr4B.!!$F3 6685
5 TraesCS4D01G131300 chr7D 365282398 365283158 760 False 1050.00 1050 91.612000 1 760 1 chr7D.!!$F2 759
6 TraesCS4D01G131300 chr6B 705847324 705848082 758 False 610.00 610 81.307000 1 760 1 chr6B.!!$F2 759
7 TraesCS4D01G131300 chr5A 108865000 108865504 504 True 320.00 320 78.474000 43 543 1 chr5A.!!$R1 500
8 TraesCS4D01G131300 chr5D 45047388 45047980 592 True 274.00 274 76.151000 7928 8501 1 chr5D.!!$R1 573
9 TraesCS4D01G131300 chr3B 405944046 405944654 608 True 265.00 265 75.602000 7913 8501 1 chr3B.!!$R1 588
10 TraesCS4D01G131300 chr2B 153119450 153120058 608 False 265.00 265 75.602000 7913 8501 1 chr2B.!!$F1 588
11 TraesCS4D01G131300 chr1D 376999432 377000077 645 True 263.00 263 75.076000 7879 8501 1 chr1D.!!$R3 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 821 0.604073 CACATGTGGCAAGCAATCCA 59.396 50.000 18.51 0.0 0.0 3.41 F
1559 1617 0.250553 TTCCCAACCAAAGATCGCGT 60.251 50.000 5.77 0.0 0.0 6.01 F
2175 2261 0.317020 GCATATTTTGAGGTCGCCGC 60.317 55.000 0.00 0.0 0.0 6.53 F
2550 2641 0.796312 ATGTCACGTGGTTTCGCATC 59.204 50.000 17.00 0.0 0.0 3.91 F
3715 4099 1.410153 CACAGCCTGCCTTTTTGAGTT 59.590 47.619 0.00 0.0 0.0 3.01 F
5843 6650 1.102978 GGTTTATCCGCAGCCATGTT 58.897 50.000 0.00 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 2457 0.036388 ATGGCAGACGGTTACACCTG 60.036 55.000 0.00 0.00 35.66 4.00 R
2371 2458 0.690762 AATGGCAGACGGTTACACCT 59.309 50.000 0.00 0.00 35.66 4.00 R
3808 4192 0.036388 CTAGCACCATCACGTTGGGT 60.036 55.000 10.92 4.09 41.35 4.51 R
4749 5135 8.570068 TTGTTGATTATAACAAACTACTCCCC 57.430 34.615 11.42 0.00 44.84 4.81 R
5900 7299 0.690192 TGTGGAAGGGAAGCGATTCA 59.310 50.000 16.24 0.00 0.00 2.57 R
8008 11494 0.523072 CTGCCGCTTGTGTTGCTTAT 59.477 50.000 0.00 0.00 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.664851 TTTCTGACACGCCTGCCG 60.665 61.111 0.00 0.00 44.21 5.69
87 88 1.892862 CTCCGTAGATCGCTCCCGT 60.893 63.158 0.00 0.00 38.35 5.28
121 122 1.991230 CTCCCACGTCCATCCCTTT 59.009 57.895 0.00 0.00 0.00 3.11
240 243 1.288752 CCAAACCATCAACACGGCC 59.711 57.895 0.00 0.00 0.00 6.13
350 354 3.075005 GGACCTCCTGCCTGCGTA 61.075 66.667 0.00 0.00 0.00 4.42
452 461 5.163353 TGCGACCTATCATCCATAGAAACAA 60.163 40.000 0.00 0.00 37.27 2.83
592 601 2.060980 AAGAATCGGCGAGCCTCCT 61.061 57.895 17.22 4.66 0.00 3.69
613 622 2.285743 GGCCCAGAGACCTCCCTT 60.286 66.667 0.00 0.00 0.00 3.95
662 671 1.040646 GTCAGGGAGTATCATCGGCA 58.959 55.000 0.00 0.00 36.25 5.69
667 676 3.259374 CAGGGAGTATCATCGGCAGTAAT 59.741 47.826 0.00 0.00 36.25 1.89
787 796 9.019764 ACTTCATAAAACTTGTCAATTTTGTCG 57.980 29.630 2.02 0.00 30.80 4.35
788 797 7.388290 TCATAAAACTTGTCAATTTTGTCGC 57.612 32.000 2.02 0.00 30.80 5.19
789 798 6.975197 TCATAAAACTTGTCAATTTTGTCGCA 59.025 30.769 2.02 0.00 30.80 5.10
790 799 7.651304 TCATAAAACTTGTCAATTTTGTCGCAT 59.349 29.630 2.02 0.00 30.80 4.73
791 800 8.910666 CATAAAACTTGTCAATTTTGTCGCATA 58.089 29.630 2.02 0.00 30.80 3.14
792 801 7.763172 AAAACTTGTCAATTTTGTCGCATAA 57.237 28.000 2.02 0.00 0.00 1.90
793 802 6.747659 AACTTGTCAATTTTGTCGCATAAC 57.252 33.333 0.00 0.00 0.00 1.89
794 803 5.826586 ACTTGTCAATTTTGTCGCATAACA 58.173 33.333 0.00 0.00 0.00 2.41
795 804 5.685511 ACTTGTCAATTTTGTCGCATAACAC 59.314 36.000 0.00 0.00 0.00 3.32
796 805 5.175090 TGTCAATTTTGTCGCATAACACA 57.825 34.783 0.00 0.00 0.00 3.72
797 806 5.767269 TGTCAATTTTGTCGCATAACACAT 58.233 33.333 0.00 0.00 0.00 3.21
798 807 5.628606 TGTCAATTTTGTCGCATAACACATG 59.371 36.000 0.00 0.00 0.00 3.21
799 808 5.629020 GTCAATTTTGTCGCATAACACATGT 59.371 36.000 0.00 0.00 0.00 3.21
800 809 5.628606 TCAATTTTGTCGCATAACACATGTG 59.371 36.000 24.25 24.25 0.00 3.21
801 810 3.550950 TTTGTCGCATAACACATGTGG 57.449 42.857 28.64 12.62 34.19 4.17
802 811 0.801872 TGTCGCATAACACATGTGGC 59.198 50.000 28.64 20.29 34.98 5.01
803 812 0.801872 GTCGCATAACACATGTGGCA 59.198 50.000 28.64 16.41 34.58 4.92
804 813 1.198867 GTCGCATAACACATGTGGCAA 59.801 47.619 28.64 14.25 34.58 4.52
805 814 1.468127 TCGCATAACACATGTGGCAAG 59.532 47.619 28.64 16.54 34.19 4.01
806 815 1.632422 GCATAACACATGTGGCAAGC 58.368 50.000 28.64 21.62 34.19 4.01
807 816 1.067706 GCATAACACATGTGGCAAGCA 60.068 47.619 28.64 8.07 34.19 3.91
808 817 2.609984 GCATAACACATGTGGCAAGCAA 60.610 45.455 28.64 7.06 34.19 3.91
809 818 3.852286 CATAACACATGTGGCAAGCAAT 58.148 40.909 28.64 8.91 34.19 3.56
810 819 2.443887 AACACATGTGGCAAGCAATC 57.556 45.000 28.64 0.00 34.19 2.67
811 820 0.604578 ACACATGTGGCAAGCAATCC 59.395 50.000 28.64 0.00 34.19 3.01
812 821 0.604073 CACATGTGGCAAGCAATCCA 59.396 50.000 18.51 0.00 0.00 3.41
813 822 1.001068 CACATGTGGCAAGCAATCCAA 59.999 47.619 18.51 0.00 33.57 3.53
814 823 1.693062 ACATGTGGCAAGCAATCCAAA 59.307 42.857 0.00 0.00 33.57 3.28
815 824 2.303600 ACATGTGGCAAGCAATCCAAAT 59.696 40.909 0.00 0.00 33.57 2.32
816 825 3.514706 ACATGTGGCAAGCAATCCAAATA 59.485 39.130 0.00 0.00 33.57 1.40
817 826 4.020396 ACATGTGGCAAGCAATCCAAATAA 60.020 37.500 0.00 0.00 33.57 1.40
818 827 4.822685 TGTGGCAAGCAATCCAAATAAT 57.177 36.364 0.00 0.00 33.57 1.28
819 828 5.163281 TGTGGCAAGCAATCCAAATAATT 57.837 34.783 0.00 0.00 33.57 1.40
820 829 5.177326 TGTGGCAAGCAATCCAAATAATTC 58.823 37.500 0.00 0.00 33.57 2.17
874 883 7.546667 ACATGTGATAAGCAATCCAAACAATTC 59.453 33.333 0.00 0.00 33.22 2.17
1428 1486 4.041917 CTGTGCATTTGCGGGCGT 62.042 61.111 0.00 0.00 45.83 5.68
1459 1517 1.079057 GTTGAGCGGAAGGAGGGAC 60.079 63.158 0.00 0.00 0.00 4.46
1510 1568 4.115199 GCCTCCCCCTCGCATGTT 62.115 66.667 0.00 0.00 0.00 2.71
1511 1569 2.677228 CCTCCCCCTCGCATGTTT 59.323 61.111 0.00 0.00 0.00 2.83
1512 1570 1.000896 CCTCCCCCTCGCATGTTTT 60.001 57.895 0.00 0.00 0.00 2.43
1513 1571 0.611896 CCTCCCCCTCGCATGTTTTT 60.612 55.000 0.00 0.00 0.00 1.94
1546 1604 4.919770 CCCCCTCTCTCTTCCCAA 57.080 61.111 0.00 0.00 0.00 4.12
1547 1605 2.302019 CCCCCTCTCTCTTCCCAAC 58.698 63.158 0.00 0.00 0.00 3.77
1548 1606 1.275421 CCCCCTCTCTCTTCCCAACC 61.275 65.000 0.00 0.00 0.00 3.77
1549 1607 0.547712 CCCCTCTCTCTTCCCAACCA 60.548 60.000 0.00 0.00 0.00 3.67
1550 1608 1.362224 CCCTCTCTCTTCCCAACCAA 58.638 55.000 0.00 0.00 0.00 3.67
1551 1609 1.705186 CCCTCTCTCTTCCCAACCAAA 59.295 52.381 0.00 0.00 0.00 3.28
1552 1610 2.290577 CCCTCTCTCTTCCCAACCAAAG 60.291 54.545 0.00 0.00 0.00 2.77
1553 1611 2.639839 CCTCTCTCTTCCCAACCAAAGA 59.360 50.000 0.00 0.00 0.00 2.52
1554 1612 3.265479 CCTCTCTCTTCCCAACCAAAGAT 59.735 47.826 0.00 0.00 31.45 2.40
1555 1613 4.512484 CTCTCTCTTCCCAACCAAAGATC 58.488 47.826 0.00 0.00 31.45 2.75
1556 1614 3.055819 TCTCTCTTCCCAACCAAAGATCG 60.056 47.826 0.00 0.00 31.45 3.69
1557 1615 1.740025 CTCTTCCCAACCAAAGATCGC 59.260 52.381 0.00 0.00 31.45 4.58
1558 1616 0.447801 CTTCCCAACCAAAGATCGCG 59.552 55.000 0.00 0.00 0.00 5.87
1559 1617 0.250553 TTCCCAACCAAAGATCGCGT 60.251 50.000 5.77 0.00 0.00 6.01
1560 1618 0.672401 TCCCAACCAAAGATCGCGTC 60.672 55.000 5.77 2.98 0.00 5.19
1561 1619 1.644786 CCCAACCAAAGATCGCGTCC 61.645 60.000 5.77 0.00 0.00 4.79
1562 1620 0.673644 CCAACCAAAGATCGCGTCCT 60.674 55.000 5.77 0.94 0.00 3.85
1563 1621 0.443869 CAACCAAAGATCGCGTCCTG 59.556 55.000 5.77 4.01 0.00 3.86
1595 1653 6.090898 CGTCTTTCACCAGTTTCTGTATAAGG 59.909 42.308 0.00 0.00 0.00 2.69
1597 1655 6.271391 TCTTTCACCAGTTTCTGTATAAGGGA 59.729 38.462 0.00 0.00 0.00 4.20
1598 1656 6.442541 TTCACCAGTTTCTGTATAAGGGAA 57.557 37.500 0.00 0.00 0.00 3.97
1626 1701 2.441532 TACTCTCGGAAGGCGGGG 60.442 66.667 0.00 0.00 0.00 5.73
1640 1715 1.617533 GGCGGGGGTTAATTTCTTGGA 60.618 52.381 0.00 0.00 0.00 3.53
1641 1716 1.749063 GCGGGGGTTAATTTCTTGGAG 59.251 52.381 0.00 0.00 0.00 3.86
1642 1717 2.882643 GCGGGGGTTAATTTCTTGGAGT 60.883 50.000 0.00 0.00 0.00 3.85
1643 1718 3.427573 CGGGGGTTAATTTCTTGGAGTT 58.572 45.455 0.00 0.00 0.00 3.01
1644 1719 3.830178 CGGGGGTTAATTTCTTGGAGTTT 59.170 43.478 0.00 0.00 0.00 2.66
1645 1720 4.282449 CGGGGGTTAATTTCTTGGAGTTTT 59.718 41.667 0.00 0.00 0.00 2.43
1667 1742 2.099098 AGTTTTCTGTTTTGGAGTGCGG 59.901 45.455 0.00 0.00 0.00 5.69
1668 1743 2.045561 TTTCTGTTTTGGAGTGCGGA 57.954 45.000 0.00 0.00 0.00 5.54
1669 1744 1.593196 TTCTGTTTTGGAGTGCGGAG 58.407 50.000 0.00 0.00 0.00 4.63
1670 1745 0.756294 TCTGTTTTGGAGTGCGGAGA 59.244 50.000 0.00 0.00 0.00 3.71
1671 1746 1.151668 CTGTTTTGGAGTGCGGAGAG 58.848 55.000 0.00 0.00 0.00 3.20
1704 1779 4.849518 TGGATTGACGATGTTGGGATTAA 58.150 39.130 0.00 0.00 0.00 1.40
1714 1789 2.252714 GTTGGGATTAAGGGTGGCAAA 58.747 47.619 0.00 0.00 0.00 3.68
1715 1790 2.635427 GTTGGGATTAAGGGTGGCAAAA 59.365 45.455 0.00 0.00 0.00 2.44
1716 1791 2.977808 TGGGATTAAGGGTGGCAAAAA 58.022 42.857 0.00 0.00 0.00 1.94
1818 1903 7.786178 AAAAAGGGTTGTTTTAATCTTGAGC 57.214 32.000 0.00 0.00 0.00 4.26
1819 1904 5.468540 AAGGGTTGTTTTAATCTTGAGCC 57.531 39.130 0.00 0.00 0.00 4.70
1869 1954 0.967380 AGCCATCGCTTTTTGGGGAG 60.967 55.000 0.00 0.00 45.55 4.30
1890 1975 4.526970 AGACTGGGTGCGATTTTTGATAT 58.473 39.130 0.00 0.00 0.00 1.63
1897 1982 4.206843 GTGCGATTTTTGATATCTGCTCG 58.793 43.478 3.98 6.79 0.00 5.03
2018 2104 7.970384 TGTGCTAACTATTTTGGAAATACGAG 58.030 34.615 0.00 0.00 0.00 4.18
2019 2105 7.820386 TGTGCTAACTATTTTGGAAATACGAGA 59.180 33.333 0.00 0.00 0.00 4.04
2020 2106 8.827677 GTGCTAACTATTTTGGAAATACGAGAT 58.172 33.333 0.00 0.00 0.00 2.75
2021 2107 9.391006 TGCTAACTATTTTGGAAATACGAGATT 57.609 29.630 0.00 0.00 0.00 2.40
2029 2115 7.972832 TTTGGAAATACGAGATTACAACACT 57.027 32.000 0.00 0.00 0.00 3.55
2030 2116 6.961359 TGGAAATACGAGATTACAACACTG 57.039 37.500 0.00 0.00 0.00 3.66
2031 2117 6.693466 TGGAAATACGAGATTACAACACTGA 58.307 36.000 0.00 0.00 0.00 3.41
2032 2118 7.156000 TGGAAATACGAGATTACAACACTGAA 58.844 34.615 0.00 0.00 0.00 3.02
2033 2119 7.658167 TGGAAATACGAGATTACAACACTGAAA 59.342 33.333 0.00 0.00 0.00 2.69
2034 2120 8.500773 GGAAATACGAGATTACAACACTGAAAA 58.499 33.333 0.00 0.00 0.00 2.29
2035 2121 9.872757 GAAATACGAGATTACAACACTGAAAAA 57.127 29.630 0.00 0.00 0.00 1.94
2064 2150 3.132629 GCTATAGCGTCGCTAATAGCA 57.867 47.619 34.13 19.54 44.62 3.49
2065 2151 2.847133 GCTATAGCGTCGCTAATAGCAC 59.153 50.000 34.13 20.55 44.62 4.40
2066 2152 1.965083 ATAGCGTCGCTAATAGCACG 58.035 50.000 29.13 22.97 44.62 5.34
2068 2154 4.303853 CGTCGCTAATAGCACGCT 57.696 55.556 18.51 0.00 42.58 5.07
2069 2155 3.449789 CGTCGCTAATAGCACGCTA 57.550 52.632 18.51 0.39 42.58 4.26
2070 2156 1.965083 CGTCGCTAATAGCACGCTAT 58.035 50.000 18.51 5.72 42.58 2.97
2071 2157 3.113325 CGTCGCTAATAGCACGCTATA 57.887 47.619 18.51 1.16 42.58 1.31
2072 2158 3.092135 CGTCGCTAATAGCACGCTATAG 58.908 50.000 18.51 10.32 42.58 1.31
2073 2159 3.424565 CGTCGCTAATAGCACGCTATAGT 60.425 47.826 18.51 0.68 42.58 2.12
2074 2160 3.846896 GTCGCTAATAGCACGCTATAGTG 59.153 47.826 13.15 11.80 42.58 2.74
2075 2161 3.501062 TCGCTAATAGCACGCTATAGTGT 59.499 43.478 13.24 13.24 42.58 3.55
2076 2162 4.692155 TCGCTAATAGCACGCTATAGTGTA 59.308 41.667 18.25 4.30 42.58 2.90
2077 2163 5.353400 TCGCTAATAGCACGCTATAGTGTAT 59.647 40.000 18.25 12.47 42.58 2.29
2078 2164 6.028368 CGCTAATAGCACGCTATAGTGTATT 58.972 40.000 18.25 15.92 42.58 1.89
2079 2165 6.021390 CGCTAATAGCACGCTATAGTGTATTG 60.021 42.308 18.25 8.15 42.58 1.90
2080 2166 7.027760 GCTAATAGCACGCTATAGTGTATTGA 58.972 38.462 18.25 5.47 43.61 2.57
2081 2167 7.219154 GCTAATAGCACGCTATAGTGTATTGAG 59.781 40.741 18.25 11.68 43.61 3.02
2082 2168 6.819397 ATAGCACGCTATAGTGTATTGAGA 57.181 37.500 18.25 2.54 43.61 3.27
2083 2169 5.515797 AGCACGCTATAGTGTATTGAGAA 57.484 39.130 18.25 0.00 43.61 2.87
2084 2170 6.090483 AGCACGCTATAGTGTATTGAGAAT 57.910 37.500 18.25 0.00 43.61 2.40
2085 2171 6.516718 AGCACGCTATAGTGTATTGAGAATT 58.483 36.000 18.25 0.00 43.61 2.17
2086 2172 6.422100 AGCACGCTATAGTGTATTGAGAATTG 59.578 38.462 18.25 4.07 43.61 2.32
2087 2173 6.201044 GCACGCTATAGTGTATTGAGAATTGT 59.799 38.462 18.25 0.00 43.61 2.71
2088 2174 7.567771 GCACGCTATAGTGTATTGAGAATTGTC 60.568 40.741 18.25 0.00 43.61 3.18
2089 2175 7.649705 CACGCTATAGTGTATTGAGAATTGTCT 59.350 37.037 18.25 0.00 36.94 3.41
2090 2176 7.863375 ACGCTATAGTGTATTGAGAATTGTCTC 59.137 37.037 17.27 0.00 42.73 3.36
2104 2190 8.897457 GAGAATTGTCTCGCTAAATATATCGA 57.103 34.615 0.00 0.00 41.02 3.59
2105 2191 9.509855 GAGAATTGTCTCGCTAAATATATCGAT 57.490 33.333 2.16 2.16 41.02 3.59
2106 2192 9.295214 AGAATTGTCTCGCTAAATATATCGATG 57.705 33.333 8.54 0.00 30.17 3.84
2107 2193 8.988064 AATTGTCTCGCTAAATATATCGATGT 57.012 30.769 8.54 3.54 30.17 3.06
2109 2195 8.891367 TTGTCTCGCTAAATATATCGATGTAC 57.109 34.615 8.54 0.00 30.17 2.90
2110 2196 8.036273 TGTCTCGCTAAATATATCGATGTACA 57.964 34.615 8.54 0.00 30.17 2.90
2111 2197 8.508875 TGTCTCGCTAAATATATCGATGTACAA 58.491 33.333 8.54 0.00 30.17 2.41
2112 2198 9.504710 GTCTCGCTAAATATATCGATGTACAAT 57.495 33.333 8.54 0.00 30.17 2.71
2113 2199 9.503427 TCTCGCTAAATATATCGATGTACAATG 57.497 33.333 8.54 0.00 30.17 2.82
2114 2200 9.290483 CTCGCTAAATATATCGATGTACAATGT 57.710 33.333 8.54 0.00 30.17 2.71
2115 2201 9.285770 TCGCTAAATATATCGATGTACAATGTC 57.714 33.333 8.54 0.00 0.00 3.06
2116 2202 9.290483 CGCTAAATATATCGATGTACAATGTCT 57.710 33.333 8.54 0.00 0.00 3.41
2119 2205 7.742019 AATATATCGATGTACAATGTCTCGC 57.258 36.000 8.54 0.00 0.00 5.03
2120 2206 3.717400 ATCGATGTACAATGTCTCGCT 57.283 42.857 10.26 0.00 0.00 4.93
2121 2207 4.830826 ATCGATGTACAATGTCTCGCTA 57.169 40.909 10.26 0.00 0.00 4.26
2122 2208 4.625972 TCGATGTACAATGTCTCGCTAA 57.374 40.909 10.26 0.00 0.00 3.09
2123 2209 5.183014 TCGATGTACAATGTCTCGCTAAT 57.817 39.130 10.26 0.00 0.00 1.73
2124 2210 6.308371 TCGATGTACAATGTCTCGCTAATA 57.692 37.500 10.26 0.00 0.00 0.98
2125 2211 6.371389 TCGATGTACAATGTCTCGCTAATAG 58.629 40.000 10.26 0.00 0.00 1.73
2126 2212 5.059832 CGATGTACAATGTCTCGCTAATAGC 59.940 44.000 0.00 1.41 38.02 2.97
2127 2213 5.257082 TGTACAATGTCTCGCTAATAGCA 57.743 39.130 13.15 0.00 42.58 3.49
2128 2214 5.041287 TGTACAATGTCTCGCTAATAGCAC 58.959 41.667 13.15 3.79 42.58 4.40
2129 2215 3.116300 ACAATGTCTCGCTAATAGCACG 58.884 45.455 13.15 2.42 42.58 5.34
2130 2216 1.772182 ATGTCTCGCTAATAGCACGC 58.228 50.000 13.15 0.19 42.58 5.34
2131 2217 0.738975 TGTCTCGCTAATAGCACGCT 59.261 50.000 13.15 0.00 42.58 5.07
2132 2218 1.944709 TGTCTCGCTAATAGCACGCTA 59.055 47.619 13.15 0.39 42.58 4.26
2133 2219 2.552743 TGTCTCGCTAATAGCACGCTAT 59.447 45.455 13.15 5.72 42.58 2.97
2134 2220 3.749609 TGTCTCGCTAATAGCACGCTATA 59.250 43.478 13.15 1.16 42.58 1.31
2135 2221 4.142881 TGTCTCGCTAATAGCACGCTATAG 60.143 45.833 13.15 10.32 42.58 1.31
2136 2222 3.102276 CTCGCTAATAGCACGCTATAGC 58.898 50.000 15.09 15.09 42.58 2.97
2168 2254 6.545504 ACACGCTAATAGCATATTTTGAGG 57.454 37.500 13.15 0.00 42.58 3.86
2169 2255 6.055588 ACACGCTAATAGCATATTTTGAGGT 58.944 36.000 13.15 0.00 42.58 3.85
2170 2256 6.202954 ACACGCTAATAGCATATTTTGAGGTC 59.797 38.462 13.15 0.00 42.58 3.85
2171 2257 5.405571 ACGCTAATAGCATATTTTGAGGTCG 59.594 40.000 13.15 0.00 42.58 4.79
2172 2258 5.622378 GCTAATAGCATATTTTGAGGTCGC 58.378 41.667 7.49 0.00 41.89 5.19
2173 2259 5.390991 GCTAATAGCATATTTTGAGGTCGCC 60.391 44.000 7.49 0.00 41.89 5.54
2174 2260 1.299541 AGCATATTTTGAGGTCGCCG 58.700 50.000 0.00 0.00 0.00 6.46
2175 2261 0.317020 GCATATTTTGAGGTCGCCGC 60.317 55.000 0.00 0.00 0.00 6.53
2176 2262 1.299541 CATATTTTGAGGTCGCCGCT 58.700 50.000 1.93 0.00 0.00 5.52
2177 2263 2.479837 CATATTTTGAGGTCGCCGCTA 58.520 47.619 1.93 0.00 0.00 4.26
2178 2264 2.902705 TATTTTGAGGTCGCCGCTAT 57.097 45.000 1.93 0.00 0.00 2.97
2179 2265 2.038387 ATTTTGAGGTCGCCGCTATT 57.962 45.000 1.93 0.00 0.00 1.73
2180 2266 1.816074 TTTTGAGGTCGCCGCTATTT 58.184 45.000 1.93 0.00 0.00 1.40
2181 2267 1.816074 TTTGAGGTCGCCGCTATTTT 58.184 45.000 1.93 0.00 0.00 1.82
2182 2268 2.676632 TTGAGGTCGCCGCTATTTTA 57.323 45.000 1.93 0.00 0.00 1.52
2183 2269 1.930567 TGAGGTCGCCGCTATTTTAC 58.069 50.000 1.93 0.00 0.00 2.01
2184 2270 1.479323 TGAGGTCGCCGCTATTTTACT 59.521 47.619 1.93 0.00 0.00 2.24
2185 2271 1.859080 GAGGTCGCCGCTATTTTACTG 59.141 52.381 0.00 0.00 0.00 2.74
2186 2272 1.206371 AGGTCGCCGCTATTTTACTGT 59.794 47.619 0.00 0.00 0.00 3.55
2187 2273 2.428171 AGGTCGCCGCTATTTTACTGTA 59.572 45.455 0.00 0.00 0.00 2.74
2188 2274 2.793232 GGTCGCCGCTATTTTACTGTAG 59.207 50.000 0.00 0.00 0.00 2.74
2189 2275 2.218075 GTCGCCGCTATTTTACTGTAGC 59.782 50.000 0.00 0.00 39.86 3.58
2193 2279 2.280764 GCTATTTTACTGTAGCGCGC 57.719 50.000 26.66 26.66 34.60 6.86
2194 2280 1.859080 GCTATTTTACTGTAGCGCGCT 59.141 47.619 38.01 38.01 34.60 5.92
2195 2281 3.047796 GCTATTTTACTGTAGCGCGCTA 58.952 45.455 35.48 35.48 34.60 4.26
2196 2282 3.673809 GCTATTTTACTGTAGCGCGCTAT 59.326 43.478 39.99 27.76 34.60 2.97
2197 2283 4.150098 GCTATTTTACTGTAGCGCGCTATT 59.850 41.667 39.99 28.56 34.60 1.73
2198 2284 5.333111 GCTATTTTACTGTAGCGCGCTATTT 60.333 40.000 39.99 28.23 34.60 1.40
2199 2285 4.932268 TTTTACTGTAGCGCGCTATTTT 57.068 36.364 39.99 27.91 0.00 1.82
2200 2286 4.932268 TTTACTGTAGCGCGCTATTTTT 57.068 36.364 39.99 26.31 0.00 1.94
2294 2380 9.498176 GTAGATTAGTTCTAGGTTTTGGTTTGA 57.502 33.333 0.00 0.00 37.62 2.69
2336 2423 6.449635 TGTACTGAAAGCAATGTCAAACTT 57.550 33.333 0.00 0.00 37.60 2.66
2349 2436 7.566709 CAATGTCAAACTTTAGCAAATGGTTC 58.433 34.615 0.00 0.00 0.00 3.62
2368 2455 1.346395 TCGTGTGTTTAGCCATCCAGT 59.654 47.619 0.00 0.00 0.00 4.00
2369 2456 1.732259 CGTGTGTTTAGCCATCCAGTC 59.268 52.381 0.00 0.00 0.00 3.51
2370 2457 2.084546 GTGTGTTTAGCCATCCAGTCC 58.915 52.381 0.00 0.00 0.00 3.85
2371 2458 1.702401 TGTGTTTAGCCATCCAGTCCA 59.298 47.619 0.00 0.00 0.00 4.02
2372 2459 2.290260 TGTGTTTAGCCATCCAGTCCAG 60.290 50.000 0.00 0.00 0.00 3.86
2400 2487 3.134623 ACCGTCTGCCATTCTCATATGAA 59.865 43.478 6.90 0.00 0.00 2.57
2508 2595 4.796038 AGCTGGAATTGGTGAAATCTTG 57.204 40.909 0.00 0.00 0.00 3.02
2534 2625 7.959658 TGAATTGATTCAAGACCCATTATGT 57.040 32.000 5.21 0.00 43.26 2.29
2546 2637 2.095213 CCCATTATGTCACGTGGTTTCG 59.905 50.000 17.00 0.00 0.00 3.46
2550 2641 0.796312 ATGTCACGTGGTTTCGCATC 59.204 50.000 17.00 0.00 0.00 3.91
2664 2755 7.872483 GTGTATCAAATGTGGATTGGAACTTTT 59.128 33.333 0.00 0.00 0.00 2.27
2670 2761 7.552458 AATGTGGATTGGAACTTTTTGAAAC 57.448 32.000 0.00 0.00 0.00 2.78
2709 2800 4.561213 TGTTAACGCTGTCGACATAATCAG 59.439 41.667 20.40 7.31 39.41 2.90
2741 2832 3.443099 TCTCATTAGACGTCCATGCAG 57.557 47.619 13.01 13.13 0.00 4.41
2777 2868 4.759516 AAGGTTAATGTGTGTAAAGCCG 57.240 40.909 0.00 0.00 0.00 5.52
2969 3060 7.232737 TGTTCAGTCTGTAAGGTTGAGAATCTA 59.767 37.037 0.00 0.00 34.92 1.98
2970 3061 7.159322 TCAGTCTGTAAGGTTGAGAATCTAC 57.841 40.000 0.00 0.00 40.18 2.59
2971 3062 6.948886 TCAGTCTGTAAGGTTGAGAATCTACT 59.051 38.462 0.00 0.00 40.73 2.57
2972 3063 8.107729 TCAGTCTGTAAGGTTGAGAATCTACTA 58.892 37.037 0.00 0.00 40.73 1.82
2973 3064 8.402472 CAGTCTGTAAGGTTGAGAATCTACTAG 58.598 40.741 0.00 0.00 40.73 2.57
2974 3065 8.110908 AGTCTGTAAGGTTGAGAATCTACTAGT 58.889 37.037 0.00 0.00 40.73 2.57
2975 3066 8.185505 GTCTGTAAGGTTGAGAATCTACTAGTG 58.814 40.741 5.39 0.00 40.73 2.74
2976 3067 7.889073 TCTGTAAGGTTGAGAATCTACTAGTGT 59.111 37.037 5.39 0.00 40.73 3.55
2977 3068 8.053026 TGTAAGGTTGAGAATCTACTAGTGTC 57.947 38.462 5.39 0.00 40.73 3.67
2979 3070 7.540474 AAGGTTGAGAATCTACTAGTGTCAA 57.460 36.000 5.39 2.57 40.73 3.18
2980 3071 7.540474 AGGTTGAGAATCTACTAGTGTCAAA 57.460 36.000 5.39 0.00 40.73 2.69
2981 3072 7.963532 AGGTTGAGAATCTACTAGTGTCAAAA 58.036 34.615 5.39 0.00 40.73 2.44
2982 3073 8.429641 AGGTTGAGAATCTACTAGTGTCAAAAA 58.570 33.333 5.39 0.00 40.73 1.94
2983 3074 8.496751 GGTTGAGAATCTACTAGTGTCAAAAAC 58.503 37.037 5.39 1.24 40.73 2.43
2984 3075 7.869016 TGAGAATCTACTAGTGTCAAAAACG 57.131 36.000 5.39 0.00 34.92 3.60
2985 3076 6.365247 TGAGAATCTACTAGTGTCAAAAACGC 59.635 38.462 5.39 0.00 35.59 4.84
2986 3077 7.737343 TGAGAATCTACTAGTGTCAAAAACGCT 60.737 37.037 5.39 0.00 43.59 5.07
2987 3078 6.929606 AGAATCTACTAGTGTCAAAAACGCTT 59.070 34.615 5.39 0.00 46.62 4.68
2988 3079 8.086522 AGAATCTACTAGTGTCAAAAACGCTTA 58.913 33.333 5.39 0.00 46.62 3.09
2989 3080 8.773404 AATCTACTAGTGTCAAAAACGCTTAT 57.227 30.769 5.39 0.00 46.62 1.73
2990 3081 9.865321 AATCTACTAGTGTCAAAAACGCTTATA 57.135 29.630 5.39 0.00 46.62 0.98
2992 3083 9.865321 TCTACTAGTGTCAAAAACGCTTATATT 57.135 29.630 5.39 0.00 46.62 1.28
2996 3087 9.864034 CTAGTGTCAAAAACGCTTATATTATGG 57.136 33.333 0.00 0.00 46.62 2.74
2997 3088 7.703328 AGTGTCAAAAACGCTTATATTATGGG 58.297 34.615 0.00 0.00 46.62 4.00
2998 3089 7.554835 AGTGTCAAAAACGCTTATATTATGGGA 59.445 33.333 0.00 0.00 46.62 4.37
2999 3090 7.642586 GTGTCAAAAACGCTTATATTATGGGAC 59.357 37.037 0.00 0.00 35.42 4.46
3000 3091 6.849305 GTCAAAAACGCTTATATTATGGGACG 59.151 38.462 0.00 0.00 0.00 4.79
3001 3092 5.934935 AAAACGCTTATATTATGGGACGG 57.065 39.130 0.00 0.00 0.00 4.79
3002 3093 4.877378 AACGCTTATATTATGGGACGGA 57.123 40.909 0.00 0.00 0.00 4.69
3003 3094 4.451629 ACGCTTATATTATGGGACGGAG 57.548 45.455 0.00 0.00 0.00 4.63
3004 3095 3.194968 ACGCTTATATTATGGGACGGAGG 59.805 47.826 0.00 0.00 0.00 4.30
3005 3096 3.430374 CGCTTATATTATGGGACGGAGGG 60.430 52.174 0.00 0.00 0.00 4.30
3006 3097 3.773119 GCTTATATTATGGGACGGAGGGA 59.227 47.826 0.00 0.00 0.00 4.20
3007 3098 4.141914 GCTTATATTATGGGACGGAGGGAG 60.142 50.000 0.00 0.00 0.00 4.30
3008 3099 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3009 3100 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3010 3101 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
3056 3147 7.309499 GGGATACTTCAGATATCTGTGGTGTAG 60.309 44.444 27.80 18.44 44.12 2.74
3389 3767 3.879892 AGAAACTTGTTGCAAGAGAGGAC 59.120 43.478 14.81 0.00 0.00 3.85
3528 3907 4.880759 TCCATTTGTGTGCCATTTAGTTG 58.119 39.130 0.00 0.00 0.00 3.16
3540 3919 4.795278 GCCATTTAGTTGCATTCTCTTTCG 59.205 41.667 0.00 0.00 0.00 3.46
3686 4070 6.485648 TCTTATTGCATGGAATCTGATGTCAG 59.514 38.462 16.40 3.61 45.08 3.51
3715 4099 1.410153 CACAGCCTGCCTTTTTGAGTT 59.590 47.619 0.00 0.00 0.00 3.01
3737 4121 6.706270 AGTTATCATGAACCCGACAATCATAC 59.294 38.462 0.00 0.00 32.73 2.39
3742 4126 2.579207 ACCCGACAATCATACGACTG 57.421 50.000 0.00 0.00 0.00 3.51
3808 4192 7.816031 GTGCTACAACTCCAGTAAATGTTACTA 59.184 37.037 0.51 0.00 0.00 1.82
4627 5011 7.954666 AGAGGAGTAGATAATTAGAGATGGC 57.045 40.000 0.00 0.00 0.00 4.40
4749 5135 1.735571 CGACACTTATTTTGGGACGGG 59.264 52.381 0.00 0.00 0.00 5.28
4847 5233 6.202188 GGAACATTGGTATGTAACGACTATGG 59.798 42.308 0.00 0.00 44.14 2.74
4906 5292 8.410673 ACTCTTCTACTGTTTAACATCTCTCA 57.589 34.615 0.00 0.00 0.00 3.27
4911 5297 5.153950 ACTGTTTAACATCTCTCACTCCC 57.846 43.478 0.00 0.00 0.00 4.30
4933 5319 2.376808 ATGTGAGCTGTGCTAGTGTC 57.623 50.000 0.00 0.00 39.88 3.67
5149 5547 4.058817 GGGGTAACTTCTAATCTGCATCG 58.941 47.826 0.00 0.00 0.00 3.84
5843 6650 1.102978 GGTTTATCCGCAGCCATGTT 58.897 50.000 0.00 0.00 0.00 2.71
5900 7299 1.980772 GATTGCCTGCCAAGCCACT 60.981 57.895 0.00 0.00 36.76 4.00
6280 7680 5.067544 ACGAATTACTACTCTTCCTAGCACC 59.932 44.000 0.00 0.00 0.00 5.01
6335 7736 5.009210 TCCACAGTGCAAATTTACACTTACC 59.991 40.000 19.37 0.00 44.59 2.85
6371 7772 5.050490 CCAGATGGTTTAGGTCAGTAATCG 58.950 45.833 0.00 0.00 0.00 3.34
6681 8091 1.674764 CTGCAGTCGCTCAGGGATCT 61.675 60.000 5.25 0.00 39.64 2.75
6818 8231 2.381911 GTGCCATGAAGGACATTGGAT 58.618 47.619 0.00 0.00 41.22 3.41
6822 8235 3.005472 GCCATGAAGGACATTGGATCATG 59.995 47.826 0.00 7.00 44.31 3.07
6912 8325 1.135689 GCACGCACCGAGAAATGAATT 60.136 47.619 0.00 0.00 0.00 2.17
6999 8412 2.985809 GCTAGCGATCTACTTCTGCATG 59.014 50.000 0.00 0.00 0.00 4.06
7023 8436 0.466555 TTGGCTTAACCGTGGCTGTT 60.467 50.000 0.00 0.00 43.94 3.16
7118 8532 6.260700 AGGTTACTAATGCCCATTATGTGA 57.739 37.500 1.53 0.00 33.29 3.58
7125 8539 4.675976 ATGCCCATTATGTGATTGGTTG 57.324 40.909 0.00 0.00 0.00 3.77
7304 8738 8.921205 AGACCTTTTAGACACTTAAGTCAAGTA 58.079 33.333 4.77 0.00 46.04 2.24
7459 9014 3.009805 AGGGTGGTTACTAATGTTGTCCC 59.990 47.826 0.00 0.00 0.00 4.46
7556 9118 4.142600 GGTGTGGTGCTGTAAGATTCATTC 60.143 45.833 0.00 0.00 34.07 2.67
7617 9179 7.974675 AGAATGAAATACGGTGTGTCATTAAG 58.025 34.615 19.39 0.00 38.65 1.85
7635 9197 8.803235 GTCATTAAGAACTCCTTTTAAACCCAT 58.197 33.333 0.00 0.00 36.34 4.00
7735 11183 6.780457 AACCATCCAGGAAAAATGAGTATG 57.220 37.500 0.00 0.00 41.22 2.39
7736 11184 5.831103 ACCATCCAGGAAAAATGAGTATGT 58.169 37.500 0.00 0.00 41.22 2.29
7740 11188 8.355169 CCATCCAGGAAAAATGAGTATGTAATG 58.645 37.037 0.00 0.00 41.22 1.90
7814 11262 6.503560 AATTGGATGACTATTACCGGGTTA 57.496 37.500 4.31 0.00 0.00 2.85
7826 11310 8.931568 ACTATTACCGGGTTATAAAGATTGTCT 58.068 33.333 4.31 0.00 0.00 3.41
7833 11317 7.214381 CGGGTTATAAAGATTGTCTCATACCA 58.786 38.462 0.00 0.00 0.00 3.25
7925 11410 7.386573 TCACAAGACTTCGTTGCAAATTATCTA 59.613 33.333 0.00 0.00 0.00 1.98
7931 11417 9.374960 GACTTCGTTGCAAATTATCTATTCATC 57.625 33.333 0.00 0.00 0.00 2.92
7932 11418 9.113838 ACTTCGTTGCAAATTATCTATTCATCT 57.886 29.630 0.00 0.00 0.00 2.90
8008 11494 7.937649 TCGCTCTTCATATAAGCTGTAAGTAA 58.062 34.615 0.00 0.00 35.30 2.24
8226 11720 0.033504 TTTCAGTGGACTCGGTCTGC 59.966 55.000 4.41 0.00 32.47 4.26
8253 11747 6.600822 CCCTAGCATTGTTGGGATCATATAAG 59.399 42.308 4.42 0.00 42.11 1.73
8397 11919 6.881065 ATTGATAGCAAATGTAGTGTCACACT 59.119 34.615 16.42 16.42 41.69 3.55
8453 11976 5.175127 TGTTATTGATACGCAGAGCTTCAA 58.825 37.500 0.00 0.00 0.00 2.69
8493 12016 7.206789 TGTTATCATCCCTAGGTTTGAATGA 57.793 36.000 8.29 8.88 0.00 2.57
8502 12025 8.893563 TCCCTAGGTTTGAATGAATTTGTAAT 57.106 30.769 8.29 0.00 0.00 1.89
8544 12067 4.237018 TCCTACTTACAAGAACCCCACTT 58.763 43.478 0.00 0.00 0.00 3.16
8545 12068 4.041198 TCCTACTTACAAGAACCCCACTTG 59.959 45.833 0.00 0.00 46.69 3.16
8551 12074 2.162681 CAAGAACCCCACTTGCCTTAG 58.837 52.381 0.00 0.00 38.28 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 1.004277 CTCCACCGAAAAAGGGATGGA 59.996 52.381 0.00 0.00 35.04 3.41
121 122 1.289830 TCCTATCCCTCTCCACCGAAA 59.710 52.381 0.00 0.00 0.00 3.46
240 243 2.289320 CCTTCTCCTGTGACAAGTCCAG 60.289 54.545 10.06 10.06 0.00 3.86
361 365 2.692368 ATGGTGACCCCGAGCCAT 60.692 61.111 0.00 0.00 36.94 4.40
423 432 1.067416 GATGATAGGTCGCACGGCA 59.933 57.895 0.00 0.00 0.00 5.69
427 436 4.521130 TTCTATGGATGATAGGTCGCAC 57.479 45.455 0.00 0.00 35.57 5.34
564 573 0.659957 GCCGATTCTTGAGGATGTGC 59.340 55.000 0.00 0.00 0.00 4.57
592 601 2.043852 GAGGTCTCTGGGCCGAGA 60.044 66.667 17.38 17.38 37.69 4.04
613 622 2.927856 ACGGTGCCCACTCCATCA 60.928 61.111 0.00 0.00 0.00 3.07
662 671 1.276989 TCCGGCGGAACTTGAATTACT 59.723 47.619 29.11 0.00 0.00 2.24
667 676 0.251916 ATGATCCGGCGGAACTTGAA 59.748 50.000 34.58 14.70 34.34 2.69
776 785 5.628606 CACATGTGTTATGCGACAAAATTGA 59.371 36.000 18.03 0.00 0.00 2.57
777 786 5.164070 CCACATGTGTTATGCGACAAAATTG 60.164 40.000 23.79 0.00 0.00 2.32
778 787 4.922692 CCACATGTGTTATGCGACAAAATT 59.077 37.500 23.79 0.00 0.00 1.82
779 788 4.484236 CCACATGTGTTATGCGACAAAAT 58.516 39.130 23.79 0.00 0.00 1.82
780 789 3.855154 GCCACATGTGTTATGCGACAAAA 60.855 43.478 23.79 0.00 0.00 2.44
781 790 2.351253 GCCACATGTGTTATGCGACAAA 60.351 45.455 23.79 0.00 0.00 2.83
782 791 1.198867 GCCACATGTGTTATGCGACAA 59.801 47.619 23.79 0.00 0.00 3.18
783 792 0.801872 GCCACATGTGTTATGCGACA 59.198 50.000 23.79 0.00 0.00 4.35
784 793 0.801872 TGCCACATGTGTTATGCGAC 59.198 50.000 23.79 5.35 0.00 5.19
785 794 1.468127 CTTGCCACATGTGTTATGCGA 59.532 47.619 23.79 17.45 0.00 5.10
786 795 1.898938 CTTGCCACATGTGTTATGCG 58.101 50.000 23.79 8.95 0.00 4.73
787 796 1.067706 TGCTTGCCACATGTGTTATGC 60.068 47.619 23.79 22.00 0.00 3.14
788 797 3.300852 TTGCTTGCCACATGTGTTATG 57.699 42.857 23.79 14.47 0.00 1.90
789 798 3.119029 GGATTGCTTGCCACATGTGTTAT 60.119 43.478 23.79 6.66 0.00 1.89
790 799 2.230992 GGATTGCTTGCCACATGTGTTA 59.769 45.455 23.79 9.91 0.00 2.41
791 800 1.001181 GGATTGCTTGCCACATGTGTT 59.999 47.619 23.79 0.00 0.00 3.32
792 801 0.604578 GGATTGCTTGCCACATGTGT 59.395 50.000 23.79 2.96 0.00 3.72
793 802 0.604073 TGGATTGCTTGCCACATGTG 59.396 50.000 19.31 19.31 0.00 3.21
794 803 1.340088 TTGGATTGCTTGCCACATGT 58.660 45.000 0.00 0.00 33.01 3.21
795 804 2.459060 TTTGGATTGCTTGCCACATG 57.541 45.000 0.00 0.00 33.01 3.21
796 805 4.822685 TTATTTGGATTGCTTGCCACAT 57.177 36.364 0.00 0.00 33.01 3.21
797 806 4.822685 ATTATTTGGATTGCTTGCCACA 57.177 36.364 0.00 0.00 33.01 4.17
798 807 5.177326 TGAATTATTTGGATTGCTTGCCAC 58.823 37.500 0.00 0.00 33.01 5.01
799 808 5.417754 TGAATTATTTGGATTGCTTGCCA 57.582 34.783 0.00 0.00 0.00 4.92
800 809 6.740411 TTTGAATTATTTGGATTGCTTGCC 57.260 33.333 0.00 0.00 0.00 4.52
801 810 8.291740 AGTTTTTGAATTATTTGGATTGCTTGC 58.708 29.630 0.00 0.00 0.00 4.01
804 813 9.341078 ACAAGTTTTTGAATTATTTGGATTGCT 57.659 25.926 0.00 0.00 37.73 3.91
805 814 9.597999 GACAAGTTTTTGAATTATTTGGATTGC 57.402 29.630 0.00 0.00 37.73 3.56
816 825 9.824534 GTGACAAAATTGACAAGTTTTTGAATT 57.175 25.926 23.94 9.67 40.89 2.17
817 826 8.997323 TGTGACAAAATTGACAAGTTTTTGAAT 58.003 25.926 23.94 10.18 40.89 2.57
818 827 8.370493 TGTGACAAAATTGACAAGTTTTTGAA 57.630 26.923 23.94 13.91 40.89 2.69
819 828 7.953158 TGTGACAAAATTGACAAGTTTTTGA 57.047 28.000 23.94 7.82 40.89 2.69
855 864 9.341078 AGTTTTTGAATTGTTTGGATTGCTTAT 57.659 25.926 0.00 0.00 0.00 1.73
1024 1044 2.897326 GGCCTCTAGGATTCTCTTCTCC 59.103 54.545 0.00 0.00 37.39 3.71
1153 1202 2.922503 TGGAGTGCGGCAGGAAGA 60.923 61.111 1.18 0.00 0.00 2.87
1391 1449 1.005394 TTCTCACGGAAAGTCGGGC 60.005 57.895 0.00 0.00 32.91 6.13
1393 1451 0.038159 AGCTTCTCACGGAAAGTCGG 60.038 55.000 0.00 0.00 33.07 4.79
1396 1454 1.871080 CACAGCTTCTCACGGAAAGT 58.129 50.000 0.00 0.00 33.07 2.66
1447 1505 2.797278 CCCATCGTCCCTCCTTCCG 61.797 68.421 0.00 0.00 0.00 4.30
1459 1517 3.630204 GCAGACGTATGCCCATCG 58.370 61.111 24.20 0.00 40.43 3.84
1529 1587 1.275421 GGTTGGGAAGAGAGAGGGGG 61.275 65.000 0.00 0.00 0.00 5.40
1530 1588 0.547712 TGGTTGGGAAGAGAGAGGGG 60.548 60.000 0.00 0.00 0.00 4.79
1531 1589 1.362224 TTGGTTGGGAAGAGAGAGGG 58.638 55.000 0.00 0.00 0.00 4.30
1532 1590 2.639839 TCTTTGGTTGGGAAGAGAGAGG 59.360 50.000 0.00 0.00 0.00 3.69
1533 1591 4.512484 GATCTTTGGTTGGGAAGAGAGAG 58.488 47.826 0.00 0.00 35.54 3.20
1534 1592 3.055819 CGATCTTTGGTTGGGAAGAGAGA 60.056 47.826 0.00 0.00 35.54 3.10
1535 1593 3.265791 CGATCTTTGGTTGGGAAGAGAG 58.734 50.000 0.00 0.00 35.54 3.20
1536 1594 2.615493 GCGATCTTTGGTTGGGAAGAGA 60.615 50.000 0.00 0.00 35.54 3.10
1537 1595 1.740025 GCGATCTTTGGTTGGGAAGAG 59.260 52.381 0.00 0.00 35.54 2.85
1538 1596 1.821216 GCGATCTTTGGTTGGGAAGA 58.179 50.000 0.00 0.00 36.43 2.87
1539 1597 0.447801 CGCGATCTTTGGTTGGGAAG 59.552 55.000 0.00 0.00 0.00 3.46
1540 1598 0.250553 ACGCGATCTTTGGTTGGGAA 60.251 50.000 15.93 0.00 0.00 3.97
1541 1599 0.672401 GACGCGATCTTTGGTTGGGA 60.672 55.000 15.93 0.00 0.00 4.37
1542 1600 1.644786 GGACGCGATCTTTGGTTGGG 61.645 60.000 15.93 0.00 0.00 4.12
1543 1601 0.673644 AGGACGCGATCTTTGGTTGG 60.674 55.000 15.93 0.00 0.00 3.77
1544 1602 0.443869 CAGGACGCGATCTTTGGTTG 59.556 55.000 15.93 0.00 0.00 3.77
1545 1603 0.320374 TCAGGACGCGATCTTTGGTT 59.680 50.000 15.93 0.00 0.00 3.67
1546 1604 0.537188 ATCAGGACGCGATCTTTGGT 59.463 50.000 15.93 3.66 0.00 3.67
1547 1605 1.328680 CAATCAGGACGCGATCTTTGG 59.671 52.381 15.93 0.00 0.00 3.28
1548 1606 1.328680 CCAATCAGGACGCGATCTTTG 59.671 52.381 15.93 11.31 41.22 2.77
1549 1607 1.207089 TCCAATCAGGACGCGATCTTT 59.793 47.619 15.93 0.00 43.07 2.52
1550 1608 0.824109 TCCAATCAGGACGCGATCTT 59.176 50.000 15.93 0.00 43.07 2.40
1551 1609 2.504920 TCCAATCAGGACGCGATCT 58.495 52.632 15.93 6.63 43.07 2.75
1559 1617 2.289444 GGTGAAAGACGTCCAATCAGGA 60.289 50.000 13.01 0.00 46.75 3.86
1560 1618 2.076863 GGTGAAAGACGTCCAATCAGG 58.923 52.381 13.01 0.00 39.47 3.86
1561 1619 2.738846 CTGGTGAAAGACGTCCAATCAG 59.261 50.000 13.01 7.54 0.00 2.90
1562 1620 2.104111 ACTGGTGAAAGACGTCCAATCA 59.896 45.455 13.01 11.47 0.00 2.57
1563 1621 2.767505 ACTGGTGAAAGACGTCCAATC 58.232 47.619 13.01 8.84 0.00 2.67
1576 1634 6.442541 TTTCCCTTATACAGAAACTGGTGA 57.557 37.500 0.00 0.00 35.51 4.02
1577 1635 7.703058 ATTTTCCCTTATACAGAAACTGGTG 57.297 36.000 0.00 0.00 35.51 4.17
1595 1653 7.224949 CCTTCCGAGAGTACATTAGAATTTTCC 59.775 40.741 0.00 0.00 0.00 3.13
1597 1655 6.539103 GCCTTCCGAGAGTACATTAGAATTTT 59.461 38.462 0.00 0.00 0.00 1.82
1598 1656 6.049790 GCCTTCCGAGAGTACATTAGAATTT 58.950 40.000 0.00 0.00 0.00 1.82
1614 1672 1.564483 AATTAACCCCCGCCTTCCGA 61.564 55.000 0.00 0.00 40.02 4.55
1640 1715 6.811665 GCACTCCAAAACAGAAAACTAAAACT 59.188 34.615 0.00 0.00 0.00 2.66
1641 1716 6.237463 CGCACTCCAAAACAGAAAACTAAAAC 60.237 38.462 0.00 0.00 0.00 2.43
1642 1717 5.802956 CGCACTCCAAAACAGAAAACTAAAA 59.197 36.000 0.00 0.00 0.00 1.52
1643 1718 5.336744 CGCACTCCAAAACAGAAAACTAAA 58.663 37.500 0.00 0.00 0.00 1.85
1644 1719 4.201970 CCGCACTCCAAAACAGAAAACTAA 60.202 41.667 0.00 0.00 0.00 2.24
1645 1720 3.314080 CCGCACTCCAAAACAGAAAACTA 59.686 43.478 0.00 0.00 0.00 2.24
1667 1742 1.175983 ATCCATCGTCTCCGGCTCTC 61.176 60.000 0.00 0.00 33.95 3.20
1668 1743 0.757188 AATCCATCGTCTCCGGCTCT 60.757 55.000 0.00 0.00 33.95 4.09
1669 1744 0.598680 CAATCCATCGTCTCCGGCTC 60.599 60.000 0.00 0.00 33.95 4.70
1670 1745 1.043116 TCAATCCATCGTCTCCGGCT 61.043 55.000 0.00 0.00 33.95 5.52
1671 1746 0.876342 GTCAATCCATCGTCTCCGGC 60.876 60.000 0.00 0.00 33.95 6.13
1672 1747 0.595053 CGTCAATCCATCGTCTCCGG 60.595 60.000 0.00 0.00 33.95 5.14
1673 1748 0.380733 TCGTCAATCCATCGTCTCCG 59.619 55.000 0.00 0.00 0.00 4.63
1674 1749 2.223829 ACATCGTCAATCCATCGTCTCC 60.224 50.000 0.00 0.00 0.00 3.71
1675 1750 3.085443 ACATCGTCAATCCATCGTCTC 57.915 47.619 0.00 0.00 0.00 3.36
1714 1789 3.449737 CCTCCATGTCATCCTGCATTTTT 59.550 43.478 0.00 0.00 0.00 1.94
1715 1790 3.028850 CCTCCATGTCATCCTGCATTTT 58.971 45.455 0.00 0.00 0.00 1.82
1716 1791 2.024655 ACCTCCATGTCATCCTGCATTT 60.025 45.455 0.00 0.00 0.00 2.32
1809 1894 1.707427 ACACTTCAGGGGCTCAAGATT 59.293 47.619 0.00 0.00 0.00 2.40
1814 1899 2.091885 AGAAAAACACTTCAGGGGCTCA 60.092 45.455 0.00 0.00 0.00 4.26
1815 1900 2.587522 AGAAAAACACTTCAGGGGCTC 58.412 47.619 0.00 0.00 0.00 4.70
1816 1901 2.755952 AGAAAAACACTTCAGGGGCT 57.244 45.000 0.00 0.00 0.00 5.19
1817 1902 2.287608 CGAAGAAAAACACTTCAGGGGC 60.288 50.000 0.00 0.00 42.39 5.80
1818 1903 3.211045 TCGAAGAAAAACACTTCAGGGG 58.789 45.455 0.00 0.00 42.39 4.79
1819 1904 5.438761 AATCGAAGAAAAACACTTCAGGG 57.561 39.130 0.00 0.00 43.58 4.45
1862 1947 3.636231 CGCACCCAGTCTCCCCAA 61.636 66.667 0.00 0.00 0.00 4.12
1869 1954 4.576463 AGATATCAAAAATCGCACCCAGTC 59.424 41.667 5.32 0.00 0.00 3.51
1890 1975 3.052620 GCGTCAGTAGCCGAGCAGA 62.053 63.158 0.00 0.00 0.00 4.26
1897 1982 2.351726 CCAAATTACTGCGTCAGTAGCC 59.648 50.000 15.80 0.00 45.83 3.93
2044 2130 2.847133 GTGCTATTAGCGACGCTATAGC 59.153 50.000 34.54 34.54 46.26 2.97
2045 2131 3.092135 CGTGCTATTAGCGACGCTATAG 58.908 50.000 28.67 26.76 46.26 1.31
2046 2132 3.113325 CGTGCTATTAGCGACGCTATA 57.887 47.619 28.67 19.32 46.26 1.31
2047 2133 1.965083 CGTGCTATTAGCGACGCTAT 58.035 50.000 28.67 19.98 46.26 2.97
2048 2134 3.449789 CGTGCTATTAGCGACGCTA 57.550 52.632 25.04 25.04 46.26 4.26
2049 2135 4.303853 CGTGCTATTAGCGACGCT 57.696 55.556 27.45 27.45 46.26 5.07
2051 2137 1.965083 ATAGCGTGCTATTAGCGACG 58.035 50.000 23.96 23.96 46.26 5.12
2052 2138 3.846896 CACTATAGCGTGCTATTAGCGAC 59.153 47.826 18.62 9.06 46.26 5.19
2053 2139 3.501062 ACACTATAGCGTGCTATTAGCGA 59.499 43.478 18.62 0.92 46.26 4.93
2054 2140 3.822996 ACACTATAGCGTGCTATTAGCG 58.177 45.455 18.62 10.66 46.26 4.26
2055 2141 7.027760 TCAATACACTATAGCGTGCTATTAGC 58.972 38.462 18.62 8.80 42.82 3.09
2056 2142 8.451748 TCTCAATACACTATAGCGTGCTATTAG 58.548 37.037 18.62 14.98 39.65 1.73
2057 2143 8.331730 TCTCAATACACTATAGCGTGCTATTA 57.668 34.615 18.62 6.58 39.65 0.98
2058 2144 7.215719 TCTCAATACACTATAGCGTGCTATT 57.784 36.000 18.62 4.60 39.65 1.73
2059 2145 6.819397 TCTCAATACACTATAGCGTGCTAT 57.181 37.500 17.65 17.65 41.58 2.97
2060 2146 6.628919 TTCTCAATACACTATAGCGTGCTA 57.371 37.500 3.73 3.73 38.45 3.49
2061 2147 5.515797 TTCTCAATACACTATAGCGTGCT 57.484 39.130 3.60 0.00 38.45 4.40
2062 2148 6.201044 ACAATTCTCAATACACTATAGCGTGC 59.799 38.462 3.60 0.00 38.45 5.34
2063 2149 7.649705 AGACAATTCTCAATACACTATAGCGTG 59.350 37.037 3.60 0.00 40.67 5.34
2064 2150 7.717568 AGACAATTCTCAATACACTATAGCGT 58.282 34.615 0.00 0.00 0.00 5.07
2065 2151 8.221801 GAGACAATTCTCAATACACTATAGCG 57.778 38.462 0.00 0.00 46.84 4.26
2079 2165 8.897457 TCGATATATTTAGCGAGACAATTCTC 57.103 34.615 0.00 0.00 40.98 2.87
2090 2176 9.290483 AGACATTGTACATCGATATATTTAGCG 57.710 33.333 0.00 0.00 38.54 4.26
2093 2179 9.285770 GCGAGACATTGTACATCGATATATTTA 57.714 33.333 17.54 0.00 35.47 1.40
2094 2180 8.029522 AGCGAGACATTGTACATCGATATATTT 58.970 33.333 17.54 0.00 35.47 1.40
2095 2181 7.539436 AGCGAGACATTGTACATCGATATATT 58.461 34.615 17.54 0.00 35.47 1.28
2096 2182 7.089770 AGCGAGACATTGTACATCGATATAT 57.910 36.000 17.54 0.00 35.47 0.86
2097 2183 6.496338 AGCGAGACATTGTACATCGATATA 57.504 37.500 17.54 0.00 35.47 0.86
2098 2184 5.378292 AGCGAGACATTGTACATCGATAT 57.622 39.130 17.54 0.00 35.47 1.63
2099 2185 4.830826 AGCGAGACATTGTACATCGATA 57.169 40.909 17.54 0.00 35.47 2.92
2100 2186 3.717400 AGCGAGACATTGTACATCGAT 57.283 42.857 17.54 9.92 35.47 3.59
2101 2187 4.625972 TTAGCGAGACATTGTACATCGA 57.374 40.909 17.54 0.00 35.47 3.59
2102 2188 5.059832 GCTATTAGCGAGACATTGTACATCG 59.940 44.000 10.67 10.67 36.51 3.84
2103 2189 5.920840 TGCTATTAGCGAGACATTGTACATC 59.079 40.000 10.94 0.00 46.26 3.06
2104 2190 5.692204 GTGCTATTAGCGAGACATTGTACAT 59.308 40.000 10.94 0.00 46.26 2.29
2105 2191 5.041287 GTGCTATTAGCGAGACATTGTACA 58.959 41.667 10.94 0.00 46.26 2.90
2106 2192 4.146616 CGTGCTATTAGCGAGACATTGTAC 59.853 45.833 10.94 0.00 46.26 2.90
2107 2193 4.287720 CGTGCTATTAGCGAGACATTGTA 58.712 43.478 10.94 0.00 46.26 2.41
2108 2194 3.116300 CGTGCTATTAGCGAGACATTGT 58.884 45.455 10.94 0.00 46.26 2.71
2109 2195 2.097202 GCGTGCTATTAGCGAGACATTG 60.097 50.000 10.94 0.00 46.26 2.82
2110 2196 2.128035 GCGTGCTATTAGCGAGACATT 58.872 47.619 10.94 0.00 46.26 2.71
2111 2197 1.338337 AGCGTGCTATTAGCGAGACAT 59.662 47.619 10.94 0.00 46.26 3.06
2112 2198 0.738975 AGCGTGCTATTAGCGAGACA 59.261 50.000 10.94 0.00 46.26 3.41
2113 2199 2.682952 TAGCGTGCTATTAGCGAGAC 57.317 50.000 10.94 3.28 46.26 3.36
2114 2200 3.181509 GCTATAGCGTGCTATTAGCGAGA 60.182 47.826 18.62 0.00 46.26 4.04
2115 2201 3.102276 GCTATAGCGTGCTATTAGCGAG 58.898 50.000 18.62 11.00 46.26 5.03
2116 2202 3.132629 GCTATAGCGTGCTATTAGCGA 57.867 47.619 18.62 0.92 46.26 4.93
2142 2228 8.721478 CCTCAAAATATGCTATTAGCGTGTTAT 58.279 33.333 18.61 5.81 46.26 1.89
2143 2229 7.713507 ACCTCAAAATATGCTATTAGCGTGTTA 59.286 33.333 18.61 4.85 46.26 2.41
2144 2230 6.542370 ACCTCAAAATATGCTATTAGCGTGTT 59.458 34.615 18.61 15.48 46.26 3.32
2145 2231 6.055588 ACCTCAAAATATGCTATTAGCGTGT 58.944 36.000 18.61 10.54 46.26 4.49
2146 2232 6.545504 ACCTCAAAATATGCTATTAGCGTG 57.454 37.500 18.61 3.72 46.26 5.34
2147 2233 5.405571 CGACCTCAAAATATGCTATTAGCGT 59.594 40.000 14.53 14.53 46.26 5.07
2148 2234 5.668866 GCGACCTCAAAATATGCTATTAGCG 60.669 44.000 10.94 0.00 46.26 4.26
2149 2235 5.390991 GGCGACCTCAAAATATGCTATTAGC 60.391 44.000 8.80 8.80 42.82 3.09
2150 2236 5.163953 CGGCGACCTCAAAATATGCTATTAG 60.164 44.000 0.00 0.00 0.00 1.73
2151 2237 4.688879 CGGCGACCTCAAAATATGCTATTA 59.311 41.667 0.00 0.00 0.00 0.98
2152 2238 3.498397 CGGCGACCTCAAAATATGCTATT 59.502 43.478 0.00 0.00 0.00 1.73
2153 2239 3.067106 CGGCGACCTCAAAATATGCTAT 58.933 45.455 0.00 0.00 0.00 2.97
2154 2240 2.479837 CGGCGACCTCAAAATATGCTA 58.520 47.619 0.00 0.00 0.00 3.49
2155 2241 1.299541 CGGCGACCTCAAAATATGCT 58.700 50.000 0.00 0.00 0.00 3.79
2156 2242 0.317020 GCGGCGACCTCAAAATATGC 60.317 55.000 12.98 0.00 0.00 3.14
2157 2243 1.299541 AGCGGCGACCTCAAAATATG 58.700 50.000 12.98 0.00 0.00 1.78
2158 2244 2.902705 TAGCGGCGACCTCAAAATAT 57.097 45.000 12.98 0.00 0.00 1.28
2159 2245 2.902705 ATAGCGGCGACCTCAAAATA 57.097 45.000 12.98 0.00 0.00 1.40
2160 2246 2.038387 AATAGCGGCGACCTCAAAAT 57.962 45.000 12.98 0.00 0.00 1.82
2161 2247 1.816074 AAATAGCGGCGACCTCAAAA 58.184 45.000 12.98 0.00 0.00 2.44
2162 2248 1.816074 AAAATAGCGGCGACCTCAAA 58.184 45.000 12.98 0.00 0.00 2.69
2163 2249 2.093869 AGTAAAATAGCGGCGACCTCAA 60.094 45.455 12.98 0.00 0.00 3.02
2164 2250 1.479323 AGTAAAATAGCGGCGACCTCA 59.521 47.619 12.98 0.00 0.00 3.86
2165 2251 1.859080 CAGTAAAATAGCGGCGACCTC 59.141 52.381 12.98 0.00 0.00 3.85
2166 2252 1.206371 ACAGTAAAATAGCGGCGACCT 59.794 47.619 12.98 0.56 0.00 3.85
2167 2253 1.648504 ACAGTAAAATAGCGGCGACC 58.351 50.000 12.98 0.00 0.00 4.79
2168 2254 2.218075 GCTACAGTAAAATAGCGGCGAC 59.782 50.000 12.98 1.23 34.87 5.19
2169 2255 2.466846 GCTACAGTAAAATAGCGGCGA 58.533 47.619 12.98 0.00 34.87 5.54
2170 2256 2.924432 GCTACAGTAAAATAGCGGCG 57.076 50.000 0.51 0.51 34.87 6.46
2174 2260 1.859080 AGCGCGCTACAGTAAAATAGC 59.141 47.619 35.79 0.00 40.40 2.97
2175 2261 5.824243 AATAGCGCGCTACAGTAAAATAG 57.176 39.130 40.42 0.00 0.00 1.73
2176 2262 6.592798 AAAATAGCGCGCTACAGTAAAATA 57.407 33.333 40.42 19.14 0.00 1.40
2177 2263 5.479716 AAAATAGCGCGCTACAGTAAAAT 57.520 34.783 40.42 22.12 0.00 1.82
2178 2264 4.932268 AAAATAGCGCGCTACAGTAAAA 57.068 36.364 40.42 20.74 0.00 1.52
2179 2265 4.932268 AAAAATAGCGCGCTACAGTAAA 57.068 36.364 40.42 21.55 0.00 2.01
2288 2374 8.968242 CAAAAGAAGTAGCATAACTTTCAAACC 58.032 33.333 0.00 0.00 39.78 3.27
2294 2380 9.555727 TCAGTACAAAAGAAGTAGCATAACTTT 57.444 29.630 0.00 0.00 39.78 2.66
2336 2423 4.640789 AAACACACGAACCATTTGCTAA 57.359 36.364 0.00 0.00 0.00 3.09
2349 2436 1.732259 GACTGGATGGCTAAACACACG 59.268 52.381 0.00 0.00 0.00 4.49
2368 2455 1.669440 GCAGACGGTTACACCTGGA 59.331 57.895 0.00 0.00 35.66 3.86
2369 2456 1.375523 GGCAGACGGTTACACCTGG 60.376 63.158 0.00 0.00 35.66 4.45
2370 2457 0.036388 ATGGCAGACGGTTACACCTG 60.036 55.000 0.00 0.00 35.66 4.00
2371 2458 0.690762 AATGGCAGACGGTTACACCT 59.309 50.000 0.00 0.00 35.66 4.00
2372 2459 1.084289 GAATGGCAGACGGTTACACC 58.916 55.000 0.00 0.00 34.05 4.16
2422 2509 9.482627 CCACTTATTGTTTTTAAATAACAGCCA 57.517 29.630 12.49 3.87 36.89 4.75
2525 2612 2.095213 CGAAACCACGTGACATAATGGG 59.905 50.000 19.30 0.00 36.47 4.00
2530 2617 1.996898 GATGCGAAACCACGTGACATA 59.003 47.619 19.30 0.00 35.59 2.29
2534 2625 2.442212 TTAGATGCGAAACCACGTGA 57.558 45.000 19.30 0.00 35.59 4.35
2546 2637 8.186163 TCTCATGTGTTCATTGAATTTAGATGC 58.814 33.333 1.78 0.00 31.15 3.91
2664 2755 6.676950 ACACAAAATGCATCTATCGTTTCAA 58.323 32.000 0.00 0.00 0.00 2.69
2670 2761 5.169561 GCGTTAACACAAAATGCATCTATCG 59.830 40.000 0.00 0.00 38.47 2.92
2709 2800 8.756864 GGACGTCTAATGAGATACAAAAGATTC 58.243 37.037 16.46 0.00 33.14 2.52
2728 2819 4.457496 CGGGCTGCATGGACGTCT 62.457 66.667 16.46 0.00 0.00 4.18
2741 2832 1.745489 CCTTTAGGTCACAGCGGGC 60.745 63.158 0.00 0.00 0.00 6.13
2777 2868 1.188863 ATGATGCCCCAAAGAGCAAC 58.811 50.000 0.00 0.00 43.36 4.17
2970 3061 9.864034 CCATAATATAAGCGTTTTTGACACTAG 57.136 33.333 0.00 0.00 0.00 2.57
2971 3062 8.832521 CCCATAATATAAGCGTTTTTGACACTA 58.167 33.333 0.00 0.00 0.00 2.74
2972 3063 7.554835 TCCCATAATATAAGCGTTTTTGACACT 59.445 33.333 0.00 0.00 0.00 3.55
2973 3064 7.642586 GTCCCATAATATAAGCGTTTTTGACAC 59.357 37.037 0.00 0.00 0.00 3.67
2974 3065 7.466185 CGTCCCATAATATAAGCGTTTTTGACA 60.466 37.037 0.00 0.00 0.00 3.58
2975 3066 6.849305 CGTCCCATAATATAAGCGTTTTTGAC 59.151 38.462 0.00 0.00 0.00 3.18
2976 3067 6.017770 CCGTCCCATAATATAAGCGTTTTTGA 60.018 38.462 0.00 0.00 0.00 2.69
2977 3068 6.017770 TCCGTCCCATAATATAAGCGTTTTTG 60.018 38.462 0.00 0.00 0.00 2.44
2979 3070 5.613329 TCCGTCCCATAATATAAGCGTTTT 58.387 37.500 0.00 0.00 0.00 2.43
2980 3071 5.217978 TCCGTCCCATAATATAAGCGTTT 57.782 39.130 0.00 0.00 0.00 3.60
2981 3072 4.322499 CCTCCGTCCCATAATATAAGCGTT 60.322 45.833 0.00 0.00 0.00 4.84
2982 3073 3.194968 CCTCCGTCCCATAATATAAGCGT 59.805 47.826 0.00 0.00 0.00 5.07
2983 3074 3.430374 CCCTCCGTCCCATAATATAAGCG 60.430 52.174 0.00 0.00 0.00 4.68
2984 3075 3.773119 TCCCTCCGTCCCATAATATAAGC 59.227 47.826 0.00 0.00 0.00 3.09
2985 3076 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2986 3077 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2987 3078 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2988 3079 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2989 3080 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
2990 3081 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2991 3082 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
2992 3083 3.116862 AGAAATACTCCCTCCGTCCCATA 60.117 47.826 0.00 0.00 0.00 2.74
2993 3084 2.047830 GAAATACTCCCTCCGTCCCAT 58.952 52.381 0.00 0.00 0.00 4.00
2994 3085 1.007963 AGAAATACTCCCTCCGTCCCA 59.992 52.381 0.00 0.00 0.00 4.37
2995 3086 1.790818 AGAAATACTCCCTCCGTCCC 58.209 55.000 0.00 0.00 0.00 4.46
2996 3087 3.908643 AAAGAAATACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
2997 3088 7.287512 ACTATAAAGAAATACTCCCTCCGTC 57.712 40.000 0.00 0.00 0.00 4.79
2998 3089 7.672122 AACTATAAAGAAATACTCCCTCCGT 57.328 36.000 0.00 0.00 0.00 4.69
3389 3767 6.091305 CCATACAGGATCATTAACATAGCACG 59.909 42.308 0.00 0.00 41.22 5.34
3528 3907 5.109903 TCTAAGTTAGCCGAAAGAGAATGC 58.890 41.667 4.93 0.00 0.00 3.56
3686 4070 1.518903 GGCAGGCTGTGAACTTGGAC 61.519 60.000 17.16 0.00 0.00 4.02
3715 4099 5.010213 TCGTATGATTGTCGGGTTCATGATA 59.990 40.000 0.00 0.00 32.58 2.15
3737 4121 3.914312 ACTTGAGTTGTACCATCAGTCG 58.086 45.455 0.00 0.00 0.00 4.18
3742 4126 9.216117 ACTAACATTAACTTGAGTTGTACCATC 57.784 33.333 6.64 0.00 38.90 3.51
3808 4192 0.036388 CTAGCACCATCACGTTGGGT 60.036 55.000 10.92 4.09 41.35 4.51
4749 5135 8.570068 TTGTTGATTATAACAAACTACTCCCC 57.430 34.615 11.42 0.00 44.84 4.81
4847 5233 3.832490 AGAATTGGGGTTTTGTTAGGAGC 59.168 43.478 0.00 0.00 0.00 4.70
4911 5297 2.188524 CACTAGCACAGCTCACATACG 58.811 52.381 0.00 0.00 40.44 3.06
4933 5319 2.359107 AGATGCCAGGCACACACG 60.359 61.111 19.10 0.00 43.04 4.49
5843 6650 2.331893 CGGTTGGCTTGGCGATTGA 61.332 57.895 0.00 0.00 0.00 2.57
5900 7299 0.690192 TGTGGAAGGGAAGCGATTCA 59.310 50.000 16.24 0.00 0.00 2.57
6335 7736 5.587388 AACCATCTGGATTGCATACAAAG 57.413 39.130 2.55 0.00 37.77 2.77
6371 7772 3.853475 CCCTGCAGAATGAACAAATTCC 58.147 45.455 17.39 0.00 39.69 3.01
6737 8147 3.117813 GGTACATTTAGGTGGCATGGGTA 60.118 47.826 0.00 0.00 0.00 3.69
6818 8231 2.354704 CCGTTCTTAGGGCAGTTCATGA 60.355 50.000 0.00 0.00 0.00 3.07
6893 8306 2.095768 ACAATTCATTTCTCGGTGCGTG 60.096 45.455 0.00 0.00 0.00 5.34
6912 8325 4.962362 TGAGACCCTCATATGCTTCTTACA 59.038 41.667 0.00 0.00 35.39 2.41
6999 8412 2.949644 AGCCACGGTTAAGCCAATTATC 59.050 45.455 0.00 0.00 36.97 1.75
7023 8436 8.962679 GTACATTCAATCCTAAACCATAAACCA 58.037 33.333 0.00 0.00 0.00 3.67
7118 8532 6.652481 GCATATGCTACTAGTGATCAACCAAT 59.348 38.462 20.64 0.00 38.21 3.16
7125 8539 6.098679 CCTTCTGCATATGCTACTAGTGATC 58.901 44.000 27.13 0.00 42.66 2.92
7192 8607 5.178797 ACCAGTCAGTACTACAAATGCATC 58.821 41.667 0.00 0.00 33.48 3.91
7459 9014 1.739466 CACCCATCAGTTCATCAACGG 59.261 52.381 0.00 0.00 37.61 4.44
7556 9118 8.566260 ACAAATCTTCTCTCAAAGTTTCTCATG 58.434 33.333 0.00 0.00 0.00 3.07
7603 9165 3.926616 AGGAGTTCTTAATGACACACCG 58.073 45.455 0.00 0.00 0.00 4.94
7617 9179 4.836175 TCCCAATGGGTTTAAAAGGAGTTC 59.164 41.667 19.28 0.00 44.74 3.01
7635 9197 8.491134 TCGATTTCTCCTTAAAGATTATCCCAA 58.509 33.333 0.00 0.00 0.00 4.12
7707 11155 5.392995 TCATTTTTCCTGGATGGTTTCTCA 58.607 37.500 0.00 0.00 37.07 3.27
7786 11234 8.265055 ACCCGGTAATAGTCATCCAATTATATG 58.735 37.037 0.00 0.00 0.00 1.78
7787 11235 8.388656 ACCCGGTAATAGTCATCCAATTATAT 57.611 34.615 0.00 0.00 0.00 0.86
7807 11255 6.649557 GGTATGAGACAATCTTTATAACCCGG 59.350 42.308 0.00 0.00 0.00 5.73
7814 11262 9.872684 ATGGAATTGGTATGAGACAATCTTTAT 57.127 29.630 0.00 0.00 36.36 1.40
7895 11379 4.427096 TGCAACGAAGTCTTGTGAAAAA 57.573 36.364 0.00 0.00 45.00 1.94
7940 11426 7.970614 GCTCCAAATTTACTTATCCTCACAAAG 59.029 37.037 0.00 0.00 0.00 2.77
7976 11462 8.256605 ACAGCTTATATGAAGAGCGATATCATT 58.743 33.333 6.73 0.00 41.19 2.57
7984 11470 8.749841 ATTACTTACAGCTTATATGAAGAGCG 57.250 34.615 0.00 0.00 41.19 5.03
8008 11494 0.523072 CTGCCGCTTGTGTTGCTTAT 59.477 50.000 0.00 0.00 0.00 1.73
8161 11655 7.371159 TCATCTAAATAGACGACAATGGCTAG 58.629 38.462 0.00 0.00 34.72 3.42
8226 11720 0.557729 ATCCCAACAATGCTAGGGGG 59.442 55.000 5.58 0.00 41.77 5.40
8348 11870 0.536460 TCAGAGCGAAACCCCAAACC 60.536 55.000 0.00 0.00 0.00 3.27
8397 11919 8.487313 ACTCATATAATTGCAAACTACGTCAA 57.513 30.769 1.71 0.00 0.00 3.18
8453 11976 8.598041 GGATGATAACAAAGTGATATAGGGACT 58.402 37.037 0.00 0.00 46.37 3.85
8515 12038 6.329460 GGGGTTCTTGTAAGTAGGAGGATATT 59.671 42.308 0.00 0.00 0.00 1.28
8523 12046 4.324267 CAAGTGGGGTTCTTGTAAGTAGG 58.676 47.826 0.00 0.00 37.90 3.18
8526 12049 2.583143 GCAAGTGGGGTTCTTGTAAGT 58.417 47.619 7.35 0.00 42.67 2.24
8534 12057 2.039879 TCTTCTAAGGCAAGTGGGGTTC 59.960 50.000 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.