Multiple sequence alignment - TraesCS4D01G131200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G131200 chr4D 100.000 4527 0 0 1 4527 117735939 117731413 0.000000e+00 8360.0
1 TraesCS4D01G131200 chr4D 94.851 505 17 2 168 671 117735269 117734773 0.000000e+00 780.0
2 TraesCS4D01G131200 chr4D 94.851 505 17 2 671 1167 117735772 117735269 0.000000e+00 780.0
3 TraesCS4D01G131200 chr4D 85.135 222 27 4 709 925 117736775 117736995 5.890000e-54 222.0
4 TraesCS4D01G131200 chr4A 91.484 2149 105 39 924 3023 456290019 456292138 0.000000e+00 2883.0
5 TraesCS4D01G131200 chr4A 93.731 335 16 3 3054 3383 456292131 456292465 8.750000e-137 497.0
6 TraesCS4D01G131200 chr4A 94.332 247 10 2 428 670 456290018 456290264 4.280000e-100 375.0
7 TraesCS4D01G131200 chr4B 94.121 1820 49 19 1701 3483 179849432 179847634 0.000000e+00 2715.0
8 TraesCS4D01G131200 chr4B 94.723 739 34 4 950 1687 179850270 179849536 0.000000e+00 1144.0
9 TraesCS4D01G131200 chr4B 85.383 431 33 14 1 426 630100372 630099967 1.950000e-113 420.0
10 TraesCS4D01G131200 chr4B 94.470 217 11 1 455 670 179850270 179850054 2.610000e-87 333.0
11 TraesCS4D01G131200 chr4B 80.374 107 11 7 4109 4207 21463950 21464054 6.280000e-09 73.1
12 TraesCS4D01G131200 chr3A 87.967 964 66 26 3607 4524 37519485 37520444 0.000000e+00 1092.0
13 TraesCS4D01G131200 chr3A 92.857 84 6 0 2694 2777 584095412 584095495 6.150000e-24 122.0
14 TraesCS4D01G131200 chr5A 84.122 951 101 29 3607 4523 641560507 641561441 0.000000e+00 874.0
15 TraesCS4D01G131200 chr5A 84.947 857 84 27 3695 4523 641561646 641562485 0.000000e+00 826.0
16 TraesCS4D01G131200 chr5A 92.737 358 21 1 3860 4212 572531564 572531207 3.120000e-141 512.0
17 TraesCS4D01G131200 chr5A 86.875 320 24 7 4220 4526 572531164 572530850 4.340000e-90 342.0
18 TraesCS4D01G131200 chr5A 86.611 239 16 3 4300 4526 572531549 572531783 2.700000e-62 250.0
19 TraesCS4D01G131200 chr5A 82.870 216 31 2 709 919 680361823 680362037 5.980000e-44 189.0
20 TraesCS4D01G131200 chr5A 100.000 29 0 0 1859 1887 597255843 597255871 2.000000e-03 54.7
21 TraesCS4D01G131200 chr3D 84.211 950 95 27 3607 4524 589200853 589199927 0.000000e+00 872.0
22 TraesCS4D01G131200 chr3D 94.048 84 5 0 2699 2782 442973514 442973597 1.320000e-25 128.0
23 TraesCS4D01G131200 chr3D 100.000 39 0 0 2837 2875 442973685 442973723 6.280000e-09 73.1
24 TraesCS4D01G131200 chr6D 82.700 948 120 31 3607 4526 98749737 98750668 0.000000e+00 802.0
25 TraesCS4D01G131200 chr2D 81.466 955 124 37 3607 4526 330754819 330753883 0.000000e+00 734.0
26 TraesCS4D01G131200 chr2D 97.653 426 10 0 1 426 71605340 71605765 0.000000e+00 732.0
27 TraesCS4D01G131200 chr2D 90.385 260 17 1 671 922 71605507 71605766 7.260000e-88 335.0
28 TraesCS4D01G131200 chr2D 82.776 389 52 13 3826 4207 145867648 145868028 2.610000e-87 333.0
29 TraesCS4D01G131200 chr2D 82.875 327 42 11 3826 4147 330755054 330754737 9.590000e-72 281.0
30 TraesCS4D01G131200 chr2D 82.488 217 29 6 712 922 71604498 71604285 1.000000e-41 182.0
31 TraesCS4D01G131200 chr5D 96.047 430 17 0 1 430 494055229 494055658 0.000000e+00 701.0
32 TraesCS4D01G131200 chr5D 90.875 263 16 1 668 922 494055393 494055655 3.350000e-91 346.0
33 TraesCS4D01G131200 chr7A 80.042 942 118 42 3607 4525 44553054 44552160 6.390000e-178 634.0
34 TraesCS4D01G131200 chr7A 90.984 122 10 1 3489 3609 670705715 670705836 3.620000e-36 163.0
35 TraesCS4D01G131200 chr7A 90.164 122 11 1 3489 3609 44553754 44553633 1.690000e-34 158.0
36 TraesCS4D01G131200 chr7D 76.865 925 132 53 3662 4525 1415771 1414868 8.930000e-122 448.0
37 TraesCS4D01G131200 chr7D 84.706 425 37 14 5 426 5996691 5997090 2.540000e-107 399.0
38 TraesCS4D01G131200 chr7D 74.871 967 146 66 3607 4525 11710154 11709237 2.590000e-92 350.0
39 TraesCS4D01G131200 chr7D 81.992 261 21 9 671 922 5996848 5997091 9.930000e-47 198.0
40 TraesCS4D01G131200 chr7D 90.984 122 10 1 3489 3609 236647747 236647868 3.620000e-36 163.0
41 TraesCS4D01G131200 chr6B 85.714 427 51 8 8 429 244854092 244853671 4.160000e-120 442.0
42 TraesCS4D01G131200 chr6B 88.077 260 22 2 671 922 244853931 244853673 2.650000e-77 300.0
43 TraesCS4D01G131200 chr6A 79.201 601 93 24 3617 4207 32878174 32878752 5.490000e-104 388.0
44 TraesCS4D01G131200 chr6A 94.545 110 5 1 3489 3598 100854416 100854524 7.790000e-38 169.0
45 TraesCS4D01G131200 chr1D 89.236 288 25 4 144 426 491887208 491887494 5.570000e-94 355.0
46 TraesCS4D01G131200 chr1D 89.236 288 25 4 144 426 491891147 491891433 5.570000e-94 355.0
47 TraesCS4D01G131200 chr1D 88.889 288 27 3 144 426 491881931 491882218 2.590000e-92 350.0
48 TraesCS4D01G131200 chr1D 92.537 67 5 0 763 829 491876515 491876449 3.730000e-16 97.1
49 TraesCS4D01G131200 chrUn 90.164 122 11 1 3489 3609 312659985 312659864 1.690000e-34 158.0
50 TraesCS4D01G131200 chrUn 90.164 122 11 1 3489 3609 358316786 358316907 1.690000e-34 158.0
51 TraesCS4D01G131200 chrUn 90.164 122 11 1 3489 3609 391193415 391193294 1.690000e-34 158.0
52 TraesCS4D01G131200 chr2A 90.164 122 11 1 3489 3609 656546264 656546143 1.690000e-34 158.0
53 TraesCS4D01G131200 chr1B 90.164 122 11 1 3489 3609 688545097 688545218 1.690000e-34 158.0
54 TraesCS4D01G131200 chr3B 93.671 79 5 0 2699 2777 580784831 580784909 7.960000e-23 119.0
55 TraesCS4D01G131200 chr2B 84.615 78 11 1 344 420 255530795 255530872 4.860000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G131200 chr4D 117731413 117735939 4526 True 3306.666667 8360 96.567333 1 4527 3 chr4D.!!$R1 4526
1 TraesCS4D01G131200 chr4A 456290018 456292465 2447 False 1251.666667 2883 93.182333 428 3383 3 chr4A.!!$F1 2955
2 TraesCS4D01G131200 chr4B 179847634 179850270 2636 True 1397.333333 2715 94.438000 455 3483 3 chr4B.!!$R2 3028
3 TraesCS4D01G131200 chr3A 37519485 37520444 959 False 1092.000000 1092 87.967000 3607 4524 1 chr3A.!!$F1 917
4 TraesCS4D01G131200 chr5A 641560507 641562485 1978 False 850.000000 874 84.534500 3607 4523 2 chr5A.!!$F4 916
5 TraesCS4D01G131200 chr5A 572530850 572531564 714 True 427.000000 512 89.806000 3860 4526 2 chr5A.!!$R1 666
6 TraesCS4D01G131200 chr3D 589199927 589200853 926 True 872.000000 872 84.211000 3607 4524 1 chr3D.!!$R1 917
7 TraesCS4D01G131200 chr6D 98749737 98750668 931 False 802.000000 802 82.700000 3607 4526 1 chr6D.!!$F1 919
8 TraesCS4D01G131200 chr2D 330753883 330755054 1171 True 507.500000 734 82.170500 3607 4526 2 chr2D.!!$R2 919
9 TraesCS4D01G131200 chr7A 44552160 44553754 1594 True 396.000000 634 85.103000 3489 4525 2 chr7A.!!$R1 1036
10 TraesCS4D01G131200 chr7D 1414868 1415771 903 True 448.000000 448 76.865000 3662 4525 1 chr7D.!!$R1 863
11 TraesCS4D01G131200 chr7D 11709237 11710154 917 True 350.000000 350 74.871000 3607 4525 1 chr7D.!!$R2 918
12 TraesCS4D01G131200 chr6A 32878174 32878752 578 False 388.000000 388 79.201000 3617 4207 1 chr6A.!!$F1 590
13 TraesCS4D01G131200 chr1D 491887208 491891433 4225 False 355.000000 355 89.236000 144 426 2 chr1D.!!$F2 282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.029167 TCGCTTGTGTGCATTGTGTG 59.971 50.0 0.00 0.00 0.0 3.82 F
551 560 0.171455 GGTGGAGCAGTACGACAGAG 59.829 60.0 0.00 0.00 0.0 3.35 F
2469 6057 0.035317 AACGGCACTCTCAATCTGCA 59.965 50.0 0.00 0.00 32.2 4.41 F
2470 6058 0.251354 ACGGCACTCTCAATCTGCAT 59.749 50.0 0.00 0.00 32.2 3.96 F
2472 6060 0.381089 GGCACTCTCAATCTGCATGC 59.619 55.0 11.82 11.82 32.2 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 5048 1.080025 CCCGAGGAAGACGAACACC 60.080 63.158 0.00 0.0 0.0 4.16 R
2472 6060 0.108138 CGCCTCTTCCTGGGTAACTG 60.108 60.000 0.00 0.0 0.0 3.16 R
3415 7021 0.456221 AGGGTGATGCTAGTTCGTCG 59.544 55.000 0.00 0.0 0.0 5.12 R
3427 7033 0.537188 CTTAGCGGTGTGAGGGTGAT 59.463 55.000 0.00 0.0 0.0 3.06 R
3563 7169 0.544697 AATACGGACATGTGGGGGTC 59.455 55.000 1.15 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.034685 GTTTTACTTTTTAGGACTGCTTGGA 57.965 36.000 0.00 0.00 0.00 3.53
29 30 1.195115 TTAGGACTGCTTGGATCGCT 58.805 50.000 0.00 0.00 0.00 4.93
30 31 1.195115 TAGGACTGCTTGGATCGCTT 58.805 50.000 0.00 0.00 0.00 4.68
31 32 0.392193 AGGACTGCTTGGATCGCTTG 60.392 55.000 0.00 0.00 0.00 4.01
32 33 0.674895 GGACTGCTTGGATCGCTTGT 60.675 55.000 0.00 0.00 0.00 3.16
33 34 0.445436 GACTGCTTGGATCGCTTGTG 59.555 55.000 0.00 0.00 0.00 3.33
34 35 0.250467 ACTGCTTGGATCGCTTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
35 36 0.167470 CTGCTTGGATCGCTTGTGTG 59.833 55.000 0.00 0.00 0.00 3.82
36 37 1.154150 GCTTGGATCGCTTGTGTGC 60.154 57.895 0.00 0.00 0.00 4.57
37 38 1.855213 GCTTGGATCGCTTGTGTGCA 61.855 55.000 0.00 0.00 0.00 4.57
38 39 0.806868 CTTGGATCGCTTGTGTGCAT 59.193 50.000 0.00 0.00 0.00 3.96
39 40 1.200716 CTTGGATCGCTTGTGTGCATT 59.799 47.619 0.00 0.00 0.00 3.56
40 41 0.522626 TGGATCGCTTGTGTGCATTG 59.477 50.000 0.00 0.00 0.00 2.82
42 43 1.609932 GATCGCTTGTGTGCATTGTG 58.390 50.000 0.00 0.00 0.00 3.33
44 45 0.029167 TCGCTTGTGTGCATTGTGTG 59.971 50.000 0.00 0.00 0.00 3.82
45 46 0.029167 CGCTTGTGTGCATTGTGTGA 59.971 50.000 0.00 0.00 0.00 3.58
47 48 2.746269 GCTTGTGTGCATTGTGTGAAT 58.254 42.857 0.00 0.00 0.00 2.57
48 49 3.125316 GCTTGTGTGCATTGTGTGAATT 58.875 40.909 0.00 0.00 0.00 2.17
49 50 3.060138 GCTTGTGTGCATTGTGTGAATTG 60.060 43.478 0.00 0.00 0.00 2.32
51 52 3.445857 TGTGTGCATTGTGTGAATTGTG 58.554 40.909 0.00 0.00 0.00 3.33
53 54 2.101082 TGTGCATTGTGTGAATTGTGCT 59.899 40.909 0.00 0.00 33.95 4.40
54 55 2.473609 GTGCATTGTGTGAATTGTGCTG 59.526 45.455 0.00 0.00 33.95 4.41
55 56 2.101082 TGCATTGTGTGAATTGTGCTGT 59.899 40.909 0.00 0.00 33.95 4.40
56 57 3.125316 GCATTGTGTGAATTGTGCTGTT 58.875 40.909 0.00 0.00 0.00 3.16
57 58 3.556775 GCATTGTGTGAATTGTGCTGTTT 59.443 39.130 0.00 0.00 0.00 2.83
58 59 4.744137 GCATTGTGTGAATTGTGCTGTTTA 59.256 37.500 0.00 0.00 0.00 2.01
59 60 5.233902 GCATTGTGTGAATTGTGCTGTTTAA 59.766 36.000 0.00 0.00 0.00 1.52
60 61 6.238049 GCATTGTGTGAATTGTGCTGTTTAAA 60.238 34.615 0.00 0.00 0.00 1.52
61 62 7.675870 GCATTGTGTGAATTGTGCTGTTTAAAA 60.676 33.333 0.00 0.00 0.00 1.52
62 63 6.884096 TGTGTGAATTGTGCTGTTTAAAAG 57.116 33.333 0.00 0.00 0.00 2.27
63 64 5.809562 TGTGTGAATTGTGCTGTTTAAAAGG 59.190 36.000 0.00 0.00 0.00 3.11
64 65 5.810074 GTGTGAATTGTGCTGTTTAAAAGGT 59.190 36.000 0.00 0.00 0.00 3.50
65 66 5.809562 TGTGAATTGTGCTGTTTAAAAGGTG 59.190 36.000 0.00 0.00 0.00 4.00
67 68 6.701400 GTGAATTGTGCTGTTTAAAAGGTGAT 59.299 34.615 0.00 0.00 0.00 3.06
68 69 6.700960 TGAATTGTGCTGTTTAAAAGGTGATG 59.299 34.615 0.00 0.00 0.00 3.07
69 70 5.843673 TTGTGCTGTTTAAAAGGTGATGA 57.156 34.783 0.00 0.00 0.00 2.92
70 71 5.843673 TGTGCTGTTTAAAAGGTGATGAA 57.156 34.783 0.00 0.00 0.00 2.57
71 72 5.830912 TGTGCTGTTTAAAAGGTGATGAAG 58.169 37.500 0.00 0.00 0.00 3.02
73 74 3.914364 GCTGTTTAAAAGGTGATGAAGCG 59.086 43.478 0.00 0.00 0.00 4.68
74 75 3.896122 TGTTTAAAAGGTGATGAAGCGC 58.104 40.909 0.00 0.00 0.00 5.92
75 76 3.568007 TGTTTAAAAGGTGATGAAGCGCT 59.432 39.130 2.64 2.64 0.00 5.92
76 77 4.037446 TGTTTAAAAGGTGATGAAGCGCTT 59.963 37.500 25.35 25.35 0.00 4.68
78 79 3.831715 AAAAGGTGATGAAGCGCTTAC 57.168 42.857 25.11 17.35 0.00 2.34
80 81 3.887621 AAGGTGATGAAGCGCTTACTA 57.112 42.857 25.11 13.14 0.00 1.82
83 84 4.770795 AGGTGATGAAGCGCTTACTAAAT 58.229 39.130 25.11 11.71 0.00 1.40
84 85 4.572389 AGGTGATGAAGCGCTTACTAAATG 59.428 41.667 25.11 0.00 0.00 2.32
88 89 5.641636 TGATGAAGCGCTTACTAAATGACAA 59.358 36.000 25.11 0.00 0.00 3.18
90 91 4.994852 TGAAGCGCTTACTAAATGACAAGT 59.005 37.500 25.11 0.00 0.00 3.16
91 92 5.468746 TGAAGCGCTTACTAAATGACAAGTT 59.531 36.000 25.11 0.00 0.00 2.66
92 93 5.283060 AGCGCTTACTAAATGACAAGTTG 57.717 39.130 2.64 0.00 0.00 3.16
94 95 5.080068 GCGCTTACTAAATGACAAGTTGAC 58.920 41.667 10.54 3.81 0.00 3.18
95 96 5.107065 GCGCTTACTAAATGACAAGTTGACT 60.107 40.000 10.54 0.00 0.00 3.41
96 97 6.565999 GCGCTTACTAAATGACAAGTTGACTT 60.566 38.462 10.54 0.00 36.45 3.01
98 99 8.656849 CGCTTACTAAATGACAAGTTGACTTAT 58.343 33.333 10.54 0.00 34.28 1.73
99 100 9.974750 GCTTACTAAATGACAAGTTGACTTATC 57.025 33.333 10.54 0.00 34.28 1.75
103 104 5.886960 AATGACAAGTTGACTTATCTGGC 57.113 39.130 10.54 0.00 31.05 4.85
106 107 4.065088 GACAAGTTGACTTATCTGGCACA 58.935 43.478 10.54 0.00 34.28 4.57
108 109 3.077359 AAGTTGACTTATCTGGCACAGC 58.923 45.455 0.00 0.00 45.29 4.40
109 110 4.415828 AAGTTGACTTATCTGGCACAGCG 61.416 47.826 0.00 0.00 45.29 5.18
135 136 3.733960 CGGTCGGCTCGTGTGAGA 61.734 66.667 0.00 0.00 45.57 3.27
136 137 2.179517 GGTCGGCTCGTGTGAGAG 59.820 66.667 0.00 0.00 45.57 3.20
137 138 2.179517 GTCGGCTCGTGTGAGAGG 59.820 66.667 0.00 0.00 45.57 3.69
138 139 3.062466 TCGGCTCGTGTGAGAGGG 61.062 66.667 0.00 0.00 45.57 4.30
139 140 4.803426 CGGCTCGTGTGAGAGGGC 62.803 72.222 0.00 0.00 45.57 5.19
140 141 4.803426 GGCTCGTGTGAGAGGGCG 62.803 72.222 0.00 0.00 45.57 6.13
165 166 2.962253 GAATCCCCTTCGCTCGCG 60.962 66.667 0.00 0.00 41.35 5.87
189 195 5.458779 GCGCACTGTTTTTGTTTCTCTTATT 59.541 36.000 0.30 0.00 0.00 1.40
191 197 7.464045 GCGCACTGTTTTTGTTTCTCTTATTTT 60.464 33.333 0.30 0.00 0.00 1.82
237 243 4.148838 TGGCCCACTATAATATTTGCCAC 58.851 43.478 0.00 0.00 42.32 5.01
253 259 2.746904 TGCCACACAGATTATTTGACCG 59.253 45.455 0.00 0.00 0.00 4.79
258 264 4.093408 CACACAGATTATTTGACCGGTCAG 59.907 45.833 34.25 23.00 41.13 3.51
301 307 8.978539 GTCAACAGATTTCAATACGATGCTATA 58.021 33.333 0.00 0.00 0.00 1.31
310 316 0.237761 ACGATGCTATACGGCGAGTC 59.762 55.000 16.62 0.00 34.52 3.36
335 341 3.444742 TGACCGTATAATCACCACTTCGT 59.555 43.478 0.00 0.00 0.00 3.85
336 342 3.777478 ACCGTATAATCACCACTTCGTG 58.223 45.455 0.00 0.00 34.93 4.35
337 343 3.194116 ACCGTATAATCACCACTTCGTGT 59.806 43.478 0.00 0.00 35.18 4.49
343 349 7.322938 CGTATAATCACCACTTCGTGTATACAG 59.677 40.741 5.62 1.00 32.73 2.74
364 370 5.517770 ACAGTGACCGTAATAAGCGTATTTC 59.482 40.000 10.20 4.74 32.10 2.17
367 373 6.591062 AGTGACCGTAATAAGCGTATTTCAAA 59.409 34.615 10.20 0.00 32.10 2.69
377 383 6.560253 AAGCGTATTTCAAAGTTCAGTGAT 57.440 33.333 0.00 0.00 0.00 3.06
384 390 7.905604 ATTTCAAAGTTCAGTGATCGTATCA 57.094 32.000 0.00 0.00 36.84 2.15
387 393 6.398095 TCAAAGTTCAGTGATCGTATCATGT 58.602 36.000 0.00 0.00 42.04 3.21
393 399 4.267690 TCAGTGATCGTATCATGTTTTCGC 59.732 41.667 0.00 0.00 42.04 4.70
404 410 7.480229 CGTATCATGTTTTCGCTTCAAATACAA 59.520 33.333 0.00 0.00 0.00 2.41
411 417 4.678509 TCGCTTCAAATACAATGACCAC 57.321 40.909 0.00 0.00 0.00 4.16
417 423 3.435327 TCAAATACAATGACCACGAGTGC 59.565 43.478 0.00 0.00 0.00 4.40
426 432 3.937814 TGACCACGAGTGCATTTATCTT 58.062 40.909 0.00 0.00 0.00 2.40
481 490 3.306166 CACTACCACTTGTGTATAAGCGC 59.694 47.826 0.00 0.00 0.00 5.92
482 491 1.355971 ACCACTTGTGTATAAGCGCG 58.644 50.000 0.00 0.00 0.00 6.86
484 493 0.999406 CACTTGTGTATAAGCGCGCT 59.001 50.000 31.32 31.32 0.00 5.92
485 494 1.005975 CACTTGTGTATAAGCGCGCTC 60.006 52.381 36.57 22.45 0.00 5.03
487 496 1.143373 TTGTGTATAAGCGCGCTCGG 61.143 55.000 36.57 0.00 35.95 4.63
488 497 2.657296 TGTATAAGCGCGCTCGGC 60.657 61.111 36.57 23.60 35.95 5.54
499 508 3.119096 GCTCGGCGTCTGTTTCCC 61.119 66.667 6.85 0.00 0.00 3.97
500 509 2.657237 CTCGGCGTCTGTTTCCCT 59.343 61.111 6.85 0.00 0.00 4.20
501 510 1.004918 CTCGGCGTCTGTTTCCCTT 60.005 57.895 6.85 0.00 0.00 3.95
502 511 1.005394 TCGGCGTCTGTTTCCCTTC 60.005 57.895 6.85 0.00 0.00 3.46
503 512 2.033194 CGGCGTCTGTTTCCCTTCC 61.033 63.158 0.00 0.00 0.00 3.46
504 513 1.072505 GGCGTCTGTTTCCCTTCCA 59.927 57.895 0.00 0.00 0.00 3.53
507 516 1.001633 GCGTCTGTTTCCCTTCCACTA 59.998 52.381 0.00 0.00 0.00 2.74
508 517 2.931320 GCGTCTGTTTCCCTTCCACTAG 60.931 54.545 0.00 0.00 0.00 2.57
509 518 2.701107 GTCTGTTTCCCTTCCACTAGC 58.299 52.381 0.00 0.00 0.00 3.42
510 519 2.038557 GTCTGTTTCCCTTCCACTAGCA 59.961 50.000 0.00 0.00 0.00 3.49
513 522 1.064003 TTTCCCTTCCACTAGCAGCA 58.936 50.000 0.00 0.00 0.00 4.41
514 523 1.064003 TTCCCTTCCACTAGCAGCAA 58.936 50.000 0.00 0.00 0.00 3.91
515 524 0.324943 TCCCTTCCACTAGCAGCAAC 59.675 55.000 0.00 0.00 0.00 4.17
517 526 0.326264 CCTTCCACTAGCAGCAACCT 59.674 55.000 0.00 0.00 0.00 3.50
520 529 0.324943 TCCACTAGCAGCAACCTTCC 59.675 55.000 0.00 0.00 0.00 3.46
522 531 1.677217 CCACTAGCAGCAACCTTCCTC 60.677 57.143 0.00 0.00 0.00 3.71
523 532 0.247736 ACTAGCAGCAACCTTCCTCG 59.752 55.000 0.00 0.00 0.00 4.63
526 535 1.743252 GCAGCAACCTTCCTCGAGG 60.743 63.158 26.32 26.32 42.75 4.63
527 536 1.743252 CAGCAACCTTCCTCGAGGC 60.743 63.158 27.39 12.91 40.65 4.70
528 537 2.815647 GCAACCTTCCTCGAGGCG 60.816 66.667 27.39 18.76 40.65 5.52
530 539 3.311110 AACCTTCCTCGAGGCGCA 61.311 61.111 27.39 11.85 40.65 6.09
531 540 2.879233 AACCTTCCTCGAGGCGCAA 61.879 57.895 27.39 14.89 40.65 4.85
532 541 2.510238 CCTTCCTCGAGGCGCAAG 60.510 66.667 27.39 22.87 43.44 4.01
533 542 2.510238 CTTCCTCGAGGCGCAAGG 60.510 66.667 27.39 10.43 38.28 3.61
538 547 3.997064 CTCGAGGCGCAAGGTGGAG 62.997 68.421 10.83 2.77 38.28 3.86
540 549 4.704833 GAGGCGCAAGGTGGAGCA 62.705 66.667 10.83 0.00 35.09 4.26
541 550 4.711949 AGGCGCAAGGTGGAGCAG 62.712 66.667 10.83 0.00 35.09 4.24
543 552 2.047274 GCGCAAGGTGGAGCAGTA 60.047 61.111 0.30 0.00 33.48 2.74
544 553 2.391389 GCGCAAGGTGGAGCAGTAC 61.391 63.158 0.30 0.00 33.48 2.73
548 557 0.317160 CAAGGTGGAGCAGTACGACA 59.683 55.000 0.00 0.00 0.00 4.35
549 558 0.603569 AAGGTGGAGCAGTACGACAG 59.396 55.000 0.00 0.00 0.00 3.51
550 559 0.251209 AGGTGGAGCAGTACGACAGA 60.251 55.000 0.00 0.00 0.00 3.41
551 560 0.171455 GGTGGAGCAGTACGACAGAG 59.829 60.000 0.00 0.00 0.00 3.35
552 561 1.166129 GTGGAGCAGTACGACAGAGA 58.834 55.000 0.00 0.00 0.00 3.10
554 563 1.813178 TGGAGCAGTACGACAGAGAAG 59.187 52.381 0.00 0.00 0.00 2.85
555 564 1.813786 GGAGCAGTACGACAGAGAAGT 59.186 52.381 0.00 0.00 0.00 3.01
556 565 2.414824 GGAGCAGTACGACAGAGAAGTG 60.415 54.545 0.00 0.00 0.00 3.16
557 566 2.484651 GAGCAGTACGACAGAGAAGTGA 59.515 50.000 0.00 0.00 0.00 3.41
558 567 3.085533 AGCAGTACGACAGAGAAGTGAT 58.914 45.455 0.00 0.00 0.00 3.06
560 569 3.119814 GCAGTACGACAGAGAAGTGATCA 60.120 47.826 0.00 0.00 0.00 2.92
561 570 4.616143 GCAGTACGACAGAGAAGTGATCAA 60.616 45.833 0.00 0.00 0.00 2.57
562 571 5.461526 CAGTACGACAGAGAAGTGATCAAA 58.538 41.667 0.00 0.00 0.00 2.69
563 572 5.920840 CAGTACGACAGAGAAGTGATCAAAA 59.079 40.000 0.00 0.00 0.00 2.44
565 574 6.809196 AGTACGACAGAGAAGTGATCAAAATC 59.191 38.462 0.00 0.00 0.00 2.17
566 575 5.541845 ACGACAGAGAAGTGATCAAAATCA 58.458 37.500 0.00 0.00 39.63 2.57
568 577 6.483307 ACGACAGAGAAGTGATCAAAATCAAA 59.517 34.615 0.00 0.00 43.42 2.69
569 578 7.012327 ACGACAGAGAAGTGATCAAAATCAAAA 59.988 33.333 0.00 0.00 43.42 2.44
571 580 7.144000 ACAGAGAAGTGATCAAAATCAAAAGC 58.856 34.615 0.00 0.00 43.42 3.51
572 581 7.143340 CAGAGAAGTGATCAAAATCAAAAGCA 58.857 34.615 0.00 0.00 43.42 3.91
573 582 7.650504 CAGAGAAGTGATCAAAATCAAAAGCAA 59.349 33.333 0.00 0.00 43.42 3.91
574 583 8.199449 AGAGAAGTGATCAAAATCAAAAGCAAA 58.801 29.630 0.00 0.00 43.42 3.68
576 585 7.765360 AGAAGTGATCAAAATCAAAAGCAAACA 59.235 29.630 0.00 0.00 43.42 2.83
577 586 8.441312 AAGTGATCAAAATCAAAAGCAAACAT 57.559 26.923 0.00 0.00 43.42 2.71
578 587 7.857569 AGTGATCAAAATCAAAAGCAAACATG 58.142 30.769 0.00 0.00 43.42 3.21
579 588 7.711772 AGTGATCAAAATCAAAAGCAAACATGA 59.288 29.630 0.00 0.00 43.42 3.07
581 590 6.271396 TCAAAATCAAAAGCAAACATGACG 57.729 33.333 0.00 0.00 0.00 4.35
582 591 6.038985 TCAAAATCAAAAGCAAACATGACGA 58.961 32.000 0.00 0.00 0.00 4.20
583 592 6.533012 TCAAAATCAAAAGCAAACATGACGAA 59.467 30.769 0.00 0.00 0.00 3.85
584 593 5.888412 AATCAAAAGCAAACATGACGAAC 57.112 34.783 0.00 0.00 0.00 3.95
585 594 4.362932 TCAAAAGCAAACATGACGAACA 57.637 36.364 0.00 0.00 0.00 3.18
586 595 4.738124 TCAAAAGCAAACATGACGAACAA 58.262 34.783 0.00 0.00 0.00 2.83
588 597 4.630894 AAAGCAAACATGACGAACAAGA 57.369 36.364 0.00 0.00 0.00 3.02
589 598 4.630894 AAGCAAACATGACGAACAAGAA 57.369 36.364 0.00 0.00 0.00 2.52
590 599 4.214980 AGCAAACATGACGAACAAGAAG 57.785 40.909 0.00 0.00 0.00 2.85
592 601 3.300009 CAAACATGACGAACAAGAAGCC 58.700 45.455 0.00 0.00 0.00 4.35
593 602 2.550830 ACATGACGAACAAGAAGCCT 57.449 45.000 0.00 0.00 0.00 4.58
594 603 3.678056 ACATGACGAACAAGAAGCCTA 57.322 42.857 0.00 0.00 0.00 3.93
596 605 3.006967 ACATGACGAACAAGAAGCCTACT 59.993 43.478 0.00 0.00 0.00 2.57
598 607 2.251893 GACGAACAAGAAGCCTACTCG 58.748 52.381 0.00 0.00 0.00 4.18
599 608 1.067776 ACGAACAAGAAGCCTACTCGG 60.068 52.381 0.00 0.00 0.00 4.63
600 609 1.067776 CGAACAAGAAGCCTACTCGGT 60.068 52.381 0.00 0.00 34.25 4.69
602 611 0.896226 ACAAGAAGCCTACTCGGTCC 59.104 55.000 0.00 0.00 34.25 4.46
603 612 1.187087 CAAGAAGCCTACTCGGTCCT 58.813 55.000 0.00 0.00 34.25 3.85
604 613 1.135333 CAAGAAGCCTACTCGGTCCTC 59.865 57.143 0.00 0.00 34.25 3.71
605 614 0.396001 AGAAGCCTACTCGGTCCTCC 60.396 60.000 0.00 0.00 34.25 4.30
607 616 0.396001 AAGCCTACTCGGTCCTCCTC 60.396 60.000 0.00 0.00 34.25 3.71
608 617 2.188161 GCCTACTCGGTCCTCCTCG 61.188 68.421 0.00 0.00 34.25 4.63
609 618 1.526455 CCTACTCGGTCCTCCTCGG 60.526 68.421 0.00 0.00 0.00 4.63
610 619 2.124403 TACTCGGTCCTCCTCGGC 60.124 66.667 0.00 0.00 0.00 5.54
651 660 1.648720 CGCATTGGGTTATCCTGCG 59.351 57.895 3.83 3.83 44.75 5.18
653 662 1.648720 CATTGGGTTATCCTGCGCG 59.351 57.895 0.00 0.00 36.20 6.86
654 663 1.525995 ATTGGGTTATCCTGCGCGG 60.526 57.895 9.96 9.96 36.20 6.46
656 665 2.895372 GGGTTATCCTGCGCGGTG 60.895 66.667 16.49 6.93 0.00 4.94
657 666 2.185867 GGTTATCCTGCGCGGTGA 59.814 61.111 16.49 12.49 0.00 4.02
658 667 2.171725 GGTTATCCTGCGCGGTGAC 61.172 63.158 16.49 12.44 0.00 3.67
672 1055 3.588277 GTGACGAACCAGAAGAGCA 57.412 52.632 0.00 0.00 0.00 4.26
692 1075 8.000780 AGAGCACTGTTTTTGTTTCTCTTATT 57.999 30.769 0.00 0.00 0.00 1.40
694 1077 9.087424 GAGCACTGTTTTTGTTTCTCTTATTTT 57.913 29.630 0.00 0.00 0.00 1.82
719 1540 3.792736 GACCCGCATGGCCCACTA 61.793 66.667 0.00 0.00 37.83 2.74
724 1545 1.037030 CCGCATGGCCCACTACAATT 61.037 55.000 0.00 0.00 0.00 2.32
732 1553 2.412870 GCCCACTACAATTTTTGCCAC 58.587 47.619 0.00 0.00 0.00 5.01
736 1557 4.437239 CCACTACAATTTTTGCCACACAA 58.563 39.130 0.00 0.00 36.13 3.33
753 2007 5.153513 CACACAAATTATTTGACCGGTCAG 58.846 41.667 34.25 23.00 43.26 3.51
805 2059 0.237761 ACGATGCTATACGGCGAGTC 59.762 55.000 16.62 0.00 34.52 3.36
812 2066 0.462581 TATACGGCGAGTCGGTGACT 60.463 55.000 16.62 0.00 46.42 3.41
830 2520 5.408356 GTGACTGTATAATCACCACTTCGT 58.592 41.667 0.00 0.00 39.49 3.85
866 3881 7.815398 TCGTAATGAGCGTATTTCAAAGTTA 57.185 32.000 0.00 0.00 0.00 2.24
872 3887 7.667043 TGAGCGTATTTCAAAGTTAAGTGAT 57.333 32.000 0.00 0.00 0.00 3.06
882 3897 6.384224 TCAAAGTTAAGTGATCGTATCGTGT 58.616 36.000 0.00 0.00 0.00 4.49
888 4338 2.597305 AGTGATCGTATCGTGTTTTCGC 59.403 45.455 0.00 0.00 0.00 4.70
891 4341 3.676172 TGATCGTATCGTGTTTTCGCTTT 59.324 39.130 0.00 0.00 0.00 3.51
898 4348 6.134404 CGTATCGTGTTTTCGCTTTAAATACG 59.866 38.462 13.85 13.85 45.42 3.06
906 4356 5.459110 TTCGCTTTAAATACGATGACCAC 57.541 39.130 12.53 0.00 35.48 4.16
912 4362 1.922570 AATACGATGACCACGAGTGC 58.077 50.000 0.00 0.00 34.70 4.40
921 4371 3.521560 TGACCACGAGTGCATTTATCTC 58.478 45.455 0.00 0.00 0.00 2.75
922 4372 2.866762 GACCACGAGTGCATTTATCTCC 59.133 50.000 0.00 0.00 0.00 3.71
923 4373 2.236146 ACCACGAGTGCATTTATCTCCA 59.764 45.455 0.00 0.00 0.00 3.86
924 4374 3.118261 ACCACGAGTGCATTTATCTCCAT 60.118 43.478 0.00 0.00 0.00 3.41
925 4375 3.249320 CCACGAGTGCATTTATCTCCATG 59.751 47.826 0.00 0.00 0.00 3.66
926 4376 3.873361 CACGAGTGCATTTATCTCCATGT 59.127 43.478 0.00 0.00 0.00 3.21
927 4377 3.873361 ACGAGTGCATTTATCTCCATGTG 59.127 43.478 0.00 0.00 0.00 3.21
928 4378 4.122046 CGAGTGCATTTATCTCCATGTGA 58.878 43.478 0.00 0.00 0.00 3.58
929 4379 4.753610 CGAGTGCATTTATCTCCATGTGAT 59.246 41.667 0.00 0.00 0.00 3.06
930 4380 5.333875 CGAGTGCATTTATCTCCATGTGATG 60.334 44.000 8.24 0.00 0.00 3.07
931 4381 5.443283 AGTGCATTTATCTCCATGTGATGT 58.557 37.500 8.24 0.00 0.00 3.06
932 4382 5.298527 AGTGCATTTATCTCCATGTGATGTG 59.701 40.000 8.24 6.26 0.00 3.21
933 4383 5.297527 GTGCATTTATCTCCATGTGATGTGA 59.702 40.000 8.24 0.00 0.00 3.58
934 4384 5.529800 TGCATTTATCTCCATGTGATGTGAG 59.470 40.000 8.24 0.00 0.00 3.51
935 4385 5.562307 GCATTTATCTCCATGTGATGTGAGC 60.562 44.000 8.24 4.92 31.68 4.26
936 4386 5.363562 TTTATCTCCATGTGATGTGAGCT 57.636 39.130 8.24 0.00 31.68 4.09
937 4387 6.484364 TTTATCTCCATGTGATGTGAGCTA 57.516 37.500 8.24 0.00 31.68 3.32
938 4388 6.676990 TTATCTCCATGTGATGTGAGCTAT 57.323 37.500 8.24 0.00 31.68 2.97
939 4389 7.781324 TTATCTCCATGTGATGTGAGCTATA 57.219 36.000 8.24 0.00 31.68 1.31
940 4390 5.459536 TCTCCATGTGATGTGAGCTATAC 57.540 43.478 0.00 0.00 31.68 1.47
941 4391 5.143369 TCTCCATGTGATGTGAGCTATACT 58.857 41.667 0.00 0.00 31.68 2.12
942 4392 6.306987 TCTCCATGTGATGTGAGCTATACTA 58.693 40.000 0.00 0.00 31.68 1.82
943 4393 6.950619 TCTCCATGTGATGTGAGCTATACTAT 59.049 38.462 0.00 0.00 31.68 2.12
944 4394 8.109634 TCTCCATGTGATGTGAGCTATACTATA 58.890 37.037 0.00 0.00 31.68 1.31
945 4395 8.286191 TCCATGTGATGTGAGCTATACTATAG 57.714 38.462 0.00 0.00 0.00 1.31
946 4396 7.890655 TCCATGTGATGTGAGCTATACTATAGT 59.109 37.037 10.87 10.87 0.00 2.12
947 4397 9.178758 CCATGTGATGTGAGCTATACTATAGTA 57.821 37.037 14.87 14.87 34.67 1.82
949 4399 9.967451 ATGTGATGTGAGCTATACTATAGTAGT 57.033 33.333 17.31 8.81 42.68 2.73
950 4400 9.220767 TGTGATGTGAGCTATACTATAGTAGTG 57.779 37.037 17.31 12.88 39.81 2.74
951 4401 8.178964 GTGATGTGAGCTATACTATAGTAGTGC 58.821 40.741 22.24 22.24 39.81 4.40
952 4402 8.103935 TGATGTGAGCTATACTATAGTAGTGCT 58.896 37.037 27.93 27.93 41.87 4.40
954 4404 6.879993 TGTGAGCTATACTATAGTAGTGCTCC 59.120 42.308 35.81 30.69 46.72 4.70
955 4405 6.879993 GTGAGCTATACTATAGTAGTGCTCCA 59.120 42.308 35.81 28.37 46.72 3.86
956 4406 6.879993 TGAGCTATACTATAGTAGTGCTCCAC 59.120 42.308 35.81 25.47 46.72 4.02
957 4407 7.256727 TGAGCTATACTATAGTAGTGCTCCACT 60.257 40.741 35.81 21.19 46.72 4.00
958 4408 8.148437 AGCTATACTATAGTAGTGCTCCACTA 57.852 38.462 24.76 9.12 43.46 2.74
966 4416 1.424638 AGTGCTCCACTACCACTTGT 58.575 50.000 0.00 0.00 43.46 3.16
967 4417 1.070758 AGTGCTCCACTACCACTTGTG 59.929 52.381 0.00 0.00 43.46 3.33
968 4418 1.128200 TGCTCCACTACCACTTGTGT 58.872 50.000 0.00 0.00 32.76 3.72
969 4419 2.036733 GTGCTCCACTACCACTTGTGTA 59.963 50.000 0.00 0.00 32.76 2.90
970 4420 2.903784 TGCTCCACTACCACTTGTGTAT 59.096 45.455 0.00 0.00 32.76 2.29
971 4421 4.081862 GTGCTCCACTACCACTTGTGTATA 60.082 45.833 0.00 0.00 32.76 1.47
972 4422 4.528987 TGCTCCACTACCACTTGTGTATAA 59.471 41.667 0.00 0.00 32.76 0.98
973 4423 5.109903 GCTCCACTACCACTTGTGTATAAG 58.890 45.833 0.00 0.00 32.76 1.73
974 4424 5.080969 TCCACTACCACTTGTGTATAAGC 57.919 43.478 0.00 0.00 32.76 3.09
975 4425 3.863424 CCACTACCACTTGTGTATAAGCG 59.137 47.826 0.00 0.00 32.76 4.68
976 4426 3.306166 CACTACCACTTGTGTATAAGCGC 59.694 47.826 0.00 0.00 0.00 5.92
997 4447 0.602905 CTCGGCGTCTGTTTCCCTTT 60.603 55.000 6.85 0.00 0.00 3.11
1008 4458 1.813178 GTTTCCCTTTCCACTAGCAGC 59.187 52.381 0.00 0.00 0.00 5.25
1044 4494 0.317160 CAAGGTGGAGCAGTACGACA 59.683 55.000 0.00 0.00 0.00 4.35
1051 4501 1.813786 GGAGCAGTACGACAGAGAAGT 59.186 52.381 0.00 0.00 0.00 3.01
1323 4773 0.179076 TGATCGAGATGTGCGCCATT 60.179 50.000 4.18 0.00 32.56 3.16
1324 4774 0.234106 GATCGAGATGTGCGCCATTG 59.766 55.000 4.18 3.06 32.56 2.82
1325 4775 1.162181 ATCGAGATGTGCGCCATTGG 61.162 55.000 4.18 0.00 32.56 3.16
1337 4787 2.573083 CCATTGGTGGTGGTGGTGC 61.573 63.158 0.00 0.00 40.83 5.01
1442 4892 1.610673 TGAGAGAGACACCCAGGCC 60.611 63.158 0.00 0.00 0.00 5.19
1476 4927 5.444663 AAGCCTTTCTTTCAGCTTAGTTG 57.555 39.130 0.00 0.00 43.47 3.16
1527 4978 3.550275 TCACTTCGATTTATTCTTCGCCG 59.450 43.478 0.00 0.00 35.39 6.46
1530 4981 3.358707 TCGATTTATTCTTCGCCGCTA 57.641 42.857 0.00 0.00 35.39 4.26
1531 4982 3.305964 TCGATTTATTCTTCGCCGCTAG 58.694 45.455 0.00 0.00 35.39 3.42
1596 5048 7.872163 TTAACTAATTTGTGCTGCAATCTTG 57.128 32.000 2.77 0.00 36.89 3.02
1694 5219 1.522668 TGGGTGAGTCAAAGATTGCG 58.477 50.000 0.00 0.00 0.00 4.85
1715 5267 3.242673 CGTTGTCCCTCGTGATAGTACTC 60.243 52.174 0.00 0.00 0.00 2.59
1757 5309 4.401519 TCCCTCAACACTTAATCTACGAGG 59.598 45.833 0.00 0.00 38.81 4.63
1768 5320 6.320926 ACTTAATCTACGAGGGGAAAGTACTC 59.679 42.308 0.00 0.00 0.00 2.59
1770 5322 2.309755 TCTACGAGGGGAAAGTACTCCA 59.690 50.000 0.00 0.00 37.20 3.86
1773 5325 1.067071 CGAGGGGAAAGTACTCCACAC 60.067 57.143 6.21 0.00 41.88 3.82
1863 5416 3.711348 GCAGCTCGCACCTATGAC 58.289 61.111 3.64 0.00 41.79 3.06
2199 5768 1.270041 GCCTTCCTCGAGGAGCTATTG 60.270 57.143 31.81 18.54 46.36 1.90
2218 5787 2.456577 TGTCCTCGATCAGATCAACCA 58.543 47.619 11.12 0.00 0.00 3.67
2219 5788 2.166459 TGTCCTCGATCAGATCAACCAC 59.834 50.000 11.12 2.55 0.00 4.16
2220 5789 2.166459 GTCCTCGATCAGATCAACCACA 59.834 50.000 11.12 0.00 0.00 4.17
2221 5790 3.033909 TCCTCGATCAGATCAACCACAT 58.966 45.455 11.12 0.00 0.00 3.21
2222 5791 3.452264 TCCTCGATCAGATCAACCACATT 59.548 43.478 11.12 0.00 0.00 2.71
2223 5792 3.558829 CCTCGATCAGATCAACCACATTG 59.441 47.826 11.12 0.00 39.94 2.82
2224 5793 4.186926 CTCGATCAGATCAACCACATTGT 58.813 43.478 11.12 0.00 39.54 2.71
2225 5794 3.934579 TCGATCAGATCAACCACATTGTG 59.065 43.478 9.92 9.92 39.54 3.33
2288 5857 5.414454 TGACATGAAGTAACTTATTGGCACC 59.586 40.000 0.00 0.00 0.00 5.01
2424 6002 2.028112 TGTCCTTGCAAGTTCGCTCTAT 60.028 45.455 24.35 0.00 0.00 1.98
2469 6057 0.035317 AACGGCACTCTCAATCTGCA 59.965 50.000 0.00 0.00 32.20 4.41
2470 6058 0.251354 ACGGCACTCTCAATCTGCAT 59.749 50.000 0.00 0.00 32.20 3.96
2471 6059 0.656259 CGGCACTCTCAATCTGCATG 59.344 55.000 0.00 0.00 32.20 4.06
2472 6060 0.381089 GGCACTCTCAATCTGCATGC 59.619 55.000 11.82 11.82 32.20 4.06
3088 6688 1.488390 AAATAGCTGTGGGCAATGGG 58.512 50.000 0.00 0.00 44.79 4.00
3265 6867 2.667137 GAGTCACTCGAGTTGTTCCTG 58.333 52.381 17.26 2.64 0.00 3.86
3384 6990 2.750712 GCCTAACCGCTTATTTCCACAA 59.249 45.455 0.00 0.00 0.00 3.33
3400 7006 1.066143 CACAACTCTAACCCTGGCGAT 60.066 52.381 0.00 0.00 0.00 4.58
3483 7089 2.038387 AATAACCGGTAGCTTGCCAG 57.962 50.000 8.00 0.00 0.00 4.85
3484 7090 1.200519 ATAACCGGTAGCTTGCCAGA 58.799 50.000 8.00 0.00 0.00 3.86
3485 7091 1.200519 TAACCGGTAGCTTGCCAGAT 58.799 50.000 8.00 0.00 0.00 2.90
3486 7092 1.200519 AACCGGTAGCTTGCCAGATA 58.799 50.000 8.00 0.00 0.00 1.98
3487 7093 0.753262 ACCGGTAGCTTGCCAGATAG 59.247 55.000 4.49 0.00 0.00 2.08
3512 7118 2.050168 CACATGCCCGTGTGTTGC 60.050 61.111 11.50 0.00 43.43 4.17
3528 7134 6.034470 CGTGTGTTGCAATGGGATAATAAAAC 59.966 38.462 0.59 0.00 0.00 2.43
3541 7147 8.719596 TGGGATAATAAAACTACATGCCTCTAA 58.280 33.333 0.00 0.00 0.00 2.10
3549 7155 8.723942 AAAACTACATGCCTCTAACTCAATAG 57.276 34.615 0.00 0.00 0.00 1.73
3560 7166 7.387397 GCCTCTAACTCAATAGAAGAATGGATG 59.613 40.741 0.00 0.00 31.76 3.51
3567 7173 6.595682 TCAATAGAAGAATGGATGAAGACCC 58.404 40.000 0.00 0.00 0.00 4.46
3598 7204 5.749109 GTCCGTATTCTCTAGTTCAACATGG 59.251 44.000 0.00 0.00 0.00 3.66
3599 7205 5.655090 TCCGTATTCTCTAGTTCAACATGGA 59.345 40.000 0.00 0.00 0.00 3.41
3725 7931 8.500753 ACAAAATTGGAAAAACCCTAACTTTC 57.499 30.769 0.00 0.00 38.00 2.62
3864 8072 9.053840 TCAAATATACTTGGTAACGTGAACAAA 57.946 29.630 4.60 0.00 42.51 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.034685 TCCAAGCAGTCCTAAAAAGTAAAAC 57.965 36.000 0.00 0.00 0.00 2.43
3 4 5.642063 CGATCCAAGCAGTCCTAAAAAGTAA 59.358 40.000 0.00 0.00 0.00 2.24
6 7 3.181506 GCGATCCAAGCAGTCCTAAAAAG 60.182 47.826 0.00 0.00 34.19 2.27
8 9 2.027192 AGCGATCCAAGCAGTCCTAAAA 60.027 45.455 0.00 0.00 37.01 1.52
9 10 1.555075 AGCGATCCAAGCAGTCCTAAA 59.445 47.619 0.00 0.00 37.01 1.85
10 11 1.195115 AGCGATCCAAGCAGTCCTAA 58.805 50.000 0.00 0.00 37.01 2.69
11 12 1.134699 CAAGCGATCCAAGCAGTCCTA 60.135 52.381 0.00 0.00 37.01 2.94
12 13 0.392193 CAAGCGATCCAAGCAGTCCT 60.392 55.000 0.00 0.00 37.01 3.85
13 14 0.674895 ACAAGCGATCCAAGCAGTCC 60.675 55.000 0.00 0.00 37.01 3.85
14 15 0.445436 CACAAGCGATCCAAGCAGTC 59.555 55.000 0.00 0.00 37.01 3.51
15 16 0.250467 ACACAAGCGATCCAAGCAGT 60.250 50.000 0.00 0.00 37.01 4.40
16 17 0.167470 CACACAAGCGATCCAAGCAG 59.833 55.000 0.00 0.00 37.01 4.24
17 18 1.855213 GCACACAAGCGATCCAAGCA 61.855 55.000 0.00 0.00 37.01 3.91
18 19 1.154150 GCACACAAGCGATCCAAGC 60.154 57.895 0.00 0.00 0.00 4.01
19 20 0.806868 ATGCACACAAGCGATCCAAG 59.193 50.000 0.00 0.00 37.31 3.61
20 21 1.068402 CAATGCACACAAGCGATCCAA 60.068 47.619 0.00 0.00 37.31 3.53
22 23 0.523072 ACAATGCACACAAGCGATCC 59.477 50.000 0.00 0.00 37.31 3.36
23 24 1.069022 ACACAATGCACACAAGCGATC 60.069 47.619 0.00 0.00 37.31 3.69
24 25 0.953727 ACACAATGCACACAAGCGAT 59.046 45.000 0.00 0.00 37.31 4.58
29 30 3.864003 CACAATTCACACAATGCACACAA 59.136 39.130 0.00 0.00 0.00 3.33
30 31 3.445857 CACAATTCACACAATGCACACA 58.554 40.909 0.00 0.00 0.00 3.72
31 32 2.219216 GCACAATTCACACAATGCACAC 59.781 45.455 0.00 0.00 33.27 3.82
32 33 2.101082 AGCACAATTCACACAATGCACA 59.899 40.909 0.00 0.00 35.51 4.57
33 34 2.473609 CAGCACAATTCACACAATGCAC 59.526 45.455 0.00 0.00 35.51 4.57
34 35 2.101082 ACAGCACAATTCACACAATGCA 59.899 40.909 0.00 0.00 35.51 3.96
35 36 2.746269 ACAGCACAATTCACACAATGC 58.254 42.857 0.00 0.00 0.00 3.56
36 37 6.825284 TTAAACAGCACAATTCACACAATG 57.175 33.333 0.00 0.00 0.00 2.82
37 38 7.011295 CCTTTTAAACAGCACAATTCACACAAT 59.989 33.333 0.00 0.00 0.00 2.71
38 39 6.312426 CCTTTTAAACAGCACAATTCACACAA 59.688 34.615 0.00 0.00 0.00 3.33
39 40 5.809562 CCTTTTAAACAGCACAATTCACACA 59.190 36.000 0.00 0.00 0.00 3.72
40 41 5.810074 ACCTTTTAAACAGCACAATTCACAC 59.190 36.000 0.00 0.00 0.00 3.82
42 43 6.039616 TCACCTTTTAAACAGCACAATTCAC 58.960 36.000 0.00 0.00 0.00 3.18
44 45 6.922957 TCATCACCTTTTAAACAGCACAATTC 59.077 34.615 0.00 0.00 0.00 2.17
45 46 6.815089 TCATCACCTTTTAAACAGCACAATT 58.185 32.000 0.00 0.00 0.00 2.32
47 48 5.843673 TCATCACCTTTTAAACAGCACAA 57.156 34.783 0.00 0.00 0.00 3.33
48 49 5.735922 GCTTCATCACCTTTTAAACAGCACA 60.736 40.000 0.00 0.00 0.00 4.57
49 50 4.681483 GCTTCATCACCTTTTAAACAGCAC 59.319 41.667 0.00 0.00 0.00 4.40
51 52 3.914364 CGCTTCATCACCTTTTAAACAGC 59.086 43.478 0.00 0.00 0.00 4.40
53 54 3.568007 AGCGCTTCATCACCTTTTAAACA 59.432 39.130 2.64 0.00 0.00 2.83
54 55 4.160736 AGCGCTTCATCACCTTTTAAAC 57.839 40.909 2.64 0.00 0.00 2.01
55 56 4.846779 AAGCGCTTCATCACCTTTTAAA 57.153 36.364 18.98 0.00 0.00 1.52
56 57 5.001232 AGTAAGCGCTTCATCACCTTTTAA 58.999 37.500 28.82 0.18 0.00 1.52
57 58 4.575885 AGTAAGCGCTTCATCACCTTTTA 58.424 39.130 28.82 0.42 0.00 1.52
58 59 3.412386 AGTAAGCGCTTCATCACCTTTT 58.588 40.909 28.82 0.00 0.00 2.27
59 60 3.059352 AGTAAGCGCTTCATCACCTTT 57.941 42.857 28.82 0.00 0.00 3.11
60 61 2.770164 AGTAAGCGCTTCATCACCTT 57.230 45.000 28.82 0.87 0.00 3.50
61 62 3.887621 TTAGTAAGCGCTTCATCACCT 57.112 42.857 28.82 15.28 0.00 4.00
62 63 4.570772 TCATTTAGTAAGCGCTTCATCACC 59.429 41.667 28.82 8.70 0.00 4.02
63 64 5.063438 TGTCATTTAGTAAGCGCTTCATCAC 59.937 40.000 28.82 19.23 0.00 3.06
64 65 5.175127 TGTCATTTAGTAAGCGCTTCATCA 58.825 37.500 28.82 5.98 0.00 3.07
65 66 5.718649 TGTCATTTAGTAAGCGCTTCATC 57.281 39.130 28.82 17.78 0.00 2.92
67 68 4.994852 ACTTGTCATTTAGTAAGCGCTTCA 59.005 37.500 28.82 12.24 0.00 3.02
68 69 5.532025 ACTTGTCATTTAGTAAGCGCTTC 57.468 39.130 28.82 17.90 0.00 3.86
69 70 5.468746 TCAACTTGTCATTTAGTAAGCGCTT 59.531 36.000 27.97 27.97 0.00 4.68
70 71 4.994852 TCAACTTGTCATTTAGTAAGCGCT 59.005 37.500 2.64 2.64 0.00 5.92
71 72 5.080068 GTCAACTTGTCATTTAGTAAGCGC 58.920 41.667 0.00 0.00 0.00 5.92
73 74 9.974750 GATAAGTCAACTTGTCATTTAGTAAGC 57.025 33.333 12.96 0.00 41.75 3.09
76 77 9.653287 CCAGATAAGTCAACTTGTCATTTAGTA 57.347 33.333 18.14 0.00 43.70 1.82
78 79 7.119699 TGCCAGATAAGTCAACTTGTCATTTAG 59.880 37.037 18.14 6.34 43.70 1.85
80 81 5.769662 TGCCAGATAAGTCAACTTGTCATTT 59.230 36.000 18.14 0.00 43.70 2.32
83 84 4.065088 GTGCCAGATAAGTCAACTTGTCA 58.935 43.478 18.14 0.14 43.70 3.58
84 85 4.065088 TGTGCCAGATAAGTCAACTTGTC 58.935 43.478 10.61 10.61 42.24 3.18
88 89 2.704572 GCTGTGCCAGATAAGTCAACT 58.295 47.619 6.40 0.00 32.44 3.16
90 91 1.675714 CCGCTGTGCCAGATAAGTCAA 60.676 52.381 6.40 0.00 32.44 3.18
91 92 0.108186 CCGCTGTGCCAGATAAGTCA 60.108 55.000 6.40 0.00 32.44 3.41
92 93 0.108138 ACCGCTGTGCCAGATAAGTC 60.108 55.000 6.40 0.00 32.44 3.01
94 95 1.009829 GAACCGCTGTGCCAGATAAG 58.990 55.000 6.40 0.00 32.44 1.73
95 96 0.392461 GGAACCGCTGTGCCAGATAA 60.392 55.000 0.00 0.00 40.38 1.75
96 97 1.220749 GGAACCGCTGTGCCAGATA 59.779 57.895 0.00 0.00 40.38 1.98
98 99 4.680237 CGGAACCGCTGTGCCAGA 62.680 66.667 6.06 0.00 40.75 3.86
118 119 3.669036 CTCTCACACGAGCCGACCG 62.669 68.421 1.50 0.00 39.30 4.79
119 120 2.179517 CTCTCACACGAGCCGACC 59.820 66.667 1.50 0.00 39.30 4.79
120 121 2.179517 CCTCTCACACGAGCCGAC 59.820 66.667 1.50 0.00 39.30 4.79
122 123 4.803426 GCCCTCTCACACGAGCCG 62.803 72.222 0.00 0.00 39.30 5.52
123 124 4.803426 CGCCCTCTCACACGAGCC 62.803 72.222 0.00 0.00 39.30 4.70
125 126 4.803426 GGCGCCCTCTCACACGAG 62.803 72.222 18.11 0.00 40.98 4.18
134 135 4.832608 ATTCGAACCGGCGCCCTC 62.833 66.667 23.46 14.23 0.00 4.30
135 136 4.832608 GATTCGAACCGGCGCCCT 62.833 66.667 23.46 5.23 0.00 5.19
139 140 3.675619 AAGGGGATTCGAACCGGCG 62.676 63.158 0.00 0.00 0.00 6.46
140 141 1.818363 GAAGGGGATTCGAACCGGC 60.818 63.158 0.00 0.00 0.00 6.13
141 142 4.534401 GAAGGGGATTCGAACCGG 57.466 61.111 0.00 0.00 0.00 5.28
164 165 1.512771 GAGAAACAAAAACAGTGCGCG 59.487 47.619 0.00 0.00 0.00 6.86
165 166 2.797491 AGAGAAACAAAAACAGTGCGC 58.203 42.857 0.00 0.00 0.00 6.09
189 195 5.070001 CCTGTCAGTGGGTCAAGAAATAAA 58.930 41.667 0.00 0.00 0.00 1.40
191 197 3.559171 GCCTGTCAGTGGGTCAAGAAATA 60.559 47.826 0.00 0.00 0.00 1.40
237 243 3.063997 GCTGACCGGTCAAATAATCTGTG 59.936 47.826 35.36 21.16 39.39 3.66
253 259 0.807496 GTCAAATGGCTCTGCTGACC 59.193 55.000 0.00 0.00 32.10 4.02
258 264 0.807496 GACCAGTCAAATGGCTCTGC 59.193 55.000 0.00 0.00 44.80 4.26
282 288 5.498700 CGCCGTATAGCATCGTATTGAAATC 60.499 44.000 0.00 0.00 0.00 2.17
330 336 3.482722 ACGGTCACTGTATACACGAAG 57.517 47.619 16.80 9.82 0.00 3.79
335 341 5.066375 ACGCTTATTACGGTCACTGTATACA 59.934 40.000 5.25 5.25 34.00 2.29
336 342 5.514279 ACGCTTATTACGGTCACTGTATAC 58.486 41.667 0.00 0.00 34.00 1.47
337 343 5.756195 ACGCTTATTACGGTCACTGTATA 57.244 39.130 0.00 0.00 34.00 1.47
343 349 5.954434 TGAAATACGCTTATTACGGTCAC 57.046 39.130 0.00 0.00 34.00 3.67
364 370 6.653273 ACATGATACGATCACTGAACTTTG 57.347 37.500 0.00 0.00 43.01 2.77
367 373 6.035005 CGAAAACATGATACGATCACTGAACT 59.965 38.462 0.00 0.00 43.01 3.01
377 383 5.599359 TTTGAAGCGAAAACATGATACGA 57.401 34.783 0.00 0.00 0.00 3.43
384 390 6.586082 GGTCATTGTATTTGAAGCGAAAACAT 59.414 34.615 0.00 0.00 0.00 2.71
387 393 5.918011 GTGGTCATTGTATTTGAAGCGAAAA 59.082 36.000 0.00 0.00 0.00 2.29
393 399 5.621422 CACTCGTGGTCATTGTATTTGAAG 58.379 41.667 0.00 0.00 0.00 3.02
404 410 4.142609 AGATAAATGCACTCGTGGTCAT 57.857 40.909 0.00 0.00 0.00 3.06
411 417 7.585210 CACATCACATTAAGATAAATGCACTCG 59.415 37.037 0.00 0.00 39.93 4.18
482 491 3.119096 GGGAAACAGACGCCGAGC 61.119 66.667 0.00 0.00 0.00 5.03
484 493 1.005394 GAAGGGAAACAGACGCCGA 60.005 57.895 0.00 0.00 0.00 5.54
485 494 2.033194 GGAAGGGAAACAGACGCCG 61.033 63.158 0.00 0.00 0.00 6.46
487 496 0.250338 AGTGGAAGGGAAACAGACGC 60.250 55.000 0.00 0.00 0.00 5.19
488 497 2.931320 GCTAGTGGAAGGGAAACAGACG 60.931 54.545 0.00 0.00 0.00 4.18
489 498 2.038557 TGCTAGTGGAAGGGAAACAGAC 59.961 50.000 0.00 0.00 0.00 3.51
490 499 2.303022 CTGCTAGTGGAAGGGAAACAGA 59.697 50.000 0.00 0.00 0.00 3.41
493 502 1.271379 TGCTGCTAGTGGAAGGGAAAC 60.271 52.381 0.00 0.00 0.00 2.78
494 503 1.064003 TGCTGCTAGTGGAAGGGAAA 58.936 50.000 0.00 0.00 0.00 3.13
495 504 1.064003 TTGCTGCTAGTGGAAGGGAA 58.936 50.000 0.00 0.00 0.00 3.97
496 505 0.324943 GTTGCTGCTAGTGGAAGGGA 59.675 55.000 0.00 0.00 0.00 4.20
498 507 0.326264 AGGTTGCTGCTAGTGGAAGG 59.674 55.000 0.00 0.00 0.00 3.46
499 508 2.079925 GAAGGTTGCTGCTAGTGGAAG 58.920 52.381 0.00 0.00 0.00 3.46
500 509 1.271379 GGAAGGTTGCTGCTAGTGGAA 60.271 52.381 0.00 0.00 0.00 3.53
501 510 0.324943 GGAAGGTTGCTGCTAGTGGA 59.675 55.000 0.00 0.00 0.00 4.02
502 511 0.326264 AGGAAGGTTGCTGCTAGTGG 59.674 55.000 0.00 0.00 0.00 4.00
503 512 1.731720 GAGGAAGGTTGCTGCTAGTG 58.268 55.000 0.00 0.00 0.00 2.74
504 513 0.247736 CGAGGAAGGTTGCTGCTAGT 59.752 55.000 0.00 0.00 0.00 2.57
507 516 1.294780 CTCGAGGAAGGTTGCTGCT 59.705 57.895 3.91 0.00 0.00 4.24
508 517 1.743252 CCTCGAGGAAGGTTGCTGC 60.743 63.158 28.21 0.00 37.39 5.25
509 518 1.743252 GCCTCGAGGAAGGTTGCTG 60.743 63.158 35.69 4.55 38.79 4.41
510 519 2.665603 GCCTCGAGGAAGGTTGCT 59.334 61.111 35.69 0.00 38.79 3.91
513 522 2.788191 CTTGCGCCTCGAGGAAGGTT 62.788 60.000 35.69 0.00 38.79 3.50
514 523 3.302347 CTTGCGCCTCGAGGAAGGT 62.302 63.158 35.69 0.00 38.79 3.50
515 524 2.510238 CTTGCGCCTCGAGGAAGG 60.510 66.667 35.69 22.40 39.62 3.46
520 529 3.997064 CTCCACCTTGCGCCTCGAG 62.997 68.421 4.18 5.13 0.00 4.04
523 532 4.704833 TGCTCCACCTTGCGCCTC 62.705 66.667 4.18 0.00 0.00 4.70
526 535 2.047274 TACTGCTCCACCTTGCGC 60.047 61.111 0.00 0.00 0.00 6.09
527 536 2.094659 CGTACTGCTCCACCTTGCG 61.095 63.158 0.00 0.00 0.00 4.85
528 537 1.014564 GTCGTACTGCTCCACCTTGC 61.015 60.000 0.00 0.00 0.00 4.01
530 539 0.603569 CTGTCGTACTGCTCCACCTT 59.396 55.000 0.00 0.00 0.00 3.50
531 540 0.251209 TCTGTCGTACTGCTCCACCT 60.251 55.000 0.00 0.00 0.00 4.00
532 541 0.171455 CTCTGTCGTACTGCTCCACC 59.829 60.000 0.00 0.00 0.00 4.61
533 542 1.166129 TCTCTGTCGTACTGCTCCAC 58.834 55.000 0.00 0.00 0.00 4.02
536 545 2.484651 TCACTTCTCTGTCGTACTGCTC 59.515 50.000 0.00 0.00 0.00 4.26
538 547 2.991434 TCACTTCTCTGTCGTACTGC 57.009 50.000 0.00 0.00 0.00 4.40
539 548 4.686839 TGATCACTTCTCTGTCGTACTG 57.313 45.455 0.00 0.00 0.00 2.74
540 549 5.707242 TTTGATCACTTCTCTGTCGTACT 57.293 39.130 0.00 0.00 0.00 2.73
541 550 6.586463 TGATTTTGATCACTTCTCTGTCGTAC 59.414 38.462 0.00 0.00 0.00 3.67
542 551 6.687604 TGATTTTGATCACTTCTCTGTCGTA 58.312 36.000 0.00 0.00 0.00 3.43
543 552 5.541845 TGATTTTGATCACTTCTCTGTCGT 58.458 37.500 0.00 0.00 0.00 4.34
544 553 6.471976 TTGATTTTGATCACTTCTCTGTCG 57.528 37.500 0.00 0.00 0.00 4.35
548 557 7.281040 TGCTTTTGATTTTGATCACTTCTCT 57.719 32.000 0.00 0.00 0.00 3.10
549 558 7.935338 TTGCTTTTGATTTTGATCACTTCTC 57.065 32.000 0.00 0.00 0.00 2.87
550 559 7.765360 TGTTTGCTTTTGATTTTGATCACTTCT 59.235 29.630 0.00 0.00 0.00 2.85
551 560 7.908230 TGTTTGCTTTTGATTTTGATCACTTC 58.092 30.769 0.00 0.00 0.00 3.01
552 561 7.846644 TGTTTGCTTTTGATTTTGATCACTT 57.153 28.000 0.00 0.00 0.00 3.16
554 563 7.795272 GTCATGTTTGCTTTTGATTTTGATCAC 59.205 33.333 0.00 0.00 0.00 3.06
555 564 7.306690 CGTCATGTTTGCTTTTGATTTTGATCA 60.307 33.333 0.00 0.00 0.00 2.92
556 565 7.005380 CGTCATGTTTGCTTTTGATTTTGATC 58.995 34.615 0.00 0.00 0.00 2.92
557 566 6.700960 TCGTCATGTTTGCTTTTGATTTTGAT 59.299 30.769 0.00 0.00 0.00 2.57
558 567 6.038985 TCGTCATGTTTGCTTTTGATTTTGA 58.961 32.000 0.00 0.00 0.00 2.69
560 569 6.312426 TGTTCGTCATGTTTGCTTTTGATTTT 59.688 30.769 0.00 0.00 0.00 1.82
561 570 5.809562 TGTTCGTCATGTTTGCTTTTGATTT 59.190 32.000 0.00 0.00 0.00 2.17
562 571 5.347342 TGTTCGTCATGTTTGCTTTTGATT 58.653 33.333 0.00 0.00 0.00 2.57
563 572 4.930963 TGTTCGTCATGTTTGCTTTTGAT 58.069 34.783 0.00 0.00 0.00 2.57
565 574 4.797868 TCTTGTTCGTCATGTTTGCTTTTG 59.202 37.500 0.00 0.00 0.00 2.44
566 575 4.992688 TCTTGTTCGTCATGTTTGCTTTT 58.007 34.783 0.00 0.00 0.00 2.27
568 577 4.601019 CTTCTTGTTCGTCATGTTTGCTT 58.399 39.130 0.00 0.00 0.00 3.91
569 578 3.548818 GCTTCTTGTTCGTCATGTTTGCT 60.549 43.478 0.00 0.00 0.00 3.91
571 580 3.003689 AGGCTTCTTGTTCGTCATGTTTG 59.996 43.478 0.00 0.00 0.00 2.93
572 581 3.214328 AGGCTTCTTGTTCGTCATGTTT 58.786 40.909 0.00 0.00 0.00 2.83
573 582 2.851195 AGGCTTCTTGTTCGTCATGTT 58.149 42.857 0.00 0.00 0.00 2.71
574 583 2.550830 AGGCTTCTTGTTCGTCATGT 57.449 45.000 0.00 0.00 0.00 3.21
576 585 3.673594 CGAGTAGGCTTCTTGTTCGTCAT 60.674 47.826 0.00 0.00 0.00 3.06
577 586 2.351447 CGAGTAGGCTTCTTGTTCGTCA 60.351 50.000 0.00 0.00 0.00 4.35
578 587 2.251893 CGAGTAGGCTTCTTGTTCGTC 58.748 52.381 0.00 0.00 0.00 4.20
579 588 1.067776 CCGAGTAGGCTTCTTGTTCGT 60.068 52.381 7.51 0.00 0.00 3.85
581 590 2.608268 GACCGAGTAGGCTTCTTGTTC 58.392 52.381 7.51 0.00 46.52 3.18
582 591 1.275573 GGACCGAGTAGGCTTCTTGTT 59.724 52.381 7.51 0.00 46.52 2.83
583 592 0.896226 GGACCGAGTAGGCTTCTTGT 59.104 55.000 7.51 2.88 46.52 3.16
584 593 1.135333 GAGGACCGAGTAGGCTTCTTG 59.865 57.143 0.00 0.00 46.52 3.02
585 594 1.476477 GAGGACCGAGTAGGCTTCTT 58.524 55.000 0.00 0.00 46.52 2.52
586 595 0.396001 GGAGGACCGAGTAGGCTTCT 60.396 60.000 0.00 0.00 46.52 2.85
588 597 0.396001 GAGGAGGACCGAGTAGGCTT 60.396 60.000 0.00 0.00 46.52 4.35
589 598 1.227946 GAGGAGGACCGAGTAGGCT 59.772 63.158 0.00 0.00 46.52 4.58
590 599 2.188161 CGAGGAGGACCGAGTAGGC 61.188 68.421 0.00 0.00 46.52 3.93
592 601 2.188161 GCCGAGGAGGACCGAGTAG 61.188 68.421 0.00 0.00 45.00 2.57
593 602 2.124403 GCCGAGGAGGACCGAGTA 60.124 66.667 0.00 0.00 45.00 2.59
632 641 1.785041 CGCAGGATAACCCAATGCGG 61.785 60.000 14.07 0.00 46.91 5.69
634 643 1.360192 GCGCAGGATAACCCAATGC 59.640 57.895 0.30 0.00 37.41 3.56
637 646 2.124901 CCGCGCAGGATAACCCAA 60.125 61.111 8.75 0.00 45.00 4.12
640 649 2.171725 GTCACCGCGCAGGATAACC 61.172 63.158 22.10 4.53 45.00 2.85
641 650 2.514013 CGTCACCGCGCAGGATAAC 61.514 63.158 22.10 15.03 45.00 1.89
642 651 2.202690 CGTCACCGCGCAGGATAA 60.203 61.111 22.10 6.60 45.00 1.75
643 652 2.702788 TTCGTCACCGCGCAGGATA 61.703 57.895 22.10 8.71 45.00 2.59
644 653 4.063967 TTCGTCACCGCGCAGGAT 62.064 61.111 22.10 6.45 45.00 3.24
654 663 1.140816 GTGCTCTTCTGGTTCGTCAC 58.859 55.000 0.00 0.00 0.00 3.67
656 665 1.269831 ACAGTGCTCTTCTGGTTCGTC 60.270 52.381 0.00 0.00 37.25 4.20
657 666 0.753262 ACAGTGCTCTTCTGGTTCGT 59.247 50.000 0.00 0.00 37.25 3.85
658 667 1.871080 AACAGTGCTCTTCTGGTTCG 58.129 50.000 0.00 0.00 37.25 3.95
659 668 4.142381 ACAAAAACAGTGCTCTTCTGGTTC 60.142 41.667 0.00 0.00 41.22 3.62
660 669 3.763897 ACAAAAACAGTGCTCTTCTGGTT 59.236 39.130 0.00 0.00 43.48 3.67
662 671 4.376340 AACAAAAACAGTGCTCTTCTGG 57.624 40.909 0.00 0.00 37.25 3.86
663 672 5.644644 AGAAACAAAAACAGTGCTCTTCTG 58.355 37.500 0.00 0.00 38.68 3.02
666 675 5.904362 AGAGAAACAAAAACAGTGCTCTT 57.096 34.783 0.00 0.00 31.54 2.85
667 676 5.904362 AAGAGAAACAAAAACAGTGCTCT 57.096 34.783 0.00 0.00 34.82 4.09
668 677 8.634475 AAATAAGAGAAACAAAAACAGTGCTC 57.366 30.769 0.00 0.00 0.00 4.26
692 1075 2.165437 GCCATGCGGGTCAAGAAATAAA 59.835 45.455 0.00 0.00 39.65 1.40
694 1077 1.388547 GCCATGCGGGTCAAGAAATA 58.611 50.000 0.00 0.00 39.65 1.40
732 1553 4.165779 GCTGACCGGTCAAATAATTTGTG 58.834 43.478 35.36 21.16 41.36 3.33
736 1557 3.941483 CTCTGCTGACCGGTCAAATAATT 59.059 43.478 35.36 0.00 39.39 1.40
753 2007 0.807496 GACCAGTCAAATGGCTCTGC 59.193 55.000 0.00 0.00 44.80 4.26
777 2031 6.252015 TCGCCGTATAGCATCGTATTAAAATC 59.748 38.462 0.00 0.00 0.00 2.17
782 2036 3.686241 ACTCGCCGTATAGCATCGTATTA 59.314 43.478 0.00 0.00 0.00 0.98
849 2539 6.895040 CGATCACTTAACTTTGAAATACGCTC 59.105 38.462 0.00 0.00 0.00 5.03
859 3874 6.627690 ACACGATACGATCACTTAACTTTG 57.372 37.500 0.00 0.00 0.00 2.77
866 3881 3.060363 GCGAAAACACGATACGATCACTT 59.940 43.478 0.00 0.00 35.09 3.16
872 3887 5.573296 TTTAAAGCGAAAACACGATACGA 57.427 34.783 0.00 0.00 35.09 3.43
882 3897 6.308675 GTGGTCATCGTATTTAAAGCGAAAA 58.691 36.000 17.49 9.02 38.17 2.29
888 4338 5.500290 GCACTCGTGGTCATCGTATTTAAAG 60.500 44.000 0.00 0.00 0.00 1.85
891 4341 3.119424 TGCACTCGTGGTCATCGTATTTA 60.119 43.478 0.00 0.00 0.00 1.40
898 4348 4.122776 AGATAAATGCACTCGTGGTCATC 58.877 43.478 0.00 0.00 0.00 2.92
899 4349 4.122776 GAGATAAATGCACTCGTGGTCAT 58.877 43.478 0.00 0.00 0.00 3.06
906 4356 4.122046 TCACATGGAGATAAATGCACTCG 58.878 43.478 0.00 0.00 0.00 4.18
912 4362 5.763698 AGCTCACATCACATGGAGATAAATG 59.236 40.000 0.00 0.84 32.66 2.32
921 4371 8.060931 ACTATAGTATAGCTCACATCACATGG 57.939 38.462 15.80 0.00 33.60 3.66
923 4373 9.967451 ACTACTATAGTATAGCTCACATCACAT 57.033 33.333 15.80 0.00 37.23 3.21
924 4374 9.220767 CACTACTATAGTATAGCTCACATCACA 57.779 37.037 15.80 0.00 37.23 3.58
925 4375 8.178964 GCACTACTATAGTATAGCTCACATCAC 58.821 40.741 20.85 0.00 37.23 3.06
926 4376 8.103935 AGCACTACTATAGTATAGCTCACATCA 58.896 37.037 23.32 0.00 36.47 3.07
927 4377 8.500753 AGCACTACTATAGTATAGCTCACATC 57.499 38.462 23.32 2.00 36.47 3.06
928 4378 7.554835 GGAGCACTACTATAGTATAGCTCACAT 59.445 40.741 36.52 20.93 46.96 3.21
929 4379 6.879993 GGAGCACTACTATAGTATAGCTCACA 59.120 42.308 36.52 13.97 46.96 3.58
930 4380 6.879993 TGGAGCACTACTATAGTATAGCTCAC 59.120 42.308 36.52 30.58 46.96 3.51
931 4381 6.879993 GTGGAGCACTACTATAGTATAGCTCA 59.120 42.308 36.52 28.22 46.96 4.26
932 4382 7.107542 AGTGGAGCACTACTATAGTATAGCTC 58.892 42.308 33.08 33.08 43.46 4.09
933 4383 7.023171 AGTGGAGCACTACTATAGTATAGCT 57.977 40.000 26.60 26.60 43.46 3.32
949 4399 1.128200 ACACAAGTGGTAGTGGAGCA 58.872 50.000 5.08 0.00 39.99 4.26
950 4400 3.611766 ATACACAAGTGGTAGTGGAGC 57.388 47.619 5.08 0.00 39.99 4.70
951 4401 5.109903 GCTTATACACAAGTGGTAGTGGAG 58.890 45.833 5.08 0.00 39.99 3.86
952 4402 4.381185 CGCTTATACACAAGTGGTAGTGGA 60.381 45.833 5.08 0.00 39.99 4.02
953 4403 3.863424 CGCTTATACACAAGTGGTAGTGG 59.137 47.826 5.08 0.00 39.99 4.00
954 4404 3.306166 GCGCTTATACACAAGTGGTAGTG 59.694 47.826 0.00 0.00 41.40 2.74
955 4405 3.518590 GCGCTTATACACAAGTGGTAGT 58.481 45.455 0.00 0.00 36.69 2.73
956 4406 2.534349 CGCGCTTATACACAAGTGGTAG 59.466 50.000 5.56 0.00 36.69 3.18
957 4407 2.532235 CGCGCTTATACACAAGTGGTA 58.468 47.619 5.56 0.00 36.69 3.25
958 4408 1.355971 CGCGCTTATACACAAGTGGT 58.644 50.000 5.56 0.00 36.69 4.16
959 4409 0.026285 GCGCGCTTATACACAAGTGG 59.974 55.000 26.67 0.00 36.69 4.00
960 4410 0.999406 AGCGCGCTTATACACAAGTG 59.001 50.000 31.32 0.00 38.73 3.16
961 4411 1.278238 GAGCGCGCTTATACACAAGT 58.722 50.000 36.87 8.15 0.00 3.16
962 4412 0.227234 CGAGCGCGCTTATACACAAG 59.773 55.000 36.87 13.61 0.00 3.16
963 4413 1.143373 CCGAGCGCGCTTATACACAA 61.143 55.000 36.87 0.00 35.83 3.33
964 4414 1.587876 CCGAGCGCGCTTATACACA 60.588 57.895 36.87 0.00 35.83 3.72
965 4415 2.928732 GCCGAGCGCGCTTATACAC 61.929 63.158 36.87 20.11 35.83 2.90
966 4416 2.657296 GCCGAGCGCGCTTATACA 60.657 61.111 36.87 0.00 35.83 2.29
997 4447 0.324943 GGAAGGTTGCTGCTAGTGGA 59.675 55.000 0.00 0.00 0.00 4.02
1008 4458 2.815647 GCGCCTCGAGGAAGGTTG 60.816 66.667 35.69 16.29 38.79 3.77
1044 4494 7.281040 TGCTTTTGATTTTGATCACTTCTCT 57.719 32.000 0.00 0.00 0.00 3.10
1051 4501 7.306690 CGTCATGTTTGCTTTTGATTTTGATCA 60.307 33.333 0.00 0.00 0.00 2.92
1138 4588 2.202690 CGTCACCGCGCAGGATAA 60.203 61.111 22.10 6.60 45.00 1.75
1166 4616 1.911471 CTCCTGGCCCTCTTCTTCC 59.089 63.158 0.00 0.00 0.00 3.46
1215 4665 1.136984 CACGCCTCTGTAGACGGAC 59.863 63.158 0.00 0.00 0.00 4.79
1323 4773 4.202574 CCTGCACCACCACCACCA 62.203 66.667 0.00 0.00 0.00 4.17
1325 4775 4.892965 TGCCTGCACCACCACCAC 62.893 66.667 0.00 0.00 0.00 4.16
1476 4927 2.716217 ACAGAGCAAAATGAGGTAGCC 58.284 47.619 0.00 0.00 0.00 3.93
1527 4978 6.293135 GCTAGCACATAAAAGAACATCCTAGC 60.293 42.308 10.63 0.00 37.81 3.42
1530 4981 5.749462 AGCTAGCACATAAAAGAACATCCT 58.251 37.500 18.83 0.00 0.00 3.24
1531 4982 7.183580 CTAGCTAGCACATAAAAGAACATCC 57.816 40.000 18.83 0.00 0.00 3.51
1560 5012 7.918562 GCACAAATTAGTTAAAGACCAAGAACA 59.081 33.333 0.00 0.00 0.00 3.18
1596 5048 1.080025 CCCGAGGAAGACGAACACC 60.080 63.158 0.00 0.00 0.00 4.16
1694 5219 3.066481 GGAGTACTATCACGAGGGACAAC 59.934 52.174 0.00 0.00 0.00 3.32
1715 5267 7.319646 TGAGGGATTTTAAATTCGAAATGTGG 58.680 34.615 0.00 0.00 0.00 4.17
1757 5309 2.673326 GCGTAGTGTGGAGTACTTTCCC 60.673 54.545 0.00 0.00 36.35 3.97
1768 5320 1.573829 AAACCATGCGCGTAGTGTGG 61.574 55.000 12.92 12.92 41.96 4.17
1770 5322 1.337447 ACTAAACCATGCGCGTAGTGT 60.337 47.619 8.43 0.00 41.96 3.55
1773 5325 3.861113 TCTTAACTAAACCATGCGCGTAG 59.139 43.478 8.43 0.00 0.00 3.51
1988 5557 8.762645 TCCTCTCATGTTGAACAGAATTATACT 58.237 33.333 3.74 0.00 0.00 2.12
1989 5558 8.821894 GTCCTCTCATGTTGAACAGAATTATAC 58.178 37.037 3.74 0.00 0.00 1.47
1990 5559 8.762645 AGTCCTCTCATGTTGAACAGAATTATA 58.237 33.333 3.74 0.00 0.00 0.98
1991 5560 7.551974 CAGTCCTCTCATGTTGAACAGAATTAT 59.448 37.037 3.74 0.00 0.00 1.28
2022 5591 1.737735 CACCTGCAGCAACGATCGA 60.738 57.895 24.34 0.00 0.00 3.59
2199 5768 2.166459 TGTGGTTGATCTGATCGAGGAC 59.834 50.000 12.65 10.19 0.00 3.85
2218 5787 2.950975 TGCAGTGTCAATGTCACAATGT 59.049 40.909 12.61 0.00 40.99 2.71
2219 5788 3.629438 TGCAGTGTCAATGTCACAATG 57.371 42.857 12.61 5.88 41.66 2.82
2220 5789 4.552355 CATTGCAGTGTCAATGTCACAAT 58.448 39.130 21.98 1.06 44.94 2.71
2221 5790 3.967401 CATTGCAGTGTCAATGTCACAA 58.033 40.909 21.98 0.00 44.94 3.33
2222 5791 3.629438 CATTGCAGTGTCAATGTCACA 57.371 42.857 21.98 0.00 44.94 3.58
2288 5857 1.651240 CCCTTCTTGTGATGCCTGCG 61.651 60.000 0.00 0.00 0.00 5.18
2424 6002 1.069978 TGATGAGCCACAGAAACGTGA 59.930 47.619 0.00 0.00 39.34 4.35
2469 6057 1.561542 CCTCTTCCTGGGTAACTGCAT 59.438 52.381 0.00 0.00 0.00 3.96
2470 6058 0.984230 CCTCTTCCTGGGTAACTGCA 59.016 55.000 0.00 0.00 0.00 4.41
2471 6059 0.393132 GCCTCTTCCTGGGTAACTGC 60.393 60.000 0.00 0.00 0.00 4.40
2472 6060 0.108138 CGCCTCTTCCTGGGTAACTG 60.108 60.000 0.00 0.00 0.00 3.16
2636 6224 2.032528 CTCGACCTTGGGCAGCAA 59.967 61.111 0.00 0.00 0.00 3.91
2683 6271 3.628280 GACGTCGTCCTGGAGCACC 62.628 68.421 14.60 0.00 0.00 5.01
2691 6279 4.086178 CGCAGTCGACGTCGTCCT 62.086 66.667 34.40 27.16 40.80 3.85
2927 6525 4.479993 ACCATCCTGCGAGCTGGC 62.480 66.667 14.55 14.55 35.38 4.85
3037 6637 6.424509 CGTACTATCTTTGGTTTGGTTGTACA 59.575 38.462 0.00 0.00 0.00 2.90
3088 6688 3.644265 ACCCCAAAATTAACCACACTTCC 59.356 43.478 0.00 0.00 0.00 3.46
3265 6867 0.316841 TGCTTTTTCATCCAACGGCC 59.683 50.000 0.00 0.00 0.00 6.13
3384 6990 1.207329 GTTCATCGCCAGGGTTAGAGT 59.793 52.381 0.00 0.00 0.00 3.24
3412 7018 2.602878 GGTGATGCTAGTTCGTCGAAA 58.397 47.619 9.70 0.00 0.00 3.46
3415 7021 0.456221 AGGGTGATGCTAGTTCGTCG 59.544 55.000 0.00 0.00 0.00 5.12
3416 7022 1.476891 TGAGGGTGATGCTAGTTCGTC 59.523 52.381 0.00 0.00 0.00 4.20
3427 7033 0.537188 CTTAGCGGTGTGAGGGTGAT 59.463 55.000 0.00 0.00 0.00 3.06
3469 7075 1.040646 TCTATCTGGCAAGCTACCGG 58.959 55.000 0.00 0.00 34.63 5.28
3507 7113 8.354711 TGTAGTTTTATTATCCCATTGCAACA 57.645 30.769 0.00 0.00 0.00 3.33
3508 7114 9.248291 CATGTAGTTTTATTATCCCATTGCAAC 57.752 33.333 0.00 0.00 0.00 4.17
3512 7118 8.181904 AGGCATGTAGTTTTATTATCCCATTG 57.818 34.615 0.00 0.00 0.00 2.82
3528 7134 7.946207 TCTTCTATTGAGTTAGAGGCATGTAG 58.054 38.462 0.00 0.00 30.20 2.74
3541 7147 7.278875 GGTCTTCATCCATTCTTCTATTGAGT 58.721 38.462 0.00 0.00 0.00 3.41
3549 7155 2.242196 TGGGGGTCTTCATCCATTCTTC 59.758 50.000 0.00 0.00 0.00 2.87
3560 7166 1.078426 CGGACATGTGGGGGTCTTC 60.078 63.158 1.15 0.00 34.49 2.87
3563 7169 0.544697 AATACGGACATGTGGGGGTC 59.455 55.000 1.15 0.00 0.00 4.46
3567 7173 3.637229 ACTAGAGAATACGGACATGTGGG 59.363 47.826 1.15 0.00 0.00 4.61
3598 7204 6.036470 GCATTAAGAAACACATTAAGGGCTC 58.964 40.000 0.00 0.00 0.00 4.70
3599 7205 5.480073 TGCATTAAGAAACACATTAAGGGCT 59.520 36.000 0.00 0.00 31.57 5.19
3781 7989 5.580911 ATTTCGAAAATGCTTGCACTTTC 57.419 34.783 15.66 16.44 0.00 2.62
3838 8046 8.604640 TTGTTCACGTTACCAAGTATATTTGA 57.395 30.769 9.40 0.00 0.00 2.69
3852 8060 9.596677 CCGTAATTTAGAAATTTGTTCACGTTA 57.403 29.630 14.22 0.00 39.24 3.18
3893 8106 5.221884 TGGTTTTCTCCAAAAATGCATGGAT 60.222 36.000 7.21 0.00 44.41 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.