Multiple sequence alignment - TraesCS4D01G131000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G131000 chr4D 100.000 2456 0 0 1 2456 117664047 117661592 0.000000e+00 4536.0
1 TraesCS4D01G131000 chr4D 84.298 726 76 22 864 1570 117706510 117705804 0.000000e+00 675.0
2 TraesCS4D01G131000 chr4B 95.173 1326 45 10 300 1614 179750443 179751760 0.000000e+00 2076.0
3 TraesCS4D01G131000 chr4B 83.140 688 80 18 864 1536 179842716 179842050 1.630000e-166 595.0
4 TraesCS4D01G131000 chr4B 90.649 385 22 10 1955 2339 179751928 179752298 1.310000e-137 499.0
5 TraesCS4D01G131000 chr4B 92.157 255 19 1 1 255 179749846 179750099 2.320000e-95 359.0
6 TraesCS4D01G131000 chr4B 90.076 262 21 4 1665 1923 663525719 663525460 3.910000e-88 335.0
7 TraesCS4D01G131000 chr4B 96.296 54 2 0 2400 2453 179752299 179752352 3.360000e-14 89.8
8 TraesCS4D01G131000 chr4A 93.985 1330 58 14 300 1614 456335610 456336932 0.000000e+00 1993.0
9 TraesCS4D01G131000 chr4A 94.988 1217 46 10 300 1508 457567600 457568809 0.000000e+00 1895.0
10 TraesCS4D01G131000 chr4A 84.317 695 79 19 886 1570 456293850 456294524 0.000000e+00 652.0
11 TraesCS4D01G131000 chr4A 93.092 304 18 1 1 301 456335271 456335574 2.240000e-120 442.0
12 TraesCS4D01G131000 chr4A 92.763 304 19 1 1 301 457567261 457567564 1.040000e-118 436.0
13 TraesCS4D01G131000 chr4A 90.881 329 25 2 2125 2453 457575496 457575819 1.040000e-118 436.0
14 TraesCS4D01G131000 chr4A 90.274 329 29 1 2125 2453 456342180 456342505 6.280000e-116 427.0
15 TraesCS4D01G131000 chr4A 90.909 264 19 4 1665 1926 690117101 690116841 1.400000e-92 350.0
16 TraesCS4D01G131000 chr4A 93.382 136 9 0 1921 2056 456336930 456337065 4.140000e-48 202.0
17 TraesCS4D01G131000 chr7D 83.591 646 82 12 864 1494 611445273 611444637 3.520000e-163 584.0
18 TraesCS4D01G131000 chr7D 81.486 740 88 18 847 1570 611459241 611458535 1.650000e-156 562.0
19 TraesCS4D01G131000 chr7B 83.123 634 83 11 907 1526 700630470 700629847 7.670000e-155 556.0
20 TraesCS4D01G131000 chr7B 80.780 744 94 21 848 1566 700724439 700723720 9.990000e-149 536.0
21 TraesCS4D01G131000 chr7A 90.805 261 21 2 1665 1925 529253751 529254008 1.810000e-91 346.0
22 TraesCS4D01G131000 chr3D 91.120 259 18 4 1665 1921 360625700 360625955 1.810000e-91 346.0
23 TraesCS4D01G131000 chr2B 90.805 261 20 3 1665 1923 728401675 728401417 1.810000e-91 346.0
24 TraesCS4D01G131000 chr2B 90.038 261 21 5 1665 1923 491246236 491245979 1.410000e-87 333.0
25 TraesCS4D01G131000 chr6B 90.421 261 21 4 1665 1923 548176671 548176929 8.410000e-90 340.0
26 TraesCS4D01G131000 chr3B 90.114 263 22 3 1664 1924 657101093 657100833 3.030000e-89 339.0
27 TraesCS4D01G131000 chr1B 89.925 268 20 6 1665 1928 308616182 308615918 3.030000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G131000 chr4D 117661592 117664047 2455 True 4536.00 4536 100.000000 1 2456 1 chr4D.!!$R1 2455
1 TraesCS4D01G131000 chr4D 117705804 117706510 706 True 675.00 675 84.298000 864 1570 1 chr4D.!!$R2 706
2 TraesCS4D01G131000 chr4B 179749846 179752352 2506 False 755.95 2076 93.568750 1 2453 4 chr4B.!!$F1 2452
3 TraesCS4D01G131000 chr4B 179842050 179842716 666 True 595.00 595 83.140000 864 1536 1 chr4B.!!$R1 672
4 TraesCS4D01G131000 chr4A 457567261 457568809 1548 False 1165.50 1895 93.875500 1 1508 2 chr4A.!!$F5 1507
5 TraesCS4D01G131000 chr4A 456335271 456337065 1794 False 879.00 1993 93.486333 1 2056 3 chr4A.!!$F4 2055
6 TraesCS4D01G131000 chr4A 456293850 456294524 674 False 652.00 652 84.317000 886 1570 1 chr4A.!!$F1 684
7 TraesCS4D01G131000 chr7D 611444637 611445273 636 True 584.00 584 83.591000 864 1494 1 chr7D.!!$R1 630
8 TraesCS4D01G131000 chr7D 611458535 611459241 706 True 562.00 562 81.486000 847 1570 1 chr7D.!!$R2 723
9 TraesCS4D01G131000 chr7B 700629847 700630470 623 True 556.00 556 83.123000 907 1526 1 chr7B.!!$R1 619
10 TraesCS4D01G131000 chr7B 700723720 700724439 719 True 536.00 536 80.780000 848 1566 1 chr7B.!!$R2 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 1.002502 GACTTTGCCGGTAGCCCTT 60.003 57.895 1.9 0.0 42.71 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 2308 0.033109 ATTAAGGCCCTTCCCAGTGC 60.033 55.0 0.0 0.0 34.51 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.002502 GACTTTGCCGGTAGCCCTT 60.003 57.895 1.90 0.00 42.71 3.95
66 67 1.006043 ACGACAAGATGAGAGGAGGGA 59.994 52.381 0.00 0.00 0.00 4.20
125 126 1.756950 TGCCGCTAGGGTAGGTGAG 60.757 63.158 6.02 0.00 38.44 3.51
129 130 1.455217 GCTAGGGTAGGTGAGGCGA 60.455 63.158 0.00 0.00 0.00 5.54
154 155 5.222130 TGGTGAGGGCTCTTTTTCTTCTATT 60.222 40.000 0.00 0.00 0.00 1.73
160 161 8.427902 AGGGCTCTTTTTCTTCTATTTGAATT 57.572 30.769 0.00 0.00 33.71 2.17
313 617 2.671396 CGTGGAGACCCGTAAAAATCAG 59.329 50.000 0.00 0.00 34.29 2.90
397 708 2.559698 TTTTCGCCATCACTTCCTGA 57.440 45.000 0.00 0.00 0.00 3.86
450 761 2.281139 TTGATGTCCGCGTTGCCA 60.281 55.556 4.92 0.00 0.00 4.92
463 775 1.839424 GTTGCCAAGCCTCATTACCT 58.161 50.000 0.00 0.00 0.00 3.08
502 814 2.551887 TCAATCCACATGTTGAACACCG 59.448 45.455 0.00 0.00 31.85 4.94
507 819 4.138290 TCCACATGTTGAACACCGTTATT 58.862 39.130 0.00 0.00 0.00 1.40
568 880 4.034858 CGATACATGAGCAAGCATTTGACT 59.965 41.667 0.00 0.00 36.36 3.41
575 887 1.200948 GCAAGCATTTGACTCTGGGTC 59.799 52.381 0.00 0.00 44.70 4.46
676 988 3.676172 CGCGTGAACTACTACCAAAATGA 59.324 43.478 0.00 0.00 0.00 2.57
718 1034 1.195900 TGCTAACGCATTGTTTCGTCC 59.804 47.619 0.00 0.00 42.25 4.79
749 1065 2.992593 TGGTCAAGGCAATTATACGCA 58.007 42.857 0.00 0.00 0.00 5.24
756 1072 3.997762 AGGCAATTATACGCATACGGAA 58.002 40.909 0.00 0.00 46.04 4.30
1295 1661 1.153369 CATCCACGGAAGCCACGAT 60.153 57.895 0.00 0.00 34.93 3.73
1497 1881 8.985315 TGGCATTTTTCTAGACAGATATGATT 57.015 30.769 0.00 0.00 0.00 2.57
1530 1927 4.559153 TGCATCGATCGATCACATGTATT 58.441 39.130 27.20 0.76 31.62 1.89
1554 1957 6.912203 TGTACGTGTTCATTCTTTCTTTGA 57.088 33.333 0.00 0.00 0.00 2.69
1611 2014 4.894784 ACGTGTACAGATTCATTTGGAGT 58.105 39.130 0.00 0.00 0.00 3.85
1612 2015 5.305585 ACGTGTACAGATTCATTTGGAGTT 58.694 37.500 0.00 0.00 0.00 3.01
1613 2016 6.460781 ACGTGTACAGATTCATTTGGAGTTA 58.539 36.000 0.00 0.00 0.00 2.24
1614 2017 6.367969 ACGTGTACAGATTCATTTGGAGTTAC 59.632 38.462 0.00 0.00 0.00 2.50
1615 2018 6.367695 CGTGTACAGATTCATTTGGAGTTACA 59.632 38.462 0.00 0.00 0.00 2.41
1616 2019 7.519002 GTGTACAGATTCATTTGGAGTTACAC 58.481 38.462 0.00 0.00 0.00 2.90
1617 2020 6.653320 TGTACAGATTCATTTGGAGTTACACC 59.347 38.462 0.00 0.00 0.00 4.16
1618 2021 5.880901 ACAGATTCATTTGGAGTTACACCT 58.119 37.500 0.00 0.00 0.00 4.00
1619 2022 5.940470 ACAGATTCATTTGGAGTTACACCTC 59.060 40.000 0.00 0.00 0.00 3.85
1620 2023 6.176183 CAGATTCATTTGGAGTTACACCTCT 58.824 40.000 0.00 0.00 0.00 3.69
1621 2024 6.656693 CAGATTCATTTGGAGTTACACCTCTT 59.343 38.462 0.00 0.00 0.00 2.85
1622 2025 6.881602 AGATTCATTTGGAGTTACACCTCTTC 59.118 38.462 0.00 0.00 0.00 2.87
1623 2026 4.906618 TCATTTGGAGTTACACCTCTTCC 58.093 43.478 0.00 0.00 0.00 3.46
1624 2027 4.349636 TCATTTGGAGTTACACCTCTTCCA 59.650 41.667 0.00 0.00 0.00 3.53
1625 2028 4.781775 TTTGGAGTTACACCTCTTCCAA 57.218 40.909 0.00 0.39 34.44 3.53
1626 2029 4.781775 TTGGAGTTACACCTCTTCCAAA 57.218 40.909 0.00 0.00 33.48 3.28
1627 2030 4.781775 TGGAGTTACACCTCTTCCAAAA 57.218 40.909 0.00 0.00 0.00 2.44
1628 2031 5.118729 TGGAGTTACACCTCTTCCAAAAA 57.881 39.130 0.00 0.00 0.00 1.94
1629 2032 5.701224 TGGAGTTACACCTCTTCCAAAAAT 58.299 37.500 0.00 0.00 0.00 1.82
1630 2033 6.843752 TGGAGTTACACCTCTTCCAAAAATA 58.156 36.000 0.00 0.00 0.00 1.40
1631 2034 6.940298 TGGAGTTACACCTCTTCCAAAAATAG 59.060 38.462 0.00 0.00 0.00 1.73
1632 2035 6.127980 GGAGTTACACCTCTTCCAAAAATAGC 60.128 42.308 0.00 0.00 0.00 2.97
1633 2036 6.543735 AGTTACACCTCTTCCAAAAATAGCT 58.456 36.000 0.00 0.00 0.00 3.32
1634 2037 6.655425 AGTTACACCTCTTCCAAAAATAGCTC 59.345 38.462 0.00 0.00 0.00 4.09
1635 2038 4.985538 ACACCTCTTCCAAAAATAGCTCA 58.014 39.130 0.00 0.00 0.00 4.26
1636 2039 5.006386 ACACCTCTTCCAAAAATAGCTCAG 58.994 41.667 0.00 0.00 0.00 3.35
1637 2040 4.013050 ACCTCTTCCAAAAATAGCTCAGC 58.987 43.478 0.00 0.00 0.00 4.26
1638 2041 4.012374 CCTCTTCCAAAAATAGCTCAGCA 58.988 43.478 0.00 0.00 0.00 4.41
1639 2042 4.460382 CCTCTTCCAAAAATAGCTCAGCAA 59.540 41.667 0.00 0.00 0.00 3.91
1640 2043 5.376854 TCTTCCAAAAATAGCTCAGCAAC 57.623 39.130 0.00 0.00 0.00 4.17
1641 2044 5.072741 TCTTCCAAAAATAGCTCAGCAACT 58.927 37.500 0.00 0.00 0.00 3.16
1642 2045 5.182001 TCTTCCAAAAATAGCTCAGCAACTC 59.818 40.000 0.00 0.00 0.00 3.01
1643 2046 4.397420 TCCAAAAATAGCTCAGCAACTCA 58.603 39.130 0.00 0.00 0.00 3.41
1644 2047 4.826733 TCCAAAAATAGCTCAGCAACTCAA 59.173 37.500 0.00 0.00 0.00 3.02
1645 2048 4.919754 CCAAAAATAGCTCAGCAACTCAAC 59.080 41.667 0.00 0.00 0.00 3.18
1646 2049 5.278660 CCAAAAATAGCTCAGCAACTCAACT 60.279 40.000 0.00 0.00 0.00 3.16
1647 2050 6.211515 CAAAAATAGCTCAGCAACTCAACTT 58.788 36.000 0.00 0.00 0.00 2.66
1648 2051 5.619625 AAATAGCTCAGCAACTCAACTTC 57.380 39.130 0.00 0.00 0.00 3.01
1649 2052 1.889545 AGCTCAGCAACTCAACTTCC 58.110 50.000 0.00 0.00 0.00 3.46
1650 2053 0.877743 GCTCAGCAACTCAACTTCCC 59.122 55.000 0.00 0.00 0.00 3.97
1651 2054 1.815408 GCTCAGCAACTCAACTTCCCA 60.815 52.381 0.00 0.00 0.00 4.37
1652 2055 2.575532 CTCAGCAACTCAACTTCCCAA 58.424 47.619 0.00 0.00 0.00 4.12
1653 2056 3.152341 CTCAGCAACTCAACTTCCCAAT 58.848 45.455 0.00 0.00 0.00 3.16
1654 2057 2.886523 TCAGCAACTCAACTTCCCAATG 59.113 45.455 0.00 0.00 0.00 2.82
1655 2058 1.615392 AGCAACTCAACTTCCCAATGC 59.385 47.619 0.00 0.00 0.00 3.56
1656 2059 1.337167 GCAACTCAACTTCCCAATGCC 60.337 52.381 0.00 0.00 0.00 4.40
1657 2060 1.962807 CAACTCAACTTCCCAATGCCA 59.037 47.619 0.00 0.00 0.00 4.92
1658 2061 2.364970 CAACTCAACTTCCCAATGCCAA 59.635 45.455 0.00 0.00 0.00 4.52
1659 2062 2.676748 ACTCAACTTCCCAATGCCAAA 58.323 42.857 0.00 0.00 0.00 3.28
1660 2063 3.037549 ACTCAACTTCCCAATGCCAAAA 58.962 40.909 0.00 0.00 0.00 2.44
1661 2064 3.454082 ACTCAACTTCCCAATGCCAAAAA 59.546 39.130 0.00 0.00 0.00 1.94
1681 2084 3.751479 AAAAACTCAACTCCCCAATGC 57.249 42.857 0.00 0.00 0.00 3.56
1682 2085 2.380064 AAACTCAACTCCCCAATGCA 57.620 45.000 0.00 0.00 0.00 3.96
1683 2086 2.610438 AACTCAACTCCCCAATGCAT 57.390 45.000 0.00 0.00 0.00 3.96
1684 2087 3.737559 AACTCAACTCCCCAATGCATA 57.262 42.857 0.00 0.00 0.00 3.14
1685 2088 3.287867 ACTCAACTCCCCAATGCATAG 57.712 47.619 0.00 0.00 0.00 2.23
1686 2089 2.846206 ACTCAACTCCCCAATGCATAGA 59.154 45.455 0.00 0.00 0.00 1.98
1687 2090 3.461085 ACTCAACTCCCCAATGCATAGAT 59.539 43.478 0.00 0.00 0.00 1.98
1688 2091 3.819337 CTCAACTCCCCAATGCATAGATG 59.181 47.826 0.00 0.00 0.00 2.90
1709 2112 7.807680 AGATGCTTAACTTGTTGTTACTAAGC 58.192 34.615 8.58 8.58 43.07 3.09
1710 2113 7.661847 AGATGCTTAACTTGTTGTTACTAAGCT 59.338 33.333 13.81 0.00 43.13 3.74
1711 2114 7.186021 TGCTTAACTTGTTGTTACTAAGCTC 57.814 36.000 13.81 0.00 43.13 4.09
1712 2115 6.764085 TGCTTAACTTGTTGTTACTAAGCTCA 59.236 34.615 13.81 0.00 43.13 4.26
1713 2116 7.070183 GCTTAACTTGTTGTTACTAAGCTCAC 58.930 38.462 8.36 0.00 41.20 3.51
1714 2117 7.041984 GCTTAACTTGTTGTTACTAAGCTCACT 60.042 37.037 8.36 0.00 41.20 3.41
1715 2118 8.726870 TTAACTTGTTGTTACTAAGCTCACTT 57.273 30.769 0.00 0.00 40.47 3.16
1716 2119 7.625828 AACTTGTTGTTACTAAGCTCACTTT 57.374 32.000 0.00 0.00 37.07 2.66
1717 2120 8.726870 AACTTGTTGTTACTAAGCTCACTTTA 57.273 30.769 0.00 0.00 37.07 1.85
1718 2121 8.904099 ACTTGTTGTTACTAAGCTCACTTTAT 57.096 30.769 0.00 0.00 37.33 1.40
1719 2122 9.338622 ACTTGTTGTTACTAAGCTCACTTTATT 57.661 29.630 0.00 0.00 37.33 1.40
1734 2137 9.237846 GCTCACTTTATTTAATGATTTAGCACC 57.762 33.333 0.00 0.00 0.00 5.01
1745 2148 7.631717 AATGATTTAGCACCTAAACTCTTCC 57.368 36.000 0.00 0.00 38.51 3.46
1746 2149 6.121776 TGATTTAGCACCTAAACTCTTCCA 57.878 37.500 0.00 0.00 38.51 3.53
1747 2150 6.539173 TGATTTAGCACCTAAACTCTTCCAA 58.461 36.000 0.00 0.00 38.51 3.53
1748 2151 6.655003 TGATTTAGCACCTAAACTCTTCCAAG 59.345 38.462 0.00 0.00 38.51 3.61
1749 2152 2.784347 AGCACCTAAACTCTTCCAAGC 58.216 47.619 0.00 0.00 0.00 4.01
1750 2153 2.106511 AGCACCTAAACTCTTCCAAGCA 59.893 45.455 0.00 0.00 0.00 3.91
1751 2154 3.084786 GCACCTAAACTCTTCCAAGCAT 58.915 45.455 0.00 0.00 0.00 3.79
1752 2155 3.507622 GCACCTAAACTCTTCCAAGCATT 59.492 43.478 0.00 0.00 0.00 3.56
1765 2168 3.369546 CAAGCATTGGTCGGTTTCTTT 57.630 42.857 0.00 0.00 43.94 2.52
1766 2169 3.308530 CAAGCATTGGTCGGTTTCTTTC 58.691 45.455 0.00 0.00 43.94 2.62
1767 2170 2.582052 AGCATTGGTCGGTTTCTTTCA 58.418 42.857 0.00 0.00 0.00 2.69
1768 2171 3.157087 AGCATTGGTCGGTTTCTTTCAT 58.843 40.909 0.00 0.00 0.00 2.57
1769 2172 3.573967 AGCATTGGTCGGTTTCTTTCATT 59.426 39.130 0.00 0.00 0.00 2.57
1770 2173 4.039124 AGCATTGGTCGGTTTCTTTCATTT 59.961 37.500 0.00 0.00 0.00 2.32
1771 2174 5.242838 AGCATTGGTCGGTTTCTTTCATTTA 59.757 36.000 0.00 0.00 0.00 1.40
1772 2175 5.923684 GCATTGGTCGGTTTCTTTCATTTAA 59.076 36.000 0.00 0.00 0.00 1.52
1773 2176 6.589907 GCATTGGTCGGTTTCTTTCATTTAAT 59.410 34.615 0.00 0.00 0.00 1.40
1774 2177 7.117667 GCATTGGTCGGTTTCTTTCATTTAATT 59.882 33.333 0.00 0.00 0.00 1.40
1775 2178 7.938563 TTGGTCGGTTTCTTTCATTTAATTG 57.061 32.000 0.00 0.00 0.00 2.32
1776 2179 6.451393 TGGTCGGTTTCTTTCATTTAATTGG 58.549 36.000 0.00 0.00 0.00 3.16
1777 2180 6.041069 TGGTCGGTTTCTTTCATTTAATTGGT 59.959 34.615 0.00 0.00 0.00 3.67
1778 2181 6.926826 GGTCGGTTTCTTTCATTTAATTGGTT 59.073 34.615 0.00 0.00 0.00 3.67
1779 2182 7.439955 GGTCGGTTTCTTTCATTTAATTGGTTT 59.560 33.333 0.00 0.00 0.00 3.27
1780 2183 8.272866 GTCGGTTTCTTTCATTTAATTGGTTTG 58.727 33.333 0.00 0.00 0.00 2.93
1781 2184 7.042389 TCGGTTTCTTTCATTTAATTGGTTTGC 60.042 33.333 0.00 0.00 0.00 3.68
1782 2185 7.359595 GGTTTCTTTCATTTAATTGGTTTGCC 58.640 34.615 0.00 0.00 0.00 4.52
1783 2186 7.228507 GGTTTCTTTCATTTAATTGGTTTGCCT 59.771 33.333 0.00 0.00 35.27 4.75
1784 2187 9.267084 GTTTCTTTCATTTAATTGGTTTGCCTA 57.733 29.630 0.00 0.00 35.27 3.93
1785 2188 9.487790 TTTCTTTCATTTAATTGGTTTGCCTAG 57.512 29.630 0.00 0.00 35.27 3.02
1786 2189 7.610865 TCTTTCATTTAATTGGTTTGCCTAGG 58.389 34.615 3.67 3.67 35.27 3.02
1787 2190 6.926630 TTCATTTAATTGGTTTGCCTAGGT 57.073 33.333 11.31 0.00 35.27 3.08
1788 2191 6.926630 TCATTTAATTGGTTTGCCTAGGTT 57.073 33.333 11.31 0.00 35.27 3.50
1789 2192 6.930731 TCATTTAATTGGTTTGCCTAGGTTC 58.069 36.000 11.31 0.00 35.27 3.62
1790 2193 6.495181 TCATTTAATTGGTTTGCCTAGGTTCA 59.505 34.615 11.31 0.00 35.27 3.18
1791 2194 5.715434 TTAATTGGTTTGCCTAGGTTCAC 57.285 39.130 11.31 4.28 35.27 3.18
1792 2195 1.600023 TTGGTTTGCCTAGGTTCACG 58.400 50.000 11.31 0.00 35.27 4.35
1793 2196 0.887387 TGGTTTGCCTAGGTTCACGC 60.887 55.000 11.31 0.00 35.27 5.34
1794 2197 1.495951 GTTTGCCTAGGTTCACGCG 59.504 57.895 11.31 3.53 0.00 6.01
1795 2198 2.322081 TTTGCCTAGGTTCACGCGC 61.322 57.895 11.31 0.00 0.00 6.86
1796 2199 2.725203 TTTGCCTAGGTTCACGCGCT 62.725 55.000 11.31 0.00 0.00 5.92
1797 2200 2.434359 GCCTAGGTTCACGCGCTT 60.434 61.111 11.31 0.00 0.00 4.68
1798 2201 2.740714 GCCTAGGTTCACGCGCTTG 61.741 63.158 11.31 7.71 0.00 4.01
1799 2202 2.100631 CCTAGGTTCACGCGCTTGG 61.101 63.158 14.45 0.79 0.00 3.61
1800 2203 2.740714 CTAGGTTCACGCGCTTGGC 61.741 63.158 14.45 7.37 38.69 4.52
1801 2204 3.523087 TAGGTTCACGCGCTTGGCA 62.523 57.895 14.45 0.00 43.84 4.92
1802 2205 2.796483 TAGGTTCACGCGCTTGGCAT 62.796 55.000 14.45 7.77 43.84 4.40
1803 2206 2.202349 GTTCACGCGCTTGGCATC 60.202 61.111 14.45 0.00 43.84 3.91
1804 2207 3.787676 TTCACGCGCTTGGCATCG 61.788 61.111 14.45 5.46 43.84 3.84
1808 2211 4.520846 CGCGCTTGGCATCGGTTC 62.521 66.667 5.56 0.00 43.84 3.62
1809 2212 3.127533 GCGCTTGGCATCGGTTCT 61.128 61.111 0.00 0.00 42.87 3.01
1810 2213 2.690778 GCGCTTGGCATCGGTTCTT 61.691 57.895 0.00 0.00 42.87 2.52
1811 2214 1.425428 CGCTTGGCATCGGTTCTTC 59.575 57.895 0.00 0.00 0.00 2.87
1812 2215 1.803289 GCTTGGCATCGGTTCTTCC 59.197 57.895 0.00 0.00 0.00 3.46
1813 2216 0.678048 GCTTGGCATCGGTTCTTCCT 60.678 55.000 0.00 0.00 0.00 3.36
1814 2217 1.089920 CTTGGCATCGGTTCTTCCTG 58.910 55.000 0.00 0.00 0.00 3.86
1815 2218 0.322456 TTGGCATCGGTTCTTCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
1816 2219 1.452108 GGCATCGGTTCTTCCTGGG 60.452 63.158 0.00 0.00 0.00 4.45
1817 2220 1.299976 GCATCGGTTCTTCCTGGGT 59.700 57.895 0.00 0.00 0.00 4.51
1818 2221 0.744771 GCATCGGTTCTTCCTGGGTC 60.745 60.000 0.00 0.00 0.00 4.46
1819 2222 0.613260 CATCGGTTCTTCCTGGGTCA 59.387 55.000 0.00 0.00 0.00 4.02
1820 2223 0.613777 ATCGGTTCTTCCTGGGTCAC 59.386 55.000 0.00 0.00 0.00 3.67
1821 2224 1.003718 CGGTTCTTCCTGGGTCACC 60.004 63.158 0.00 0.00 37.24 4.02
1822 2225 1.764571 CGGTTCTTCCTGGGTCACCA 61.765 60.000 0.00 0.00 46.94 4.17
1830 2233 4.898607 TGGGTCACCAAAGTGCTC 57.101 55.556 0.00 0.00 45.87 4.26
1831 2234 2.230664 TGGGTCACCAAAGTGCTCT 58.769 52.632 0.00 0.00 45.87 4.09
1832 2235 0.108585 TGGGTCACCAAAGTGCTCTC 59.891 55.000 0.00 0.00 45.87 3.20
1833 2236 0.398318 GGGTCACCAAAGTGCTCTCT 59.602 55.000 0.00 0.00 44.16 3.10
1834 2237 1.609320 GGGTCACCAAAGTGCTCTCTC 60.609 57.143 0.00 0.00 44.16 3.20
1835 2238 1.346068 GGTCACCAAAGTGCTCTCTCT 59.654 52.381 0.00 0.00 44.16 3.10
1836 2239 2.611722 GGTCACCAAAGTGCTCTCTCTC 60.612 54.545 0.00 0.00 44.16 3.20
1837 2240 2.298729 GTCACCAAAGTGCTCTCTCTCT 59.701 50.000 0.00 0.00 44.16 3.10
1838 2241 2.560542 TCACCAAAGTGCTCTCTCTCTC 59.439 50.000 0.00 0.00 44.16 3.20
1839 2242 1.899142 ACCAAAGTGCTCTCTCTCTCC 59.101 52.381 0.00 0.00 0.00 3.71
1840 2243 2.178580 CCAAAGTGCTCTCTCTCTCCT 58.821 52.381 0.00 0.00 0.00 3.69
1841 2244 2.166254 CCAAAGTGCTCTCTCTCTCCTC 59.834 54.545 0.00 0.00 0.00 3.71
1842 2245 2.143876 AAGTGCTCTCTCTCTCCTCC 57.856 55.000 0.00 0.00 0.00 4.30
1843 2246 1.298953 AGTGCTCTCTCTCTCCTCCT 58.701 55.000 0.00 0.00 0.00 3.69
1844 2247 1.640670 AGTGCTCTCTCTCTCCTCCTT 59.359 52.381 0.00 0.00 0.00 3.36
1845 2248 2.849943 AGTGCTCTCTCTCTCCTCCTTA 59.150 50.000 0.00 0.00 0.00 2.69
1846 2249 3.268334 AGTGCTCTCTCTCTCCTCCTTAA 59.732 47.826 0.00 0.00 0.00 1.85
1847 2250 4.079212 AGTGCTCTCTCTCTCCTCCTTAAT 60.079 45.833 0.00 0.00 0.00 1.40
1848 2251 4.649218 GTGCTCTCTCTCTCCTCCTTAATT 59.351 45.833 0.00 0.00 0.00 1.40
1849 2252 4.648762 TGCTCTCTCTCTCCTCCTTAATTG 59.351 45.833 0.00 0.00 0.00 2.32
1850 2253 4.649218 GCTCTCTCTCTCCTCCTTAATTGT 59.351 45.833 0.00 0.00 0.00 2.71
1851 2254 5.128663 GCTCTCTCTCTCCTCCTTAATTGTT 59.871 44.000 0.00 0.00 0.00 2.83
1852 2255 6.537453 TCTCTCTCTCCTCCTTAATTGTTG 57.463 41.667 0.00 0.00 0.00 3.33
1853 2256 6.019748 TCTCTCTCTCCTCCTTAATTGTTGT 58.980 40.000 0.00 0.00 0.00 3.32
1854 2257 6.042638 TCTCTCTCCTCCTTAATTGTTGTG 57.957 41.667 0.00 0.00 0.00 3.33
1855 2258 4.579869 TCTCTCCTCCTTAATTGTTGTGC 58.420 43.478 0.00 0.00 0.00 4.57
1856 2259 3.686016 TCTCCTCCTTAATTGTTGTGCC 58.314 45.455 0.00 0.00 0.00 5.01
1857 2260 3.073798 TCTCCTCCTTAATTGTTGTGCCA 59.926 43.478 0.00 0.00 0.00 4.92
1858 2261 4.019174 CTCCTCCTTAATTGTTGTGCCAT 58.981 43.478 0.00 0.00 0.00 4.40
1859 2262 3.763360 TCCTCCTTAATTGTTGTGCCATG 59.237 43.478 0.00 0.00 0.00 3.66
1860 2263 3.511146 CCTCCTTAATTGTTGTGCCATGT 59.489 43.478 0.00 0.00 0.00 3.21
1861 2264 4.380867 CCTCCTTAATTGTTGTGCCATGTC 60.381 45.833 0.00 0.00 0.00 3.06
1862 2265 4.148079 TCCTTAATTGTTGTGCCATGTCA 58.852 39.130 0.00 0.00 0.00 3.58
1863 2266 4.771577 TCCTTAATTGTTGTGCCATGTCAT 59.228 37.500 0.00 0.00 0.00 3.06
1864 2267 5.245751 TCCTTAATTGTTGTGCCATGTCATT 59.754 36.000 0.00 0.00 0.00 2.57
1865 2268 5.933463 CCTTAATTGTTGTGCCATGTCATTT 59.067 36.000 0.00 0.00 0.00 2.32
1866 2269 6.427547 CCTTAATTGTTGTGCCATGTCATTTT 59.572 34.615 0.00 0.00 0.00 1.82
1867 2270 7.041235 CCTTAATTGTTGTGCCATGTCATTTTT 60.041 33.333 0.00 0.00 0.00 1.94
1883 2286 1.297664 TTTTTGCTTGTGTGGCATGC 58.702 45.000 9.90 9.90 45.27 4.06
1884 2287 0.464870 TTTTGCTTGTGTGGCATGCT 59.535 45.000 18.92 0.00 45.28 3.79
1885 2288 0.464870 TTTGCTTGTGTGGCATGCTT 59.535 45.000 18.92 0.00 45.28 3.91
1886 2289 1.326328 TTGCTTGTGTGGCATGCTTA 58.674 45.000 18.92 4.21 45.28 3.09
1887 2290 0.883153 TGCTTGTGTGGCATGCTTAG 59.117 50.000 18.92 7.19 45.28 2.18
1888 2291 0.457337 GCTTGTGTGGCATGCTTAGC 60.457 55.000 18.92 12.89 42.76 3.09
1889 2292 0.883153 CTTGTGTGGCATGCTTAGCA 59.117 50.000 18.92 10.09 44.86 3.49
1890 2293 0.597568 TTGTGTGGCATGCTTAGCAC 59.402 50.000 18.92 16.85 43.04 4.40
1891 2294 0.250858 TGTGTGGCATGCTTAGCACT 60.251 50.000 18.92 0.00 43.04 4.40
1892 2295 0.883833 GTGTGGCATGCTTAGCACTT 59.116 50.000 18.92 0.00 43.04 3.16
1893 2296 0.883153 TGTGGCATGCTTAGCACTTG 59.117 50.000 18.92 6.22 43.04 3.16
1894 2297 0.883833 GTGGCATGCTTAGCACTTGT 59.116 50.000 18.92 0.00 43.04 3.16
1895 2298 1.135575 GTGGCATGCTTAGCACTTGTC 60.136 52.381 18.92 7.31 43.04 3.18
1896 2299 0.453390 GGCATGCTTAGCACTTGTCC 59.547 55.000 18.92 7.22 43.04 4.02
1897 2300 1.167851 GCATGCTTAGCACTTGTCCA 58.832 50.000 9.82 0.00 43.04 4.02
1898 2301 1.135575 GCATGCTTAGCACTTGTCCAC 60.136 52.381 9.82 0.00 43.04 4.02
1899 2302 1.470098 CATGCTTAGCACTTGTCCACC 59.530 52.381 9.82 0.00 43.04 4.61
1900 2303 0.602638 TGCTTAGCACTTGTCCACCG 60.603 55.000 1.39 0.00 31.71 4.94
1901 2304 0.602905 GCTTAGCACTTGTCCACCGT 60.603 55.000 0.00 0.00 0.00 4.83
1902 2305 1.148310 CTTAGCACTTGTCCACCGTG 58.852 55.000 0.00 0.00 0.00 4.94
1903 2306 0.250124 TTAGCACTTGTCCACCGTGG 60.250 55.000 11.73 11.73 39.43 4.94
1904 2307 1.116536 TAGCACTTGTCCACCGTGGA 61.117 55.000 16.73 16.73 45.98 4.02
1911 2314 3.625897 TCCACCGTGGAGCACTGG 61.626 66.667 16.73 0.00 42.67 4.00
1912 2315 4.704833 CCACCGTGGAGCACTGGG 62.705 72.222 12.68 0.00 40.96 4.45
1913 2316 3.625897 CACCGTGGAGCACTGGGA 61.626 66.667 0.00 0.00 34.29 4.37
1914 2317 2.847234 ACCGTGGAGCACTGGGAA 60.847 61.111 0.00 0.00 34.29 3.97
1915 2318 2.046892 CCGTGGAGCACTGGGAAG 60.047 66.667 0.00 0.00 31.34 3.46
1916 2319 2.046892 CGTGGAGCACTGGGAAGG 60.047 66.667 0.00 0.00 31.34 3.46
1917 2320 2.352805 GTGGAGCACTGGGAAGGG 59.647 66.667 0.00 0.00 0.00 3.95
1918 2321 3.650950 TGGAGCACTGGGAAGGGC 61.651 66.667 0.00 0.00 0.00 5.19
1919 2322 4.432741 GGAGCACTGGGAAGGGCC 62.433 72.222 0.00 0.00 0.00 5.80
1938 2341 3.255642 GGCCTTAATGTTCTGCAAACTCA 59.744 43.478 0.00 0.00 0.00 3.41
1940 2343 4.022849 GCCTTAATGTTCTGCAAACTCAGT 60.023 41.667 11.34 1.29 35.63 3.41
1957 2360 8.682895 CAAACTCAGTAGTGTCGAATAATATCG 58.317 37.037 0.00 0.00 38.97 2.92
2016 2555 2.354704 GCTACCAGTGCATCTACAACCA 60.355 50.000 0.00 0.00 0.00 3.67
2036 2575 0.966920 GTCCTCTCAAACGGTCCTCA 59.033 55.000 0.00 0.00 0.00 3.86
2078 2617 1.680338 TCGATGCTCGATGGAAGAGA 58.320 50.000 4.47 0.00 44.82 3.10
2079 2618 2.234143 TCGATGCTCGATGGAAGAGAT 58.766 47.619 4.47 0.00 44.82 2.75
2080 2619 3.412386 TCGATGCTCGATGGAAGAGATA 58.588 45.455 4.47 0.00 44.82 1.98
2081 2620 3.821033 TCGATGCTCGATGGAAGAGATAA 59.179 43.478 4.47 0.00 44.82 1.75
2082 2621 4.083057 TCGATGCTCGATGGAAGAGATAAG 60.083 45.833 4.47 0.00 44.82 1.73
2118 2657 2.556287 CGGACGCCTTCACTTTGC 59.444 61.111 0.00 0.00 0.00 3.68
2132 2671 4.575885 TCACTTTGCCCTTGTATGTCTAC 58.424 43.478 0.00 0.00 0.00 2.59
2138 2677 5.347620 TGCCCTTGTATGTCTACGTTATT 57.652 39.130 0.00 0.00 0.00 1.40
2162 2701 6.447326 TCACATATCTCTATATCCAGCCCAT 58.553 40.000 0.00 0.00 0.00 4.00
2173 2712 8.717717 TCTATATCCAGCCCATATATGAAAAGG 58.282 37.037 14.54 7.73 0.00 3.11
2174 2713 5.865977 ATCCAGCCCATATATGAAAAGGA 57.134 39.130 14.54 14.74 0.00 3.36
2179 2718 7.184387 TCCAGCCCATATATGAAAAGGATATGA 59.816 37.037 14.54 3.50 36.18 2.15
2189 2728 4.653801 TGAAAAGGATATGAGGATGTCCGA 59.346 41.667 0.00 0.00 43.16 4.55
2208 2747 1.308069 ATCATGTTCGGGCAGTGTGC 61.308 55.000 0.00 0.00 44.08 4.57
2237 2776 1.493854 TTTGGCCCACTACGGACCAT 61.494 55.000 0.00 0.00 36.56 3.55
2239 2778 2.513897 GCCCACTACGGACCATGC 60.514 66.667 0.00 0.00 36.56 4.06
2277 2816 9.936759 TTATTCTTTCTTCCTTTTCTCTCTCTC 57.063 33.333 0.00 0.00 0.00 3.20
2278 2817 7.610580 TTCTTTCTTCCTTTTCTCTCTCTCT 57.389 36.000 0.00 0.00 0.00 3.10
2279 2818 7.227049 TCTTTCTTCCTTTTCTCTCTCTCTC 57.773 40.000 0.00 0.00 0.00 3.20
2280 2819 7.010160 TCTTTCTTCCTTTTCTCTCTCTCTCT 58.990 38.462 0.00 0.00 0.00 3.10
2281 2820 6.834168 TTCTTCCTTTTCTCTCTCTCTCTC 57.166 41.667 0.00 0.00 0.00 3.20
2339 2878 1.153086 GTGGGGGCATAGCTCTGTG 60.153 63.158 0.00 0.00 0.00 3.66
2340 2879 2.203266 GGGGGCATAGCTCTGTGC 60.203 66.667 9.70 9.70 45.32 4.57
2345 2884 3.391736 GCATAGCTCTGTGCATGGA 57.608 52.632 12.72 0.00 45.37 3.41
2346 2885 0.942962 GCATAGCTCTGTGCATGGAC 59.057 55.000 10.90 10.90 45.37 4.02
2347 2886 1.744798 GCATAGCTCTGTGCATGGACA 60.745 52.381 19.63 19.63 45.37 4.02
2348 2887 2.635714 CATAGCTCTGTGCATGGACAA 58.364 47.619 21.10 6.32 45.94 3.18
2349 2888 2.857186 TAGCTCTGTGCATGGACAAA 57.143 45.000 21.10 7.41 45.94 2.83
2350 2889 2.211250 AGCTCTGTGCATGGACAAAT 57.789 45.000 21.10 4.64 45.94 2.32
2351 2890 2.089980 AGCTCTGTGCATGGACAAATC 58.910 47.619 21.10 11.95 45.94 2.17
2352 2891 1.814394 GCTCTGTGCATGGACAAATCA 59.186 47.619 21.10 4.85 42.31 2.57
2353 2892 2.159421 GCTCTGTGCATGGACAAATCAG 60.159 50.000 21.10 14.34 42.31 2.90
2354 2893 2.422479 CTCTGTGCATGGACAAATCAGG 59.578 50.000 21.10 8.47 0.00 3.86
2355 2894 1.475280 CTGTGCATGGACAAATCAGGG 59.525 52.381 21.10 3.87 0.00 4.45
2356 2895 1.203038 TGTGCATGGACAAATCAGGGT 60.203 47.619 18.56 0.00 0.00 4.34
2357 2896 1.895131 GTGCATGGACAAATCAGGGTT 59.105 47.619 13.07 0.00 0.00 4.11
2358 2897 2.094545 GTGCATGGACAAATCAGGGTTC 60.095 50.000 13.07 0.00 0.00 3.62
2359 2898 2.170166 GCATGGACAAATCAGGGTTCA 58.830 47.619 0.00 0.00 0.00 3.18
2360 2899 2.562298 GCATGGACAAATCAGGGTTCAA 59.438 45.455 0.00 0.00 0.00 2.69
2361 2900 3.006752 GCATGGACAAATCAGGGTTCAAA 59.993 43.478 0.00 0.00 0.00 2.69
2362 2901 4.813027 CATGGACAAATCAGGGTTCAAAG 58.187 43.478 0.00 0.00 0.00 2.77
2363 2902 2.627699 TGGACAAATCAGGGTTCAAAGC 59.372 45.455 0.00 0.00 0.00 3.51
2364 2903 2.351738 GGACAAATCAGGGTTCAAAGCG 60.352 50.000 0.00 0.00 0.00 4.68
2365 2904 1.613437 ACAAATCAGGGTTCAAAGCGG 59.387 47.619 0.00 0.00 0.00 5.52
2366 2905 1.885887 CAAATCAGGGTTCAAAGCGGA 59.114 47.619 0.00 0.00 0.00 5.54
2367 2906 1.534729 AATCAGGGTTCAAAGCGGAC 58.465 50.000 0.00 0.00 0.00 4.79
2368 2907 0.400213 ATCAGGGTTCAAAGCGGACA 59.600 50.000 0.00 0.00 0.00 4.02
2369 2908 0.400213 TCAGGGTTCAAAGCGGACAT 59.600 50.000 0.00 0.00 0.00 3.06
2370 2909 1.202879 TCAGGGTTCAAAGCGGACATT 60.203 47.619 0.00 0.00 0.00 2.71
2371 2910 1.068333 CAGGGTTCAAAGCGGACATTG 60.068 52.381 0.00 0.00 0.00 2.82
2372 2911 1.202879 AGGGTTCAAAGCGGACATTGA 60.203 47.619 0.00 0.00 31.96 2.57
2373 2912 1.068541 GGGTTCAAAGCGGACATTGAC 60.069 52.381 0.00 0.00 33.49 3.18
2374 2913 1.068541 GGTTCAAAGCGGACATTGACC 60.069 52.381 0.00 0.00 33.49 4.02
2381 2920 3.960237 GGACATTGACCGAACGCA 58.040 55.556 0.00 0.00 0.00 5.24
2382 2921 2.466867 GGACATTGACCGAACGCAT 58.533 52.632 0.00 0.00 0.00 4.73
2383 2922 0.373716 GGACATTGACCGAACGCATC 59.626 55.000 0.00 0.00 0.00 3.91
2384 2923 0.373716 GACATTGACCGAACGCATCC 59.626 55.000 0.00 0.00 0.00 3.51
2385 2924 1.348250 CATTGACCGAACGCATCCG 59.652 57.895 0.00 0.00 41.14 4.18
2386 2925 2.461110 ATTGACCGAACGCATCCGC 61.461 57.895 0.00 0.00 38.22 5.54
2396 2935 3.561429 GCATCCGCGAGTGTTTGA 58.439 55.556 8.23 0.00 0.00 2.69
2397 2936 1.421485 GCATCCGCGAGTGTTTGAG 59.579 57.895 8.23 0.00 0.00 3.02
2398 2937 1.970917 GCATCCGCGAGTGTTTGAGG 61.971 60.000 8.23 0.00 0.00 3.86
2407 2946 3.334691 CGAGTGTTTGAGGAGCCAAATA 58.665 45.455 0.00 0.00 38.18 1.40
2444 2983 1.495148 AGATGCCCTTAAACCCTAGCC 59.505 52.381 0.00 0.00 0.00 3.93
2453 2992 2.287977 AAACCCTAGCCACCAAGAAC 57.712 50.000 0.00 0.00 0.00 3.01
2454 2993 1.145571 AACCCTAGCCACCAAGAACA 58.854 50.000 0.00 0.00 0.00 3.18
2455 2994 0.693049 ACCCTAGCCACCAAGAACAG 59.307 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.078759 CTACCGGCAAAGTCTGAGCG 61.079 60.000 0.00 0.00 0.00 5.03
16 17 1.489560 AAGGGCTACCGGCAAAGTCT 61.490 55.000 0.00 0.00 44.01 3.24
18 19 1.303317 CAAGGGCTACCGGCAAAGT 60.303 57.895 0.00 0.00 44.01 2.66
35 36 1.018910 TCTTGTCGTGTCGTCACTCA 58.981 50.000 10.95 7.21 41.89 3.41
125 126 2.543067 AAAGAGCCCTCACCATCGCC 62.543 60.000 0.00 0.00 0.00 5.54
129 130 3.075134 AGAAGAAAAAGAGCCCTCACCAT 59.925 43.478 0.00 0.00 0.00 3.55
243 244 3.166489 AGTTGGTCTAGCATTACTCGC 57.834 47.619 0.00 0.00 0.00 5.03
313 617 3.945921 GCCTAATTAATTCTATCGGCCCC 59.054 47.826 3.39 0.00 0.00 5.80
397 708 0.179045 GGGCGCTATCACCATTGACT 60.179 55.000 7.64 0.00 33.38 3.41
450 761 4.567857 AGGTGGTATAGGTAATGAGGCTT 58.432 43.478 0.00 0.00 0.00 4.35
463 775 6.895204 TGGATTGATCGATATGAGGTGGTATA 59.105 38.462 0.00 0.00 0.00 1.47
502 814 5.983720 ACAGCATGGATACGTAGACAATAAC 59.016 40.000 0.08 0.00 43.62 1.89
507 819 2.758423 ACACAGCATGGATACGTAGACA 59.242 45.455 0.08 2.79 43.62 3.41
548 860 4.393990 CAGAGTCAAATGCTTGCTCATGTA 59.606 41.667 0.00 0.00 37.78 2.29
568 880 8.170061 CCCAGGAAAATATATTAATGACCCAGA 58.830 37.037 0.00 0.00 0.00 3.86
617 929 0.384309 TCATGGAGTATCGTGGCGTC 59.616 55.000 0.00 0.00 34.37 5.19
618 930 1.000163 GATCATGGAGTATCGTGGCGT 60.000 52.381 0.00 0.00 34.37 5.68
676 988 6.954102 AGCAAGGACACCTTAATTTCCTTATT 59.046 34.615 6.54 0.00 45.01 1.40
718 1034 7.852971 AATTGCCTTGACCAAATTTATGATG 57.147 32.000 0.00 0.00 0.00 3.07
749 1065 5.554822 ATGCGTGTTTTTGTATTCCGTAT 57.445 34.783 0.00 0.00 0.00 3.06
1175 1514 1.404851 GCCTCGAGAACTCTTCTTGGG 60.405 57.143 15.71 0.00 40.87 4.12
1295 1661 3.245443 GGCGTAATCATCGTCGTCA 57.755 52.632 0.00 0.00 0.00 4.35
1497 1881 4.438148 TCGATCGATGCATTAAGTGGAAA 58.562 39.130 15.15 0.00 0.00 3.13
1500 1884 3.989817 TGATCGATCGATGCATTAAGTGG 59.010 43.478 33.86 0.00 34.60 4.00
1530 1927 7.310072 TCAAAGAAAGAATGAACACGTACAA 57.690 32.000 0.00 0.00 0.00 2.41
1554 1957 1.369091 GGGTGATCGTGCGAGCAAAT 61.369 55.000 14.06 0.00 42.40 2.32
1611 2014 6.539173 TGAGCTATTTTTGGAAGAGGTGTAA 58.461 36.000 0.00 0.00 0.00 2.41
1612 2015 6.121776 TGAGCTATTTTTGGAAGAGGTGTA 57.878 37.500 0.00 0.00 0.00 2.90
1613 2016 4.985538 TGAGCTATTTTTGGAAGAGGTGT 58.014 39.130 0.00 0.00 0.00 4.16
1614 2017 4.142513 GCTGAGCTATTTTTGGAAGAGGTG 60.143 45.833 0.00 0.00 0.00 4.00
1615 2018 4.013050 GCTGAGCTATTTTTGGAAGAGGT 58.987 43.478 0.00 0.00 0.00 3.85
1616 2019 4.012374 TGCTGAGCTATTTTTGGAAGAGG 58.988 43.478 5.83 0.00 0.00 3.69
1617 2020 5.182760 AGTTGCTGAGCTATTTTTGGAAGAG 59.817 40.000 5.83 0.00 0.00 2.85
1618 2021 5.072741 AGTTGCTGAGCTATTTTTGGAAGA 58.927 37.500 5.83 0.00 0.00 2.87
1619 2022 5.048504 TGAGTTGCTGAGCTATTTTTGGAAG 60.049 40.000 5.83 0.00 0.00 3.46
1620 2023 4.826733 TGAGTTGCTGAGCTATTTTTGGAA 59.173 37.500 5.83 0.00 0.00 3.53
1621 2024 4.397420 TGAGTTGCTGAGCTATTTTTGGA 58.603 39.130 5.83 0.00 0.00 3.53
1622 2025 4.771590 TGAGTTGCTGAGCTATTTTTGG 57.228 40.909 5.83 0.00 0.00 3.28
1623 2026 5.766222 AGTTGAGTTGCTGAGCTATTTTTG 58.234 37.500 5.83 0.00 0.00 2.44
1624 2027 6.396829 AAGTTGAGTTGCTGAGCTATTTTT 57.603 33.333 5.83 0.00 0.00 1.94
1625 2028 5.048434 GGAAGTTGAGTTGCTGAGCTATTTT 60.048 40.000 5.83 0.00 0.00 1.82
1626 2029 4.457257 GGAAGTTGAGTTGCTGAGCTATTT 59.543 41.667 5.83 0.00 0.00 1.40
1627 2030 4.006319 GGAAGTTGAGTTGCTGAGCTATT 58.994 43.478 5.83 0.00 0.00 1.73
1628 2031 3.604582 GGAAGTTGAGTTGCTGAGCTAT 58.395 45.455 5.83 0.00 0.00 2.97
1629 2032 2.289694 GGGAAGTTGAGTTGCTGAGCTA 60.290 50.000 5.83 0.00 0.00 3.32
1630 2033 1.544314 GGGAAGTTGAGTTGCTGAGCT 60.544 52.381 5.83 0.00 0.00 4.09
1631 2034 0.877743 GGGAAGTTGAGTTGCTGAGC 59.122 55.000 0.00 0.00 0.00 4.26
1632 2035 2.260844 TGGGAAGTTGAGTTGCTGAG 57.739 50.000 0.00 0.00 0.00 3.35
1633 2036 2.727123 TTGGGAAGTTGAGTTGCTGA 57.273 45.000 0.00 0.00 0.00 4.26
1634 2037 2.608752 GCATTGGGAAGTTGAGTTGCTG 60.609 50.000 0.00 0.00 0.00 4.41
1635 2038 1.615392 GCATTGGGAAGTTGAGTTGCT 59.385 47.619 0.00 0.00 0.00 3.91
1636 2039 1.337167 GGCATTGGGAAGTTGAGTTGC 60.337 52.381 0.00 0.00 0.00 4.17
1637 2040 1.962807 TGGCATTGGGAAGTTGAGTTG 59.037 47.619 0.00 0.00 0.00 3.16
1638 2041 2.380064 TGGCATTGGGAAGTTGAGTT 57.620 45.000 0.00 0.00 0.00 3.01
1639 2042 2.380064 TTGGCATTGGGAAGTTGAGT 57.620 45.000 0.00 0.00 0.00 3.41
1640 2043 3.749665 TTTTGGCATTGGGAAGTTGAG 57.250 42.857 0.00 0.00 0.00 3.02
1661 2064 3.037549 TGCATTGGGGAGTTGAGTTTTT 58.962 40.909 0.00 0.00 0.00 1.94
1662 2065 2.676748 TGCATTGGGGAGTTGAGTTTT 58.323 42.857 0.00 0.00 0.00 2.43
1663 2066 2.380064 TGCATTGGGGAGTTGAGTTT 57.620 45.000 0.00 0.00 0.00 2.66
1664 2067 2.610438 ATGCATTGGGGAGTTGAGTT 57.390 45.000 0.00 0.00 0.00 3.01
1665 2068 2.846206 TCTATGCATTGGGGAGTTGAGT 59.154 45.455 3.54 0.00 0.00 3.41
1666 2069 3.565764 TCTATGCATTGGGGAGTTGAG 57.434 47.619 3.54 0.00 0.00 3.02
1667 2070 3.824133 CATCTATGCATTGGGGAGTTGA 58.176 45.455 3.54 0.00 0.00 3.18
1678 2081 8.184192 GTAACAACAAGTTAAGCATCTATGCAT 58.816 33.333 16.74 3.79 46.80 3.96
1679 2082 7.390440 AGTAACAACAAGTTAAGCATCTATGCA 59.610 33.333 16.74 0.00 46.80 3.96
1680 2083 7.752695 AGTAACAACAAGTTAAGCATCTATGC 58.247 34.615 6.84 6.84 46.37 3.14
1683 2086 8.932791 GCTTAGTAACAACAAGTTAAGCATCTA 58.067 33.333 9.69 0.00 43.71 1.98
1684 2087 7.661847 AGCTTAGTAACAACAAGTTAAGCATCT 59.338 33.333 14.59 0.75 45.36 2.90
1685 2088 7.807680 AGCTTAGTAACAACAAGTTAAGCATC 58.192 34.615 14.59 0.00 45.36 3.91
1686 2089 7.444183 TGAGCTTAGTAACAACAAGTTAAGCAT 59.556 33.333 14.59 4.29 45.36 3.79
1687 2090 6.764085 TGAGCTTAGTAACAACAAGTTAAGCA 59.236 34.615 14.59 0.00 45.36 3.91
1688 2091 7.041984 AGTGAGCTTAGTAACAACAAGTTAAGC 60.042 37.037 7.45 7.45 44.20 3.09
1689 2092 8.366671 AGTGAGCTTAGTAACAACAAGTTAAG 57.633 34.615 0.00 0.00 43.90 1.85
1690 2093 8.726870 AAGTGAGCTTAGTAACAACAAGTTAA 57.273 30.769 0.00 0.00 37.53 2.01
1691 2094 8.726870 AAAGTGAGCTTAGTAACAACAAGTTA 57.273 30.769 0.00 0.00 36.67 2.24
1692 2095 7.625828 AAAGTGAGCTTAGTAACAACAAGTT 57.374 32.000 0.00 0.00 38.03 2.66
1693 2096 8.904099 ATAAAGTGAGCTTAGTAACAACAAGT 57.096 30.769 0.00 0.00 33.95 3.16
1708 2111 9.237846 GGTGCTAAATCATTAAATAAAGTGAGC 57.762 33.333 0.00 0.00 0.00 4.26
1719 2122 9.174166 GGAAGAGTTTAGGTGCTAAATCATTAA 57.826 33.333 0.00 0.00 38.07 1.40
1720 2123 8.325787 TGGAAGAGTTTAGGTGCTAAATCATTA 58.674 33.333 0.00 0.00 38.07 1.90
1721 2124 7.175104 TGGAAGAGTTTAGGTGCTAAATCATT 58.825 34.615 0.00 0.00 38.07 2.57
1722 2125 6.721318 TGGAAGAGTTTAGGTGCTAAATCAT 58.279 36.000 0.00 0.00 38.07 2.45
1723 2126 6.121776 TGGAAGAGTTTAGGTGCTAAATCA 57.878 37.500 0.00 0.00 38.07 2.57
1724 2127 6.403746 GCTTGGAAGAGTTTAGGTGCTAAATC 60.404 42.308 0.00 0.00 38.07 2.17
1725 2128 5.416013 GCTTGGAAGAGTTTAGGTGCTAAAT 59.584 40.000 0.00 0.00 38.07 1.40
1726 2129 4.760204 GCTTGGAAGAGTTTAGGTGCTAAA 59.240 41.667 0.00 0.00 34.12 1.85
1727 2130 4.202419 TGCTTGGAAGAGTTTAGGTGCTAA 60.202 41.667 0.00 0.00 0.00 3.09
1728 2131 3.326588 TGCTTGGAAGAGTTTAGGTGCTA 59.673 43.478 0.00 0.00 0.00 3.49
1729 2132 2.106511 TGCTTGGAAGAGTTTAGGTGCT 59.893 45.455 0.00 0.00 0.00 4.40
1730 2133 2.504367 TGCTTGGAAGAGTTTAGGTGC 58.496 47.619 0.00 0.00 0.00 5.01
1731 2134 5.051891 CAATGCTTGGAAGAGTTTAGGTG 57.948 43.478 0.00 0.00 0.00 4.00
1745 2148 3.243367 TGAAAGAAACCGACCAATGCTTG 60.243 43.478 0.00 0.00 0.00 4.01
1746 2149 2.955660 TGAAAGAAACCGACCAATGCTT 59.044 40.909 0.00 0.00 0.00 3.91
1747 2150 2.582052 TGAAAGAAACCGACCAATGCT 58.418 42.857 0.00 0.00 0.00 3.79
1748 2151 3.575965 ATGAAAGAAACCGACCAATGC 57.424 42.857 0.00 0.00 0.00 3.56
1749 2152 8.434661 CAATTAAATGAAAGAAACCGACCAATG 58.565 33.333 0.00 0.00 0.00 2.82
1750 2153 7.602265 CCAATTAAATGAAAGAAACCGACCAAT 59.398 33.333 0.00 0.00 0.00 3.16
1751 2154 6.926272 CCAATTAAATGAAAGAAACCGACCAA 59.074 34.615 0.00 0.00 0.00 3.67
1752 2155 6.041069 ACCAATTAAATGAAAGAAACCGACCA 59.959 34.615 0.00 0.00 0.00 4.02
1753 2156 6.452242 ACCAATTAAATGAAAGAAACCGACC 58.548 36.000 0.00 0.00 0.00 4.79
1754 2157 7.940178 AACCAATTAAATGAAAGAAACCGAC 57.060 32.000 0.00 0.00 0.00 4.79
1755 2158 7.042389 GCAAACCAATTAAATGAAAGAAACCGA 60.042 33.333 0.00 0.00 0.00 4.69
1756 2159 7.068955 GCAAACCAATTAAATGAAAGAAACCG 58.931 34.615 0.00 0.00 0.00 4.44
1757 2160 7.228507 AGGCAAACCAATTAAATGAAAGAAACC 59.771 33.333 0.00 0.00 39.06 3.27
1758 2161 8.153479 AGGCAAACCAATTAAATGAAAGAAAC 57.847 30.769 0.00 0.00 39.06 2.78
1759 2162 9.487790 CTAGGCAAACCAATTAAATGAAAGAAA 57.512 29.630 0.00 0.00 39.06 2.52
1760 2163 8.093927 CCTAGGCAAACCAATTAAATGAAAGAA 58.906 33.333 0.00 0.00 39.06 2.52
1761 2164 7.234577 ACCTAGGCAAACCAATTAAATGAAAGA 59.765 33.333 9.30 0.00 39.06 2.52
1762 2165 7.386059 ACCTAGGCAAACCAATTAAATGAAAG 58.614 34.615 9.30 0.00 39.06 2.62
1763 2166 7.309770 ACCTAGGCAAACCAATTAAATGAAA 57.690 32.000 9.30 0.00 39.06 2.69
1764 2167 6.926630 ACCTAGGCAAACCAATTAAATGAA 57.073 33.333 9.30 0.00 39.06 2.57
1765 2168 6.495181 TGAACCTAGGCAAACCAATTAAATGA 59.505 34.615 9.30 0.00 39.06 2.57
1766 2169 6.589907 GTGAACCTAGGCAAACCAATTAAATG 59.410 38.462 9.30 0.00 39.06 2.32
1767 2170 6.571537 CGTGAACCTAGGCAAACCAATTAAAT 60.572 38.462 9.30 0.00 39.06 1.40
1768 2171 5.278561 CGTGAACCTAGGCAAACCAATTAAA 60.279 40.000 9.30 0.00 39.06 1.52
1769 2172 4.216687 CGTGAACCTAGGCAAACCAATTAA 59.783 41.667 9.30 0.00 39.06 1.40
1770 2173 3.754323 CGTGAACCTAGGCAAACCAATTA 59.246 43.478 9.30 0.00 39.06 1.40
1771 2174 2.556622 CGTGAACCTAGGCAAACCAATT 59.443 45.455 9.30 0.00 39.06 2.32
1772 2175 2.159382 CGTGAACCTAGGCAAACCAAT 58.841 47.619 9.30 0.00 39.06 3.16
1773 2176 1.600023 CGTGAACCTAGGCAAACCAA 58.400 50.000 9.30 0.00 39.06 3.67
1774 2177 0.887387 GCGTGAACCTAGGCAAACCA 60.887 55.000 9.30 0.00 39.06 3.67
1775 2178 1.873863 GCGTGAACCTAGGCAAACC 59.126 57.895 9.30 0.00 0.00 3.27
1776 2179 1.495951 CGCGTGAACCTAGGCAAAC 59.504 57.895 9.30 3.36 0.00 2.93
1777 2180 2.322081 GCGCGTGAACCTAGGCAAA 61.322 57.895 9.30 0.00 0.00 3.68
1778 2181 2.725203 AAGCGCGTGAACCTAGGCAA 62.725 55.000 9.30 0.00 0.00 4.52
1779 2182 3.234630 AAGCGCGTGAACCTAGGCA 62.235 57.895 9.30 0.00 0.00 4.75
1780 2183 2.434359 AAGCGCGTGAACCTAGGC 60.434 61.111 9.30 0.00 0.00 3.93
1781 2184 2.100631 CCAAGCGCGTGAACCTAGG 61.101 63.158 25.23 7.41 0.00 3.02
1782 2185 2.740714 GCCAAGCGCGTGAACCTAG 61.741 63.158 25.23 7.75 0.00 3.02
1783 2186 2.740826 GCCAAGCGCGTGAACCTA 60.741 61.111 25.23 0.00 0.00 3.08
1784 2187 4.927782 TGCCAAGCGCGTGAACCT 62.928 61.111 25.23 0.00 42.08 3.50
1785 2188 3.667429 GATGCCAAGCGCGTGAACC 62.667 63.158 25.23 12.49 42.08 3.62
1786 2189 2.202349 GATGCCAAGCGCGTGAAC 60.202 61.111 25.23 16.09 42.08 3.18
1787 2190 3.787676 CGATGCCAAGCGCGTGAA 61.788 61.111 25.23 12.72 42.08 3.18
1791 2194 4.520846 GAACCGATGCCAAGCGCG 62.521 66.667 0.00 0.00 42.08 6.86
1792 2195 2.583685 GAAGAACCGATGCCAAGCGC 62.584 60.000 0.00 0.00 32.67 5.92
1793 2196 1.425428 GAAGAACCGATGCCAAGCG 59.575 57.895 0.00 0.00 34.18 4.68
1794 2197 0.678048 AGGAAGAACCGATGCCAAGC 60.678 55.000 0.00 0.00 44.74 4.01
1795 2198 1.089920 CAGGAAGAACCGATGCCAAG 58.910 55.000 0.00 0.00 44.74 3.61
1796 2199 0.322456 CCAGGAAGAACCGATGCCAA 60.322 55.000 0.00 0.00 44.74 4.52
1797 2200 1.299648 CCAGGAAGAACCGATGCCA 59.700 57.895 0.00 0.00 44.74 4.92
1798 2201 1.452108 CCCAGGAAGAACCGATGCC 60.452 63.158 0.00 0.00 44.74 4.40
1799 2202 0.744771 GACCCAGGAAGAACCGATGC 60.745 60.000 0.00 0.00 44.74 3.91
1800 2203 0.613260 TGACCCAGGAAGAACCGATG 59.387 55.000 0.00 0.00 44.74 3.84
1801 2204 0.613777 GTGACCCAGGAAGAACCGAT 59.386 55.000 0.00 0.00 44.74 4.18
1802 2205 1.477685 GGTGACCCAGGAAGAACCGA 61.478 60.000 0.00 0.00 44.74 4.69
1803 2206 1.003718 GGTGACCCAGGAAGAACCG 60.004 63.158 0.00 0.00 44.74 4.44
1804 2207 0.476771 TTGGTGACCCAGGAAGAACC 59.523 55.000 0.00 0.00 43.15 3.62
1805 2208 2.230660 CTTTGGTGACCCAGGAAGAAC 58.769 52.381 0.00 0.00 43.15 3.01
1806 2209 1.850345 ACTTTGGTGACCCAGGAAGAA 59.150 47.619 0.00 0.00 43.15 2.52
1807 2210 1.142870 CACTTTGGTGACCCAGGAAGA 59.857 52.381 0.00 0.00 45.61 2.87
1808 2211 1.609208 CACTTTGGTGACCCAGGAAG 58.391 55.000 0.00 0.97 45.61 3.46
1809 2212 0.467290 GCACTTTGGTGACCCAGGAA 60.467 55.000 0.00 0.00 45.61 3.36
1810 2213 1.150536 GCACTTTGGTGACCCAGGA 59.849 57.895 0.00 0.00 45.61 3.86
1811 2214 0.890996 GAGCACTTTGGTGACCCAGG 60.891 60.000 0.00 0.00 45.61 4.45
1812 2215 0.109342 AGAGCACTTTGGTGACCCAG 59.891 55.000 0.00 0.00 45.61 4.45
1813 2216 0.108585 GAGAGCACTTTGGTGACCCA 59.891 55.000 0.00 0.00 45.61 4.51
1814 2217 0.398318 AGAGAGCACTTTGGTGACCC 59.602 55.000 0.00 0.00 45.61 4.46
1815 2218 1.346068 AGAGAGAGCACTTTGGTGACC 59.654 52.381 0.00 0.00 45.61 4.02
1816 2219 2.298729 AGAGAGAGAGCACTTTGGTGAC 59.701 50.000 0.00 0.00 45.61 3.67
1817 2220 2.560542 GAGAGAGAGAGCACTTTGGTGA 59.439 50.000 0.00 0.00 45.61 4.02
1818 2221 2.353605 GGAGAGAGAGAGCACTTTGGTG 60.354 54.545 0.00 0.00 45.53 4.17
1819 2222 1.899142 GGAGAGAGAGAGCACTTTGGT 59.101 52.381 0.00 0.00 0.00 3.67
1820 2223 2.166254 GAGGAGAGAGAGAGCACTTTGG 59.834 54.545 0.00 0.00 0.00 3.28
1821 2224 2.166254 GGAGGAGAGAGAGAGCACTTTG 59.834 54.545 0.00 0.00 0.00 2.77
1822 2225 2.042979 AGGAGGAGAGAGAGAGCACTTT 59.957 50.000 0.00 0.00 0.00 2.66
1823 2226 1.640670 AGGAGGAGAGAGAGAGCACTT 59.359 52.381 0.00 0.00 0.00 3.16
1824 2227 1.298953 AGGAGGAGAGAGAGAGCACT 58.701 55.000 0.00 0.00 0.00 4.40
1825 2228 2.143876 AAGGAGGAGAGAGAGAGCAC 57.856 55.000 0.00 0.00 0.00 4.40
1826 2229 4.534647 ATTAAGGAGGAGAGAGAGAGCA 57.465 45.455 0.00 0.00 0.00 4.26
1827 2230 4.649218 ACAATTAAGGAGGAGAGAGAGAGC 59.351 45.833 0.00 0.00 0.00 4.09
1828 2231 6.154363 ACAACAATTAAGGAGGAGAGAGAGAG 59.846 42.308 0.00 0.00 0.00 3.20
1829 2232 6.019748 ACAACAATTAAGGAGGAGAGAGAGA 58.980 40.000 0.00 0.00 0.00 3.10
1830 2233 6.105333 CACAACAATTAAGGAGGAGAGAGAG 58.895 44.000 0.00 0.00 0.00 3.20
1831 2234 5.569630 GCACAACAATTAAGGAGGAGAGAGA 60.570 44.000 0.00 0.00 0.00 3.10
1832 2235 4.633565 GCACAACAATTAAGGAGGAGAGAG 59.366 45.833 0.00 0.00 0.00 3.20
1833 2236 4.565652 GGCACAACAATTAAGGAGGAGAGA 60.566 45.833 0.00 0.00 0.00 3.10
1834 2237 3.691609 GGCACAACAATTAAGGAGGAGAG 59.308 47.826 0.00 0.00 0.00 3.20
1835 2238 3.073798 TGGCACAACAATTAAGGAGGAGA 59.926 43.478 0.00 0.00 31.92 3.71
1836 2239 3.420893 TGGCACAACAATTAAGGAGGAG 58.579 45.455 0.00 0.00 31.92 3.69
1837 2240 3.517296 TGGCACAACAATTAAGGAGGA 57.483 42.857 0.00 0.00 31.92 3.71
1864 2267 1.134461 AGCATGCCACACAAGCAAAAA 60.134 42.857 15.66 0.00 45.45 1.94
1865 2268 0.464870 AGCATGCCACACAAGCAAAA 59.535 45.000 15.66 0.00 45.45 2.44
1866 2269 0.464870 AAGCATGCCACACAAGCAAA 59.535 45.000 15.66 0.00 45.45 3.68
1867 2270 1.270274 CTAAGCATGCCACACAAGCAA 59.730 47.619 15.66 0.00 45.45 3.91
1868 2271 0.883153 CTAAGCATGCCACACAAGCA 59.117 50.000 15.66 0.00 45.45 3.91
1869 2272 0.457337 GCTAAGCATGCCACACAAGC 60.457 55.000 15.66 10.58 43.36 4.01
1870 2273 0.883153 TGCTAAGCATGCCACACAAG 59.117 50.000 15.66 4.22 31.71 3.16
1871 2274 0.597568 GTGCTAAGCATGCCACACAA 59.402 50.000 15.66 0.00 41.91 3.33
1872 2275 0.250858 AGTGCTAAGCATGCCACACA 60.251 50.000 23.50 12.93 41.91 3.72
1873 2276 0.883833 AAGTGCTAAGCATGCCACAC 59.116 50.000 21.72 19.57 41.91 3.82
1874 2277 0.883153 CAAGTGCTAAGCATGCCACA 59.117 50.000 21.72 10.60 41.91 4.17
1875 2278 0.883833 ACAAGTGCTAAGCATGCCAC 59.116 50.000 15.66 15.08 41.91 5.01
1876 2279 1.167851 GACAAGTGCTAAGCATGCCA 58.832 50.000 15.66 1.49 41.91 4.92
1877 2280 0.453390 GGACAAGTGCTAAGCATGCC 59.547 55.000 15.66 0.00 41.91 4.40
1878 2281 1.135575 GTGGACAAGTGCTAAGCATGC 60.136 52.381 10.51 10.51 41.91 4.06
1879 2282 1.470098 GGTGGACAAGTGCTAAGCATG 59.530 52.381 0.00 0.00 41.91 4.06
1880 2283 1.826385 GGTGGACAAGTGCTAAGCAT 58.174 50.000 0.00 0.00 41.91 3.79
1881 2284 0.602638 CGGTGGACAAGTGCTAAGCA 60.603 55.000 0.00 0.00 35.60 3.91
1882 2285 0.602905 ACGGTGGACAAGTGCTAAGC 60.603 55.000 0.00 0.00 0.00 3.09
1883 2286 1.148310 CACGGTGGACAAGTGCTAAG 58.852 55.000 0.00 0.00 0.00 2.18
1884 2287 0.250124 CCACGGTGGACAAGTGCTAA 60.250 55.000 22.77 0.00 40.96 3.09
1885 2288 1.116536 TCCACGGTGGACAAGTGCTA 61.117 55.000 25.53 0.19 42.67 3.49
1886 2289 2.111043 CCACGGTGGACAAGTGCT 59.889 61.111 22.77 0.00 40.96 4.40
1887 2290 1.961277 CTCCACGGTGGACAAGTGC 60.961 63.158 25.53 0.00 42.67 4.40
1888 2291 1.961277 GCTCCACGGTGGACAAGTG 60.961 63.158 25.53 16.23 42.67 3.16
1889 2292 2.426023 GCTCCACGGTGGACAAGT 59.574 61.111 25.53 0.00 42.67 3.16
1890 2293 1.961277 GTGCTCCACGGTGGACAAG 60.961 63.158 25.53 16.94 42.67 3.16
1891 2294 2.110213 GTGCTCCACGGTGGACAA 59.890 61.111 25.53 13.71 42.67 3.18
1892 2295 2.842462 AGTGCTCCACGGTGGACA 60.842 61.111 25.53 22.79 42.67 4.02
1893 2296 2.357517 CAGTGCTCCACGGTGGAC 60.358 66.667 25.53 20.72 42.67 4.02
1894 2297 3.625897 CCAGTGCTCCACGGTGGA 61.626 66.667 27.17 27.17 45.98 4.02
1895 2298 4.704833 CCCAGTGCTCCACGGTGG 62.705 72.222 21.27 21.27 39.64 4.61
1896 2299 3.177194 TTCCCAGTGCTCCACGGTG 62.177 63.158 0.00 0.00 39.64 4.94
1897 2300 2.847234 TTCCCAGTGCTCCACGGT 60.847 61.111 0.00 0.00 39.64 4.83
1898 2301 2.046892 CTTCCCAGTGCTCCACGG 60.047 66.667 0.00 0.00 39.64 4.94
1899 2302 2.046892 CCTTCCCAGTGCTCCACG 60.047 66.667 0.00 0.00 39.64 4.94
1900 2303 2.352805 CCCTTCCCAGTGCTCCAC 59.647 66.667 0.00 0.00 34.10 4.02
1901 2304 3.650950 GCCCTTCCCAGTGCTCCA 61.651 66.667 0.00 0.00 0.00 3.86
1902 2305 4.432741 GGCCCTTCCCAGTGCTCC 62.433 72.222 0.00 0.00 0.00 4.70
1903 2306 1.562672 TAAGGCCCTTCCCAGTGCTC 61.563 60.000 0.00 0.00 34.51 4.26
1904 2307 1.140134 TTAAGGCCCTTCCCAGTGCT 61.140 55.000 0.00 0.00 34.51 4.40
1905 2308 0.033109 ATTAAGGCCCTTCCCAGTGC 60.033 55.000 0.00 0.00 34.51 4.40
1906 2309 1.005924 ACATTAAGGCCCTTCCCAGTG 59.994 52.381 0.00 0.00 34.51 3.66
1907 2310 1.382914 ACATTAAGGCCCTTCCCAGT 58.617 50.000 0.00 0.00 34.51 4.00
1908 2311 2.024941 AGAACATTAAGGCCCTTCCCAG 60.025 50.000 0.00 0.00 34.51 4.45
1909 2312 2.000048 AGAACATTAAGGCCCTTCCCA 59.000 47.619 0.00 0.00 34.51 4.37
1910 2313 2.379005 CAGAACATTAAGGCCCTTCCC 58.621 52.381 0.00 0.00 34.51 3.97
1911 2314 1.751351 GCAGAACATTAAGGCCCTTCC 59.249 52.381 0.00 0.00 0.00 3.46
1912 2315 2.446435 TGCAGAACATTAAGGCCCTTC 58.554 47.619 0.00 0.00 0.00 3.46
1913 2316 2.603075 TGCAGAACATTAAGGCCCTT 57.397 45.000 0.00 0.00 0.00 3.95
1914 2317 2.562738 GTTTGCAGAACATTAAGGCCCT 59.437 45.455 0.00 0.00 0.00 5.19
1915 2318 2.562738 AGTTTGCAGAACATTAAGGCCC 59.437 45.455 0.00 0.00 0.00 5.80
1916 2319 3.255642 TGAGTTTGCAGAACATTAAGGCC 59.744 43.478 0.00 0.00 0.00 5.19
1917 2320 4.022849 ACTGAGTTTGCAGAACATTAAGGC 60.023 41.667 12.28 0.00 39.20 4.35
1918 2321 5.695851 ACTGAGTTTGCAGAACATTAAGG 57.304 39.130 12.28 0.00 39.20 2.69
1919 2322 7.041780 ACACTACTGAGTTTGCAGAACATTAAG 60.042 37.037 12.28 7.48 39.20 1.85
1938 2341 7.709947 TCCAAACGATATTATTCGACACTACT 58.290 34.615 0.31 0.00 41.62 2.57
1940 2343 7.709947 ACTCCAAACGATATTATTCGACACTA 58.290 34.615 0.31 0.00 41.62 2.74
1957 2360 6.273071 ACTTTGCAGAACATTAACTCCAAAC 58.727 36.000 0.00 0.00 0.00 2.93
2016 2555 1.258676 GAGGACCGTTTGAGAGGACT 58.741 55.000 0.00 0.00 0.00 3.85
2050 2589 2.583593 GAGCATCGACCGGACTGC 60.584 66.667 9.46 9.53 34.85 4.40
2061 2600 5.384063 TCTTATCTCTTCCATCGAGCATC 57.616 43.478 0.00 0.00 0.00 3.91
2098 2637 0.320073 CAAAGTGAAGGCGTCCGGTA 60.320 55.000 0.00 0.00 0.00 4.02
2118 2657 6.334989 TGTGAATAACGTAGACATACAAGGG 58.665 40.000 0.00 0.00 31.76 3.95
2132 2671 9.457110 GCTGGATATAGAGATATGTGAATAACG 57.543 37.037 0.00 0.00 0.00 3.18
2138 2677 5.842339 TGGGCTGGATATAGAGATATGTGA 58.158 41.667 0.00 0.00 0.00 3.58
2150 2689 7.529534 TCCTTTTCATATATGGGCTGGATAT 57.470 36.000 12.78 0.00 0.00 1.63
2162 2701 8.478066 CGGACATCCTCATATCCTTTTCATATA 58.522 37.037 0.00 0.00 0.00 0.86
2173 2712 5.336150 ACATGATCGGACATCCTCATATC 57.664 43.478 0.00 0.00 31.50 1.63
2174 2713 5.623141 CGAACATGATCGGACATCCTCATAT 60.623 44.000 16.83 0.00 39.12 1.78
2179 2718 2.515926 CGAACATGATCGGACATCCT 57.484 50.000 16.83 0.00 39.12 3.24
2189 2728 1.308069 GCACACTGCCCGAACATGAT 61.308 55.000 0.00 0.00 37.42 2.45
2208 2747 3.297134 AGTGGGCCAAATACTATGTGG 57.703 47.619 8.40 1.09 35.39 4.17
2267 2806 8.780616 AATAATTGATGGAGAGAGAGAGAGAA 57.219 34.615 0.00 0.00 0.00 2.87
2277 2816 7.246311 GTCACACACAAATAATTGATGGAGAG 58.754 38.462 0.00 0.00 38.94 3.20
2278 2817 6.150976 GGTCACACACAAATAATTGATGGAGA 59.849 38.462 0.00 0.00 38.94 3.71
2279 2818 6.324819 GGTCACACACAAATAATTGATGGAG 58.675 40.000 0.00 0.00 38.94 3.86
2280 2819 5.184864 GGGTCACACACAAATAATTGATGGA 59.815 40.000 0.00 0.00 38.94 3.41
2281 2820 5.047448 TGGGTCACACACAAATAATTGATGG 60.047 40.000 0.00 0.00 38.94 3.51
2317 2856 0.548510 AGAGCTATGCCCCCACTTTC 59.451 55.000 0.00 0.00 0.00 2.62
2339 2878 2.170166 TGAACCCTGATTTGTCCATGC 58.830 47.619 0.00 0.00 0.00 4.06
2340 2879 4.813027 CTTTGAACCCTGATTTGTCCATG 58.187 43.478 0.00 0.00 0.00 3.66
2341 2880 3.259123 GCTTTGAACCCTGATTTGTCCAT 59.741 43.478 0.00 0.00 0.00 3.41
2342 2881 2.627699 GCTTTGAACCCTGATTTGTCCA 59.372 45.455 0.00 0.00 0.00 4.02
2343 2882 2.351738 CGCTTTGAACCCTGATTTGTCC 60.352 50.000 0.00 0.00 0.00 4.02
2344 2883 2.351738 CCGCTTTGAACCCTGATTTGTC 60.352 50.000 0.00 0.00 0.00 3.18
2345 2884 1.613437 CCGCTTTGAACCCTGATTTGT 59.387 47.619 0.00 0.00 0.00 2.83
2346 2885 1.885887 TCCGCTTTGAACCCTGATTTG 59.114 47.619 0.00 0.00 0.00 2.32
2347 2886 1.886542 GTCCGCTTTGAACCCTGATTT 59.113 47.619 0.00 0.00 0.00 2.17
2348 2887 1.202879 TGTCCGCTTTGAACCCTGATT 60.203 47.619 0.00 0.00 0.00 2.57
2349 2888 0.400213 TGTCCGCTTTGAACCCTGAT 59.600 50.000 0.00 0.00 0.00 2.90
2350 2889 0.400213 ATGTCCGCTTTGAACCCTGA 59.600 50.000 0.00 0.00 0.00 3.86
2351 2890 1.068333 CAATGTCCGCTTTGAACCCTG 60.068 52.381 0.00 0.00 33.22 4.45
2352 2891 1.202879 TCAATGTCCGCTTTGAACCCT 60.203 47.619 0.00 0.00 36.32 4.34
2353 2892 1.068541 GTCAATGTCCGCTTTGAACCC 60.069 52.381 0.00 0.00 39.45 4.11
2354 2893 1.068541 GGTCAATGTCCGCTTTGAACC 60.069 52.381 0.00 0.00 39.28 3.62
2355 2894 1.399727 CGGTCAATGTCCGCTTTGAAC 60.400 52.381 5.94 0.00 40.78 3.18
2356 2895 0.871722 CGGTCAATGTCCGCTTTGAA 59.128 50.000 5.94 0.00 41.48 2.69
2357 2896 0.034198 TCGGTCAATGTCCGCTTTGA 59.966 50.000 13.79 0.00 46.49 2.69
2358 2897 0.871722 TTCGGTCAATGTCCGCTTTG 59.128 50.000 13.79 0.00 46.49 2.77
2359 2898 0.872388 GTTCGGTCAATGTCCGCTTT 59.128 50.000 13.79 0.00 46.49 3.51
2360 2899 1.289109 CGTTCGGTCAATGTCCGCTT 61.289 55.000 13.79 0.00 46.49 4.68
2361 2900 1.736645 CGTTCGGTCAATGTCCGCT 60.737 57.895 13.79 0.00 46.49 5.52
2362 2901 2.776072 CGTTCGGTCAATGTCCGC 59.224 61.111 13.79 0.69 46.49 5.54
2364 2903 0.373716 GATGCGTTCGGTCAATGTCC 59.626 55.000 0.00 0.00 0.00 4.02
2365 2904 0.373716 GGATGCGTTCGGTCAATGTC 59.626 55.000 0.00 0.00 0.00 3.06
2366 2905 1.358725 CGGATGCGTTCGGTCAATGT 61.359 55.000 0.00 0.00 0.00 2.71
2367 2906 1.348250 CGGATGCGTTCGGTCAATG 59.652 57.895 0.00 0.00 0.00 2.82
2368 2907 2.461110 GCGGATGCGTTCGGTCAAT 61.461 57.895 9.06 0.00 0.00 2.57
2369 2908 3.115892 GCGGATGCGTTCGGTCAA 61.116 61.111 9.06 0.00 0.00 3.18
2379 2918 1.421485 CTCAAACACTCGCGGATGC 59.579 57.895 6.13 0.00 37.91 3.91
2380 2919 0.389817 TCCTCAAACACTCGCGGATG 60.390 55.000 6.13 7.71 0.00 3.51
2381 2920 0.108615 CTCCTCAAACACTCGCGGAT 60.109 55.000 6.13 0.00 0.00 4.18
2382 2921 1.289066 CTCCTCAAACACTCGCGGA 59.711 57.895 6.13 0.00 0.00 5.54
2383 2922 2.383527 GCTCCTCAAACACTCGCGG 61.384 63.158 6.13 0.00 0.00 6.46
2384 2923 2.383527 GGCTCCTCAAACACTCGCG 61.384 63.158 0.00 0.00 0.00 5.87
2385 2924 0.884704 TTGGCTCCTCAAACACTCGC 60.885 55.000 0.00 0.00 0.00 5.03
2386 2925 1.593196 TTTGGCTCCTCAAACACTCG 58.407 50.000 0.00 0.00 32.39 4.18
2387 2926 4.439289 GCATATTTGGCTCCTCAAACACTC 60.439 45.833 0.00 0.00 39.13 3.51
2388 2927 3.445096 GCATATTTGGCTCCTCAAACACT 59.555 43.478 0.00 0.00 39.13 3.55
2389 2928 3.429410 GGCATATTTGGCTCCTCAAACAC 60.429 47.826 2.36 0.00 44.68 3.32
2390 2929 2.760092 GGCATATTTGGCTCCTCAAACA 59.240 45.455 2.36 0.00 44.68 2.83
2391 2930 3.443099 GGCATATTTGGCTCCTCAAAC 57.557 47.619 2.36 0.00 44.68 2.93
2407 2946 2.897271 TCTACAACCACAATGGGCAT 57.103 45.000 0.00 0.00 43.37 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.