Multiple sequence alignment - TraesCS4D01G131100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G131100 chr4D 100.000 2459 0 0 1 2459 117707378 117704920 0.000000e+00 4542
1 TraesCS4D01G131100 chr4D 94.201 776 40 4 1687 2459 120882091 120881318 0.000000e+00 1179
2 TraesCS4D01G131100 chr4D 84.298 726 76 22 869 1575 117663184 117662478 0.000000e+00 675
3 TraesCS4D01G131100 chr4B 94.707 1247 47 5 453 1686 179843141 179841901 0.000000e+00 1919
4 TraesCS4D01G131100 chr4B 84.711 726 72 22 869 1575 179751011 179751716 0.000000e+00 689
5 TraesCS4D01G131100 chr4A 92.681 1052 50 16 643 1686 456293603 456294635 0.000000e+00 1491
6 TraesCS4D01G131100 chr4A 88.710 558 52 8 1018 1566 456336323 456336878 0.000000e+00 671
7 TraesCS4D01G131100 chr4A 88.978 499 49 4 1018 1510 457568311 457568809 1.620000e-171 612
8 TraesCS4D01G131100 chr7B 94.974 776 35 3 1687 2459 374311457 374312231 0.000000e+00 1214
9 TraesCS4D01G131100 chr7B 80.781 973 97 34 554 1476 700736651 700735719 0.000000e+00 678
10 TraesCS4D01G131100 chr7B 93.392 454 29 1 1 453 231723915 231724368 0.000000e+00 671
11 TraesCS4D01G131100 chr7B 92.998 457 31 1 1 456 517318671 517318215 0.000000e+00 665
12 TraesCS4D01G131100 chr7B 85.137 619 69 15 932 1529 700630462 700629846 1.620000e-171 612
13 TraesCS4D01G131100 chr7B 83.948 542 50 13 1065 1582 700685539 700685011 3.680000e-133 484
14 TraesCS4D01G131100 chr7B 82.812 320 24 10 466 772 700682707 700682406 8.720000e-65 257
15 TraesCS4D01G131100 chr5D 94.737 779 37 3 1684 2459 483565078 483565855 0.000000e+00 1208
16 TraesCS4D01G131100 chr2D 94.494 781 33 5 1687 2459 586288143 586287365 0.000000e+00 1195
17 TraesCS4D01G131100 chr2D 94.140 785 41 5 1676 2459 478050399 478051179 0.000000e+00 1190
18 TraesCS4D01G131100 chr3D 94.315 774 42 2 1687 2459 56302682 56303454 0.000000e+00 1184
19 TraesCS4D01G131100 chr3D 94.065 775 42 4 1687 2459 3157191 3156419 0.000000e+00 1173
20 TraesCS4D01G131100 chr3D 93.450 458 29 1 1 457 170543630 170543173 0.000000e+00 678
21 TraesCS4D01G131100 chr3B 94.118 782 41 5 1680 2459 770449823 770449045 0.000000e+00 1184
22 TraesCS4D01G131100 chr7D 94.080 777 40 5 1687 2459 76614661 76613887 0.000000e+00 1175
23 TraesCS4D01G131100 chr7D 81.729 914 100 29 640 1505 611445523 611444629 0.000000e+00 701
24 TraesCS4D01G131100 chr7D 87.586 145 10 2 466 602 611468615 611468471 7.040000e-36 161
25 TraesCS4D01G131100 chr6B 93.612 454 28 1 1 453 173799265 173799718 0.000000e+00 676
26 TraesCS4D01G131100 chr5B 93.363 452 29 1 1 451 358621111 358621562 0.000000e+00 667
27 TraesCS4D01G131100 chr5B 92.779 457 32 1 1 456 282083540 282083084 0.000000e+00 660
28 TraesCS4D01G131100 chr7A 81.140 912 96 41 662 1532 701428626 701427750 0.000000e+00 662
29 TraesCS4D01G131100 chr7A 88.542 96 3 2 515 602 701459738 701459643 2.590000e-20 110
30 TraesCS4D01G131100 chr6D 92.779 457 29 3 1 456 84236598 84236145 0.000000e+00 658
31 TraesCS4D01G131100 chr1B 92.560 457 33 1 1 456 502946390 502945934 0.000000e+00 654
32 TraesCS4D01G131100 chr1D 92.511 454 33 1 1 453 470828490 470828943 0.000000e+00 649


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G131100 chr4D 117704920 117707378 2458 True 4542.0 4542 100.000 1 2459 1 chr4D.!!$R2 2458
1 TraesCS4D01G131100 chr4D 120881318 120882091 773 True 1179.0 1179 94.201 1687 2459 1 chr4D.!!$R3 772
2 TraesCS4D01G131100 chr4D 117662478 117663184 706 True 675.0 675 84.298 869 1575 1 chr4D.!!$R1 706
3 TraesCS4D01G131100 chr4B 179841901 179843141 1240 True 1919.0 1919 94.707 453 1686 1 chr4B.!!$R1 1233
4 TraesCS4D01G131100 chr4B 179751011 179751716 705 False 689.0 689 84.711 869 1575 1 chr4B.!!$F1 706
5 TraesCS4D01G131100 chr4A 456293603 456294635 1032 False 1491.0 1491 92.681 643 1686 1 chr4A.!!$F1 1043
6 TraesCS4D01G131100 chr4A 456336323 456336878 555 False 671.0 671 88.710 1018 1566 1 chr4A.!!$F2 548
7 TraesCS4D01G131100 chr7B 374311457 374312231 774 False 1214.0 1214 94.974 1687 2459 1 chr7B.!!$F2 772
8 TraesCS4D01G131100 chr7B 700735719 700736651 932 True 678.0 678 80.781 554 1476 1 chr7B.!!$R3 922
9 TraesCS4D01G131100 chr7B 700629846 700630462 616 True 612.0 612 85.137 932 1529 1 chr7B.!!$R2 597
10 TraesCS4D01G131100 chr7B 700682406 700685539 3133 True 370.5 484 83.380 466 1582 2 chr7B.!!$R4 1116
11 TraesCS4D01G131100 chr5D 483565078 483565855 777 False 1208.0 1208 94.737 1684 2459 1 chr5D.!!$F1 775
12 TraesCS4D01G131100 chr2D 586287365 586288143 778 True 1195.0 1195 94.494 1687 2459 1 chr2D.!!$R1 772
13 TraesCS4D01G131100 chr2D 478050399 478051179 780 False 1190.0 1190 94.140 1676 2459 1 chr2D.!!$F1 783
14 TraesCS4D01G131100 chr3D 56302682 56303454 772 False 1184.0 1184 94.315 1687 2459 1 chr3D.!!$F1 772
15 TraesCS4D01G131100 chr3D 3156419 3157191 772 True 1173.0 1173 94.065 1687 2459 1 chr3D.!!$R1 772
16 TraesCS4D01G131100 chr3B 770449045 770449823 778 True 1184.0 1184 94.118 1680 2459 1 chr3B.!!$R1 779
17 TraesCS4D01G131100 chr7D 76613887 76614661 774 True 1175.0 1175 94.080 1687 2459 1 chr7D.!!$R1 772
18 TraesCS4D01G131100 chr7D 611444629 611445523 894 True 701.0 701 81.729 640 1505 1 chr7D.!!$R2 865
19 TraesCS4D01G131100 chr7A 701427750 701428626 876 True 662.0 662 81.140 662 1532 1 chr7A.!!$R1 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 325 0.036732 TGCTCTTGTAGTGCTTGGGG 59.963 55.0 0.0 0.0 35.86 4.96 F
325 326 0.036875 GCTCTTGTAGTGCTTGGGGT 59.963 55.0 0.0 0.0 32.42 4.95 F
419 420 0.039527 GGGTTGTTGTTGGTCGATGC 60.040 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1386 1499 1.335182 TCGAGATCGAACCTGCAGATC 59.665 52.381 17.39 12.21 46.30 2.75 R
1387 1500 1.393603 TCGAGATCGAACCTGCAGAT 58.606 50.000 17.39 2.96 46.30 2.90 R
2308 2701 1.993948 GCTACCTCCGGGGGAAACT 60.994 63.158 32.33 6.98 40.03 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.746277 GACCATGGTCGTGTGGGC 60.746 66.667 28.52 4.57 39.86 5.36
18 19 4.697756 ACCATGGTCGTGTGGGCG 62.698 66.667 13.00 0.00 39.86 6.13
56 57 4.657824 CGTTCGGTGGCGGTGAGT 62.658 66.667 0.00 0.00 0.00 3.41
57 58 2.652530 GTTCGGTGGCGGTGAGTA 59.347 61.111 0.00 0.00 0.00 2.59
58 59 1.217244 GTTCGGTGGCGGTGAGTAT 59.783 57.895 0.00 0.00 0.00 2.12
59 60 1.082117 GTTCGGTGGCGGTGAGTATG 61.082 60.000 0.00 0.00 0.00 2.39
60 61 2.202878 CGGTGGCGGTGAGTATGG 60.203 66.667 0.00 0.00 0.00 2.74
61 62 2.189521 GGTGGCGGTGAGTATGGG 59.810 66.667 0.00 0.00 0.00 4.00
62 63 2.513897 GTGGCGGTGAGTATGGGC 60.514 66.667 0.00 0.00 0.00 5.36
63 64 3.792736 TGGCGGTGAGTATGGGCC 61.793 66.667 0.00 0.00 44.00 5.80
64 65 4.910585 GGCGGTGAGTATGGGCCG 62.911 72.222 0.00 0.00 46.17 6.13
65 66 4.910585 GCGGTGAGTATGGGCCGG 62.911 72.222 0.00 0.00 43.90 6.13
66 67 4.235762 CGGTGAGTATGGGCCGGG 62.236 72.222 2.18 0.00 40.45 5.73
67 68 3.873812 GGTGAGTATGGGCCGGGG 61.874 72.222 2.18 0.00 0.00 5.73
68 69 3.087906 GTGAGTATGGGCCGGGGT 61.088 66.667 2.18 0.00 0.00 4.95
69 70 3.087253 TGAGTATGGGCCGGGGTG 61.087 66.667 2.18 0.00 0.00 4.61
70 71 2.766651 GAGTATGGGCCGGGGTGA 60.767 66.667 2.18 0.00 0.00 4.02
71 72 2.285818 AGTATGGGCCGGGGTGAA 60.286 61.111 2.18 0.00 0.00 3.18
72 73 1.917336 GAGTATGGGCCGGGGTGAAA 61.917 60.000 2.18 0.00 0.00 2.69
73 74 1.000646 GTATGGGCCGGGGTGAAAA 60.001 57.895 2.18 0.00 0.00 2.29
74 75 1.000646 TATGGGCCGGGGTGAAAAC 60.001 57.895 2.18 0.00 0.00 2.43
75 76 2.502329 TATGGGCCGGGGTGAAAACC 62.502 60.000 2.18 0.00 0.00 3.27
76 77 4.295199 GGGCCGGGGTGAAAACCT 62.295 66.667 2.18 0.00 0.00 3.50
77 78 2.989253 GGCCGGGGTGAAAACCTG 60.989 66.667 2.18 0.00 0.00 4.00
78 79 2.203437 GCCGGGGTGAAAACCTGT 60.203 61.111 2.18 0.00 32.26 4.00
79 80 1.830847 GCCGGGGTGAAAACCTGTT 60.831 57.895 2.18 0.00 32.26 3.16
80 81 1.802337 GCCGGGGTGAAAACCTGTTC 61.802 60.000 2.18 0.00 32.26 3.18
81 82 0.179001 CCGGGGTGAAAACCTGTTCT 60.179 55.000 0.00 0.00 32.26 3.01
82 83 1.072648 CCGGGGTGAAAACCTGTTCTA 59.927 52.381 0.00 0.00 32.26 2.10
83 84 2.290705 CCGGGGTGAAAACCTGTTCTAT 60.291 50.000 0.00 0.00 32.26 1.98
84 85 3.007635 CGGGGTGAAAACCTGTTCTATC 58.992 50.000 0.00 0.00 0.00 2.08
85 86 3.307480 CGGGGTGAAAACCTGTTCTATCT 60.307 47.826 0.00 0.00 0.00 1.98
86 87 4.663334 GGGGTGAAAACCTGTTCTATCTT 58.337 43.478 0.00 0.00 0.00 2.40
87 88 4.700692 GGGGTGAAAACCTGTTCTATCTTC 59.299 45.833 0.00 0.00 0.00 2.87
88 89 4.392138 GGGTGAAAACCTGTTCTATCTTCG 59.608 45.833 0.00 0.00 0.00 3.79
89 90 4.392138 GGTGAAAACCTGTTCTATCTTCGG 59.608 45.833 0.00 0.00 0.00 4.30
90 91 5.235516 GTGAAAACCTGTTCTATCTTCGGA 58.764 41.667 0.00 0.00 0.00 4.55
91 92 5.875359 GTGAAAACCTGTTCTATCTTCGGAT 59.125 40.000 0.00 0.00 38.39 4.18
92 93 5.874810 TGAAAACCTGTTCTATCTTCGGATG 59.125 40.000 0.00 0.00 36.01 3.51
93 94 4.408182 AACCTGTTCTATCTTCGGATGG 57.592 45.455 0.00 0.00 36.01 3.51
94 95 3.643237 ACCTGTTCTATCTTCGGATGGA 58.357 45.455 0.00 0.00 39.61 3.41
95 96 3.385111 ACCTGTTCTATCTTCGGATGGAC 59.615 47.826 0.00 0.00 40.75 4.02
96 97 3.243907 CCTGTTCTATCTTCGGATGGACC 60.244 52.174 0.00 0.00 40.75 4.46
116 117 3.793144 CGGCGGTGAAGCTTGCTC 61.793 66.667 2.10 0.00 37.29 4.26
117 118 3.435186 GGCGGTGAAGCTTGCTCC 61.435 66.667 2.10 5.37 37.29 4.70
118 119 3.435186 GCGGTGAAGCTTGCTCCC 61.435 66.667 2.10 0.00 0.00 4.30
119 120 2.348998 CGGTGAAGCTTGCTCCCT 59.651 61.111 2.10 0.00 0.00 4.20
120 121 1.302832 CGGTGAAGCTTGCTCCCTT 60.303 57.895 2.10 0.00 0.00 3.95
121 122 1.301677 CGGTGAAGCTTGCTCCCTTC 61.302 60.000 2.10 0.00 38.30 3.46
122 123 0.962855 GGTGAAGCTTGCTCCCTTCC 60.963 60.000 2.10 0.00 37.29 3.46
123 124 0.037447 GTGAAGCTTGCTCCCTTCCT 59.963 55.000 2.10 0.00 37.29 3.36
124 125 0.037303 TGAAGCTTGCTCCCTTCCTG 59.963 55.000 2.10 0.00 37.29 3.86
125 126 0.326264 GAAGCTTGCTCCCTTCCTGA 59.674 55.000 2.10 0.00 33.13 3.86
126 127 0.773644 AAGCTTGCTCCCTTCCTGAA 59.226 50.000 0.00 0.00 0.00 3.02
127 128 0.327591 AGCTTGCTCCCTTCCTGAAG 59.672 55.000 0.00 0.00 38.14 3.02
135 136 4.170723 CTTCCTGAAGGCGTCGTC 57.829 61.111 0.00 0.00 34.87 4.20
136 137 1.801913 CTTCCTGAAGGCGTCGTCG 60.802 63.158 0.00 0.00 40.37 5.12
147 148 2.890474 GTCGTCGCGGCCATCATT 60.890 61.111 4.51 0.00 0.00 2.57
148 149 2.889988 TCGTCGCGGCCATCATTG 60.890 61.111 4.51 0.00 0.00 2.82
149 150 4.596180 CGTCGCGGCCATCATTGC 62.596 66.667 4.51 0.00 0.00 3.56
150 151 3.204827 GTCGCGGCCATCATTGCT 61.205 61.111 6.13 0.00 0.00 3.91
151 152 2.896854 TCGCGGCCATCATTGCTC 60.897 61.111 6.13 0.00 0.00 4.26
152 153 4.303603 CGCGGCCATCATTGCTCG 62.304 66.667 2.24 0.00 0.00 5.03
153 154 3.204827 GCGGCCATCATTGCTCGT 61.205 61.111 2.24 0.00 0.00 4.18
154 155 3.017323 CGGCCATCATTGCTCGTC 58.983 61.111 2.24 0.00 0.00 4.20
155 156 2.874694 CGGCCATCATTGCTCGTCG 61.875 63.158 2.24 0.00 0.00 5.12
156 157 1.815421 GGCCATCATTGCTCGTCGT 60.815 57.895 0.00 0.00 0.00 4.34
157 158 1.349627 GCCATCATTGCTCGTCGTG 59.650 57.895 0.00 0.00 0.00 4.35
158 159 1.361668 GCCATCATTGCTCGTCGTGT 61.362 55.000 0.00 0.00 0.00 4.49
159 160 1.078709 CCATCATTGCTCGTCGTGTT 58.921 50.000 0.00 0.00 0.00 3.32
160 161 1.201954 CCATCATTGCTCGTCGTGTTG 60.202 52.381 0.00 0.00 0.00 3.33
161 162 0.443869 ATCATTGCTCGTCGTGTTGC 59.556 50.000 0.00 0.00 0.00 4.17
162 163 0.599991 TCATTGCTCGTCGTGTTGCT 60.600 50.000 0.00 0.00 0.00 3.91
163 164 0.179240 CATTGCTCGTCGTGTTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
164 165 0.319900 ATTGCTCGTCGTGTTGCTCT 60.320 50.000 0.00 0.00 0.00 4.09
165 166 0.312729 TTGCTCGTCGTGTTGCTCTA 59.687 50.000 0.00 0.00 0.00 2.43
166 167 0.109735 TGCTCGTCGTGTTGCTCTAG 60.110 55.000 0.00 0.00 0.00 2.43
167 168 0.798771 GCTCGTCGTGTTGCTCTAGG 60.799 60.000 0.00 0.00 0.00 3.02
168 169 0.179161 CTCGTCGTGTTGCTCTAGGG 60.179 60.000 0.00 0.00 0.00 3.53
169 170 1.153823 CGTCGTGTTGCTCTAGGGG 60.154 63.158 0.00 0.00 0.00 4.79
170 171 1.592400 CGTCGTGTTGCTCTAGGGGA 61.592 60.000 0.00 0.00 0.00 4.81
171 172 0.606604 GTCGTGTTGCTCTAGGGGAA 59.393 55.000 0.00 0.00 0.00 3.97
172 173 1.001633 GTCGTGTTGCTCTAGGGGAAA 59.998 52.381 0.00 0.00 0.00 3.13
173 174 1.001633 TCGTGTTGCTCTAGGGGAAAC 59.998 52.381 0.00 0.00 0.00 2.78
174 175 1.002087 CGTGTTGCTCTAGGGGAAACT 59.998 52.381 0.00 0.00 0.00 2.66
175 176 2.701107 GTGTTGCTCTAGGGGAAACTC 58.299 52.381 0.00 0.00 0.00 3.01
177 178 2.303022 TGTTGCTCTAGGGGAAACTCTG 59.697 50.000 0.00 0.00 44.95 3.35
178 179 2.567615 GTTGCTCTAGGGGAAACTCTGA 59.432 50.000 0.00 0.00 44.95 3.27
179 180 2.180276 TGCTCTAGGGGAAACTCTGAC 58.820 52.381 0.00 0.00 44.95 3.51
180 181 2.225394 TGCTCTAGGGGAAACTCTGACT 60.225 50.000 0.00 0.00 44.95 3.41
181 182 2.429250 GCTCTAGGGGAAACTCTGACTC 59.571 54.545 0.00 0.00 44.95 3.36
182 183 3.880117 GCTCTAGGGGAAACTCTGACTCT 60.880 52.174 0.00 0.00 44.95 3.24
183 184 3.951680 CTCTAGGGGAAACTCTGACTCTC 59.048 52.174 0.00 0.00 44.95 3.20
184 185 1.551452 AGGGGAAACTCTGACTCTCG 58.449 55.000 0.00 0.00 42.28 4.04
185 186 0.533032 GGGGAAACTCTGACTCTCGG 59.467 60.000 0.00 0.00 0.00 4.63
186 187 0.533032 GGGAAACTCTGACTCTCGGG 59.467 60.000 0.00 0.00 0.00 5.14
187 188 1.258676 GGAAACTCTGACTCTCGGGT 58.741 55.000 0.00 0.00 0.00 5.28
188 189 1.202817 GGAAACTCTGACTCTCGGGTC 59.797 57.143 0.00 0.00 36.81 4.46
189 190 0.882474 AAACTCTGACTCTCGGGTCG 59.118 55.000 0.00 0.00 38.91 4.79
190 191 0.961358 AACTCTGACTCTCGGGTCGG 60.961 60.000 0.00 0.00 42.24 4.79
191 192 1.078356 CTCTGACTCTCGGGTCGGA 60.078 63.158 8.12 8.12 45.79 4.55
192 193 1.370587 CTCTGACTCTCGGGTCGGAC 61.371 65.000 4.36 0.00 43.93 4.79
193 194 2.745100 TGACTCTCGGGTCGGACG 60.745 66.667 1.43 0.00 38.91 4.79
194 195 3.507009 GACTCTCGGGTCGGACGG 61.507 72.222 1.43 0.00 0.00 4.79
195 196 4.341783 ACTCTCGGGTCGGACGGT 62.342 66.667 1.43 0.00 0.00 4.83
196 197 3.812019 CTCTCGGGTCGGACGGTG 61.812 72.222 1.43 0.00 0.00 4.94
219 220 2.499685 GCTCCGGTGCGTATCCTT 59.500 61.111 13.48 0.00 0.00 3.36
220 221 1.591863 GCTCCGGTGCGTATCCTTC 60.592 63.158 13.48 0.00 0.00 3.46
221 222 1.067582 CTCCGGTGCGTATCCTTCC 59.932 63.158 0.00 0.00 0.00 3.46
222 223 1.380785 TCCGGTGCGTATCCTTCCT 60.381 57.895 0.00 0.00 0.00 3.36
223 224 0.106569 TCCGGTGCGTATCCTTCCTA 60.107 55.000 0.00 0.00 0.00 2.94
224 225 0.748450 CCGGTGCGTATCCTTCCTAA 59.252 55.000 0.00 0.00 0.00 2.69
225 226 1.137479 CCGGTGCGTATCCTTCCTAAA 59.863 52.381 0.00 0.00 0.00 1.85
226 227 2.470821 CGGTGCGTATCCTTCCTAAAG 58.529 52.381 0.00 0.00 0.00 1.85
235 236 1.463674 CCTTCCTAAAGGCATTGCGT 58.536 50.000 1.91 0.00 45.50 5.24
236 237 1.818674 CCTTCCTAAAGGCATTGCGTT 59.181 47.619 10.63 10.63 45.50 4.84
237 238 2.415893 CCTTCCTAAAGGCATTGCGTTG 60.416 50.000 16.53 5.99 45.50 4.10
238 239 1.173043 TCCTAAAGGCATTGCGTTGG 58.827 50.000 16.53 14.00 36.74 3.77
239 240 1.173043 CCTAAAGGCATTGCGTTGGA 58.827 50.000 16.53 7.81 36.74 3.53
240 241 1.133025 CCTAAAGGCATTGCGTTGGAG 59.867 52.381 16.53 15.43 36.74 3.86
241 242 1.812571 CTAAAGGCATTGCGTTGGAGT 59.187 47.619 16.53 4.56 36.74 3.85
242 243 0.598065 AAAGGCATTGCGTTGGAGTC 59.402 50.000 16.53 0.00 36.74 3.36
243 244 1.244019 AAGGCATTGCGTTGGAGTCC 61.244 55.000 15.24 0.73 35.29 3.85
244 245 1.971167 GGCATTGCGTTGGAGTCCA 60.971 57.895 8.12 8.12 0.00 4.02
245 246 1.210155 GCATTGCGTTGGAGTCCAC 59.790 57.895 12.69 6.52 30.78 4.02
246 247 1.497278 CATTGCGTTGGAGTCCACG 59.503 57.895 22.20 22.20 30.78 4.94
247 248 1.671054 ATTGCGTTGGAGTCCACGG 60.671 57.895 25.38 16.64 30.78 4.94
248 249 2.391724 ATTGCGTTGGAGTCCACGGT 62.392 55.000 25.38 5.04 30.78 4.83
249 250 2.280592 GCGTTGGAGTCCACGGTT 60.281 61.111 25.38 0.00 30.78 4.44
250 251 2.315386 GCGTTGGAGTCCACGGTTC 61.315 63.158 25.38 12.39 30.78 3.62
251 252 2.019951 CGTTGGAGTCCACGGTTCG 61.020 63.158 12.69 8.27 30.78 3.95
252 253 1.068585 GTTGGAGTCCACGGTTCGT 59.931 57.895 12.69 0.00 42.36 3.85
253 254 0.942884 GTTGGAGTCCACGGTTCGTC 60.943 60.000 12.69 0.00 38.32 4.20
254 255 1.393487 TTGGAGTCCACGGTTCGTCA 61.393 55.000 12.69 0.00 38.32 4.35
255 256 1.183030 TGGAGTCCACGGTTCGTCAT 61.183 55.000 8.12 0.00 38.32 3.06
256 257 0.813184 GGAGTCCACGGTTCGTCATA 59.187 55.000 3.60 0.00 38.32 2.15
257 258 1.407979 GGAGTCCACGGTTCGTCATAT 59.592 52.381 3.60 0.00 38.32 1.78
258 259 2.460918 GAGTCCACGGTTCGTCATATG 58.539 52.381 0.00 0.00 38.32 1.78
259 260 0.928229 GTCCACGGTTCGTCATATGC 59.072 55.000 0.00 0.00 38.32 3.14
260 261 0.526739 TCCACGGTTCGTCATATGCG 60.527 55.000 11.69 11.69 38.32 4.73
261 262 1.487452 CCACGGTTCGTCATATGCGG 61.487 60.000 16.01 3.72 38.32 5.69
262 263 1.881252 ACGGTTCGTCATATGCGGC 60.881 57.895 16.01 0.00 33.69 6.53
263 264 1.591594 CGGTTCGTCATATGCGGCT 60.592 57.895 16.01 0.00 0.00 5.52
264 265 1.151777 CGGTTCGTCATATGCGGCTT 61.152 55.000 16.01 0.00 0.00 4.35
265 266 0.582005 GGTTCGTCATATGCGGCTTC 59.418 55.000 16.01 7.28 0.00 3.86
266 267 1.286501 GTTCGTCATATGCGGCTTCA 58.713 50.000 16.01 0.00 0.00 3.02
267 268 1.867233 GTTCGTCATATGCGGCTTCAT 59.133 47.619 16.01 0.00 0.00 2.57
268 269 1.783284 TCGTCATATGCGGCTTCATC 58.217 50.000 16.01 0.00 0.00 2.92
269 270 1.341209 TCGTCATATGCGGCTTCATCT 59.659 47.619 16.01 0.00 0.00 2.90
270 271 1.723542 CGTCATATGCGGCTTCATCTC 59.276 52.381 0.00 0.00 0.00 2.75
271 272 2.608998 CGTCATATGCGGCTTCATCTCT 60.609 50.000 0.00 0.00 0.00 3.10
272 273 3.397482 GTCATATGCGGCTTCATCTCTT 58.603 45.455 0.00 0.00 0.00 2.85
273 274 3.431572 GTCATATGCGGCTTCATCTCTTC 59.568 47.826 0.00 0.00 0.00 2.87
274 275 2.140065 TATGCGGCTTCATCTCTTCG 57.860 50.000 0.00 0.00 0.00 3.79
275 276 1.156645 ATGCGGCTTCATCTCTTCGC 61.157 55.000 0.00 0.00 42.90 4.70
276 277 2.864931 GCGGCTTCATCTCTTCGCG 61.865 63.158 0.00 0.00 34.08 5.87
277 278 2.233654 CGGCTTCATCTCTTCGCGG 61.234 63.158 6.13 0.00 0.00 6.46
278 279 1.153549 GGCTTCATCTCTTCGCGGT 60.154 57.895 6.13 0.00 0.00 5.68
279 280 1.424493 GGCTTCATCTCTTCGCGGTG 61.424 60.000 6.13 0.00 0.00 4.94
280 281 1.424493 GCTTCATCTCTTCGCGGTGG 61.424 60.000 6.13 0.00 0.00 4.61
281 282 1.424493 CTTCATCTCTTCGCGGTGGC 61.424 60.000 6.13 0.00 0.00 5.01
293 294 3.343421 GGTGGCGTGTTCACGGTC 61.343 66.667 23.27 10.12 36.09 4.79
294 295 3.698463 GTGGCGTGTTCACGGTCG 61.698 66.667 23.27 2.35 0.00 4.79
295 296 3.902086 TGGCGTGTTCACGGTCGA 61.902 61.111 23.27 5.71 0.00 4.20
296 297 3.103911 GGCGTGTTCACGGTCGAG 61.104 66.667 23.27 0.00 0.00 4.04
297 298 3.103911 GCGTGTTCACGGTCGAGG 61.104 66.667 23.27 0.00 0.00 4.63
298 299 2.640989 CGTGTTCACGGTCGAGGA 59.359 61.111 16.17 0.00 0.00 3.71
299 300 1.728426 CGTGTTCACGGTCGAGGAC 60.728 63.158 16.17 0.00 0.00 3.85
311 312 3.394836 GAGGACCCGGCTGCTCTT 61.395 66.667 10.82 0.00 0.00 2.85
312 313 3.672295 GAGGACCCGGCTGCTCTTG 62.672 68.421 10.82 0.00 0.00 3.02
313 314 4.021925 GGACCCGGCTGCTCTTGT 62.022 66.667 0.00 0.00 0.00 3.16
314 315 2.656069 GGACCCGGCTGCTCTTGTA 61.656 63.158 0.00 0.00 0.00 2.41
315 316 1.153549 GACCCGGCTGCTCTTGTAG 60.154 63.158 0.00 0.00 0.00 2.74
316 317 1.889530 GACCCGGCTGCTCTTGTAGT 61.890 60.000 0.00 0.00 0.00 2.73
317 318 1.448540 CCCGGCTGCTCTTGTAGTG 60.449 63.158 0.00 0.00 0.00 2.74
318 319 2.103042 CCGGCTGCTCTTGTAGTGC 61.103 63.158 0.00 0.00 35.45 4.40
319 320 1.079543 CGGCTGCTCTTGTAGTGCT 60.080 57.895 0.00 0.00 35.86 4.40
320 321 0.671781 CGGCTGCTCTTGTAGTGCTT 60.672 55.000 0.00 0.00 35.86 3.91
321 322 0.801251 GGCTGCTCTTGTAGTGCTTG 59.199 55.000 0.00 0.00 35.86 4.01
322 323 0.801251 GCTGCTCTTGTAGTGCTTGG 59.199 55.000 0.00 0.00 35.86 3.61
323 324 1.446907 CTGCTCTTGTAGTGCTTGGG 58.553 55.000 0.00 0.00 35.86 4.12
324 325 0.036732 TGCTCTTGTAGTGCTTGGGG 59.963 55.000 0.00 0.00 35.86 4.96
325 326 0.036875 GCTCTTGTAGTGCTTGGGGT 59.963 55.000 0.00 0.00 32.42 4.95
326 327 1.813513 CTCTTGTAGTGCTTGGGGTG 58.186 55.000 0.00 0.00 0.00 4.61
327 328 0.400213 TCTTGTAGTGCTTGGGGTGG 59.600 55.000 0.00 0.00 0.00 4.61
328 329 0.110486 CTTGTAGTGCTTGGGGTGGT 59.890 55.000 0.00 0.00 0.00 4.16
329 330 0.179004 TTGTAGTGCTTGGGGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
330 331 1.349542 TGTAGTGCTTGGGGTGGTGT 61.350 55.000 0.00 0.00 0.00 4.16
331 332 0.179001 GTAGTGCTTGGGGTGGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
332 333 0.179004 TAGTGCTTGGGGTGGTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
333 334 2.837291 TGCTTGGGGTGGTGTTGC 60.837 61.111 0.00 0.00 0.00 4.17
334 335 2.521708 GCTTGGGGTGGTGTTGCT 60.522 61.111 0.00 0.00 0.00 3.91
335 336 2.859981 GCTTGGGGTGGTGTTGCTG 61.860 63.158 0.00 0.00 0.00 4.41
336 337 2.837291 TTGGGGTGGTGTTGCTGC 60.837 61.111 0.00 0.00 0.00 5.25
340 341 4.030452 GGTGGTGTTGCTGCGCTC 62.030 66.667 9.73 0.28 0.00 5.03
341 342 3.279116 GTGGTGTTGCTGCGCTCA 61.279 61.111 9.73 3.52 0.00 4.26
342 343 2.974148 TGGTGTTGCTGCGCTCAG 60.974 61.111 9.73 0.00 43.16 3.35
357 358 3.784883 GCTCAGCGCTTATGTATCTTG 57.215 47.619 7.50 0.00 35.14 3.02
358 359 2.096516 GCTCAGCGCTTATGTATCTTGC 60.097 50.000 7.50 0.00 35.14 4.01
359 360 3.388308 CTCAGCGCTTATGTATCTTGCT 58.612 45.455 7.50 0.00 0.00 3.91
360 361 3.797039 TCAGCGCTTATGTATCTTGCTT 58.203 40.909 7.50 0.00 0.00 3.91
361 362 4.191544 TCAGCGCTTATGTATCTTGCTTT 58.808 39.130 7.50 0.00 0.00 3.51
362 363 4.034394 TCAGCGCTTATGTATCTTGCTTTG 59.966 41.667 7.50 0.00 0.00 2.77
363 364 3.313526 AGCGCTTATGTATCTTGCTTTGG 59.686 43.478 2.64 0.00 0.00 3.28
364 365 3.548818 GCGCTTATGTATCTTGCTTTGGG 60.549 47.826 0.00 0.00 0.00 4.12
365 366 3.627577 CGCTTATGTATCTTGCTTTGGGT 59.372 43.478 0.00 0.00 0.00 4.51
366 367 4.496341 CGCTTATGTATCTTGCTTTGGGTG 60.496 45.833 0.00 0.00 0.00 4.61
367 368 4.399303 GCTTATGTATCTTGCTTTGGGTGT 59.601 41.667 0.00 0.00 0.00 4.16
368 369 5.677091 GCTTATGTATCTTGCTTTGGGTGTG 60.677 44.000 0.00 0.00 0.00 3.82
369 370 3.222173 TGTATCTTGCTTTGGGTGTGT 57.778 42.857 0.00 0.00 0.00 3.72
370 371 2.884012 TGTATCTTGCTTTGGGTGTGTG 59.116 45.455 0.00 0.00 0.00 3.82
371 372 0.675633 ATCTTGCTTTGGGTGTGTGC 59.324 50.000 0.00 0.00 0.00 4.57
372 373 1.299316 CTTGCTTTGGGTGTGTGCG 60.299 57.895 0.00 0.00 0.00 5.34
373 374 2.003658 CTTGCTTTGGGTGTGTGCGT 62.004 55.000 0.00 0.00 0.00 5.24
374 375 2.026014 GCTTTGGGTGTGTGCGTG 59.974 61.111 0.00 0.00 0.00 5.34
375 376 2.770589 GCTTTGGGTGTGTGCGTGT 61.771 57.895 0.00 0.00 0.00 4.49
376 377 1.063972 CTTTGGGTGTGTGCGTGTG 59.936 57.895 0.00 0.00 0.00 3.82
377 378 1.653094 CTTTGGGTGTGTGCGTGTGT 61.653 55.000 0.00 0.00 0.00 3.72
378 379 1.244697 TTTGGGTGTGTGCGTGTGTT 61.245 50.000 0.00 0.00 0.00 3.32
379 380 1.927608 TTGGGTGTGTGCGTGTGTTG 61.928 55.000 0.00 0.00 0.00 3.33
380 381 2.403378 GGGTGTGTGCGTGTGTTGT 61.403 57.895 0.00 0.00 0.00 3.32
381 382 1.226267 GGTGTGTGCGTGTGTTGTG 60.226 57.895 0.00 0.00 0.00 3.33
382 383 1.640210 GGTGTGTGCGTGTGTTGTGA 61.640 55.000 0.00 0.00 0.00 3.58
383 384 0.376852 GTGTGTGCGTGTGTTGTGAT 59.623 50.000 0.00 0.00 0.00 3.06
384 385 0.376502 TGTGTGCGTGTGTTGTGATG 59.623 50.000 0.00 0.00 0.00 3.07
385 386 0.316937 GTGTGCGTGTGTTGTGATGG 60.317 55.000 0.00 0.00 0.00 3.51
386 387 1.370414 GTGCGTGTGTTGTGATGGC 60.370 57.895 0.00 0.00 0.00 4.40
387 388 2.127270 GCGTGTGTTGTGATGGCG 60.127 61.111 0.00 0.00 0.00 5.69
388 389 2.892334 GCGTGTGTTGTGATGGCGT 61.892 57.895 0.00 0.00 0.00 5.68
389 390 1.082821 CGTGTGTTGTGATGGCGTG 60.083 57.895 0.00 0.00 0.00 5.34
390 391 1.494766 CGTGTGTTGTGATGGCGTGA 61.495 55.000 0.00 0.00 0.00 4.35
391 392 0.235665 GTGTGTTGTGATGGCGTGAG 59.764 55.000 0.00 0.00 0.00 3.51
392 393 0.179059 TGTGTTGTGATGGCGTGAGT 60.179 50.000 0.00 0.00 0.00 3.41
393 394 0.944386 GTGTTGTGATGGCGTGAGTT 59.056 50.000 0.00 0.00 0.00 3.01
394 395 1.333619 GTGTTGTGATGGCGTGAGTTT 59.666 47.619 0.00 0.00 0.00 2.66
395 396 1.333308 TGTTGTGATGGCGTGAGTTTG 59.667 47.619 0.00 0.00 0.00 2.93
396 397 1.333619 GTTGTGATGGCGTGAGTTTGT 59.666 47.619 0.00 0.00 0.00 2.83
397 398 2.535012 TGTGATGGCGTGAGTTTGTA 57.465 45.000 0.00 0.00 0.00 2.41
398 399 3.052455 TGTGATGGCGTGAGTTTGTAT 57.948 42.857 0.00 0.00 0.00 2.29
399 400 3.407698 TGTGATGGCGTGAGTTTGTATT 58.592 40.909 0.00 0.00 0.00 1.89
400 401 3.188254 TGTGATGGCGTGAGTTTGTATTG 59.812 43.478 0.00 0.00 0.00 1.90
401 402 2.746904 TGATGGCGTGAGTTTGTATTGG 59.253 45.455 0.00 0.00 0.00 3.16
402 403 1.529226 TGGCGTGAGTTTGTATTGGG 58.471 50.000 0.00 0.00 0.00 4.12
403 404 1.202830 TGGCGTGAGTTTGTATTGGGT 60.203 47.619 0.00 0.00 0.00 4.51
404 405 1.883926 GGCGTGAGTTTGTATTGGGTT 59.116 47.619 0.00 0.00 0.00 4.11
405 406 2.351350 GGCGTGAGTTTGTATTGGGTTG 60.351 50.000 0.00 0.00 0.00 3.77
406 407 2.292292 GCGTGAGTTTGTATTGGGTTGT 59.708 45.455 0.00 0.00 0.00 3.32
407 408 3.243267 GCGTGAGTTTGTATTGGGTTGTT 60.243 43.478 0.00 0.00 0.00 2.83
408 409 4.286910 CGTGAGTTTGTATTGGGTTGTTG 58.713 43.478 0.00 0.00 0.00 3.33
409 410 4.201970 CGTGAGTTTGTATTGGGTTGTTGT 60.202 41.667 0.00 0.00 0.00 3.32
410 411 5.656480 GTGAGTTTGTATTGGGTTGTTGTT 58.344 37.500 0.00 0.00 0.00 2.83
411 412 5.518487 GTGAGTTTGTATTGGGTTGTTGTTG 59.482 40.000 0.00 0.00 0.00 3.33
412 413 5.017294 AGTTTGTATTGGGTTGTTGTTGG 57.983 39.130 0.00 0.00 0.00 3.77
413 414 4.468153 AGTTTGTATTGGGTTGTTGTTGGT 59.532 37.500 0.00 0.00 0.00 3.67
414 415 4.657436 TTGTATTGGGTTGTTGTTGGTC 57.343 40.909 0.00 0.00 0.00 4.02
415 416 2.619177 TGTATTGGGTTGTTGTTGGTCG 59.381 45.455 0.00 0.00 0.00 4.79
416 417 2.060050 ATTGGGTTGTTGTTGGTCGA 57.940 45.000 0.00 0.00 0.00 4.20
417 418 2.060050 TTGGGTTGTTGTTGGTCGAT 57.940 45.000 0.00 0.00 0.00 3.59
418 419 1.313772 TGGGTTGTTGTTGGTCGATG 58.686 50.000 0.00 0.00 0.00 3.84
419 420 0.039527 GGGTTGTTGTTGGTCGATGC 60.040 55.000 0.00 0.00 0.00 3.91
420 421 0.951558 GGTTGTTGTTGGTCGATGCT 59.048 50.000 0.00 0.00 0.00 3.79
421 422 1.336755 GGTTGTTGTTGGTCGATGCTT 59.663 47.619 0.00 0.00 0.00 3.91
422 423 2.223711 GGTTGTTGTTGGTCGATGCTTT 60.224 45.455 0.00 0.00 0.00 3.51
423 424 3.003897 GGTTGTTGTTGGTCGATGCTTTA 59.996 43.478 0.00 0.00 0.00 1.85
424 425 4.320935 GGTTGTTGTTGGTCGATGCTTTAT 60.321 41.667 0.00 0.00 0.00 1.40
425 426 5.106475 GGTTGTTGTTGGTCGATGCTTTATA 60.106 40.000 0.00 0.00 0.00 0.98
426 427 6.404293 GGTTGTTGTTGGTCGATGCTTTATAT 60.404 38.462 0.00 0.00 0.00 0.86
427 428 7.201661 GGTTGTTGTTGGTCGATGCTTTATATA 60.202 37.037 0.00 0.00 0.00 0.86
428 429 8.342634 GTTGTTGTTGGTCGATGCTTTATATAT 58.657 33.333 0.00 0.00 0.00 0.86
429 430 9.549078 TTGTTGTTGGTCGATGCTTTATATATA 57.451 29.630 0.00 0.00 0.00 0.86
430 431 9.549078 TGTTGTTGGTCGATGCTTTATATATAA 57.451 29.630 0.81 0.81 0.00 0.98
436 437 9.173021 TGGTCGATGCTTTATATATAAAATGGG 57.827 33.333 16.69 8.13 32.39 4.00
437 438 9.391006 GGTCGATGCTTTATATATAAAATGGGA 57.609 33.333 16.69 8.81 32.39 4.37
439 440 9.093970 TCGATGCTTTATATATAAAATGGGACG 57.906 33.333 16.69 15.73 32.39 4.79
440 441 9.093970 CGATGCTTTATATATAAAATGGGACGA 57.906 33.333 16.69 0.00 32.39 4.20
446 447 9.802039 TTTATATATAAAATGGGACGAAAGGCT 57.198 29.630 14.26 0.00 32.05 4.58
447 448 9.802039 TTATATATAAAATGGGACGAAAGGCTT 57.198 29.630 2.56 0.00 40.87 4.35
448 449 8.706322 ATATATAAAATGGGACGAAAGGCTTT 57.294 30.769 13.25 13.25 40.87 3.51
449 450 5.738619 ATAAAATGGGACGAAAGGCTTTT 57.261 34.783 14.66 0.00 40.87 2.27
450 451 4.415881 AAAATGGGACGAAAGGCTTTTT 57.584 36.364 14.66 4.28 40.87 1.94
451 452 3.660501 AATGGGACGAAAGGCTTTTTC 57.339 42.857 14.66 13.06 40.87 2.29
460 461 1.544724 AAGGCTTTTTCGCTATGCCA 58.455 45.000 0.00 0.00 45.42 4.92
461 462 1.767759 AGGCTTTTTCGCTATGCCAT 58.232 45.000 0.00 0.00 45.42 4.40
464 465 3.891366 AGGCTTTTTCGCTATGCCATATT 59.109 39.130 0.00 0.00 45.42 1.28
474 475 1.985473 ATGCCATATTCCGTGCACAT 58.015 45.000 18.64 5.47 36.41 3.21
476 477 1.134128 TGCCATATTCCGTGCACATCT 60.134 47.619 18.64 0.38 0.00 2.90
484 485 2.393768 CGTGCACATCTCACCCAGC 61.394 63.158 18.64 0.00 0.00 4.85
607 621 1.333308 CCACGTGCTGTCATTGTTTCA 59.667 47.619 10.91 0.00 0.00 2.69
608 622 2.375110 CACGTGCTGTCATTGTTTCAC 58.625 47.619 0.82 0.00 0.00 3.18
634 648 0.251742 TGGGAGCATTTGACCCTTGG 60.252 55.000 0.00 0.00 43.59 3.61
722 744 5.393569 CCATACTACCTCCATGATCGATGAC 60.394 48.000 0.54 0.00 33.31 3.06
965 1024 0.323178 AGCTCCCATTTCAGCTGGTG 60.323 55.000 15.13 10.48 44.58 4.17
1302 1409 1.009335 CACGGAAGACACGACGACA 60.009 57.895 0.00 0.00 34.93 4.35
1362 1469 4.803426 CTGGGGTCGCACGAGCTC 62.803 72.222 20.06 17.58 42.89 4.09
1386 1499 1.751927 GGAGGAGTGCAGGGCAATG 60.752 63.158 0.00 0.00 41.47 2.82
1387 1500 1.300963 GAGGAGTGCAGGGCAATGA 59.699 57.895 0.00 0.00 41.47 2.57
1388 1501 0.106819 GAGGAGTGCAGGGCAATGAT 60.107 55.000 0.00 0.00 41.47 2.45
1639 1867 8.789825 AAAGATGATATATGTGCAATCTCCTC 57.210 34.615 0.00 0.00 0.00 3.71
1646 1874 9.371136 GATATATGTGCAATCTCCTCGAAATAA 57.629 33.333 0.00 0.00 0.00 1.40
1652 1880 6.743172 GTGCAATCTCCTCGAAATAAGTTTTC 59.257 38.462 0.00 0.00 0.00 2.29
1724 1955 3.473647 CCCCGCCTCTGCATCTGA 61.474 66.667 0.00 0.00 37.32 3.27
1748 1979 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
1838 2070 4.202121 TGTCGCTACTCCTATCCAATTGAC 60.202 45.833 7.12 0.00 0.00 3.18
1841 2073 4.551388 GCTACTCCTATCCAATTGACGAG 58.449 47.826 7.12 6.37 0.00 4.18
1855 2087 4.671569 CGAGGGGGCGCTGATAGC 62.672 72.222 7.64 0.00 38.02 2.97
1903 2135 4.083003 CGCAGCCAAACCTAAACATCTAAA 60.083 41.667 0.00 0.00 0.00 1.85
2308 2701 5.172205 CGTCATCCGATCTACTGATCTAGA 58.828 45.833 0.00 0.00 45.10 2.43
2455 4169 0.548682 ATCTGTTCCAGTGGCCTCCT 60.549 55.000 3.51 0.00 32.61 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.697756 CGCCCACACGACCATGGT 62.698 66.667 19.89 19.89 33.80 3.55
39 40 2.552585 ATACTCACCGCCACCGAACG 62.553 60.000 0.00 0.00 36.29 3.95
40 41 1.082117 CATACTCACCGCCACCGAAC 61.082 60.000 0.00 0.00 36.29 3.95
41 42 1.216977 CATACTCACCGCCACCGAA 59.783 57.895 0.00 0.00 36.29 4.30
42 43 2.717044 CCATACTCACCGCCACCGA 61.717 63.158 0.00 0.00 36.29 4.69
43 44 2.202878 CCATACTCACCGCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
44 45 2.189521 CCCATACTCACCGCCACC 59.810 66.667 0.00 0.00 0.00 4.61
45 46 2.513897 GCCCATACTCACCGCCAC 60.514 66.667 0.00 0.00 0.00 5.01
46 47 3.792736 GGCCCATACTCACCGCCA 61.793 66.667 0.00 0.00 39.50 5.69
47 48 4.910585 CGGCCCATACTCACCGCC 62.911 72.222 0.00 0.00 39.08 6.13
48 49 4.910585 CCGGCCCATACTCACCGC 62.911 72.222 0.00 0.00 44.29 5.68
49 50 4.235762 CCCGGCCCATACTCACCG 62.236 72.222 0.00 0.00 45.21 4.94
50 51 3.873812 CCCCGGCCCATACTCACC 61.874 72.222 0.00 0.00 0.00 4.02
51 52 3.087906 ACCCCGGCCCATACTCAC 61.088 66.667 0.00 0.00 0.00 3.51
52 53 3.087253 CACCCCGGCCCATACTCA 61.087 66.667 0.00 0.00 0.00 3.41
53 54 1.917336 TTTCACCCCGGCCCATACTC 61.917 60.000 0.00 0.00 0.00 2.59
54 55 1.502527 TTTTCACCCCGGCCCATACT 61.503 55.000 0.00 0.00 0.00 2.12
55 56 1.000646 TTTTCACCCCGGCCCATAC 60.001 57.895 0.00 0.00 0.00 2.39
56 57 1.000646 GTTTTCACCCCGGCCCATA 60.001 57.895 0.00 0.00 0.00 2.74
57 58 2.283604 GTTTTCACCCCGGCCCAT 60.284 61.111 0.00 0.00 0.00 4.00
58 59 4.607025 GGTTTTCACCCCGGCCCA 62.607 66.667 0.00 0.00 37.03 5.36
59 60 4.295199 AGGTTTTCACCCCGGCCC 62.295 66.667 0.00 0.00 45.63 5.80
60 61 2.989253 CAGGTTTTCACCCCGGCC 60.989 66.667 0.00 0.00 45.63 6.13
61 62 1.802337 GAACAGGTTTTCACCCCGGC 61.802 60.000 0.00 0.00 45.63 6.13
62 63 0.179001 AGAACAGGTTTTCACCCCGG 60.179 55.000 0.00 0.00 45.63 5.73
63 64 2.554370 TAGAACAGGTTTTCACCCCG 57.446 50.000 0.00 0.00 45.63 5.73
64 65 4.302559 AGATAGAACAGGTTTTCACCCC 57.697 45.455 0.00 0.00 45.63 4.95
65 66 4.392138 CGAAGATAGAACAGGTTTTCACCC 59.608 45.833 0.00 0.00 45.63 4.61
66 67 4.392138 CCGAAGATAGAACAGGTTTTCACC 59.608 45.833 0.00 0.00 44.67 4.02
67 68 5.235516 TCCGAAGATAGAACAGGTTTTCAC 58.764 41.667 0.00 0.00 0.00 3.18
68 69 5.477607 TCCGAAGATAGAACAGGTTTTCA 57.522 39.130 0.00 0.00 0.00 2.69
69 70 5.294552 CCATCCGAAGATAGAACAGGTTTTC 59.705 44.000 0.00 0.00 0.00 2.29
70 71 5.045869 TCCATCCGAAGATAGAACAGGTTTT 60.046 40.000 0.00 0.00 0.00 2.43
71 72 4.469945 TCCATCCGAAGATAGAACAGGTTT 59.530 41.667 0.00 0.00 0.00 3.27
72 73 4.030913 TCCATCCGAAGATAGAACAGGTT 58.969 43.478 0.00 0.00 0.00 3.50
73 74 3.385111 GTCCATCCGAAGATAGAACAGGT 59.615 47.826 0.00 0.00 0.00 4.00
74 75 3.243907 GGTCCATCCGAAGATAGAACAGG 60.244 52.174 0.00 0.00 29.17 4.00
75 76 3.983741 GGTCCATCCGAAGATAGAACAG 58.016 50.000 0.00 0.00 29.17 3.16
99 100 3.793144 GAGCAAGCTTCACCGCCG 61.793 66.667 0.00 0.00 0.00 6.46
100 101 3.435186 GGAGCAAGCTTCACCGCC 61.435 66.667 0.00 0.00 0.00 6.13
101 102 3.435186 GGGAGCAAGCTTCACCGC 61.435 66.667 0.00 0.00 0.00 5.68
102 103 1.301677 GAAGGGAGCAAGCTTCACCG 61.302 60.000 0.00 0.00 0.00 4.94
103 104 0.962855 GGAAGGGAGCAAGCTTCACC 60.963 60.000 0.00 0.00 0.00 4.02
104 105 0.037447 AGGAAGGGAGCAAGCTTCAC 59.963 55.000 0.00 0.00 0.00 3.18
105 106 0.037303 CAGGAAGGGAGCAAGCTTCA 59.963 55.000 0.00 0.00 0.00 3.02
106 107 0.326264 TCAGGAAGGGAGCAAGCTTC 59.674 55.000 0.00 0.00 0.00 3.86
107 108 0.773644 TTCAGGAAGGGAGCAAGCTT 59.226 50.000 0.00 0.00 0.00 3.74
108 109 0.327591 CTTCAGGAAGGGAGCAAGCT 59.672 55.000 0.00 0.00 34.87 3.74
109 110 2.865492 CTTCAGGAAGGGAGCAAGC 58.135 57.895 1.01 0.00 34.87 4.01
118 119 1.801913 CGACGACGCCTTCAGGAAG 60.802 63.158 0.00 2.01 37.39 3.46
119 120 2.257371 CGACGACGCCTTCAGGAA 59.743 61.111 0.00 0.00 37.39 3.36
130 131 2.890474 AATGATGGCCGCGACGAC 60.890 61.111 8.23 0.00 0.00 4.34
131 132 2.889988 CAATGATGGCCGCGACGA 60.890 61.111 8.23 0.00 0.00 4.20
132 133 4.596180 GCAATGATGGCCGCGACG 62.596 66.667 8.23 0.00 0.00 5.12
133 134 3.173390 GAGCAATGATGGCCGCGAC 62.173 63.158 8.23 0.00 0.00 5.19
134 135 2.896854 GAGCAATGATGGCCGCGA 60.897 61.111 8.23 0.00 0.00 5.87
135 136 4.303603 CGAGCAATGATGGCCGCG 62.304 66.667 0.00 0.00 0.00 6.46
136 137 3.173390 GACGAGCAATGATGGCCGC 62.173 63.158 0.00 0.00 0.00 6.53
137 138 2.874694 CGACGAGCAATGATGGCCG 61.875 63.158 0.00 1.92 0.00 6.13
138 139 1.815421 ACGACGAGCAATGATGGCC 60.815 57.895 0.00 0.00 0.00 5.36
139 140 1.349627 CACGACGAGCAATGATGGC 59.650 57.895 0.00 0.00 0.00 4.40
140 141 1.078709 AACACGACGAGCAATGATGG 58.921 50.000 0.00 0.00 0.00 3.51
141 142 1.787989 GCAACACGACGAGCAATGATG 60.788 52.381 0.00 0.00 0.00 3.07
142 143 0.443869 GCAACACGACGAGCAATGAT 59.556 50.000 0.00 0.00 0.00 2.45
143 144 0.599991 AGCAACACGACGAGCAATGA 60.600 50.000 0.00 0.00 0.00 2.57
144 145 0.179240 GAGCAACACGACGAGCAATG 60.179 55.000 0.00 0.00 0.00 2.82
145 146 0.319900 AGAGCAACACGACGAGCAAT 60.320 50.000 0.00 0.00 0.00 3.56
146 147 0.312729 TAGAGCAACACGACGAGCAA 59.687 50.000 0.00 0.00 0.00 3.91
147 148 0.109735 CTAGAGCAACACGACGAGCA 60.110 55.000 0.00 0.00 0.00 4.26
148 149 0.798771 CCTAGAGCAACACGACGAGC 60.799 60.000 0.00 0.00 0.00 5.03
149 150 0.179161 CCCTAGAGCAACACGACGAG 60.179 60.000 0.00 0.00 0.00 4.18
150 151 1.592400 CCCCTAGAGCAACACGACGA 61.592 60.000 0.00 0.00 0.00 4.20
151 152 1.153823 CCCCTAGAGCAACACGACG 60.154 63.158 0.00 0.00 0.00 5.12
152 153 0.606604 TTCCCCTAGAGCAACACGAC 59.393 55.000 0.00 0.00 0.00 4.34
153 154 1.001633 GTTTCCCCTAGAGCAACACGA 59.998 52.381 0.00 0.00 0.00 4.35
154 155 1.002087 AGTTTCCCCTAGAGCAACACG 59.998 52.381 0.00 0.00 0.00 4.49
155 156 2.303311 AGAGTTTCCCCTAGAGCAACAC 59.697 50.000 0.00 0.00 0.00 3.32
156 157 2.303022 CAGAGTTTCCCCTAGAGCAACA 59.697 50.000 0.00 0.00 0.00 3.33
157 158 2.567615 TCAGAGTTTCCCCTAGAGCAAC 59.432 50.000 0.00 0.00 0.00 4.17
158 159 2.567615 GTCAGAGTTTCCCCTAGAGCAA 59.432 50.000 0.00 0.00 0.00 3.91
159 160 2.180276 GTCAGAGTTTCCCCTAGAGCA 58.820 52.381 0.00 0.00 0.00 4.26
160 161 2.429250 GAGTCAGAGTTTCCCCTAGAGC 59.571 54.545 0.00 0.00 0.00 4.09
161 162 3.951680 GAGAGTCAGAGTTTCCCCTAGAG 59.048 52.174 0.00 0.00 0.00 2.43
162 163 3.622704 CGAGAGTCAGAGTTTCCCCTAGA 60.623 52.174 0.00 0.00 0.00 2.43
163 164 2.685897 CGAGAGTCAGAGTTTCCCCTAG 59.314 54.545 0.00 0.00 0.00 3.02
164 165 2.620886 CCGAGAGTCAGAGTTTCCCCTA 60.621 54.545 0.00 0.00 0.00 3.53
165 166 1.551452 CGAGAGTCAGAGTTTCCCCT 58.449 55.000 0.00 0.00 0.00 4.79
166 167 0.533032 CCGAGAGTCAGAGTTTCCCC 59.467 60.000 0.00 0.00 0.00 4.81
167 168 0.533032 CCCGAGAGTCAGAGTTTCCC 59.467 60.000 0.00 0.00 0.00 3.97
168 169 1.202817 GACCCGAGAGTCAGAGTTTCC 59.797 57.143 0.00 0.00 36.73 3.13
169 170 1.135632 CGACCCGAGAGTCAGAGTTTC 60.136 57.143 0.00 0.00 36.52 2.78
170 171 0.882474 CGACCCGAGAGTCAGAGTTT 59.118 55.000 0.00 0.00 36.52 2.66
171 172 0.961358 CCGACCCGAGAGTCAGAGTT 60.961 60.000 0.00 0.00 36.52 3.01
172 173 1.377463 CCGACCCGAGAGTCAGAGT 60.377 63.158 0.00 0.00 36.52 3.24
173 174 1.078356 TCCGACCCGAGAGTCAGAG 60.078 63.158 0.00 0.00 36.52 3.35
174 175 1.376942 GTCCGACCCGAGAGTCAGA 60.377 63.158 0.00 0.00 36.52 3.27
175 176 2.751913 CGTCCGACCCGAGAGTCAG 61.752 68.421 0.00 0.00 36.52 3.51
176 177 2.745100 CGTCCGACCCGAGAGTCA 60.745 66.667 0.00 0.00 36.52 3.41
177 178 3.507009 CCGTCCGACCCGAGAGTC 61.507 72.222 0.00 0.00 0.00 3.36
178 179 4.341783 ACCGTCCGACCCGAGAGT 62.342 66.667 0.00 0.00 0.00 3.24
179 180 3.812019 CACCGTCCGACCCGAGAG 61.812 72.222 0.00 0.00 0.00 3.20
202 203 1.591863 GAAGGATACGCACCGGAGC 60.592 63.158 14.54 14.54 46.39 4.70
203 204 1.067582 GGAAGGATACGCACCGGAG 59.932 63.158 9.46 0.00 46.39 4.63
204 205 0.106569 TAGGAAGGATACGCACCGGA 60.107 55.000 9.46 0.00 46.39 5.14
205 206 0.748450 TTAGGAAGGATACGCACCGG 59.252 55.000 0.00 0.00 46.39 5.28
206 207 2.470821 CTTTAGGAAGGATACGCACCG 58.529 52.381 0.00 0.00 46.39 4.94
217 218 2.415893 CCAACGCAATGCCTTTAGGAAG 60.416 50.000 0.00 0.00 37.39 3.46
218 219 1.543802 CCAACGCAATGCCTTTAGGAA 59.456 47.619 0.00 0.00 37.39 3.36
219 220 1.173043 CCAACGCAATGCCTTTAGGA 58.827 50.000 0.00 0.00 37.39 2.94
220 221 1.133025 CTCCAACGCAATGCCTTTAGG 59.867 52.381 0.00 0.00 38.53 2.69
221 222 1.812571 ACTCCAACGCAATGCCTTTAG 59.187 47.619 0.00 0.00 0.00 1.85
222 223 1.810151 GACTCCAACGCAATGCCTTTA 59.190 47.619 0.00 0.00 0.00 1.85
223 224 0.598065 GACTCCAACGCAATGCCTTT 59.402 50.000 0.00 0.00 0.00 3.11
224 225 1.244019 GGACTCCAACGCAATGCCTT 61.244 55.000 0.00 0.00 0.00 4.35
225 226 1.675641 GGACTCCAACGCAATGCCT 60.676 57.895 0.00 0.00 0.00 4.75
226 227 1.971167 TGGACTCCAACGCAATGCC 60.971 57.895 0.00 0.00 0.00 4.40
227 228 1.210155 GTGGACTCCAACGCAATGC 59.790 57.895 0.00 0.00 34.18 3.56
228 229 1.497278 CGTGGACTCCAACGCAATG 59.503 57.895 0.00 0.00 34.18 2.82
229 230 1.671054 CCGTGGACTCCAACGCAAT 60.671 57.895 0.00 0.00 34.18 3.56
230 231 2.280524 CCGTGGACTCCAACGCAA 60.281 61.111 0.00 0.00 34.18 4.85
231 232 2.981977 GAACCGTGGACTCCAACGCA 62.982 60.000 0.00 0.00 34.18 5.24
232 233 2.280592 AACCGTGGACTCCAACGC 60.281 61.111 0.00 0.00 34.18 4.84
233 234 2.019951 CGAACCGTGGACTCCAACG 61.020 63.158 0.00 6.25 34.18 4.10
234 235 0.942884 GACGAACCGTGGACTCCAAC 60.943 60.000 0.00 0.00 41.37 3.77
235 236 1.364901 GACGAACCGTGGACTCCAA 59.635 57.895 0.00 0.00 41.37 3.53
236 237 1.183030 ATGACGAACCGTGGACTCCA 61.183 55.000 0.00 0.00 41.37 3.86
237 238 0.813184 TATGACGAACCGTGGACTCC 59.187 55.000 0.00 0.00 41.37 3.85
238 239 2.460918 CATATGACGAACCGTGGACTC 58.539 52.381 0.00 0.00 41.37 3.36
239 240 1.470979 GCATATGACGAACCGTGGACT 60.471 52.381 6.97 0.00 41.37 3.85
240 241 0.928229 GCATATGACGAACCGTGGAC 59.072 55.000 6.97 0.00 41.37 4.02
241 242 0.526739 CGCATATGACGAACCGTGGA 60.527 55.000 6.97 0.00 41.37 4.02
242 243 1.487452 CCGCATATGACGAACCGTGG 61.487 60.000 17.40 0.00 41.37 4.94
243 244 1.924335 CCGCATATGACGAACCGTG 59.076 57.895 17.40 0.85 41.37 4.94
244 245 1.881252 GCCGCATATGACGAACCGT 60.881 57.895 17.40 0.00 45.10 4.83
245 246 1.151777 AAGCCGCATATGACGAACCG 61.152 55.000 17.40 6.23 0.00 4.44
246 247 0.582005 GAAGCCGCATATGACGAACC 59.418 55.000 17.40 8.16 0.00 3.62
247 248 1.286501 TGAAGCCGCATATGACGAAC 58.713 50.000 17.40 10.84 0.00 3.95
248 249 2.135139 GATGAAGCCGCATATGACGAA 58.865 47.619 17.40 2.86 0.00 3.85
249 250 1.341209 AGATGAAGCCGCATATGACGA 59.659 47.619 17.40 2.07 0.00 4.20
250 251 1.723542 GAGATGAAGCCGCATATGACG 59.276 52.381 6.97 9.57 0.00 4.35
251 252 3.037431 AGAGATGAAGCCGCATATGAC 57.963 47.619 6.97 0.00 0.00 3.06
252 253 3.657634 GAAGAGATGAAGCCGCATATGA 58.342 45.455 6.97 0.00 0.00 2.15
253 254 2.411069 CGAAGAGATGAAGCCGCATATG 59.589 50.000 0.00 0.00 0.00 1.78
254 255 2.681706 CGAAGAGATGAAGCCGCATAT 58.318 47.619 0.00 0.00 0.00 1.78
255 256 1.869754 GCGAAGAGATGAAGCCGCATA 60.870 52.381 0.00 0.00 41.89 3.14
256 257 1.156645 GCGAAGAGATGAAGCCGCAT 61.157 55.000 0.00 0.00 41.89 4.73
257 258 1.811266 GCGAAGAGATGAAGCCGCA 60.811 57.895 0.00 0.00 41.89 5.69
258 259 2.864931 CGCGAAGAGATGAAGCCGC 61.865 63.158 0.00 0.00 39.33 6.53
259 260 2.233654 CCGCGAAGAGATGAAGCCG 61.234 63.158 8.23 0.00 0.00 5.52
260 261 1.153549 ACCGCGAAGAGATGAAGCC 60.154 57.895 8.23 0.00 0.00 4.35
261 262 1.424493 CCACCGCGAAGAGATGAAGC 61.424 60.000 8.23 0.00 0.00 3.86
262 263 1.424493 GCCACCGCGAAGAGATGAAG 61.424 60.000 8.23 0.00 0.00 3.02
263 264 1.447838 GCCACCGCGAAGAGATGAA 60.448 57.895 8.23 0.00 0.00 2.57
264 265 2.184322 GCCACCGCGAAGAGATGA 59.816 61.111 8.23 0.00 0.00 2.92
282 283 1.372623 GGTCCTCGACCGTGAACAC 60.373 63.158 0.00 0.00 43.14 3.32
283 284 3.045142 GGTCCTCGACCGTGAACA 58.955 61.111 0.00 0.00 43.14 3.18
294 295 3.394836 AAGAGCAGCCGGGTCCTC 61.395 66.667 17.08 17.08 45.21 3.71
295 296 3.710722 CAAGAGCAGCCGGGTCCT 61.711 66.667 1.27 0.00 45.21 3.85
296 297 2.579684 CTACAAGAGCAGCCGGGTCC 62.580 65.000 1.27 0.00 45.21 4.46
297 298 1.153549 CTACAAGAGCAGCCGGGTC 60.154 63.158 1.27 0.00 44.43 4.46
298 299 1.913762 ACTACAAGAGCAGCCGGGT 60.914 57.895 0.00 0.00 0.00 5.28
299 300 1.448540 CACTACAAGAGCAGCCGGG 60.449 63.158 2.18 0.00 0.00 5.73
300 301 2.103042 GCACTACAAGAGCAGCCGG 61.103 63.158 0.00 0.00 31.92 6.13
301 302 0.671781 AAGCACTACAAGAGCAGCCG 60.672 55.000 0.00 0.00 34.13 5.52
302 303 0.801251 CAAGCACTACAAGAGCAGCC 59.199 55.000 0.00 0.00 34.13 4.85
303 304 0.801251 CCAAGCACTACAAGAGCAGC 59.199 55.000 0.00 0.00 34.13 5.25
304 305 1.446907 CCCAAGCACTACAAGAGCAG 58.553 55.000 0.00 0.00 34.13 4.24
305 306 0.036732 CCCCAAGCACTACAAGAGCA 59.963 55.000 0.00 0.00 34.13 4.26
306 307 0.036875 ACCCCAAGCACTACAAGAGC 59.963 55.000 0.00 0.00 31.73 4.09
307 308 1.611673 CCACCCCAAGCACTACAAGAG 60.612 57.143 0.00 0.00 0.00 2.85
308 309 0.400213 CCACCCCAAGCACTACAAGA 59.600 55.000 0.00 0.00 0.00 3.02
309 310 0.110486 ACCACCCCAAGCACTACAAG 59.890 55.000 0.00 0.00 0.00 3.16
310 311 0.179004 CACCACCCCAAGCACTACAA 60.179 55.000 0.00 0.00 0.00 2.41
311 312 1.349542 ACACCACCCCAAGCACTACA 61.350 55.000 0.00 0.00 0.00 2.74
312 313 0.179001 AACACCACCCCAAGCACTAC 60.179 55.000 0.00 0.00 0.00 2.73
313 314 0.179004 CAACACCACCCCAAGCACTA 60.179 55.000 0.00 0.00 0.00 2.74
314 315 1.455587 CAACACCACCCCAAGCACT 60.456 57.895 0.00 0.00 0.00 4.40
315 316 3.128375 CAACACCACCCCAAGCAC 58.872 61.111 0.00 0.00 0.00 4.40
316 317 2.837291 GCAACACCACCCCAAGCA 60.837 61.111 0.00 0.00 0.00 3.91
317 318 2.521708 AGCAACACCACCCCAAGC 60.522 61.111 0.00 0.00 0.00 4.01
318 319 2.859981 GCAGCAACACCACCCCAAG 61.860 63.158 0.00 0.00 0.00 3.61
319 320 2.837291 GCAGCAACACCACCCCAA 60.837 61.111 0.00 0.00 0.00 4.12
338 339 3.388308 AGCAAGATACATAAGCGCTGAG 58.612 45.455 12.58 6.57 0.00 3.35
339 340 3.459232 AGCAAGATACATAAGCGCTGA 57.541 42.857 12.58 2.35 0.00 4.26
340 341 4.277258 CAAAGCAAGATACATAAGCGCTG 58.723 43.478 12.58 0.89 0.00 5.18
341 342 3.313526 CCAAAGCAAGATACATAAGCGCT 59.686 43.478 2.64 2.64 0.00 5.92
342 343 3.548818 CCCAAAGCAAGATACATAAGCGC 60.549 47.826 0.00 0.00 0.00 5.92
343 344 3.627577 ACCCAAAGCAAGATACATAAGCG 59.372 43.478 0.00 0.00 0.00 4.68
344 345 4.399303 ACACCCAAAGCAAGATACATAAGC 59.601 41.667 0.00 0.00 0.00 3.09
345 346 5.415701 ACACACCCAAAGCAAGATACATAAG 59.584 40.000 0.00 0.00 0.00 1.73
346 347 5.182950 CACACACCCAAAGCAAGATACATAA 59.817 40.000 0.00 0.00 0.00 1.90
347 348 4.699735 CACACACCCAAAGCAAGATACATA 59.300 41.667 0.00 0.00 0.00 2.29
348 349 3.507233 CACACACCCAAAGCAAGATACAT 59.493 43.478 0.00 0.00 0.00 2.29
349 350 2.884012 CACACACCCAAAGCAAGATACA 59.116 45.455 0.00 0.00 0.00 2.29
350 351 2.351738 GCACACACCCAAAGCAAGATAC 60.352 50.000 0.00 0.00 0.00 2.24
351 352 1.885887 GCACACACCCAAAGCAAGATA 59.114 47.619 0.00 0.00 0.00 1.98
352 353 0.675633 GCACACACCCAAAGCAAGAT 59.324 50.000 0.00 0.00 0.00 2.40
353 354 1.723608 CGCACACACCCAAAGCAAGA 61.724 55.000 0.00 0.00 0.00 3.02
354 355 1.299316 CGCACACACCCAAAGCAAG 60.299 57.895 0.00 0.00 0.00 4.01
355 356 2.049185 ACGCACACACCCAAAGCAA 61.049 52.632 0.00 0.00 0.00 3.91
356 357 2.439338 ACGCACACACCCAAAGCA 60.439 55.556 0.00 0.00 0.00 3.91
357 358 2.026014 CACGCACACACCCAAAGC 59.974 61.111 0.00 0.00 0.00 3.51
358 359 1.063972 CACACGCACACACCCAAAG 59.936 57.895 0.00 0.00 0.00 2.77
359 360 1.244697 AACACACGCACACACCCAAA 61.245 50.000 0.00 0.00 0.00 3.28
360 361 1.675972 AACACACGCACACACCCAA 60.676 52.632 0.00 0.00 0.00 4.12
361 362 2.045829 AACACACGCACACACCCA 60.046 55.556 0.00 0.00 0.00 4.51
362 363 2.403378 ACAACACACGCACACACCC 61.403 57.895 0.00 0.00 0.00 4.61
363 364 1.226267 CACAACACACGCACACACC 60.226 57.895 0.00 0.00 0.00 4.16
364 365 0.376852 ATCACAACACACGCACACAC 59.623 50.000 0.00 0.00 0.00 3.82
365 366 0.376502 CATCACAACACACGCACACA 59.623 50.000 0.00 0.00 0.00 3.72
366 367 0.316937 CCATCACAACACACGCACAC 60.317 55.000 0.00 0.00 0.00 3.82
367 368 2.020926 CCATCACAACACACGCACA 58.979 52.632 0.00 0.00 0.00 4.57
368 369 1.370414 GCCATCACAACACACGCAC 60.370 57.895 0.00 0.00 0.00 5.34
369 370 2.891221 CGCCATCACAACACACGCA 61.891 57.895 0.00 0.00 0.00 5.24
370 371 2.127270 CGCCATCACAACACACGC 60.127 61.111 0.00 0.00 0.00 5.34
371 372 1.082821 CACGCCATCACAACACACG 60.083 57.895 0.00 0.00 0.00 4.49
372 373 0.235665 CTCACGCCATCACAACACAC 59.764 55.000 0.00 0.00 0.00 3.82
373 374 0.179059 ACTCACGCCATCACAACACA 60.179 50.000 0.00 0.00 0.00 3.72
374 375 0.944386 AACTCACGCCATCACAACAC 59.056 50.000 0.00 0.00 0.00 3.32
375 376 1.333308 CAAACTCACGCCATCACAACA 59.667 47.619 0.00 0.00 0.00 3.33
376 377 1.333619 ACAAACTCACGCCATCACAAC 59.666 47.619 0.00 0.00 0.00 3.32
377 378 1.674359 ACAAACTCACGCCATCACAA 58.326 45.000 0.00 0.00 0.00 3.33
378 379 2.535012 TACAAACTCACGCCATCACA 57.465 45.000 0.00 0.00 0.00 3.58
379 380 3.426159 CCAATACAAACTCACGCCATCAC 60.426 47.826 0.00 0.00 0.00 3.06
380 381 2.746904 CCAATACAAACTCACGCCATCA 59.253 45.455 0.00 0.00 0.00 3.07
381 382 2.097466 CCCAATACAAACTCACGCCATC 59.903 50.000 0.00 0.00 0.00 3.51
382 383 2.091541 CCCAATACAAACTCACGCCAT 58.908 47.619 0.00 0.00 0.00 4.40
383 384 1.202830 ACCCAATACAAACTCACGCCA 60.203 47.619 0.00 0.00 0.00 5.69
384 385 1.530323 ACCCAATACAAACTCACGCC 58.470 50.000 0.00 0.00 0.00 5.68
385 386 2.292292 ACAACCCAATACAAACTCACGC 59.708 45.455 0.00 0.00 0.00 5.34
386 387 4.201970 ACAACAACCCAATACAAACTCACG 60.202 41.667 0.00 0.00 0.00 4.35
387 388 5.257082 ACAACAACCCAATACAAACTCAC 57.743 39.130 0.00 0.00 0.00 3.51
388 389 5.394663 CCAACAACAACCCAATACAAACTCA 60.395 40.000 0.00 0.00 0.00 3.41
389 390 5.047188 CCAACAACAACCCAATACAAACTC 58.953 41.667 0.00 0.00 0.00 3.01
390 391 4.468153 ACCAACAACAACCCAATACAAACT 59.532 37.500 0.00 0.00 0.00 2.66
391 392 4.760878 ACCAACAACAACCCAATACAAAC 58.239 39.130 0.00 0.00 0.00 2.93
392 393 4.440250 CGACCAACAACAACCCAATACAAA 60.440 41.667 0.00 0.00 0.00 2.83
393 394 3.066900 CGACCAACAACAACCCAATACAA 59.933 43.478 0.00 0.00 0.00 2.41
394 395 2.619177 CGACCAACAACAACCCAATACA 59.381 45.455 0.00 0.00 0.00 2.29
395 396 2.879646 TCGACCAACAACAACCCAATAC 59.120 45.455 0.00 0.00 0.00 1.89
396 397 3.210232 TCGACCAACAACAACCCAATA 57.790 42.857 0.00 0.00 0.00 1.90
397 398 2.060050 TCGACCAACAACAACCCAAT 57.940 45.000 0.00 0.00 0.00 3.16
398 399 1.678627 CATCGACCAACAACAACCCAA 59.321 47.619 0.00 0.00 0.00 4.12
399 400 1.313772 CATCGACCAACAACAACCCA 58.686 50.000 0.00 0.00 0.00 4.51
400 401 0.039527 GCATCGACCAACAACAACCC 60.040 55.000 0.00 0.00 0.00 4.11
401 402 0.951558 AGCATCGACCAACAACAACC 59.048 50.000 0.00 0.00 0.00 3.77
402 403 2.774439 AAGCATCGACCAACAACAAC 57.226 45.000 0.00 0.00 0.00 3.32
403 404 6.751514 ATATAAAGCATCGACCAACAACAA 57.248 33.333 0.00 0.00 0.00 2.83
404 405 9.549078 TTATATATAAAGCATCGACCAACAACA 57.451 29.630 2.56 0.00 0.00 3.33
410 411 9.173021 CCCATTTTATATATAAAGCATCGACCA 57.827 33.333 15.65 1.64 34.13 4.02
411 412 9.391006 TCCCATTTTATATATAAAGCATCGACC 57.609 33.333 15.65 0.00 34.13 4.79
413 414 9.093970 CGTCCCATTTTATATATAAAGCATCGA 57.906 33.333 15.65 8.28 34.13 3.59
414 415 9.093970 TCGTCCCATTTTATATATAAAGCATCG 57.906 33.333 15.65 15.37 34.13 3.84
420 421 9.802039 AGCCTTTCGTCCCATTTTATATATAAA 57.198 29.630 12.90 12.90 0.00 1.40
421 422 9.802039 AAGCCTTTCGTCCCATTTTATATATAA 57.198 29.630 0.81 0.81 0.00 0.98
422 423 9.802039 AAAGCCTTTCGTCCCATTTTATATATA 57.198 29.630 0.00 0.00 0.00 0.86
423 424 8.706322 AAAGCCTTTCGTCCCATTTTATATAT 57.294 30.769 0.00 0.00 0.00 0.86
424 425 8.528044 AAAAGCCTTTCGTCCCATTTTATATA 57.472 30.769 0.00 0.00 0.00 0.86
425 426 7.418337 AAAAGCCTTTCGTCCCATTTTATAT 57.582 32.000 0.00 0.00 0.00 0.86
426 427 6.844097 AAAAGCCTTTCGTCCCATTTTATA 57.156 33.333 0.00 0.00 0.00 0.98
427 428 5.738619 AAAAGCCTTTCGTCCCATTTTAT 57.261 34.783 0.00 0.00 0.00 1.40
428 429 5.534407 GAAAAAGCCTTTCGTCCCATTTTA 58.466 37.500 0.00 0.00 0.00 1.52
429 430 4.377021 GAAAAAGCCTTTCGTCCCATTTT 58.623 39.130 0.00 0.00 0.00 1.82
430 431 3.552068 CGAAAAAGCCTTTCGTCCCATTT 60.552 43.478 18.42 0.00 44.25 2.32
431 432 2.030274 CGAAAAAGCCTTTCGTCCCATT 60.030 45.455 18.42 0.00 44.25 3.16
432 433 1.539827 CGAAAAAGCCTTTCGTCCCAT 59.460 47.619 18.42 0.00 44.25 4.00
433 434 0.948678 CGAAAAAGCCTTTCGTCCCA 59.051 50.000 18.42 0.00 44.25 4.37
434 435 3.767287 CGAAAAAGCCTTTCGTCCC 57.233 52.632 18.42 0.00 44.25 4.46
439 440 2.094752 TGGCATAGCGAAAAAGCCTTTC 60.095 45.455 0.00 0.00 45.42 2.62
440 441 1.892474 TGGCATAGCGAAAAAGCCTTT 59.108 42.857 0.00 0.00 45.42 3.11
441 442 1.544724 TGGCATAGCGAAAAAGCCTT 58.455 45.000 0.00 0.00 45.42 4.35
442 443 1.767759 ATGGCATAGCGAAAAAGCCT 58.232 45.000 0.00 0.00 45.42 4.58
443 444 3.923017 ATATGGCATAGCGAAAAAGCC 57.077 42.857 13.39 0.00 45.41 4.35
444 445 4.229876 GGAATATGGCATAGCGAAAAAGC 58.770 43.478 13.39 0.00 37.41 3.51
445 446 4.024048 ACGGAATATGGCATAGCGAAAAAG 60.024 41.667 13.39 2.06 0.00 2.27
446 447 3.880490 ACGGAATATGGCATAGCGAAAAA 59.120 39.130 13.39 0.00 0.00 1.94
447 448 3.249799 CACGGAATATGGCATAGCGAAAA 59.750 43.478 13.39 0.00 0.00 2.29
448 449 2.805671 CACGGAATATGGCATAGCGAAA 59.194 45.455 13.39 0.00 0.00 3.46
449 450 2.412870 CACGGAATATGGCATAGCGAA 58.587 47.619 13.39 0.00 0.00 4.70
450 451 1.939381 GCACGGAATATGGCATAGCGA 60.939 52.381 13.39 0.00 0.00 4.93
451 452 0.443869 GCACGGAATATGGCATAGCG 59.556 55.000 13.39 6.83 0.00 4.26
460 461 2.485479 GGGTGAGATGTGCACGGAATAT 60.485 50.000 13.13 0.00 37.13 1.28
461 462 1.134521 GGGTGAGATGTGCACGGAATA 60.135 52.381 13.13 0.00 37.13 1.75
464 465 2.171209 CTGGGTGAGATGTGCACGGA 62.171 60.000 13.13 0.00 37.13 4.69
607 621 2.747446 GTCAAATGCTCCCATACAACGT 59.253 45.455 0.00 0.00 0.00 3.99
608 622 2.097466 GGTCAAATGCTCCCATACAACG 59.903 50.000 0.00 0.00 0.00 4.10
634 648 6.017934 AGCACCACGATATCATGTTTTATGTC 60.018 38.462 3.12 0.00 0.00 3.06
722 744 1.610522 CAGGTCCCTTGCAGAAGTTTG 59.389 52.381 0.00 0.00 0.00 2.93
965 1024 6.096846 ACCTTATCACCAAATTTGCAGGTATC 59.903 38.462 12.92 0.00 33.49 2.24
1302 1409 2.235016 CGCCGGCGTAATCATCGTT 61.235 57.895 39.71 0.00 34.35 3.85
1386 1499 1.335182 TCGAGATCGAACCTGCAGATC 59.665 52.381 17.39 12.21 46.30 2.75
1387 1500 1.393603 TCGAGATCGAACCTGCAGAT 58.606 50.000 17.39 2.96 46.30 2.90
1388 1501 2.868253 TCGAGATCGAACCTGCAGA 58.132 52.632 17.39 0.00 46.30 4.26
1704 1935 2.031768 GATGCAGAGGCGGGGATC 59.968 66.667 0.00 0.00 45.35 3.36
1705 1936 2.447379 AGATGCAGAGGCGGGGAT 60.447 61.111 0.00 0.00 45.35 3.85
1706 1937 3.473647 CAGATGCAGAGGCGGGGA 61.474 66.667 0.00 0.00 45.35 4.81
1710 1941 2.696409 ATCGCTCAGATGCAGAGGCG 62.696 60.000 13.38 13.38 45.35 5.52
1724 1955 2.588877 GTGGCCGTATGCATCGCT 60.589 61.111 0.19 0.00 43.89 4.93
1748 1979 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
1787 2019 3.069872 TGTTTAGACGGTGGCTTTAGTGA 59.930 43.478 0.00 0.00 0.00 3.41
1788 2020 3.395639 TGTTTAGACGGTGGCTTTAGTG 58.604 45.455 0.00 0.00 0.00 2.74
1838 2070 4.671569 GCTATCAGCGCCCCCTCG 62.672 72.222 2.29 0.00 0.00 4.63
1855 2087 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
1903 2135 2.103153 TCTGGTTGAGACCTCAGGTT 57.897 50.000 0.00 0.00 46.66 3.50
2134 2527 2.031163 GTGGCGCAGTGGAGACTT 59.969 61.111 10.83 0.00 0.00 3.01
2308 2701 1.993948 GCTACCTCCGGGGGAAACT 60.994 63.158 32.33 6.98 40.03 2.66
2414 2845 2.049063 GTGAAGACCTGCTCGCGT 60.049 61.111 5.77 0.00 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.