Multiple sequence alignment - TraesCS4D01G129600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G129600 chr4D 100.000 2957 0 0 1 2957 115120422 115123378 0.000000e+00 5461.0
1 TraesCS4D01G129600 chr4D 90.136 882 42 20 1603 2481 447979465 447980304 0.000000e+00 1105.0
2 TraesCS4D01G129600 chr4D 96.248 533 20 0 1 533 301309724 301310256 0.000000e+00 874.0
3 TraesCS4D01G129600 chr4D 93.809 533 31 2 1 532 503682327 503681796 0.000000e+00 800.0
4 TraesCS4D01G129600 chr4D 93.469 490 31 1 2468 2957 472132307 472131819 0.000000e+00 726.0
5 TraesCS4D01G129600 chr4D 93.075 491 32 2 2468 2957 399303979 399304468 0.000000e+00 717.0
6 TraesCS4D01G129600 chr4A 94.283 1959 71 19 534 2481 462205519 462203591 0.000000e+00 2959.0
7 TraesCS4D01G129600 chr4A 92.752 883 38 11 1602 2481 611199247 611200106 0.000000e+00 1253.0
8 TraesCS4D01G129600 chr4A 91.026 78 7 0 1506 1583 27665579 27665656 4.030000e-19 106.0
9 TraesCS4D01G129600 chr4B 93.384 1451 49 20 534 1974 175560708 175562121 0.000000e+00 2104.0
10 TraesCS4D01G129600 chr4B 91.974 461 21 4 2032 2481 175562146 175562601 1.500000e-177 632.0
11 TraesCS4D01G129600 chr6D 93.167 922 42 9 1553 2471 163352695 163353598 0.000000e+00 1334.0
12 TraesCS4D01G129600 chr6D 94.371 533 29 1 1 532 77815022 77815554 0.000000e+00 817.0
13 TraesCS4D01G129600 chr2B 93.998 883 33 11 1602 2481 654362864 654361999 0.000000e+00 1319.0
14 TraesCS4D01G129600 chr2B 88.889 54 6 0 1366 1419 66199483 66199430 1.900000e-07 67.6
15 TraesCS4D01G129600 chr7B 92.375 918 61 6 1553 2470 109172678 109171770 0.000000e+00 1299.0
16 TraesCS4D01G129600 chr7B 92.986 884 38 12 1602 2481 686929072 686929935 0.000000e+00 1267.0
17 TraesCS4D01G129600 chr5B 92.865 883 39 9 1602 2481 614981710 614980849 0.000000e+00 1260.0
18 TraesCS4D01G129600 chr3D 90.870 931 48 20 1553 2481 554391669 554392564 0.000000e+00 1214.0
19 TraesCS4D01G129600 chr3D 95.370 540 23 2 1 540 399666574 399666037 0.000000e+00 857.0
20 TraesCS4D01G129600 chr2A 92.948 709 30 11 1602 2307 711070376 711071067 0.000000e+00 1014.0
21 TraesCS4D01G129600 chr2D 95.872 533 15 2 1 533 627335541 627335016 0.000000e+00 856.0
22 TraesCS4D01G129600 chr2D 93.996 533 32 0 1 533 166111513 166110981 0.000000e+00 808.0
23 TraesCS4D01G129600 chr2D 91.948 534 41 2 1 533 77557622 77557090 0.000000e+00 747.0
24 TraesCS4D01G129600 chr7D 94.831 503 25 1 1 502 452968127 452968629 0.000000e+00 784.0
25 TraesCS4D01G129600 chr7D 93.075 491 33 1 2468 2957 417992842 417992352 0.000000e+00 717.0
26 TraesCS4D01G129600 chr5D 93.233 532 36 0 1 532 384426161 384425630 0.000000e+00 784.0
27 TraesCS4D01G129600 chr5D 93.483 491 31 1 2468 2957 500322187 500322677 0.000000e+00 728.0
28 TraesCS4D01G129600 chr5D 93.279 491 31 2 2468 2957 266688718 266689207 0.000000e+00 723.0
29 TraesCS4D01G129600 chr1B 94.661 487 21 2 2471 2957 348101112 348100631 0.000000e+00 750.0
30 TraesCS4D01G129600 chr5A 93.469 490 31 1 2468 2957 662225162 662224674 0.000000e+00 726.0
31 TraesCS4D01G129600 chr1D 93.279 491 31 2 2468 2957 171331783 171332272 0.000000e+00 723.0
32 TraesCS4D01G129600 chr1A 92.872 491 33 2 2468 2957 563165987 563166476 0.000000e+00 712.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G129600 chr4D 115120422 115123378 2956 False 5461 5461 100.000 1 2957 1 chr4D.!!$F1 2956
1 TraesCS4D01G129600 chr4D 447979465 447980304 839 False 1105 1105 90.136 1603 2481 1 chr4D.!!$F4 878
2 TraesCS4D01G129600 chr4D 301309724 301310256 532 False 874 874 96.248 1 533 1 chr4D.!!$F2 532
3 TraesCS4D01G129600 chr4D 503681796 503682327 531 True 800 800 93.809 1 532 1 chr4D.!!$R2 531
4 TraesCS4D01G129600 chr4A 462203591 462205519 1928 True 2959 2959 94.283 534 2481 1 chr4A.!!$R1 1947
5 TraesCS4D01G129600 chr4A 611199247 611200106 859 False 1253 1253 92.752 1602 2481 1 chr4A.!!$F2 879
6 TraesCS4D01G129600 chr4B 175560708 175562601 1893 False 1368 2104 92.679 534 2481 2 chr4B.!!$F1 1947
7 TraesCS4D01G129600 chr6D 163352695 163353598 903 False 1334 1334 93.167 1553 2471 1 chr6D.!!$F2 918
8 TraesCS4D01G129600 chr6D 77815022 77815554 532 False 817 817 94.371 1 532 1 chr6D.!!$F1 531
9 TraesCS4D01G129600 chr2B 654361999 654362864 865 True 1319 1319 93.998 1602 2481 1 chr2B.!!$R2 879
10 TraesCS4D01G129600 chr7B 109171770 109172678 908 True 1299 1299 92.375 1553 2470 1 chr7B.!!$R1 917
11 TraesCS4D01G129600 chr7B 686929072 686929935 863 False 1267 1267 92.986 1602 2481 1 chr7B.!!$F1 879
12 TraesCS4D01G129600 chr5B 614980849 614981710 861 True 1260 1260 92.865 1602 2481 1 chr5B.!!$R1 879
13 TraesCS4D01G129600 chr3D 554391669 554392564 895 False 1214 1214 90.870 1553 2481 1 chr3D.!!$F1 928
14 TraesCS4D01G129600 chr3D 399666037 399666574 537 True 857 857 95.370 1 540 1 chr3D.!!$R1 539
15 TraesCS4D01G129600 chr2A 711070376 711071067 691 False 1014 1014 92.948 1602 2307 1 chr2A.!!$F1 705
16 TraesCS4D01G129600 chr2D 627335016 627335541 525 True 856 856 95.872 1 533 1 chr2D.!!$R3 532
17 TraesCS4D01G129600 chr2D 166110981 166111513 532 True 808 808 93.996 1 533 1 chr2D.!!$R2 532
18 TraesCS4D01G129600 chr2D 77557090 77557622 532 True 747 747 91.948 1 533 1 chr2D.!!$R1 532
19 TraesCS4D01G129600 chr7D 452968127 452968629 502 False 784 784 94.831 1 502 1 chr7D.!!$F1 501
20 TraesCS4D01G129600 chr5D 384425630 384426161 531 True 784 784 93.233 1 532 1 chr5D.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 694 0.389817 CACGGACAGAAATGGCTCGA 60.39 55.0 0.0 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 2438 0.034089 AAGCAGACACTATTGCCCCC 60.034 55.0 0.0 0.0 41.17 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.905637 AGCCAAAACTAGGGTTTCCG 58.094 50.000 0.00 0.00 43.90 4.30
256 270 1.999002 GGTGGGGCCAGCCTAAGTA 60.999 63.158 4.39 0.00 38.38 2.24
296 310 0.460284 CTAAGAGACGGGCGTTGCAT 60.460 55.000 0.00 0.00 0.00 3.96
364 379 2.671070 CCGCAACTGGACCAGGAT 59.329 61.111 25.34 11.15 35.51 3.24
503 520 6.736794 GCAGGTCAGTTTGTGATTTGATTTCT 60.737 38.462 0.00 0.00 37.56 2.52
509 526 5.182001 AGTTTGTGATTTGATTTCTCCCTCG 59.818 40.000 0.00 0.00 0.00 4.63
564 581 5.279758 GGGCAGTCTACTTCTTTTCTTCTCT 60.280 44.000 0.00 0.00 0.00 3.10
582 602 3.185797 TCTCTTTTTCTTTTACCGCGAGC 59.814 43.478 8.23 0.00 0.00 5.03
583 603 2.224784 TCTTTTTCTTTTACCGCGAGCC 59.775 45.455 8.23 0.00 0.00 4.70
584 604 0.513820 TTTTCTTTTACCGCGAGCCG 59.486 50.000 8.23 0.00 0.00 5.52
629 653 7.858382 TGTCATAAACATTTGGTTACGACAAAG 59.142 33.333 13.17 0.00 40.70 2.77
667 694 0.389817 CACGGACAGAAATGGCTCGA 60.390 55.000 0.00 0.00 0.00 4.04
668 695 0.537188 ACGGACAGAAATGGCTCGAT 59.463 50.000 0.00 0.00 0.00 3.59
690 717 1.103398 GGTCATGGATTGCCCTTCCG 61.103 60.000 0.00 0.00 35.94 4.30
721 749 4.025040 TCAGATGACTTGGCACTTCATT 57.975 40.909 10.53 0.91 29.93 2.57
723 751 4.828939 TCAGATGACTTGGCACTTCATTTT 59.171 37.500 10.53 2.05 29.93 1.82
725 753 3.096489 TGACTTGGCACTTCATTTTGC 57.904 42.857 0.00 0.00 38.06 3.68
843 871 0.737715 AAGTCGAATGCGCCTCTCAC 60.738 55.000 4.18 1.39 37.46 3.51
883 911 3.060615 GCAGTTGCCAGCTGGGAG 61.061 66.667 33.46 20.22 40.01 4.30
884 912 2.433446 CAGTTGCCAGCTGGGAGT 59.567 61.111 33.46 19.28 40.01 3.85
885 913 1.970114 CAGTTGCCAGCTGGGAGTG 60.970 63.158 33.46 25.83 40.01 3.51
886 914 2.674380 GTTGCCAGCTGGGAGTGG 60.674 66.667 33.46 9.13 40.01 4.00
887 915 3.970410 TTGCCAGCTGGGAGTGGG 61.970 66.667 33.46 7.31 40.01 4.61
888 916 4.980592 TGCCAGCTGGGAGTGGGA 62.981 66.667 33.46 6.16 40.01 4.37
955 983 2.522198 AAAACCACTGGCCACCACCA 62.522 55.000 0.00 0.00 38.29 4.17
962 990 4.035102 GGCCACCACCACCTCCTC 62.035 72.222 0.00 0.00 0.00 3.71
1624 1673 4.814294 GCGTAGGGTGCTCCGGTG 62.814 72.222 0.00 0.00 41.52 4.94
1625 1674 4.143333 CGTAGGGTGCTCCGGTGG 62.143 72.222 0.00 0.00 41.52 4.61
1626 1675 4.468689 GTAGGGTGCTCCGGTGGC 62.469 72.222 13.57 13.57 41.52 5.01
1929 1978 2.357034 TTCAAGTCCCGCGCTGAC 60.357 61.111 16.46 16.46 0.00 3.51
1984 2045 9.060347 CATACATGTAGCTACTCCATTCAAATT 57.940 33.333 23.84 1.67 0.00 1.82
1999 2060 2.997986 TCAAATTAGAAGACGGCGAACC 59.002 45.455 16.62 1.74 0.00 3.62
2001 2062 3.329929 AATTAGAAGACGGCGAACCTT 57.670 42.857 16.62 13.64 0.00 3.50
2037 2098 1.876156 CTGCCTGTTTCACTGAAGTCC 59.124 52.381 0.00 0.00 0.00 3.85
2056 2117 6.051179 AGTCCAAGGGATCAGTAAGTTTAC 57.949 41.667 0.00 0.00 32.73 2.01
2057 2118 5.546499 AGTCCAAGGGATCAGTAAGTTTACA 59.454 40.000 4.97 0.00 33.23 2.41
2058 2119 6.043938 AGTCCAAGGGATCAGTAAGTTTACAA 59.956 38.462 4.97 0.00 33.23 2.41
2059 2120 6.371825 GTCCAAGGGATCAGTAAGTTTACAAG 59.628 42.308 4.97 0.00 33.23 3.16
2119 2195 6.015434 ACATTGATGTGAGTGTGTAGTGTAGA 60.015 38.462 0.00 0.00 40.03 2.59
2151 2227 7.402054 TCATCTCCCTTGCTAGTTGATTTTAA 58.598 34.615 0.00 0.00 0.00 1.52
2321 2419 5.573219 TGGATCCTTCTGTGTTGAATGATT 58.427 37.500 14.23 0.00 33.58 2.57
2338 2438 7.679783 TGAATGATTAGGTGGTGTAGATATGG 58.320 38.462 0.00 0.00 0.00 2.74
2433 2533 5.989777 AGTGGTACAGTTACAAGTGATTGTC 59.010 40.000 3.84 0.00 40.27 3.18
2456 2556 6.950428 GTCGCAGCATAAATAATCTATCAACG 59.050 38.462 0.00 0.00 0.00 4.10
2471 2571 3.469008 TCAACGGGTAATAGCAGATGG 57.531 47.619 0.00 0.00 0.00 3.51
2472 2572 1.873591 CAACGGGTAATAGCAGATGGC 59.126 52.381 0.00 0.00 45.30 4.40
2482 2582 9.350384 GGGTAATAGCAGATGGCAATTTTACCC 62.350 44.444 17.91 17.91 46.06 3.69
2484 2584 3.825143 GCAGATGGCAATTTTACCCAT 57.175 42.857 0.00 0.00 43.97 4.00
2485 2585 3.460103 GCAGATGGCAATTTTACCCATG 58.540 45.455 0.00 0.00 43.97 3.66
2486 2586 3.742013 GCAGATGGCAATTTTACCCATGG 60.742 47.826 4.14 4.14 43.97 3.66
2487 2587 3.040477 AGATGGCAATTTTACCCATGGG 58.960 45.455 30.23 30.23 39.36 4.00
2518 2618 4.097828 GGGTACCGTACACGCATG 57.902 61.111 5.65 0.00 40.86 4.06
2519 2619 1.519898 GGGTACCGTACACGCATGG 60.520 63.158 5.65 0.00 40.86 3.66
2520 2620 1.519898 GGTACCGTACACGCATGGG 60.520 63.158 8.44 8.44 38.18 4.00
2521 2621 2.169146 GTACCGTACACGCATGGGC 61.169 63.158 10.10 0.00 38.18 5.36
2522 2622 2.647158 TACCGTACACGCATGGGCA 61.647 57.895 10.10 0.00 41.24 5.36
2523 2623 2.566057 TACCGTACACGCATGGGCAG 62.566 60.000 10.10 5.48 41.24 4.85
2524 2624 3.195002 CGTACACGCATGGGCAGG 61.195 66.667 10.10 2.45 41.24 4.85
2525 2625 2.824041 GTACACGCATGGGCAGGG 60.824 66.667 10.10 0.00 41.24 4.45
2526 2626 3.326578 TACACGCATGGGCAGGGT 61.327 61.111 10.10 6.00 41.24 4.34
2527 2627 1.990614 TACACGCATGGGCAGGGTA 60.991 57.895 10.10 5.05 41.24 3.69
2528 2628 1.341913 TACACGCATGGGCAGGGTAT 61.342 55.000 10.10 0.00 41.24 2.73
2529 2629 2.188829 CACGCATGGGCAGGGTATG 61.189 63.158 10.10 0.00 41.24 2.39
2530 2630 2.595463 CGCATGGGCAGGGTATGG 60.595 66.667 0.00 0.00 41.24 2.74
2531 2631 2.203538 GCATGGGCAGGGTATGGG 60.204 66.667 0.00 0.00 40.72 4.00
2532 2632 2.203538 CATGGGCAGGGTATGGGC 60.204 66.667 0.00 0.00 0.00 5.36
2533 2633 2.699554 ATGGGCAGGGTATGGGCA 60.700 61.111 0.00 0.00 0.00 5.36
2534 2634 3.073599 ATGGGCAGGGTATGGGCAC 62.074 63.158 0.00 0.00 0.00 5.01
2535 2635 3.738481 GGGCAGGGTATGGGCACA 61.738 66.667 0.00 0.00 0.00 4.57
2536 2636 2.440247 GGCAGGGTATGGGCACAC 60.440 66.667 0.00 0.00 0.00 3.82
2537 2637 2.677228 GCAGGGTATGGGCACACT 59.323 61.111 0.00 0.00 30.16 3.55
2538 2638 1.000896 GCAGGGTATGGGCACACTT 60.001 57.895 0.00 0.00 26.36 3.16
2539 2639 0.611896 GCAGGGTATGGGCACACTTT 60.612 55.000 0.00 0.00 26.36 2.66
2540 2640 1.923356 CAGGGTATGGGCACACTTTT 58.077 50.000 0.00 0.00 26.36 2.27
2541 2641 2.882229 GCAGGGTATGGGCACACTTTTA 60.882 50.000 0.00 0.00 26.36 1.52
2542 2642 3.631250 CAGGGTATGGGCACACTTTTAT 58.369 45.455 0.00 0.00 26.36 1.40
2543 2643 4.787551 CAGGGTATGGGCACACTTTTATA 58.212 43.478 0.00 0.00 26.36 0.98
2544 2644 4.578928 CAGGGTATGGGCACACTTTTATAC 59.421 45.833 0.00 0.00 26.36 1.47
2545 2645 3.887110 GGGTATGGGCACACTTTTATACC 59.113 47.826 5.73 5.73 39.36 2.73
2546 2646 3.887110 GGTATGGGCACACTTTTATACCC 59.113 47.826 0.00 0.00 35.93 3.69
2548 2648 3.748645 TGGGCACACTTTTATACCCAT 57.251 42.857 0.00 0.00 42.38 4.00
2549 2649 3.360867 TGGGCACACTTTTATACCCATG 58.639 45.455 0.00 0.00 42.38 3.66
2550 2650 2.693074 GGGCACACTTTTATACCCATGG 59.307 50.000 4.14 4.14 37.30 3.66
2551 2651 2.693074 GGCACACTTTTATACCCATGGG 59.307 50.000 30.23 30.23 42.03 4.00
2570 2670 2.894731 GGTAGTACCCATACCCTACCC 58.105 57.143 8.27 0.00 37.33 3.69
2571 2671 2.519013 GTAGTACCCATACCCTACCCG 58.481 57.143 0.00 0.00 30.88 5.28
2572 2672 0.936691 AGTACCCATACCCTACCCGT 59.063 55.000 0.00 0.00 30.88 5.28
2573 2673 1.291939 AGTACCCATACCCTACCCGTT 59.708 52.381 0.00 0.00 30.88 4.44
2574 2674 2.517980 AGTACCCATACCCTACCCGTTA 59.482 50.000 0.00 0.00 30.88 3.18
2575 2675 2.566708 ACCCATACCCTACCCGTTAA 57.433 50.000 0.00 0.00 0.00 2.01
2576 2676 2.401568 ACCCATACCCTACCCGTTAAG 58.598 52.381 0.00 0.00 0.00 1.85
2577 2677 2.293118 ACCCATACCCTACCCGTTAAGT 60.293 50.000 0.00 0.00 0.00 2.24
2578 2678 2.773661 CCCATACCCTACCCGTTAAGTT 59.226 50.000 0.00 0.00 0.00 2.66
2579 2679 3.966665 CCCATACCCTACCCGTTAAGTTA 59.033 47.826 0.00 0.00 0.00 2.24
2580 2680 4.594491 CCCATACCCTACCCGTTAAGTTAT 59.406 45.833 0.00 0.00 0.00 1.89
2581 2681 5.511888 CCCATACCCTACCCGTTAAGTTATG 60.512 48.000 0.00 0.00 0.00 1.90
2582 2682 5.511888 CCATACCCTACCCGTTAAGTTATGG 60.512 48.000 0.00 0.00 0.00 2.74
2588 2688 3.480505 CCCGTTAAGTTATGGGTAGGG 57.519 52.381 11.08 2.80 39.20 3.53
2589 2689 2.773661 CCCGTTAAGTTATGGGTAGGGT 59.226 50.000 11.08 0.00 39.20 4.34
2590 2690 3.966665 CCCGTTAAGTTATGGGTAGGGTA 59.033 47.826 11.08 0.00 39.20 3.69
2591 2691 4.202253 CCCGTTAAGTTATGGGTAGGGTAC 60.202 50.000 11.08 0.00 39.20 3.34
2592 2692 4.499696 CCGTTAAGTTATGGGTAGGGTACG 60.500 50.000 0.00 0.00 0.00 3.67
2593 2693 4.499696 CGTTAAGTTATGGGTAGGGTACGG 60.500 50.000 0.00 0.00 0.00 4.02
2594 2694 2.092598 AGTTATGGGTAGGGTACGGG 57.907 55.000 0.00 0.00 0.00 5.28
2595 2695 1.291939 AGTTATGGGTAGGGTACGGGT 59.708 52.381 0.00 0.00 0.00 5.28
2596 2696 2.517980 AGTTATGGGTAGGGTACGGGTA 59.482 50.000 0.00 0.00 0.00 3.69
2597 2697 3.142787 AGTTATGGGTAGGGTACGGGTAT 59.857 47.826 0.00 0.00 0.00 2.73
2598 2698 4.356794 AGTTATGGGTAGGGTACGGGTATA 59.643 45.833 0.00 0.00 0.00 1.47
2599 2699 2.978156 TGGGTAGGGTACGGGTATAG 57.022 55.000 0.00 0.00 0.00 1.31
2600 2700 1.203050 TGGGTAGGGTACGGGTATAGC 60.203 57.143 0.00 0.00 0.00 2.97
2601 2701 1.550327 GGTAGGGTACGGGTATAGCC 58.450 60.000 11.13 11.13 42.12 3.93
2605 2705 1.417288 GGGTACGGGTATAGCCTTGT 58.583 55.000 18.51 12.19 39.27 3.16
2606 2706 2.597455 GGGTACGGGTATAGCCTTGTA 58.403 52.381 18.51 11.25 39.27 2.41
2607 2707 2.297315 GGGTACGGGTATAGCCTTGTAC 59.703 54.545 21.60 21.60 42.68 2.90
2608 2708 3.650070 GTACGGGTATAGCCTTGTACC 57.350 52.381 20.15 8.97 40.19 3.34
2612 2712 2.521105 GGTATAGCCTTGTACCCACG 57.479 55.000 0.00 0.00 35.60 4.94
2613 2713 1.069668 GGTATAGCCTTGTACCCACGG 59.930 57.143 0.00 0.00 35.60 4.94
2614 2714 1.069668 GTATAGCCTTGTACCCACGGG 59.930 57.143 0.00 0.00 42.03 5.28
2634 2734 2.613129 GTATACCCATACCCTTCCCGT 58.387 52.381 0.00 0.00 32.33 5.28
2635 2735 2.201523 ATACCCATACCCTTCCCGTT 57.798 50.000 0.00 0.00 0.00 4.44
2636 2736 1.969713 TACCCATACCCTTCCCGTTT 58.030 50.000 0.00 0.00 0.00 3.60
2637 2737 0.330267 ACCCATACCCTTCCCGTTTG 59.670 55.000 0.00 0.00 0.00 2.93
2638 2738 0.330267 CCCATACCCTTCCCGTTTGT 59.670 55.000 0.00 0.00 0.00 2.83
2639 2739 1.459450 CCATACCCTTCCCGTTTGTG 58.541 55.000 0.00 0.00 0.00 3.33
2640 2740 1.003812 CCATACCCTTCCCGTTTGTGA 59.996 52.381 0.00 0.00 0.00 3.58
2641 2741 2.553466 CCATACCCTTCCCGTTTGTGAA 60.553 50.000 0.00 0.00 0.00 3.18
2642 2742 2.259266 TACCCTTCCCGTTTGTGAAC 57.741 50.000 0.00 0.00 0.00 3.18
2643 2743 0.549469 ACCCTTCCCGTTTGTGAACT 59.451 50.000 0.00 0.00 33.51 3.01
2644 2744 1.770061 ACCCTTCCCGTTTGTGAACTA 59.230 47.619 0.00 0.00 33.51 2.24
2645 2745 2.173143 ACCCTTCCCGTTTGTGAACTAA 59.827 45.455 0.00 0.00 33.51 2.24
2646 2746 3.181437 ACCCTTCCCGTTTGTGAACTAAT 60.181 43.478 0.00 0.00 33.51 1.73
2647 2747 3.190535 CCCTTCCCGTTTGTGAACTAATG 59.809 47.826 0.00 0.00 33.51 1.90
2648 2748 3.818773 CCTTCCCGTTTGTGAACTAATGT 59.181 43.478 0.00 0.00 33.51 2.71
2649 2749 4.277423 CCTTCCCGTTTGTGAACTAATGTT 59.723 41.667 0.00 0.00 39.42 2.71
2650 2750 5.470777 CCTTCCCGTTTGTGAACTAATGTTA 59.529 40.000 0.00 0.00 36.39 2.41
2651 2751 6.016943 CCTTCCCGTTTGTGAACTAATGTTAA 60.017 38.462 0.00 0.00 36.39 2.01
2652 2752 7.308951 CCTTCCCGTTTGTGAACTAATGTTAAT 60.309 37.037 0.00 0.00 36.39 1.40
2653 2753 7.513371 TCCCGTTTGTGAACTAATGTTAATT 57.487 32.000 0.00 0.00 36.39 1.40
2654 2754 7.942990 TCCCGTTTGTGAACTAATGTTAATTT 58.057 30.769 0.00 0.00 36.39 1.82
2655 2755 7.863375 TCCCGTTTGTGAACTAATGTTAATTTG 59.137 33.333 0.00 0.00 36.39 2.32
2656 2756 7.650104 CCCGTTTGTGAACTAATGTTAATTTGT 59.350 33.333 0.00 0.00 36.39 2.83
2657 2757 8.687301 CCGTTTGTGAACTAATGTTAATTTGTC 58.313 33.333 0.00 0.00 36.39 3.18
2658 2758 8.406716 CGTTTGTGAACTAATGTTAATTTGTCG 58.593 33.333 0.00 0.00 36.39 4.35
2659 2759 9.228636 GTTTGTGAACTAATGTTAATTTGTCGT 57.771 29.630 0.00 0.00 36.39 4.34
2660 2760 8.996988 TTGTGAACTAATGTTAATTTGTCGTC 57.003 30.769 0.00 0.00 36.39 4.20
2661 2761 8.144155 TGTGAACTAATGTTAATTTGTCGTCA 57.856 30.769 0.00 0.00 36.39 4.35
2662 2762 8.613482 TGTGAACTAATGTTAATTTGTCGTCAA 58.387 29.630 0.00 0.00 36.39 3.18
2663 2763 9.607285 GTGAACTAATGTTAATTTGTCGTCAAT 57.393 29.630 0.00 0.00 36.39 2.57
2677 2777 9.825972 ATTTGTCGTCAATTAGTCATTAACTTG 57.174 29.630 0.00 0.00 35.04 3.16
2678 2778 7.956420 TGTCGTCAATTAGTCATTAACTTGT 57.044 32.000 0.00 0.00 39.55 3.16
2679 2779 8.014322 TGTCGTCAATTAGTCATTAACTTGTC 57.986 34.615 0.00 0.00 39.55 3.18
2680 2780 7.654116 TGTCGTCAATTAGTCATTAACTTGTCA 59.346 33.333 0.00 0.00 39.55 3.58
2681 2781 8.656849 GTCGTCAATTAGTCATTAACTTGTCAT 58.343 33.333 0.00 0.00 39.55 3.06
2682 2782 8.655970 TCGTCAATTAGTCATTAACTTGTCATG 58.344 33.333 0.00 0.00 39.55 3.07
2683 2783 8.443160 CGTCAATTAGTCATTAACTTGTCATGT 58.557 33.333 0.00 0.00 39.55 3.21
2684 2784 9.546909 GTCAATTAGTCATTAACTTGTCATGTG 57.453 33.333 0.00 0.00 39.55 3.21
2685 2785 9.500785 TCAATTAGTCATTAACTTGTCATGTGA 57.499 29.630 0.00 0.00 39.55 3.58
2686 2786 9.546909 CAATTAGTCATTAACTTGTCATGTGAC 57.453 33.333 6.21 6.21 41.15 3.67
2687 2787 9.507329 AATTAGTCATTAACTTGTCATGTGACT 57.493 29.630 13.71 12.62 44.72 3.41
2688 2788 8.534333 TTAGTCATTAACTTGTCATGTGACTC 57.466 34.615 13.71 0.00 42.51 3.36
2689 2789 5.635280 AGTCATTAACTTGTCATGTGACTCG 59.365 40.000 13.71 7.48 44.99 4.18
2690 2790 5.405571 GTCATTAACTTGTCATGTGACTCGT 59.594 40.000 13.71 8.03 44.99 4.18
2691 2791 5.633601 TCATTAACTTGTCATGTGACTCGTC 59.366 40.000 13.71 0.00 44.99 4.20
2692 2792 3.735237 AACTTGTCATGTGACTCGTCT 57.265 42.857 13.71 1.54 44.99 4.18
2693 2793 4.848562 AACTTGTCATGTGACTCGTCTA 57.151 40.909 13.71 0.00 44.99 2.59
2694 2794 4.162096 ACTTGTCATGTGACTCGTCTAC 57.838 45.455 13.71 0.00 44.99 2.59
2695 2795 3.821600 ACTTGTCATGTGACTCGTCTACT 59.178 43.478 13.71 0.00 44.99 2.57
2696 2796 4.083217 ACTTGTCATGTGACTCGTCTACTC 60.083 45.833 13.71 0.00 44.99 2.59
2697 2797 2.747989 TGTCATGTGACTCGTCTACTCC 59.252 50.000 13.71 0.00 44.99 3.85
2698 2798 3.011119 GTCATGTGACTCGTCTACTCCT 58.989 50.000 5.91 0.00 41.65 3.69
2699 2799 4.190001 GTCATGTGACTCGTCTACTCCTA 58.810 47.826 5.91 0.00 41.65 2.94
2700 2800 4.817464 GTCATGTGACTCGTCTACTCCTAT 59.183 45.833 5.91 0.00 41.65 2.57
2701 2801 5.297278 GTCATGTGACTCGTCTACTCCTATT 59.703 44.000 5.91 0.00 41.65 1.73
2702 2802 5.297029 TCATGTGACTCGTCTACTCCTATTG 59.703 44.000 0.00 0.00 0.00 1.90
2703 2803 4.840271 TGTGACTCGTCTACTCCTATTGA 58.160 43.478 0.00 0.00 0.00 2.57
2704 2804 4.634883 TGTGACTCGTCTACTCCTATTGAC 59.365 45.833 0.00 0.00 0.00 3.18
2705 2805 4.634883 GTGACTCGTCTACTCCTATTGACA 59.365 45.833 0.00 0.00 0.00 3.58
2706 2806 5.297278 GTGACTCGTCTACTCCTATTGACAT 59.703 44.000 0.00 0.00 0.00 3.06
2707 2807 6.482641 GTGACTCGTCTACTCCTATTGACATA 59.517 42.308 0.00 0.00 0.00 2.29
2708 2808 7.012138 GTGACTCGTCTACTCCTATTGACATAA 59.988 40.741 0.00 0.00 0.00 1.90
2709 2809 7.720074 TGACTCGTCTACTCCTATTGACATAAT 59.280 37.037 0.00 0.00 0.00 1.28
2710 2810 9.217278 GACTCGTCTACTCCTATTGACATAATA 57.783 37.037 0.00 0.00 0.00 0.98
2711 2811 9.221933 ACTCGTCTACTCCTATTGACATAATAG 57.778 37.037 0.00 0.00 0.00 1.73
2712 2812 9.221933 CTCGTCTACTCCTATTGACATAATAGT 57.778 37.037 0.00 0.00 0.00 2.12
2743 2843 9.921637 TGTGGTTTCTAAATTTTGATATTGGTC 57.078 29.630 3.15 0.00 0.00 4.02
2744 2844 9.921637 GTGGTTTCTAAATTTTGATATTGGTCA 57.078 29.630 3.15 0.00 0.00 4.02
2755 2855 8.786826 TTTTGATATTGGTCATTTACTCGTCT 57.213 30.769 0.00 0.00 0.00 4.18
2756 2856 9.878667 TTTTGATATTGGTCATTTACTCGTCTA 57.121 29.630 0.00 0.00 0.00 2.59
2757 2857 8.867112 TTGATATTGGTCATTTACTCGTCTAC 57.133 34.615 0.00 0.00 0.00 2.59
2758 2858 7.431249 TGATATTGGTCATTTACTCGTCTACC 58.569 38.462 0.00 0.00 0.00 3.18
2759 2859 5.934402 ATTGGTCATTTACTCGTCTACCT 57.066 39.130 0.00 0.00 0.00 3.08
2760 2860 4.713824 TGGTCATTTACTCGTCTACCTG 57.286 45.455 0.00 0.00 0.00 4.00
2761 2861 4.084287 TGGTCATTTACTCGTCTACCTGT 58.916 43.478 0.00 0.00 0.00 4.00
2762 2862 4.525487 TGGTCATTTACTCGTCTACCTGTT 59.475 41.667 0.00 0.00 0.00 3.16
2763 2863 5.711506 TGGTCATTTACTCGTCTACCTGTTA 59.288 40.000 0.00 0.00 0.00 2.41
2764 2864 6.032717 GGTCATTTACTCGTCTACCTGTTAC 58.967 44.000 0.00 0.00 0.00 2.50
2765 2865 6.127786 GGTCATTTACTCGTCTACCTGTTACT 60.128 42.308 0.00 0.00 0.00 2.24
2766 2866 6.746364 GTCATTTACTCGTCTACCTGTTACTG 59.254 42.308 0.00 0.00 0.00 2.74
2767 2867 6.656270 TCATTTACTCGTCTACCTGTTACTGA 59.344 38.462 0.00 0.00 0.00 3.41
2768 2868 6.492007 TTTACTCGTCTACCTGTTACTGAG 57.508 41.667 0.00 0.00 0.00 3.35
2769 2869 2.748532 ACTCGTCTACCTGTTACTGAGC 59.251 50.000 0.00 0.00 0.00 4.26
2770 2870 3.011119 CTCGTCTACCTGTTACTGAGCT 58.989 50.000 0.00 0.00 0.00 4.09
2771 2871 2.747989 TCGTCTACCTGTTACTGAGCTG 59.252 50.000 0.00 0.00 0.00 4.24
2772 2872 2.747989 CGTCTACCTGTTACTGAGCTGA 59.252 50.000 0.00 0.00 0.00 4.26
2773 2873 3.181505 CGTCTACCTGTTACTGAGCTGAG 60.182 52.174 0.00 0.00 0.00 3.35
2774 2874 4.011023 GTCTACCTGTTACTGAGCTGAGA 58.989 47.826 7.36 0.00 0.00 3.27
2775 2875 4.642885 GTCTACCTGTTACTGAGCTGAGAT 59.357 45.833 7.36 0.00 0.00 2.75
2776 2876 5.823570 GTCTACCTGTTACTGAGCTGAGATA 59.176 44.000 7.36 0.00 0.00 1.98
2777 2877 6.319152 GTCTACCTGTTACTGAGCTGAGATAA 59.681 42.308 7.36 0.00 0.00 1.75
2778 2878 7.013846 GTCTACCTGTTACTGAGCTGAGATAAT 59.986 40.741 7.36 0.00 0.00 1.28
2779 2879 6.552445 ACCTGTTACTGAGCTGAGATAATT 57.448 37.500 7.36 0.00 0.00 1.40
2780 2880 6.344500 ACCTGTTACTGAGCTGAGATAATTG 58.656 40.000 7.36 0.00 0.00 2.32
2781 2881 6.155221 ACCTGTTACTGAGCTGAGATAATTGA 59.845 38.462 7.36 0.00 0.00 2.57
2782 2882 7.147585 ACCTGTTACTGAGCTGAGATAATTGAT 60.148 37.037 7.36 0.00 0.00 2.57
2783 2883 7.714377 CCTGTTACTGAGCTGAGATAATTGATT 59.286 37.037 7.36 0.00 0.00 2.57
2784 2884 9.107177 CTGTTACTGAGCTGAGATAATTGATTT 57.893 33.333 7.36 0.00 0.00 2.17
2785 2885 9.453572 TGTTACTGAGCTGAGATAATTGATTTT 57.546 29.630 7.36 0.00 0.00 1.82
2809 2909 8.464770 TTTTGTCAAATGTGCTATTAATGAGC 57.535 30.769 0.00 4.36 40.53 4.26
2827 2927 9.979578 TTAATGAGCATAAAATTGTGAACAACT 57.020 25.926 0.00 0.00 38.86 3.16
2828 2928 8.891671 AATGAGCATAAAATTGTGAACAACTT 57.108 26.923 0.00 0.00 38.86 2.66
2829 2929 9.979578 AATGAGCATAAAATTGTGAACAACTTA 57.020 25.926 0.00 0.78 38.86 2.24
2831 2931 9.409312 TGAGCATAAAATTGTGAACAACTTATG 57.591 29.630 21.74 21.74 41.72 1.90
2832 2932 9.410556 GAGCATAAAATTGTGAACAACTTATGT 57.589 29.630 24.00 17.21 46.82 2.29
2848 2948 9.662947 ACAACTTATGTACTATTTGTTCTACCC 57.337 33.333 0.00 0.00 41.63 3.69
2849 2949 8.814235 CAACTTATGTACTATTTGTTCTACCCG 58.186 37.037 0.00 0.00 0.00 5.28
2850 2950 8.071177 ACTTATGTACTATTTGTTCTACCCGT 57.929 34.615 0.00 0.00 0.00 5.28
2851 2951 8.534496 ACTTATGTACTATTTGTTCTACCCGTT 58.466 33.333 0.00 0.00 0.00 4.44
2852 2952 8.706492 TTATGTACTATTTGTTCTACCCGTTG 57.294 34.615 0.00 0.00 0.00 4.10
2853 2953 5.481105 TGTACTATTTGTTCTACCCGTTGG 58.519 41.667 0.00 0.00 37.80 3.77
2893 2993 1.669440 CCGTCGGGTATGGGTATGG 59.331 63.158 2.34 0.00 0.00 2.74
2894 2994 1.669440 CGTCGGGTATGGGTATGGG 59.331 63.158 0.00 0.00 0.00 4.00
2895 2995 1.117142 CGTCGGGTATGGGTATGGGT 61.117 60.000 0.00 0.00 0.00 4.51
2896 2996 1.822854 CGTCGGGTATGGGTATGGGTA 60.823 57.143 0.00 0.00 0.00 3.69
2897 2997 2.328319 GTCGGGTATGGGTATGGGTAA 58.672 52.381 0.00 0.00 0.00 2.85
2898 2998 2.705127 GTCGGGTATGGGTATGGGTAAA 59.295 50.000 0.00 0.00 0.00 2.01
2899 2999 2.974099 TCGGGTATGGGTATGGGTAAAG 59.026 50.000 0.00 0.00 0.00 1.85
2900 3000 2.707257 CGGGTATGGGTATGGGTAAAGT 59.293 50.000 0.00 0.00 0.00 2.66
2901 3001 3.136992 CGGGTATGGGTATGGGTAAAGTT 59.863 47.826 0.00 0.00 0.00 2.66
2902 3002 4.385532 CGGGTATGGGTATGGGTAAAGTTT 60.386 45.833 0.00 0.00 0.00 2.66
2903 3003 5.135383 GGGTATGGGTATGGGTAAAGTTTC 58.865 45.833 0.00 0.00 0.00 2.78
2904 3004 5.340194 GGGTATGGGTATGGGTAAAGTTTCA 60.340 44.000 0.00 0.00 0.00 2.69
2905 3005 6.370453 GGTATGGGTATGGGTAAAGTTTCAT 58.630 40.000 0.00 0.00 0.00 2.57
2906 3006 7.421617 GGGTATGGGTATGGGTAAAGTTTCATA 60.422 40.741 0.00 0.00 0.00 2.15
2907 3007 8.000127 GGTATGGGTATGGGTAAAGTTTCATAA 59.000 37.037 0.00 0.00 0.00 1.90
2908 3008 7.891498 ATGGGTATGGGTAAAGTTTCATAAC 57.109 36.000 0.00 0.00 34.36 1.89
2909 3009 6.189133 TGGGTATGGGTAAAGTTTCATAACC 58.811 40.000 17.26 17.26 45.40 2.85
2910 3010 6.189133 GGGTATGGGTAAAGTTTCATAACCA 58.811 40.000 18.44 9.69 44.86 3.67
2912 3012 7.201875 GGGTATGGGTAAAGTTTCATAACCATG 60.202 40.741 18.44 0.00 46.53 3.66
2913 3013 6.790232 ATGGGTAAAGTTTCATAACCATGG 57.210 37.500 11.19 11.19 45.63 3.66
2914 3014 5.020132 TGGGTAAAGTTTCATAACCATGGG 58.980 41.667 18.09 0.00 33.98 4.00
2915 3015 5.020795 GGGTAAAGTTTCATAACCATGGGT 58.979 41.667 18.09 13.37 37.65 4.51
2916 3016 6.189133 GGGTAAAGTTTCATAACCATGGGTA 58.811 40.000 13.07 13.07 33.12 3.69
2917 3017 6.095860 GGGTAAAGTTTCATAACCATGGGTAC 59.904 42.308 12.94 0.68 33.12 3.34
2918 3018 5.890424 AAAGTTTCATAACCATGGGTACG 57.110 39.130 12.94 3.39 33.12 3.67
2919 3019 3.881220 AGTTTCATAACCATGGGTACGG 58.119 45.455 12.94 7.86 33.12 4.02
2920 3020 2.946990 GTTTCATAACCATGGGTACGGG 59.053 50.000 12.94 5.10 33.12 5.28
2921 3021 1.882308 TCATAACCATGGGTACGGGT 58.118 50.000 12.94 0.00 33.12 5.28
2922 3022 3.043465 TCATAACCATGGGTACGGGTA 57.957 47.619 12.94 0.00 33.12 3.69
2923 3023 3.589641 TCATAACCATGGGTACGGGTAT 58.410 45.455 12.94 0.00 35.47 2.73
2924 3024 3.670625 CATAACCATGGGTACGGGTATG 58.329 50.000 12.94 2.16 44.36 2.39
2925 3025 0.841289 AACCATGGGTACGGGTATGG 59.159 55.000 18.09 12.14 44.38 2.74
2926 3026 1.057851 ACCATGGGTACGGGTATGGG 61.058 60.000 18.09 2.88 43.38 4.00
2927 3027 1.057851 CCATGGGTACGGGTATGGGT 61.058 60.000 2.85 0.00 37.11 4.51
2928 3028 1.719529 CATGGGTACGGGTATGGGTA 58.280 55.000 0.00 0.00 0.00 3.69
2929 3029 1.621814 CATGGGTACGGGTATGGGTAG 59.378 57.143 0.00 0.00 0.00 3.18
2930 3030 0.932955 TGGGTACGGGTATGGGTAGA 59.067 55.000 0.00 0.00 0.00 2.59
2931 3031 1.290431 TGGGTACGGGTATGGGTAGAA 59.710 52.381 0.00 0.00 0.00 2.10
2932 3032 2.090606 TGGGTACGGGTATGGGTAGAAT 60.091 50.000 0.00 0.00 0.00 2.40
2933 3033 2.974794 GGGTACGGGTATGGGTAGAATT 59.025 50.000 0.00 0.00 0.00 2.17
2934 3034 3.007290 GGGTACGGGTATGGGTAGAATTC 59.993 52.174 0.00 0.00 0.00 2.17
2935 3035 3.899980 GGTACGGGTATGGGTAGAATTCT 59.100 47.826 13.56 13.56 0.00 2.40
2936 3036 4.262335 GGTACGGGTATGGGTAGAATTCTG 60.262 50.000 18.47 0.00 0.00 3.02
2937 3037 3.381335 ACGGGTATGGGTAGAATTCTGT 58.619 45.455 18.47 0.13 0.00 3.41
2938 3038 4.549668 ACGGGTATGGGTAGAATTCTGTA 58.450 43.478 18.47 0.00 0.00 2.74
2939 3039 4.343239 ACGGGTATGGGTAGAATTCTGTAC 59.657 45.833 18.47 8.94 0.00 2.90
2940 3040 4.262335 CGGGTATGGGTAGAATTCTGTACC 60.262 50.000 18.47 17.23 40.13 3.34
2947 3047 4.756502 GGTAGAATTCTGTACCCACTGAC 58.243 47.826 18.47 3.83 35.78 3.51
2948 3048 4.466726 GGTAGAATTCTGTACCCACTGACT 59.533 45.833 18.47 0.00 35.78 3.41
2949 3049 5.655532 GGTAGAATTCTGTACCCACTGACTA 59.344 44.000 18.47 0.00 35.78 2.59
2950 3050 6.324254 GGTAGAATTCTGTACCCACTGACTAT 59.676 42.308 18.47 0.00 35.78 2.12
2951 3051 7.504911 GGTAGAATTCTGTACCCACTGACTATA 59.495 40.741 18.47 0.00 35.78 1.31
2952 3052 7.349412 AGAATTCTGTACCCACTGACTATAC 57.651 40.000 7.30 0.00 32.91 1.47
2953 3053 5.769484 ATTCTGTACCCACTGACTATACG 57.231 43.478 0.00 0.00 32.91 3.06
2954 3054 3.548770 TCTGTACCCACTGACTATACGG 58.451 50.000 0.00 0.00 0.00 4.02
2955 3055 2.621998 CTGTACCCACTGACTATACGGG 59.378 54.545 0.00 0.00 43.02 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.164822 TGCTCAAATCTTGCTACTTTGC 57.835 40.909 0.00 0.00 31.50 3.68
172 176 1.074850 CCCTCCTCTCTTCCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
291 305 2.159448 GCGCCACACTTGTAATATGCAA 60.159 45.455 0.00 0.00 0.00 4.08
296 310 2.159014 CCTAGGCGCCACACTTGTAATA 60.159 50.000 31.54 6.89 0.00 0.98
327 342 1.526686 CCCACAGACAGCACTGCAA 60.527 57.895 3.30 0.00 41.06 4.08
441 456 0.033504 TCTGCTGACCCTTTCGTGTC 59.966 55.000 0.00 0.00 0.00 3.67
472 489 1.002468 CACAAACTGACCTGCTTTCGG 60.002 52.381 0.00 0.00 0.00 4.30
503 520 2.473070 TCACATATTTGACCCGAGGGA 58.527 47.619 16.26 0.00 38.96 4.20
509 526 4.498009 CGGCAGAAATCACATATTTGACCC 60.498 45.833 0.00 0.00 0.00 4.46
564 581 1.069771 CGGCTCGCGGTAAAAGAAAAA 60.070 47.619 6.13 0.00 0.00 1.94
582 602 1.934589 TTCTATGGACACGAATGCGG 58.065 50.000 0.00 0.00 43.17 5.69
583 603 3.309682 ACATTTCTATGGACACGAATGCG 59.690 43.478 0.00 0.00 38.66 4.73
584 604 4.332543 TGACATTTCTATGGACACGAATGC 59.667 41.667 0.00 0.00 36.01 3.56
585 605 6.609237 ATGACATTTCTATGGACACGAATG 57.391 37.500 0.00 1.00 36.01 2.67
586 606 8.612619 GTTTATGACATTTCTATGGACACGAAT 58.387 33.333 0.00 0.00 36.01 3.34
587 607 7.604545 TGTTTATGACATTTCTATGGACACGAA 59.395 33.333 0.00 0.00 36.01 3.85
588 608 7.100409 TGTTTATGACATTTCTATGGACACGA 58.900 34.615 0.00 0.00 36.01 4.35
589 609 7.302350 TGTTTATGACATTTCTATGGACACG 57.698 36.000 0.00 0.00 36.01 4.49
617 637 5.684550 AATTCTTCACCTTTGTCGTAACC 57.315 39.130 0.00 0.00 0.00 2.85
690 717 5.157067 GCCAAGTCATCTGAAAAGCTAAAC 58.843 41.667 0.00 0.00 0.00 2.01
725 753 4.514577 CGCACTGGCCGAGTAGGG 62.515 72.222 7.41 0.00 41.48 3.53
761 789 3.451793 CGTTGGATGATGAACGGGA 57.548 52.632 0.00 0.00 40.96 5.14
832 860 4.704103 AGAGGGGTGAGAGGCGCA 62.704 66.667 10.83 0.00 0.00 6.09
878 906 2.122729 CTCCCACTCCCACTCCCA 59.877 66.667 0.00 0.00 0.00 4.37
886 914 4.779733 TCCTCCCGCTCCCACTCC 62.780 72.222 0.00 0.00 0.00 3.85
887 915 3.151022 CTCCTCCCGCTCCCACTC 61.151 72.222 0.00 0.00 0.00 3.51
888 916 3.670629 CTCTCCTCCCGCTCCCACT 62.671 68.421 0.00 0.00 0.00 4.00
955 983 0.254107 AGAGAGGAGGAGGAGGAGGT 60.254 60.000 0.00 0.00 0.00 3.85
962 990 2.495669 GTGTCAAGAAGAGAGGAGGAGG 59.504 54.545 0.00 0.00 0.00 4.30
1593 1627 1.333881 CCTACGCTTACCTCGTGATCG 60.334 57.143 0.00 0.00 40.69 3.69
1643 1692 3.397482 CTCACCCACAACTCTTCTTCTG 58.603 50.000 0.00 0.00 0.00 3.02
1984 2045 0.963962 ACAAGGTTCGCCGTCTTCTA 59.036 50.000 0.00 0.00 43.66 2.10
1999 2060 3.989817 GGCAGTTTGCTTAATTCCACAAG 59.010 43.478 0.67 0.00 44.28 3.16
2001 2062 3.005684 CAGGCAGTTTGCTTAATTCCACA 59.994 43.478 0.67 0.00 44.28 4.17
2037 2098 5.705441 TGCTTGTAAACTTACTGATCCCTTG 59.295 40.000 1.58 0.00 34.77 3.61
2056 2117 4.104696 TCATGATCATGTTGCTTGCTTG 57.895 40.909 30.01 6.86 39.72 4.01
2057 2118 4.021807 TGTTCATGATCATGTTGCTTGCTT 60.022 37.500 30.01 0.00 39.72 3.91
2058 2119 3.508402 TGTTCATGATCATGTTGCTTGCT 59.492 39.130 30.01 0.00 39.72 3.91
2059 2120 3.840468 TGTTCATGATCATGTTGCTTGC 58.160 40.909 30.01 15.71 39.72 4.01
2119 2195 5.574188 ACTAGCAAGGGAGATGAAATTTGT 58.426 37.500 0.00 0.00 0.00 2.83
2151 2227 6.878317 TCACAAGTTATGATTCGGAGAAGAT 58.122 36.000 0.00 0.00 45.90 2.40
2321 2419 3.269592 CCCCCATATCTACACCACCTA 57.730 52.381 0.00 0.00 0.00 3.08
2338 2438 0.034089 AAGCAGACACTATTGCCCCC 60.034 55.000 0.00 0.00 41.17 5.40
2433 2533 6.243551 CCGTTGATAGATTATTTATGCTGCG 58.756 40.000 0.00 0.00 0.00 5.18
2456 2556 5.535753 AAAATTGCCATCTGCTATTACCC 57.464 39.130 0.00 0.00 43.23 3.69
2465 2565 3.181463 CCCATGGGTAAAATTGCCATCTG 60.181 47.826 23.93 0.00 34.27 2.90
2501 2601 1.519898 CCATGCGTGTACGGTACCC 60.520 63.158 15.26 3.24 40.23 3.69
2502 2602 1.519898 CCCATGCGTGTACGGTACC 60.520 63.158 15.26 0.16 40.23 3.34
2503 2603 2.169146 GCCCATGCGTGTACGGTAC 61.169 63.158 11.33 11.33 40.23 3.34
2504 2604 2.184836 GCCCATGCGTGTACGGTA 59.815 61.111 4.96 0.00 40.23 4.02
2505 2605 3.950794 CTGCCCATGCGTGTACGGT 62.951 63.158 4.96 0.00 41.78 4.83
2506 2606 3.195002 CTGCCCATGCGTGTACGG 61.195 66.667 4.96 0.00 41.78 4.02
2507 2607 3.195002 CCTGCCCATGCGTGTACG 61.195 66.667 4.96 0.00 41.78 3.67
2508 2608 2.246761 TACCCTGCCCATGCGTGTAC 62.247 60.000 4.96 0.00 41.78 2.90
2509 2609 1.341913 ATACCCTGCCCATGCGTGTA 61.342 55.000 4.96 0.00 41.78 2.90
2510 2610 2.679342 ATACCCTGCCCATGCGTGT 61.679 57.895 4.96 0.00 41.78 4.49
2511 2611 2.188829 CATACCCTGCCCATGCGTG 61.189 63.158 0.00 0.00 41.78 5.34
2512 2612 2.192979 CATACCCTGCCCATGCGT 59.807 61.111 0.00 0.00 41.78 5.24
2513 2613 2.595463 CCATACCCTGCCCATGCG 60.595 66.667 0.00 0.00 41.78 4.73
2514 2614 2.203538 CCCATACCCTGCCCATGC 60.204 66.667 0.00 0.00 38.26 4.06
2515 2615 2.203538 GCCCATACCCTGCCCATG 60.204 66.667 0.00 0.00 0.00 3.66
2516 2616 2.699554 TGCCCATACCCTGCCCAT 60.700 61.111 0.00 0.00 0.00 4.00
2517 2617 3.738481 GTGCCCATACCCTGCCCA 61.738 66.667 0.00 0.00 0.00 5.36
2518 2618 3.738481 TGTGCCCATACCCTGCCC 61.738 66.667 0.00 0.00 0.00 5.36
2519 2619 2.440247 GTGTGCCCATACCCTGCC 60.440 66.667 0.00 0.00 0.00 4.85
2520 2620 0.611896 AAAGTGTGCCCATACCCTGC 60.612 55.000 0.00 0.00 0.00 4.85
2521 2621 1.923356 AAAAGTGTGCCCATACCCTG 58.077 50.000 0.00 0.00 0.00 4.45
2522 2622 4.385977 GGTATAAAAGTGTGCCCATACCCT 60.386 45.833 0.00 0.00 34.39 4.34
2523 2623 3.887110 GGTATAAAAGTGTGCCCATACCC 59.113 47.826 0.00 0.00 34.39 3.69
2524 2624 3.887110 GGGTATAAAAGTGTGCCCATACC 59.113 47.826 0.00 0.00 40.10 2.73
2525 2625 4.528920 TGGGTATAAAAGTGTGCCCATAC 58.471 43.478 0.00 0.00 44.27 2.39
2526 2626 4.864483 TGGGTATAAAAGTGTGCCCATA 57.136 40.909 0.00 0.00 44.27 2.74
2527 2627 3.748645 TGGGTATAAAAGTGTGCCCAT 57.251 42.857 0.00 0.00 44.27 4.00
2529 2629 2.693074 CCATGGGTATAAAAGTGTGCCC 59.307 50.000 2.85 0.00 40.67 5.36
2530 2630 2.693074 CCCATGGGTATAAAAGTGTGCC 59.307 50.000 23.93 0.00 0.00 5.01
2551 2651 2.158460 ACGGGTAGGGTATGGGTACTAC 60.158 54.545 0.00 0.00 36.07 2.73
2552 2652 2.143602 ACGGGTAGGGTATGGGTACTA 58.856 52.381 0.00 0.00 0.00 1.82
2553 2653 0.936691 ACGGGTAGGGTATGGGTACT 59.063 55.000 0.00 0.00 0.00 2.73
2554 2654 1.793414 AACGGGTAGGGTATGGGTAC 58.207 55.000 0.00 0.00 0.00 3.34
2555 2655 3.052186 ACTTAACGGGTAGGGTATGGGTA 60.052 47.826 0.00 0.00 0.00 3.69
2556 2656 2.293118 ACTTAACGGGTAGGGTATGGGT 60.293 50.000 0.00 0.00 0.00 4.51
2557 2657 2.401568 ACTTAACGGGTAGGGTATGGG 58.598 52.381 0.00 0.00 0.00 4.00
2558 2658 5.544650 CATAACTTAACGGGTAGGGTATGG 58.455 45.833 11.32 0.00 36.35 2.74
2559 2659 5.511888 CCCATAACTTAACGGGTAGGGTATG 60.512 48.000 12.02 12.02 38.57 2.39
2560 2660 4.594491 CCCATAACTTAACGGGTAGGGTAT 59.406 45.833 0.00 0.00 33.67 2.73
2561 2661 3.966665 CCCATAACTTAACGGGTAGGGTA 59.033 47.826 0.00 0.00 33.67 3.69
2562 2662 2.773661 CCCATAACTTAACGGGTAGGGT 59.226 50.000 0.00 0.00 33.67 4.34
2563 2663 3.480505 CCCATAACTTAACGGGTAGGG 57.519 52.381 0.00 0.00 33.67 3.53
2568 2668 2.773661 ACCCTACCCATAACTTAACGGG 59.226 50.000 0.00 0.00 44.88 5.28
2569 2669 4.499696 CGTACCCTACCCATAACTTAACGG 60.500 50.000 0.00 0.00 0.00 4.44
2570 2670 4.499696 CCGTACCCTACCCATAACTTAACG 60.500 50.000 0.00 0.00 0.00 3.18
2571 2671 4.202253 CCCGTACCCTACCCATAACTTAAC 60.202 50.000 0.00 0.00 0.00 2.01
2572 2672 3.966665 CCCGTACCCTACCCATAACTTAA 59.033 47.826 0.00 0.00 0.00 1.85
2573 2673 3.052186 ACCCGTACCCTACCCATAACTTA 60.052 47.826 0.00 0.00 0.00 2.24
2574 2674 2.293118 ACCCGTACCCTACCCATAACTT 60.293 50.000 0.00 0.00 0.00 2.66
2575 2675 1.291939 ACCCGTACCCTACCCATAACT 59.708 52.381 0.00 0.00 0.00 2.24
2576 2676 1.793414 ACCCGTACCCTACCCATAAC 58.207 55.000 0.00 0.00 0.00 1.89
2577 2677 3.921287 ATACCCGTACCCTACCCATAA 57.079 47.619 0.00 0.00 0.00 1.90
2578 2678 3.309121 GCTATACCCGTACCCTACCCATA 60.309 52.174 0.00 0.00 0.00 2.74
2579 2679 2.558350 GCTATACCCGTACCCTACCCAT 60.558 54.545 0.00 0.00 0.00 4.00
2580 2680 1.203050 GCTATACCCGTACCCTACCCA 60.203 57.143 0.00 0.00 0.00 4.51
2581 2681 1.550327 GCTATACCCGTACCCTACCC 58.450 60.000 0.00 0.00 0.00 3.69
2582 2682 1.076187 AGGCTATACCCGTACCCTACC 59.924 57.143 0.00 0.00 40.58 3.18
2583 2683 2.560105 CAAGGCTATACCCGTACCCTAC 59.440 54.545 0.00 0.00 40.58 3.18
2584 2684 2.177669 ACAAGGCTATACCCGTACCCTA 59.822 50.000 0.00 0.00 40.58 3.53
2585 2685 1.062658 ACAAGGCTATACCCGTACCCT 60.063 52.381 0.00 0.00 40.58 4.34
2586 2686 1.417288 ACAAGGCTATACCCGTACCC 58.583 55.000 0.00 0.00 40.58 3.69
2587 2687 3.650070 GTACAAGGCTATACCCGTACC 57.350 52.381 0.00 0.00 39.97 3.34
2588 2688 3.650070 GGTACAAGGCTATACCCGTAC 57.350 52.381 14.29 7.38 42.91 3.67
2593 2693 1.069668 CCGTGGGTACAAGGCTATACC 59.930 57.143 16.16 16.16 39.36 2.73
2594 2694 1.069668 CCCGTGGGTACAAGGCTATAC 59.930 57.143 0.00 0.00 43.84 1.47
2595 2695 1.416243 CCCGTGGGTACAAGGCTATA 58.584 55.000 0.00 0.00 43.84 1.31
2596 2696 2.218066 CCCGTGGGTACAAGGCTAT 58.782 57.895 0.00 0.00 43.84 2.97
2597 2697 3.716381 CCCGTGGGTACAAGGCTA 58.284 61.111 0.00 0.00 43.84 3.93
2614 2714 2.613129 ACGGGAAGGGTATGGGTATAC 58.387 52.381 0.00 0.00 38.74 1.47
2615 2715 3.349375 AACGGGAAGGGTATGGGTATA 57.651 47.619 0.00 0.00 0.00 1.47
2616 2716 2.173996 CAAACGGGAAGGGTATGGGTAT 59.826 50.000 0.00 0.00 0.00 2.73
2617 2717 1.560611 CAAACGGGAAGGGTATGGGTA 59.439 52.381 0.00 0.00 0.00 3.69
2618 2718 0.330267 CAAACGGGAAGGGTATGGGT 59.670 55.000 0.00 0.00 0.00 4.51
2619 2719 0.330267 ACAAACGGGAAGGGTATGGG 59.670 55.000 0.00 0.00 0.00 4.00
2620 2720 1.003812 TCACAAACGGGAAGGGTATGG 59.996 52.381 0.00 0.00 0.00 2.74
2621 2721 2.483014 TCACAAACGGGAAGGGTATG 57.517 50.000 0.00 0.00 0.00 2.39
2622 2722 2.374170 AGTTCACAAACGGGAAGGGTAT 59.626 45.455 0.00 0.00 40.48 2.73
2623 2723 1.770061 AGTTCACAAACGGGAAGGGTA 59.230 47.619 0.00 0.00 40.48 3.69
2624 2724 0.549469 AGTTCACAAACGGGAAGGGT 59.451 50.000 0.00 0.00 40.48 4.34
2625 2725 2.554370 TAGTTCACAAACGGGAAGGG 57.446 50.000 0.00 0.00 40.48 3.95
2626 2726 3.818773 ACATTAGTTCACAAACGGGAAGG 59.181 43.478 0.00 0.00 40.48 3.46
2627 2727 5.432885 AACATTAGTTCACAAACGGGAAG 57.567 39.130 0.00 0.00 40.48 3.46
2628 2728 6.939132 TTAACATTAGTTCACAAACGGGAA 57.061 33.333 0.00 0.00 40.48 3.97
2629 2729 7.513371 AATTAACATTAGTTCACAAACGGGA 57.487 32.000 0.00 0.00 40.48 5.14
2630 2730 7.650104 ACAAATTAACATTAGTTCACAAACGGG 59.350 33.333 0.00 0.00 40.48 5.28
2631 2731 8.568732 ACAAATTAACATTAGTTCACAAACGG 57.431 30.769 0.00 0.00 40.48 4.44
2632 2732 8.406716 CGACAAATTAACATTAGTTCACAAACG 58.593 33.333 0.00 0.00 40.48 3.60
2633 2733 9.228636 ACGACAAATTAACATTAGTTCACAAAC 57.771 29.630 0.00 0.00 39.15 2.93
2634 2734 9.440784 GACGACAAATTAACATTAGTTCACAAA 57.559 29.630 0.00 0.00 39.15 2.83
2635 2735 8.613482 TGACGACAAATTAACATTAGTTCACAA 58.387 29.630 0.00 0.00 39.15 3.33
2636 2736 8.144155 TGACGACAAATTAACATTAGTTCACA 57.856 30.769 0.00 0.00 39.15 3.58
2637 2737 8.996988 TTGACGACAAATTAACATTAGTTCAC 57.003 30.769 0.00 0.00 34.76 3.18
2651 2751 9.825972 CAAGTTAATGACTAATTGACGACAAAT 57.174 29.630 4.09 0.00 39.23 2.32
2652 2752 8.832521 ACAAGTTAATGACTAATTGACGACAAA 58.167 29.630 4.09 0.00 39.23 2.83
2653 2753 8.373048 ACAAGTTAATGACTAATTGACGACAA 57.627 30.769 2.18 2.18 39.23 3.18
2654 2754 7.654116 TGACAAGTTAATGACTAATTGACGACA 59.346 33.333 0.00 0.00 39.23 4.35
2655 2755 8.014322 TGACAAGTTAATGACTAATTGACGAC 57.986 34.615 0.00 0.00 39.23 4.34
2656 2756 8.655970 CATGACAAGTTAATGACTAATTGACGA 58.344 33.333 0.00 0.00 39.23 4.20
2657 2757 8.443160 ACATGACAAGTTAATGACTAATTGACG 58.557 33.333 0.00 0.00 39.23 4.35
2658 2758 9.546909 CACATGACAAGTTAATGACTAATTGAC 57.453 33.333 0.00 0.00 37.72 3.18
2659 2759 9.500785 TCACATGACAAGTTAATGACTAATTGA 57.499 29.630 0.00 0.00 37.72 2.57
2660 2760 9.546909 GTCACATGACAAGTTAATGACTAATTG 57.453 33.333 7.15 0.00 44.18 2.32
2677 2777 3.011119 AGGAGTAGACGAGTCACATGAC 58.989 50.000 0.00 3.72 45.08 3.06
2678 2778 3.351794 AGGAGTAGACGAGTCACATGA 57.648 47.619 0.00 0.00 0.00 3.07
2679 2779 5.297029 TCAATAGGAGTAGACGAGTCACATG 59.703 44.000 5.99 0.00 0.00 3.21
2680 2780 5.297278 GTCAATAGGAGTAGACGAGTCACAT 59.703 44.000 5.99 0.00 0.00 3.21
2681 2781 4.634883 GTCAATAGGAGTAGACGAGTCACA 59.365 45.833 5.99 0.00 0.00 3.58
2682 2782 4.634883 TGTCAATAGGAGTAGACGAGTCAC 59.365 45.833 5.99 2.50 33.83 3.67
2683 2783 4.840271 TGTCAATAGGAGTAGACGAGTCA 58.160 43.478 5.99 0.00 33.83 3.41
2684 2784 7.493743 TTATGTCAATAGGAGTAGACGAGTC 57.506 40.000 0.00 0.00 33.83 3.36
2685 2785 9.221933 CTATTATGTCAATAGGAGTAGACGAGT 57.778 37.037 0.00 0.00 33.83 4.18
2686 2786 9.221933 ACTATTATGTCAATAGGAGTAGACGAG 57.778 37.037 8.45 0.00 35.18 4.18
2695 2795 9.996554 CCACAACATACTATTATGTCAATAGGA 57.003 33.333 6.23 1.01 46.45 2.94
2696 2796 9.778741 ACCACAACATACTATTATGTCAATAGG 57.221 33.333 6.23 7.17 46.45 2.57
2700 2800 9.733556 AGAAACCACAACATACTATTATGTCAA 57.266 29.630 6.23 0.00 46.45 3.18
2717 2817 9.921637 GACCAATATCAAAATTTAGAAACCACA 57.078 29.630 0.00 0.00 0.00 4.17
2718 2818 9.921637 TGACCAATATCAAAATTTAGAAACCAC 57.078 29.630 0.00 0.00 0.00 4.16
2729 2829 9.396022 AGACGAGTAAATGACCAATATCAAAAT 57.604 29.630 0.00 0.00 30.82 1.82
2730 2830 8.786826 AGACGAGTAAATGACCAATATCAAAA 57.213 30.769 0.00 0.00 30.82 2.44
2731 2831 9.309516 GTAGACGAGTAAATGACCAATATCAAA 57.690 33.333 0.00 0.00 30.82 2.69
2732 2832 7.924412 GGTAGACGAGTAAATGACCAATATCAA 59.076 37.037 0.00 0.00 30.82 2.57
2733 2833 7.287005 AGGTAGACGAGTAAATGACCAATATCA 59.713 37.037 0.00 0.00 0.00 2.15
2734 2834 7.595502 CAGGTAGACGAGTAAATGACCAATATC 59.404 40.741 0.00 0.00 0.00 1.63
2735 2835 7.069578 ACAGGTAGACGAGTAAATGACCAATAT 59.930 37.037 0.00 0.00 0.00 1.28
2736 2836 6.379133 ACAGGTAGACGAGTAAATGACCAATA 59.621 38.462 0.00 0.00 0.00 1.90
2737 2837 5.187186 ACAGGTAGACGAGTAAATGACCAAT 59.813 40.000 0.00 0.00 0.00 3.16
2738 2838 4.525487 ACAGGTAGACGAGTAAATGACCAA 59.475 41.667 0.00 0.00 0.00 3.67
2739 2839 4.084287 ACAGGTAGACGAGTAAATGACCA 58.916 43.478 0.00 0.00 0.00 4.02
2740 2840 4.715527 ACAGGTAGACGAGTAAATGACC 57.284 45.455 0.00 0.00 0.00 4.02
2741 2841 6.746364 CAGTAACAGGTAGACGAGTAAATGAC 59.254 42.308 0.00 0.00 0.00 3.06
2742 2842 6.656270 TCAGTAACAGGTAGACGAGTAAATGA 59.344 38.462 0.00 0.00 0.00 2.57
2743 2843 6.849502 TCAGTAACAGGTAGACGAGTAAATG 58.150 40.000 0.00 0.00 0.00 2.32
2744 2844 6.404513 GCTCAGTAACAGGTAGACGAGTAAAT 60.405 42.308 0.00 0.00 0.00 1.40
2745 2845 5.106396 GCTCAGTAACAGGTAGACGAGTAAA 60.106 44.000 0.00 0.00 0.00 2.01
2746 2846 4.394300 GCTCAGTAACAGGTAGACGAGTAA 59.606 45.833 0.00 0.00 0.00 2.24
2747 2847 3.937706 GCTCAGTAACAGGTAGACGAGTA 59.062 47.826 0.00 0.00 0.00 2.59
2748 2848 2.748532 GCTCAGTAACAGGTAGACGAGT 59.251 50.000 0.00 0.00 0.00 4.18
2749 2849 3.011119 AGCTCAGTAACAGGTAGACGAG 58.989 50.000 0.00 0.00 0.00 4.18
2750 2850 2.747989 CAGCTCAGTAACAGGTAGACGA 59.252 50.000 0.00 0.00 0.00 4.20
2751 2851 2.747989 TCAGCTCAGTAACAGGTAGACG 59.252 50.000 0.00 0.00 0.00 4.18
2752 2852 4.011023 TCTCAGCTCAGTAACAGGTAGAC 58.989 47.826 0.00 0.00 0.00 2.59
2753 2853 4.302559 TCTCAGCTCAGTAACAGGTAGA 57.697 45.455 0.00 0.00 0.00 2.59
2754 2854 6.701145 TTATCTCAGCTCAGTAACAGGTAG 57.299 41.667 0.00 0.00 0.00 3.18
2755 2855 7.342026 TCAATTATCTCAGCTCAGTAACAGGTA 59.658 37.037 0.00 0.00 0.00 3.08
2756 2856 6.155221 TCAATTATCTCAGCTCAGTAACAGGT 59.845 38.462 0.00 0.00 0.00 4.00
2757 2857 6.577103 TCAATTATCTCAGCTCAGTAACAGG 58.423 40.000 0.00 0.00 0.00 4.00
2758 2858 8.659925 AATCAATTATCTCAGCTCAGTAACAG 57.340 34.615 0.00 0.00 0.00 3.16
2759 2859 9.453572 AAAATCAATTATCTCAGCTCAGTAACA 57.546 29.630 0.00 0.00 0.00 2.41
2783 2883 8.924691 GCTCATTAATAGCACATTTGACAAAAA 58.075 29.630 4.41 0.00 39.83 1.94
2784 2884 8.087136 TGCTCATTAATAGCACATTTGACAAAA 58.913 29.630 4.41 0.00 44.78 2.44
2785 2885 7.600960 TGCTCATTAATAGCACATTTGACAAA 58.399 30.769 2.48 2.48 44.78 2.83
2786 2886 7.155655 TGCTCATTAATAGCACATTTGACAA 57.844 32.000 12.65 0.00 44.78 3.18
2787 2887 6.756299 TGCTCATTAATAGCACATTTGACA 57.244 33.333 12.65 0.00 44.78 3.58
2801 2901 9.979578 AGTTGTTCACAATTTTATGCTCATTAA 57.020 25.926 0.00 0.00 38.24 1.40
2802 2902 9.979578 AAGTTGTTCACAATTTTATGCTCATTA 57.020 25.926 0.00 0.00 38.24 1.90
2803 2903 8.891671 AAGTTGTTCACAATTTTATGCTCATT 57.108 26.923 0.00 0.00 38.24 2.57
2805 2905 9.409312 CATAAGTTGTTCACAATTTTATGCTCA 57.591 29.630 17.68 0.00 38.22 4.26
2806 2906 9.410556 ACATAAGTTGTTCACAATTTTATGCTC 57.589 29.630 23.35 3.10 42.32 4.26
2822 2922 9.662947 GGGTAGAACAAATAGTACATAAGTTGT 57.337 33.333 0.00 0.00 42.62 3.32
2823 2923 8.814235 CGGGTAGAACAAATAGTACATAAGTTG 58.186 37.037 0.00 0.00 0.00 3.16
2824 2924 8.534496 ACGGGTAGAACAAATAGTACATAAGTT 58.466 33.333 0.00 0.00 0.00 2.66
2825 2925 8.071177 ACGGGTAGAACAAATAGTACATAAGT 57.929 34.615 0.00 0.00 0.00 2.24
2826 2926 8.814235 CAACGGGTAGAACAAATAGTACATAAG 58.186 37.037 0.00 0.00 0.00 1.73
2827 2927 7.765360 CCAACGGGTAGAACAAATAGTACATAA 59.235 37.037 0.00 0.00 0.00 1.90
2828 2928 7.267128 CCAACGGGTAGAACAAATAGTACATA 58.733 38.462 0.00 0.00 0.00 2.29
2829 2929 6.110707 CCAACGGGTAGAACAAATAGTACAT 58.889 40.000 0.00 0.00 0.00 2.29
2830 2930 5.481105 CCAACGGGTAGAACAAATAGTACA 58.519 41.667 0.00 0.00 0.00 2.90
2831 2931 4.872124 CCCAACGGGTAGAACAAATAGTAC 59.128 45.833 0.00 0.00 38.25 2.73
2832 2932 5.088680 CCCAACGGGTAGAACAAATAGTA 57.911 43.478 0.00 0.00 38.25 1.82
2833 2933 3.946606 CCCAACGGGTAGAACAAATAGT 58.053 45.455 0.00 0.00 38.25 2.12
2875 2975 1.669440 CCATACCCATACCCGACGG 59.331 63.158 6.99 6.99 0.00 4.79
2876 2976 1.117142 ACCCATACCCATACCCGACG 61.117 60.000 0.00 0.00 0.00 5.12
2877 2977 2.014010 TACCCATACCCATACCCGAC 57.986 55.000 0.00 0.00 0.00 4.79
2878 2978 2.791309 TTACCCATACCCATACCCGA 57.209 50.000 0.00 0.00 0.00 5.14
2879 2979 2.707257 ACTTTACCCATACCCATACCCG 59.293 50.000 0.00 0.00 0.00 5.28
2880 2980 4.801521 AACTTTACCCATACCCATACCC 57.198 45.455 0.00 0.00 0.00 3.69
2881 2981 5.757988 TGAAACTTTACCCATACCCATACC 58.242 41.667 0.00 0.00 0.00 2.73
2882 2982 8.843262 GTTATGAAACTTTACCCATACCCATAC 58.157 37.037 0.00 0.00 32.54 2.39
2883 2983 8.000127 GGTTATGAAACTTTACCCATACCCATA 59.000 37.037 0.00 0.00 35.81 2.74
2884 2984 6.837048 GGTTATGAAACTTTACCCATACCCAT 59.163 38.462 0.00 0.00 35.81 4.00
2885 2985 6.189133 GGTTATGAAACTTTACCCATACCCA 58.811 40.000 0.00 0.00 35.81 4.51
2886 2986 6.189133 TGGTTATGAAACTTTACCCATACCC 58.811 40.000 0.00 0.00 35.81 3.69
2887 2987 7.201875 CCATGGTTATGAAACTTTACCCATACC 60.202 40.741 2.57 0.00 36.36 2.73
2888 2988 7.201875 CCCATGGTTATGAAACTTTACCCATAC 60.202 40.741 11.73 0.00 36.36 2.39
2889 2989 6.836527 CCCATGGTTATGAAACTTTACCCATA 59.163 38.462 11.73 0.00 36.36 2.74
2890 2990 5.660864 CCCATGGTTATGAAACTTTACCCAT 59.339 40.000 11.73 0.00 36.36 4.00
2891 2991 5.020132 CCCATGGTTATGAAACTTTACCCA 58.980 41.667 11.73 0.00 36.36 4.51
2892 2992 5.020795 ACCCATGGTTATGAAACTTTACCC 58.979 41.667 11.73 0.00 36.36 3.69
2893 2993 6.183360 CGTACCCATGGTTATGAAACTTTACC 60.183 42.308 11.73 0.00 37.09 2.85
2894 2994 6.183360 CCGTACCCATGGTTATGAAACTTTAC 60.183 42.308 11.73 0.00 37.09 2.01
2895 2995 5.881443 CCGTACCCATGGTTATGAAACTTTA 59.119 40.000 11.73 0.00 37.09 1.85
2896 2996 4.703093 CCGTACCCATGGTTATGAAACTTT 59.297 41.667 11.73 0.00 37.09 2.66
2897 2997 4.266714 CCGTACCCATGGTTATGAAACTT 58.733 43.478 11.73 0.00 37.09 2.66
2898 2998 3.371166 CCCGTACCCATGGTTATGAAACT 60.371 47.826 11.73 0.00 37.09 2.66
2899 2999 2.946990 CCCGTACCCATGGTTATGAAAC 59.053 50.000 11.73 0.00 37.09 2.78
2900 3000 2.577105 ACCCGTACCCATGGTTATGAAA 59.423 45.455 11.73 0.00 37.09 2.69
2901 3001 2.198336 ACCCGTACCCATGGTTATGAA 58.802 47.619 11.73 0.00 37.09 2.57
2902 3002 1.882308 ACCCGTACCCATGGTTATGA 58.118 50.000 11.73 0.00 37.09 2.15
2903 3003 3.558321 CCATACCCGTACCCATGGTTATG 60.558 52.174 11.73 6.24 36.45 1.90
2904 3004 2.640826 CCATACCCGTACCCATGGTTAT 59.359 50.000 11.73 0.00 37.09 1.89
2905 3005 2.048601 CCATACCCGTACCCATGGTTA 58.951 52.381 11.73 0.00 37.09 2.85
2906 3006 0.841289 CCATACCCGTACCCATGGTT 59.159 55.000 11.73 0.00 37.09 3.67
2907 3007 1.057851 CCCATACCCGTACCCATGGT 61.058 60.000 11.73 1.30 36.92 3.55
2908 3008 1.057851 ACCCATACCCGTACCCATGG 61.058 60.000 4.14 4.14 38.13 3.66
2909 3009 1.621814 CTACCCATACCCGTACCCATG 59.378 57.143 0.00 0.00 0.00 3.66
2910 3010 1.504660 TCTACCCATACCCGTACCCAT 59.495 52.381 0.00 0.00 0.00 4.00
2911 3011 0.932955 TCTACCCATACCCGTACCCA 59.067 55.000 0.00 0.00 0.00 4.51
2912 3012 2.086610 TTCTACCCATACCCGTACCC 57.913 55.000 0.00 0.00 0.00 3.69
2913 3013 3.899980 AGAATTCTACCCATACCCGTACC 59.100 47.826 6.06 0.00 0.00 3.34
2914 3014 4.343239 ACAGAATTCTACCCATACCCGTAC 59.657 45.833 7.86 0.00 0.00 3.67
2915 3015 4.549668 ACAGAATTCTACCCATACCCGTA 58.450 43.478 7.86 0.00 0.00 4.02
2916 3016 3.381335 ACAGAATTCTACCCATACCCGT 58.619 45.455 7.86 0.00 0.00 5.28
2917 3017 4.262335 GGTACAGAATTCTACCCATACCCG 60.262 50.000 14.31 0.00 0.00 5.28
2918 3018 5.224821 GGTACAGAATTCTACCCATACCC 57.775 47.826 14.31 1.60 0.00 3.69
2925 3025 4.466726 AGTCAGTGGGTACAGAATTCTACC 59.533 45.833 16.27 16.27 0.00 3.18
2926 3026 5.662674 AGTCAGTGGGTACAGAATTCTAC 57.337 43.478 7.86 3.62 0.00 2.59
2927 3027 7.228108 CGTATAGTCAGTGGGTACAGAATTCTA 59.772 40.741 7.86 0.00 0.00 2.10
2928 3028 6.039493 CGTATAGTCAGTGGGTACAGAATTCT 59.961 42.308 0.88 0.88 0.00 2.40
2929 3029 6.207213 CGTATAGTCAGTGGGTACAGAATTC 58.793 44.000 0.00 0.00 0.00 2.17
2930 3030 5.068723 CCGTATAGTCAGTGGGTACAGAATT 59.931 44.000 0.00 0.00 0.00 2.17
2931 3031 4.583489 CCGTATAGTCAGTGGGTACAGAAT 59.417 45.833 0.00 0.00 0.00 2.40
2932 3032 3.949754 CCGTATAGTCAGTGGGTACAGAA 59.050 47.826 0.00 0.00 0.00 3.02
2933 3033 3.548770 CCGTATAGTCAGTGGGTACAGA 58.451 50.000 0.00 0.00 0.00 3.41
2934 3034 2.621998 CCCGTATAGTCAGTGGGTACAG 59.378 54.545 0.00 0.00 35.05 2.74
2935 3035 2.658285 CCCGTATAGTCAGTGGGTACA 58.342 52.381 0.00 0.00 35.05 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.