Multiple sequence alignment - TraesCS4D01G129000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G129000 chr4D 100.000 3354 0 0 1 3354 113934630 113931277 0.000000e+00 6194.0
1 TraesCS4D01G129000 chr4D 97.020 302 2 1 254 548 113934082 113933781 5.000000e-138 501.0
2 TraesCS4D01G129000 chr4D 97.020 302 2 1 549 850 113934377 113934083 5.000000e-138 501.0
3 TraesCS4D01G129000 chr4D 93.004 243 14 2 1 240 403843675 403843917 5.320000e-93 351.0
4 TraesCS4D01G129000 chr4A 93.742 2397 99 22 990 3354 463542757 463545134 0.000000e+00 3548.0
5 TraesCS4D01G129000 chr4A 88.000 125 15 0 3043 3167 79049455 79049579 7.500000e-32 148.0
6 TraesCS4D01G129000 chr4B 91.050 1609 90 32 636 2216 174696827 174695245 0.000000e+00 2124.0
7 TraesCS4D01G129000 chr4B 90.290 1174 72 12 2203 3354 174695088 174693935 0.000000e+00 1498.0
8 TraesCS4D01G129000 chr2A 81.768 181 30 3 1 179 233457727 233457548 7.500000e-32 148.0
9 TraesCS4D01G129000 chr5A 82.569 109 9 7 637 739 453189930 453189826 1.660000e-13 87.9
10 TraesCS4D01G129000 chr3D 90.476 63 6 0 3086 3148 567142214 567142276 2.140000e-12 84.2
11 TraesCS4D01G129000 chr7D 83.333 84 9 4 658 739 208679377 208679457 4.640000e-09 73.1
12 TraesCS4D01G129000 chr6B 84.375 64 8 2 700 763 32943851 32943790 1.000000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G129000 chr4D 113931277 113934630 3353 True 2398.666667 6194 98.013333 1 3354 3 chr4D.!!$R1 3353
1 TraesCS4D01G129000 chr4A 463542757 463545134 2377 False 3548.000000 3548 93.742000 990 3354 1 chr4A.!!$F2 2364
2 TraesCS4D01G129000 chr4B 174693935 174696827 2892 True 1811.000000 2124 90.670000 636 3354 2 chr4B.!!$R1 2718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.038251 TCGCGCTGAACTGAATCACT 60.038 50.0 5.56 0.0 0.00 3.41 F
131 132 0.103390 TTGCGAGTTCGGTTCACTGA 59.897 50.0 3.50 0.0 40.23 3.41 F
187 188 0.236187 TATTTTTCTGCGCACGCGTT 59.764 45.0 10.22 0.0 45.51 4.84 F
564 565 0.380378 TTTCTGCAACACGGCAACTC 59.620 50.0 0.00 0.0 44.40 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1811 0.680061 ATCGGTAAGAATCCCGCTCC 59.320 55.000 0.00 0.00 43.87 4.70 R
1835 1865 3.928375 GCAAGATGGCCACTTATTTGTTG 59.072 43.478 8.16 7.51 0.00 3.33 R
1961 1995 4.025229 CACATGTGCGTTATAGGCGTATTT 60.025 41.667 13.94 0.00 0.00 1.40 R
2563 2785 1.141449 CTCTCTTCTCCTGCCGCTG 59.859 63.158 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.066000 GCGAGATATGTAGCGCTGC 58.934 57.895 22.90 21.06 45.41 5.25
22 23 0.387878 GCGAGATATGTAGCGCTGCT 60.388 55.000 25.90 13.86 45.41 4.24
23 24 1.135660 GCGAGATATGTAGCGCTGCTA 60.136 52.381 25.90 15.49 45.41 3.49
33 34 2.125912 CGCTGCTACGCTGGTTCT 60.126 61.111 0.00 0.00 0.00 3.01
34 35 1.738099 CGCTGCTACGCTGGTTCTT 60.738 57.895 0.00 0.00 0.00 2.52
35 36 0.457853 CGCTGCTACGCTGGTTCTTA 60.458 55.000 0.00 0.00 0.00 2.10
36 37 1.722011 GCTGCTACGCTGGTTCTTAA 58.278 50.000 0.00 0.00 0.00 1.85
37 38 2.073816 GCTGCTACGCTGGTTCTTAAA 58.926 47.619 0.00 0.00 0.00 1.52
38 39 2.678336 GCTGCTACGCTGGTTCTTAAAT 59.322 45.455 0.00 0.00 0.00 1.40
39 40 3.869246 GCTGCTACGCTGGTTCTTAAATA 59.131 43.478 0.00 0.00 0.00 1.40
40 41 4.331717 GCTGCTACGCTGGTTCTTAAATAA 59.668 41.667 0.00 0.00 0.00 1.40
41 42 5.007724 GCTGCTACGCTGGTTCTTAAATAAT 59.992 40.000 0.00 0.00 0.00 1.28
42 43 6.202188 GCTGCTACGCTGGTTCTTAAATAATA 59.798 38.462 0.00 0.00 0.00 0.98
43 44 7.095187 GCTGCTACGCTGGTTCTTAAATAATAT 60.095 37.037 0.00 0.00 0.00 1.28
44 45 8.306680 TGCTACGCTGGTTCTTAAATAATATC 57.693 34.615 0.00 0.00 0.00 1.63
45 46 7.115805 TGCTACGCTGGTTCTTAAATAATATCG 59.884 37.037 0.00 0.00 0.00 2.92
46 47 6.224420 ACGCTGGTTCTTAAATAATATCGC 57.776 37.500 0.00 0.00 0.00 4.58
47 48 5.107607 ACGCTGGTTCTTAAATAATATCGCG 60.108 40.000 0.00 0.00 40.07 5.87
48 49 5.080068 GCTGGTTCTTAAATAATATCGCGC 58.920 41.667 0.00 0.00 0.00 6.86
49 50 5.107065 GCTGGTTCTTAAATAATATCGCGCT 60.107 40.000 5.56 0.00 0.00 5.92
50 51 6.223138 TGGTTCTTAAATAATATCGCGCTG 57.777 37.500 5.56 0.00 0.00 5.18
51 52 5.986741 TGGTTCTTAAATAATATCGCGCTGA 59.013 36.000 5.56 4.94 0.00 4.26
52 53 6.480651 TGGTTCTTAAATAATATCGCGCTGAA 59.519 34.615 5.56 0.00 0.00 3.02
53 54 6.790825 GGTTCTTAAATAATATCGCGCTGAAC 59.209 38.462 5.56 0.00 0.00 3.18
54 55 7.307219 GGTTCTTAAATAATATCGCGCTGAACT 60.307 37.037 5.56 0.00 32.33 3.01
55 56 7.105494 TCTTAAATAATATCGCGCTGAACTG 57.895 36.000 5.56 0.00 0.00 3.16
56 57 6.921307 TCTTAAATAATATCGCGCTGAACTGA 59.079 34.615 5.56 0.00 0.00 3.41
57 58 5.984233 AAATAATATCGCGCTGAACTGAA 57.016 34.783 5.56 0.00 0.00 3.02
58 59 6.545504 AAATAATATCGCGCTGAACTGAAT 57.454 33.333 5.56 0.00 0.00 2.57
59 60 5.769967 ATAATATCGCGCTGAACTGAATC 57.230 39.130 5.56 0.00 0.00 2.52
60 61 2.577449 TATCGCGCTGAACTGAATCA 57.423 45.000 5.56 0.00 0.00 2.57
61 62 1.002366 ATCGCGCTGAACTGAATCAC 58.998 50.000 5.56 0.00 0.00 3.06
62 63 0.038251 TCGCGCTGAACTGAATCACT 60.038 50.000 5.56 0.00 0.00 3.41
63 64 1.201414 TCGCGCTGAACTGAATCACTA 59.799 47.619 5.56 0.00 0.00 2.74
64 65 1.585668 CGCGCTGAACTGAATCACTAG 59.414 52.381 5.56 0.00 0.00 2.57
65 66 1.325943 GCGCTGAACTGAATCACTAGC 59.674 52.381 0.00 0.00 0.00 3.42
66 67 2.610433 CGCTGAACTGAATCACTAGCA 58.390 47.619 0.00 0.00 0.00 3.49
67 68 2.602211 CGCTGAACTGAATCACTAGCAG 59.398 50.000 0.00 0.00 35.81 4.24
68 69 2.935201 GCTGAACTGAATCACTAGCAGG 59.065 50.000 0.00 0.00 34.05 4.85
69 70 2.935201 CTGAACTGAATCACTAGCAGGC 59.065 50.000 0.00 0.00 34.05 4.85
70 71 2.302733 TGAACTGAATCACTAGCAGGCA 59.697 45.455 0.00 0.00 34.05 4.75
71 72 2.687700 ACTGAATCACTAGCAGGCAG 57.312 50.000 0.00 0.00 34.05 4.85
72 73 1.905215 ACTGAATCACTAGCAGGCAGT 59.095 47.619 0.00 0.00 34.05 4.40
73 74 3.099905 ACTGAATCACTAGCAGGCAGTA 58.900 45.455 0.00 0.00 33.78 2.74
74 75 3.708631 ACTGAATCACTAGCAGGCAGTAT 59.291 43.478 0.00 0.00 33.78 2.12
75 76 4.056740 CTGAATCACTAGCAGGCAGTATG 58.943 47.826 0.00 0.00 40.87 2.39
76 77 3.452264 TGAATCACTAGCAGGCAGTATGT 59.548 43.478 0.00 0.00 39.31 2.29
77 78 3.742433 ATCACTAGCAGGCAGTATGTC 57.258 47.619 0.00 0.00 44.67 3.06
88 89 2.618709 GGCAGTATGTCTATTGGTTGGC 59.381 50.000 0.00 0.00 38.03 4.52
89 90 3.545703 GCAGTATGTCTATTGGTTGGCT 58.454 45.455 0.00 0.00 39.31 4.75
90 91 4.444306 GGCAGTATGTCTATTGGTTGGCTA 60.444 45.833 0.00 0.00 38.03 3.93
91 92 5.123227 GCAGTATGTCTATTGGTTGGCTAA 58.877 41.667 0.00 0.00 39.31 3.09
92 93 5.588648 GCAGTATGTCTATTGGTTGGCTAAA 59.411 40.000 0.00 0.00 39.31 1.85
93 94 6.458342 GCAGTATGTCTATTGGTTGGCTAAAC 60.458 42.308 0.00 0.00 39.31 2.01
94 95 5.815740 AGTATGTCTATTGGTTGGCTAAACG 59.184 40.000 0.00 0.00 39.91 3.60
95 96 2.745281 TGTCTATTGGTTGGCTAAACGC 59.255 45.455 0.00 0.00 39.91 4.84
96 97 2.004017 TCTATTGGTTGGCTAAACGCG 58.996 47.619 3.53 3.53 39.91 6.01
97 98 2.004017 CTATTGGTTGGCTAAACGCGA 58.996 47.619 15.93 0.00 39.91 5.87
98 99 1.240256 ATTGGTTGGCTAAACGCGAA 58.760 45.000 15.93 0.00 39.91 4.70
99 100 1.022735 TTGGTTGGCTAAACGCGAAA 58.977 45.000 15.93 0.00 38.10 3.46
100 101 1.022735 TGGTTGGCTAAACGCGAAAA 58.977 45.000 15.93 0.00 38.10 2.29
101 102 1.268640 TGGTTGGCTAAACGCGAAAAC 60.269 47.619 15.93 5.96 38.10 2.43
102 103 1.002142 GGTTGGCTAAACGCGAAAACT 60.002 47.619 15.93 0.00 38.10 2.66
103 104 2.223845 GGTTGGCTAAACGCGAAAACTA 59.776 45.455 15.93 0.00 38.10 2.24
104 105 3.220773 GTTGGCTAAACGCGAAAACTAC 58.779 45.455 15.93 1.13 38.10 2.73
105 106 2.758009 TGGCTAAACGCGAAAACTACT 58.242 42.857 15.93 0.00 40.44 2.57
106 107 2.477375 TGGCTAAACGCGAAAACTACTG 59.523 45.455 15.93 0.00 40.44 2.74
107 108 2.477754 GGCTAAACGCGAAAACTACTGT 59.522 45.455 15.93 0.00 40.44 3.55
108 109 3.466836 GCTAAACGCGAAAACTACTGTG 58.533 45.455 15.93 0.00 0.00 3.66
109 110 3.182972 GCTAAACGCGAAAACTACTGTGA 59.817 43.478 15.93 0.00 0.00 3.58
110 111 3.854286 AAACGCGAAAACTACTGTGAG 57.146 42.857 15.93 0.00 0.00 3.51
111 112 1.779569 ACGCGAAAACTACTGTGAGG 58.220 50.000 15.93 0.00 0.00 3.86
112 113 1.068127 ACGCGAAAACTACTGTGAGGT 59.932 47.619 15.93 0.00 0.00 3.85
113 114 2.132762 CGCGAAAACTACTGTGAGGTT 58.867 47.619 0.00 0.00 0.00 3.50
114 115 2.096909 CGCGAAAACTACTGTGAGGTTG 60.097 50.000 0.00 0.00 0.00 3.77
115 116 2.349532 GCGAAAACTACTGTGAGGTTGC 60.350 50.000 0.00 0.00 0.00 4.17
116 117 2.096909 CGAAAACTACTGTGAGGTTGCG 60.097 50.000 0.00 0.00 38.78 4.85
117 118 2.902705 AAACTACTGTGAGGTTGCGA 57.097 45.000 0.00 0.00 0.00 5.10
118 119 2.440539 AACTACTGTGAGGTTGCGAG 57.559 50.000 0.00 0.00 0.00 5.03
119 120 1.329256 ACTACTGTGAGGTTGCGAGT 58.671 50.000 0.00 0.00 0.00 4.18
120 121 1.687123 ACTACTGTGAGGTTGCGAGTT 59.313 47.619 0.00 0.00 0.00 3.01
121 122 2.288273 ACTACTGTGAGGTTGCGAGTTC 60.288 50.000 0.00 0.00 0.00 3.01
122 123 0.597637 ACTGTGAGGTTGCGAGTTCG 60.598 55.000 0.00 0.00 43.27 3.95
123 124 1.284982 CTGTGAGGTTGCGAGTTCGG 61.285 60.000 3.50 0.00 40.23 4.30
124 125 1.300697 GTGAGGTTGCGAGTTCGGT 60.301 57.895 3.50 0.00 40.23 4.69
125 126 0.878961 GTGAGGTTGCGAGTTCGGTT 60.879 55.000 3.50 0.00 40.23 4.44
126 127 0.599204 TGAGGTTGCGAGTTCGGTTC 60.599 55.000 3.50 0.00 40.23 3.62
127 128 0.599204 GAGGTTGCGAGTTCGGTTCA 60.599 55.000 3.50 0.00 40.23 3.18
128 129 0.878961 AGGTTGCGAGTTCGGTTCAC 60.879 55.000 3.50 0.00 40.23 3.18
129 130 0.878961 GGTTGCGAGTTCGGTTCACT 60.879 55.000 3.50 0.00 40.23 3.41
130 131 0.232303 GTTGCGAGTTCGGTTCACTG 59.768 55.000 3.50 0.00 40.23 3.66
131 132 0.103390 TTGCGAGTTCGGTTCACTGA 59.897 50.000 3.50 0.00 40.23 3.41
132 133 0.318699 TGCGAGTTCGGTTCACTGAG 60.319 55.000 3.50 0.00 40.23 3.35
133 134 1.009389 GCGAGTTCGGTTCACTGAGG 61.009 60.000 3.50 0.00 40.23 3.86
134 135 0.388649 CGAGTTCGGTTCACTGAGGG 60.389 60.000 0.00 0.00 35.37 4.30
135 136 0.670854 GAGTTCGGTTCACTGAGGGC 60.671 60.000 0.00 0.00 32.05 5.19
136 137 1.671379 GTTCGGTTCACTGAGGGCC 60.671 63.158 0.00 0.00 32.05 5.80
137 138 2.144078 TTCGGTTCACTGAGGGCCA 61.144 57.895 6.18 0.00 32.05 5.36
138 139 2.358737 CGGTTCACTGAGGGCCAC 60.359 66.667 6.18 0.00 0.00 5.01
139 140 2.034221 GGTTCACTGAGGGCCACC 59.966 66.667 6.18 0.00 0.00 4.61
150 151 3.987594 GGGCCACCTTTTGAGATCT 57.012 52.632 4.39 0.00 0.00 2.75
151 152 2.222227 GGGCCACCTTTTGAGATCTT 57.778 50.000 4.39 0.00 0.00 2.40
152 153 2.529632 GGGCCACCTTTTGAGATCTTT 58.470 47.619 4.39 0.00 0.00 2.52
153 154 2.899900 GGGCCACCTTTTGAGATCTTTT 59.100 45.455 4.39 0.00 0.00 2.27
154 155 3.324846 GGGCCACCTTTTGAGATCTTTTT 59.675 43.478 4.39 0.00 0.00 1.94
155 156 4.309933 GGCCACCTTTTGAGATCTTTTTG 58.690 43.478 0.00 0.00 0.00 2.44
156 157 3.742882 GCCACCTTTTGAGATCTTTTTGC 59.257 43.478 0.00 0.00 0.00 3.68
157 158 4.740334 GCCACCTTTTGAGATCTTTTTGCA 60.740 41.667 0.00 0.00 0.00 4.08
158 159 4.746611 CCACCTTTTGAGATCTTTTTGCAC 59.253 41.667 0.00 0.00 0.00 4.57
159 160 5.350633 CACCTTTTGAGATCTTTTTGCACA 58.649 37.500 0.00 0.00 0.00 4.57
160 161 5.811613 CACCTTTTGAGATCTTTTTGCACAA 59.188 36.000 0.00 0.00 0.00 3.33
161 162 6.480981 CACCTTTTGAGATCTTTTTGCACAAT 59.519 34.615 0.00 0.00 0.00 2.71
162 163 7.652909 CACCTTTTGAGATCTTTTTGCACAATA 59.347 33.333 0.00 0.00 0.00 1.90
163 164 8.203485 ACCTTTTGAGATCTTTTTGCACAATAA 58.797 29.630 0.00 0.00 0.00 1.40
164 165 9.211485 CCTTTTGAGATCTTTTTGCACAATAAT 57.789 29.630 0.00 0.00 0.00 1.28
180 181 9.340695 TGCACAATAATATATATTTTTCTGCGC 57.659 29.630 21.80 0.00 34.17 6.09
181 182 9.340695 GCACAATAATATATATTTTTCTGCGCA 57.659 29.630 10.98 10.98 26.91 6.09
183 184 9.541724 ACAATAATATATATTTTTCTGCGCACG 57.458 29.630 5.66 2.75 0.00 5.34
184 185 8.515473 CAATAATATATATTTTTCTGCGCACGC 58.485 33.333 5.66 8.33 42.35 5.34
185 186 2.361094 TATATTTTTCTGCGCACGCG 57.639 45.000 5.66 3.53 45.51 6.01
186 187 0.446222 ATATTTTTCTGCGCACGCGT 59.554 45.000 5.66 5.58 45.51 6.01
187 188 0.236187 TATTTTTCTGCGCACGCGTT 59.764 45.000 10.22 0.00 45.51 4.84
188 189 0.593773 ATTTTTCTGCGCACGCGTTT 60.594 45.000 10.22 0.00 45.51 3.60
189 190 1.467556 TTTTTCTGCGCACGCGTTTG 61.468 50.000 10.22 5.97 45.51 2.93
190 191 2.585170 TTTTCTGCGCACGCGTTTGT 62.585 50.000 10.22 0.00 45.51 2.83
191 192 3.781926 TTCTGCGCACGCGTTTGTG 62.782 57.895 10.22 7.59 45.51 3.33
245 246 4.570663 CCTTCCGCGGCGAGTAGG 62.571 72.222 25.92 21.09 0.00 3.18
255 256 3.905678 CGAGTAGGCGCTCCCCTG 61.906 72.222 7.64 0.00 36.41 4.45
256 257 4.228567 GAGTAGGCGCTCCCCTGC 62.229 72.222 7.64 0.00 37.81 4.85
258 259 4.096003 GTAGGCGCTCCCCTGCAA 62.096 66.667 7.64 0.00 37.52 4.08
259 260 4.096003 TAGGCGCTCCCCTGCAAC 62.096 66.667 7.64 0.00 36.41 4.17
265 266 4.641645 CTCCCCTGCAACACGGCA 62.642 66.667 0.00 0.00 42.53 5.69
266 267 4.196778 TCCCCTGCAACACGGCAA 62.197 61.111 0.00 0.00 44.40 4.52
267 268 3.977244 CCCCTGCAACACGGCAAC 61.977 66.667 0.00 0.00 44.40 4.17
268 269 2.906897 CCCTGCAACACGGCAACT 60.907 61.111 0.00 0.00 44.40 3.16
269 270 2.639286 CCTGCAACACGGCAACTC 59.361 61.111 0.00 0.00 44.40 3.01
270 271 2.639286 CTGCAACACGGCAACTCC 59.361 61.111 0.00 0.00 44.40 3.85
271 272 2.904866 TGCAACACGGCAACTCCC 60.905 61.111 0.00 0.00 41.65 4.30
272 273 2.904866 GCAACACGGCAACTCCCA 60.905 61.111 0.00 0.00 0.00 4.37
273 274 3.030652 CAACACGGCAACTCCCAC 58.969 61.111 0.00 0.00 0.00 4.61
274 275 1.525995 CAACACGGCAACTCCCACT 60.526 57.895 0.00 0.00 0.00 4.00
275 276 1.101049 CAACACGGCAACTCCCACTT 61.101 55.000 0.00 0.00 0.00 3.16
276 277 1.101049 AACACGGCAACTCCCACTTG 61.101 55.000 0.00 0.00 0.00 3.16
277 278 1.525995 CACGGCAACTCCCACTTGT 60.526 57.895 0.00 0.00 0.00 3.16
278 279 1.525995 ACGGCAACTCCCACTTGTG 60.526 57.895 0.00 0.00 0.00 3.33
279 280 2.908073 CGGCAACTCCCACTTGTGC 61.908 63.158 0.00 0.00 0.00 4.57
280 281 2.639286 GCAACTCCCACTTGTGCG 59.361 61.111 0.00 0.00 0.00 5.34
281 282 2.186826 GCAACTCCCACTTGTGCGT 61.187 57.895 0.00 0.00 0.00 5.24
282 283 1.941812 CAACTCCCACTTGTGCGTC 59.058 57.895 0.00 0.00 0.00 5.19
283 284 0.532862 CAACTCCCACTTGTGCGTCT 60.533 55.000 0.00 0.00 0.00 4.18
284 285 1.045407 AACTCCCACTTGTGCGTCTA 58.955 50.000 0.00 0.00 0.00 2.59
285 286 1.045407 ACTCCCACTTGTGCGTCTAA 58.955 50.000 0.00 0.00 0.00 2.10
286 287 1.414919 ACTCCCACTTGTGCGTCTAAA 59.585 47.619 0.00 0.00 0.00 1.85
287 288 2.038557 ACTCCCACTTGTGCGTCTAAAT 59.961 45.455 0.00 0.00 0.00 1.40
288 289 3.074412 CTCCCACTTGTGCGTCTAAATT 58.926 45.455 0.00 0.00 0.00 1.82
289 290 2.811431 TCCCACTTGTGCGTCTAAATTG 59.189 45.455 0.00 0.00 0.00 2.32
290 291 2.095263 CCCACTTGTGCGTCTAAATTGG 60.095 50.000 0.00 0.00 0.00 3.16
291 292 2.552315 CCACTTGTGCGTCTAAATTGGT 59.448 45.455 0.00 0.00 0.00 3.67
292 293 3.749088 CCACTTGTGCGTCTAAATTGGTA 59.251 43.478 0.00 0.00 0.00 3.25
293 294 4.142902 CCACTTGTGCGTCTAAATTGGTAG 60.143 45.833 0.00 0.00 0.00 3.18
294 295 3.435671 ACTTGTGCGTCTAAATTGGTAGC 59.564 43.478 0.00 0.00 0.00 3.58
295 296 1.996898 TGTGCGTCTAAATTGGTAGCG 59.003 47.619 0.00 0.00 0.00 4.26
296 297 1.003851 TGCGTCTAAATTGGTAGCGC 58.996 50.000 0.00 0.00 42.11 5.92
297 298 1.003851 GCGTCTAAATTGGTAGCGCA 58.996 50.000 11.47 0.00 41.75 6.09
298 299 1.267383 GCGTCTAAATTGGTAGCGCAC 60.267 52.381 11.47 5.73 41.75 5.34
299 300 1.006391 CGTCTAAATTGGTAGCGCACG 60.006 52.381 11.47 1.47 0.00 5.34
300 301 1.326548 GTCTAAATTGGTAGCGCACGG 59.673 52.381 11.47 0.00 0.00 4.94
301 302 1.066716 TCTAAATTGGTAGCGCACGGT 60.067 47.619 11.47 0.00 0.00 4.83
302 303 2.166050 TCTAAATTGGTAGCGCACGGTA 59.834 45.455 11.47 0.00 0.00 4.02
303 304 2.032680 AAATTGGTAGCGCACGGTAT 57.967 45.000 11.47 0.00 0.00 2.73
304 305 2.894763 AATTGGTAGCGCACGGTATA 57.105 45.000 11.47 0.00 0.00 1.47
305 306 2.894763 ATTGGTAGCGCACGGTATAA 57.105 45.000 11.47 5.08 0.00 0.98
306 307 2.212869 TTGGTAGCGCACGGTATAAG 57.787 50.000 11.47 0.00 0.00 1.73
307 308 1.391577 TGGTAGCGCACGGTATAAGA 58.608 50.000 11.47 0.00 0.00 2.10
308 309 1.750206 TGGTAGCGCACGGTATAAGAA 59.250 47.619 11.47 0.00 0.00 2.52
309 310 2.122564 GGTAGCGCACGGTATAAGAAC 58.877 52.381 11.47 0.00 0.00 3.01
310 311 2.480073 GGTAGCGCACGGTATAAGAACA 60.480 50.000 11.47 0.00 0.00 3.18
311 312 2.373540 AGCGCACGGTATAAGAACAA 57.626 45.000 11.47 0.00 0.00 2.83
312 313 2.901249 AGCGCACGGTATAAGAACAAT 58.099 42.857 11.47 0.00 0.00 2.71
313 314 4.049546 AGCGCACGGTATAAGAACAATA 57.950 40.909 11.47 0.00 0.00 1.90
314 315 4.435425 AGCGCACGGTATAAGAACAATAA 58.565 39.130 11.47 0.00 0.00 1.40
315 316 4.506654 AGCGCACGGTATAAGAACAATAAG 59.493 41.667 11.47 0.00 0.00 1.73
316 317 4.758561 CGCACGGTATAAGAACAATAAGC 58.241 43.478 0.00 0.00 0.00 3.09
317 318 4.318546 CGCACGGTATAAGAACAATAAGCC 60.319 45.833 0.00 0.00 0.00 4.35
318 319 4.573201 GCACGGTATAAGAACAATAAGCCA 59.427 41.667 0.00 0.00 0.00 4.75
319 320 5.238650 GCACGGTATAAGAACAATAAGCCAT 59.761 40.000 0.00 0.00 0.00 4.40
320 321 6.658831 CACGGTATAAGAACAATAAGCCATG 58.341 40.000 0.00 0.00 0.00 3.66
321 322 6.481976 CACGGTATAAGAACAATAAGCCATGA 59.518 38.462 0.00 0.00 0.00 3.07
322 323 7.173218 CACGGTATAAGAACAATAAGCCATGAT 59.827 37.037 0.00 0.00 0.00 2.45
323 324 8.372459 ACGGTATAAGAACAATAAGCCATGATA 58.628 33.333 0.00 0.00 0.00 2.15
324 325 8.873830 CGGTATAAGAACAATAAGCCATGATAG 58.126 37.037 0.00 0.00 0.00 2.08
325 326 9.944376 GGTATAAGAACAATAAGCCATGATAGA 57.056 33.333 0.00 0.00 0.00 1.98
374 375 9.763979 GAATGCGATTTATTTTAATAAAGTGCG 57.236 29.630 18.78 17.17 42.29 5.34
375 376 9.509855 AATGCGATTTATTTTAATAAAGTGCGA 57.490 25.926 19.87 13.63 42.29 5.10
376 377 8.897457 TGCGATTTATTTTAATAAAGTGCGAA 57.103 26.923 19.87 13.05 42.29 4.70
377 378 9.509855 TGCGATTTATTTTAATAAAGTGCGAAT 57.490 25.926 19.87 4.45 42.29 3.34
390 391 6.974677 AAAGTGCGAATATATTTTGATGCG 57.025 33.333 0.00 0.00 0.00 4.73
391 392 5.922739 AGTGCGAATATATTTTGATGCGA 57.077 34.783 0.00 0.00 0.00 5.10
392 393 6.299023 AGTGCGAATATATTTTGATGCGAA 57.701 33.333 0.00 0.00 0.00 4.70
393 394 6.136071 AGTGCGAATATATTTTGATGCGAAC 58.864 36.000 0.00 2.58 0.00 3.95
394 395 5.056807 GTGCGAATATATTTTGATGCGAACG 59.943 40.000 0.00 0.00 0.00 3.95
395 396 5.137403 GCGAATATATTTTGATGCGAACGT 58.863 37.500 0.00 0.00 0.00 3.99
396 397 5.619607 GCGAATATATTTTGATGCGAACGTT 59.380 36.000 0.00 0.00 0.00 3.99
397 398 6.140108 GCGAATATATTTTGATGCGAACGTTT 59.860 34.615 0.46 0.00 0.00 3.60
398 399 7.305190 GCGAATATATTTTGATGCGAACGTTTT 60.305 33.333 0.46 0.00 0.00 2.43
399 400 8.520258 CGAATATATTTTGATGCGAACGTTTTT 58.480 29.630 0.46 0.00 0.00 1.94
452 453 8.703604 TCAAACATTTTTGAAATTACGAACCA 57.296 26.923 4.55 0.00 46.59 3.67
453 454 9.151471 TCAAACATTTTTGAAATTACGAACCAA 57.849 25.926 4.55 0.00 46.59 3.67
454 455 9.928236 CAAACATTTTTGAAATTACGAACCAAT 57.072 25.926 0.00 0.00 44.38 3.16
467 468 8.911247 ATTACGAACCAATTATTTGAAGAAGC 57.089 30.769 0.00 0.00 34.60 3.86
468 469 6.325919 ACGAACCAATTATTTGAAGAAGCA 57.674 33.333 0.00 0.00 34.60 3.91
469 470 6.744112 ACGAACCAATTATTTGAAGAAGCAA 58.256 32.000 0.00 0.00 34.60 3.91
470 471 7.206687 ACGAACCAATTATTTGAAGAAGCAAA 58.793 30.769 0.00 0.00 41.49 3.68
471 472 7.872483 ACGAACCAATTATTTGAAGAAGCAAAT 59.128 29.630 0.00 0.00 46.79 2.32
472 473 9.352784 CGAACCAATTATTTGAAGAAGCAAATA 57.647 29.630 0.00 0.00 44.29 1.40
556 557 9.934190 AATTTATGAAACAATTTTCTGCAACAC 57.066 25.926 0.00 0.00 41.64 3.32
557 558 5.640218 ATGAAACAATTTTCTGCAACACG 57.360 34.783 0.00 0.00 41.64 4.49
558 559 3.862267 TGAAACAATTTTCTGCAACACGG 59.138 39.130 0.00 0.00 41.64 4.94
559 560 1.851658 ACAATTTTCTGCAACACGGC 58.148 45.000 0.00 0.00 0.00 5.68
560 561 1.135915 ACAATTTTCTGCAACACGGCA 59.864 42.857 0.00 0.00 42.53 5.69
561 562 2.200067 CAATTTTCTGCAACACGGCAA 58.800 42.857 0.00 0.00 44.40 4.52
562 563 1.851658 ATTTTCTGCAACACGGCAAC 58.148 45.000 0.00 0.00 44.40 4.17
563 564 0.814457 TTTTCTGCAACACGGCAACT 59.186 45.000 0.00 0.00 44.40 3.16
564 565 0.380378 TTTCTGCAACACGGCAACTC 59.620 50.000 0.00 0.00 44.40 3.01
565 566 1.444119 TTCTGCAACACGGCAACTCC 61.444 55.000 0.00 0.00 44.40 3.85
566 567 2.904866 TGCAACACGGCAACTCCC 60.905 61.111 0.00 0.00 41.65 4.30
567 568 2.904866 GCAACACGGCAACTCCCA 60.905 61.111 0.00 0.00 0.00 4.37
568 569 3.030652 CAACACGGCAACTCCCAC 58.969 61.111 0.00 0.00 0.00 4.61
569 570 1.525995 CAACACGGCAACTCCCACT 60.526 57.895 0.00 0.00 0.00 4.00
570 571 1.101049 CAACACGGCAACTCCCACTT 61.101 55.000 0.00 0.00 0.00 3.16
571 572 1.101049 AACACGGCAACTCCCACTTG 61.101 55.000 0.00 0.00 0.00 3.16
572 573 1.525995 CACGGCAACTCCCACTTGT 60.526 57.895 0.00 0.00 0.00 3.16
573 574 1.525995 ACGGCAACTCCCACTTGTG 60.526 57.895 0.00 0.00 0.00 3.33
574 575 1.227823 CGGCAACTCCCACTTGTGA 60.228 57.895 1.89 0.00 0.00 3.58
575 576 0.606401 CGGCAACTCCCACTTGTGAT 60.606 55.000 1.89 0.00 0.00 3.06
576 577 1.338674 CGGCAACTCCCACTTGTGATA 60.339 52.381 1.89 0.00 0.00 2.15
577 578 2.359900 GGCAACTCCCACTTGTGATAG 58.640 52.381 1.89 2.16 0.00 2.08
578 579 2.290323 GGCAACTCCCACTTGTGATAGT 60.290 50.000 1.89 2.75 0.00 2.12
579 580 3.003480 GCAACTCCCACTTGTGATAGTC 58.997 50.000 1.89 0.00 0.00 2.59
580 581 3.557054 GCAACTCCCACTTGTGATAGTCA 60.557 47.826 1.89 0.00 0.00 3.41
595 596 7.681125 GTGATAGTCACGTCTAAATTGGTAG 57.319 40.000 0.00 0.00 37.67 3.18
596 597 6.198591 GTGATAGTCACGTCTAAATTGGTAGC 59.801 42.308 0.00 0.00 37.67 3.58
597 598 3.508762 AGTCACGTCTAAATTGGTAGCG 58.491 45.455 0.00 0.00 0.00 4.26
598 599 2.028883 GTCACGTCTAAATTGGTAGCGC 59.971 50.000 0.00 0.00 0.00 5.92
599 600 1.996898 CACGTCTAAATTGGTAGCGCA 59.003 47.619 11.47 0.00 0.00 6.09
600 601 1.997606 ACGTCTAAATTGGTAGCGCAC 59.002 47.619 11.47 5.73 0.00 5.34
601 602 1.006391 CGTCTAAATTGGTAGCGCACG 60.006 52.381 11.47 1.47 0.00 5.34
602 603 1.326548 GTCTAAATTGGTAGCGCACGG 59.673 52.381 11.47 0.00 0.00 4.94
603 604 1.066716 TCTAAATTGGTAGCGCACGGT 60.067 47.619 11.47 0.00 0.00 4.83
604 605 2.166050 TCTAAATTGGTAGCGCACGGTA 59.834 45.455 11.47 0.00 0.00 4.02
605 606 2.032680 AAATTGGTAGCGCACGGTAT 57.967 45.000 11.47 0.00 0.00 2.73
606 607 2.894763 AATTGGTAGCGCACGGTATA 57.105 45.000 11.47 0.00 0.00 1.47
607 608 2.894763 ATTGGTAGCGCACGGTATAA 57.105 45.000 11.47 5.08 0.00 0.98
608 609 2.212869 TTGGTAGCGCACGGTATAAG 57.787 50.000 11.47 0.00 0.00 1.73
609 610 1.391577 TGGTAGCGCACGGTATAAGA 58.608 50.000 11.47 0.00 0.00 2.10
610 611 1.750206 TGGTAGCGCACGGTATAAGAA 59.250 47.619 11.47 0.00 0.00 2.52
611 612 2.122564 GGTAGCGCACGGTATAAGAAC 58.877 52.381 11.47 0.00 0.00 3.01
612 613 2.480073 GGTAGCGCACGGTATAAGAACA 60.480 50.000 11.47 0.00 0.00 3.18
613 614 2.373540 AGCGCACGGTATAAGAACAA 57.626 45.000 11.47 0.00 0.00 2.83
614 615 2.901249 AGCGCACGGTATAAGAACAAT 58.099 42.857 11.47 0.00 0.00 2.71
615 616 4.049546 AGCGCACGGTATAAGAACAATA 57.950 40.909 11.47 0.00 0.00 1.90
616 617 4.435425 AGCGCACGGTATAAGAACAATAA 58.565 39.130 11.47 0.00 0.00 1.40
617 618 4.506654 AGCGCACGGTATAAGAACAATAAG 59.493 41.667 11.47 0.00 0.00 1.73
618 619 4.758561 CGCACGGTATAAGAACAATAAGC 58.241 43.478 0.00 0.00 0.00 3.09
619 620 4.318546 CGCACGGTATAAGAACAATAAGCC 60.319 45.833 0.00 0.00 0.00 4.35
620 621 4.573201 GCACGGTATAAGAACAATAAGCCA 59.427 41.667 0.00 0.00 0.00 4.75
621 622 5.238650 GCACGGTATAAGAACAATAAGCCAT 59.761 40.000 0.00 0.00 0.00 4.40
622 623 6.658831 CACGGTATAAGAACAATAAGCCATG 58.341 40.000 0.00 0.00 0.00 3.66
623 624 6.481976 CACGGTATAAGAACAATAAGCCATGA 59.518 38.462 0.00 0.00 0.00 3.07
624 625 7.173218 CACGGTATAAGAACAATAAGCCATGAT 59.827 37.037 0.00 0.00 0.00 2.45
625 626 8.372459 ACGGTATAAGAACAATAAGCCATGATA 58.628 33.333 0.00 0.00 0.00 2.15
626 627 8.873830 CGGTATAAGAACAATAAGCCATGATAG 58.126 37.037 0.00 0.00 0.00 2.08
627 628 9.944376 GGTATAAGAACAATAAGCCATGATAGA 57.056 33.333 0.00 0.00 0.00 1.98
695 698 7.684062 AGTGCAAATATATTTTGATGCGAAC 57.316 32.000 8.01 5.39 0.00 3.95
773 777 7.872483 ACGAACCAATTATTTGAAGAAGCAAAT 59.128 29.630 0.00 0.00 46.79 2.32
1056 1070 3.357203 TGAGAAGCCTCGACTACTTGAT 58.643 45.455 0.00 0.00 42.33 2.57
1142 1156 1.750399 GTGGGCTGGATTGCATCGT 60.750 57.895 0.00 0.00 34.04 3.73
1188 1210 0.818040 GACCCAACTGCGGAAAGTGT 60.818 55.000 0.00 0.00 0.00 3.55
1190 1212 1.134037 ACCCAACTGCGGAAAGTGTTA 60.134 47.619 0.00 0.00 0.00 2.41
1191 1213 2.159382 CCCAACTGCGGAAAGTGTTAT 58.841 47.619 0.00 0.00 0.00 1.89
1504 1534 3.458163 CGCGAGGTTGGGGAGCTA 61.458 66.667 0.00 0.00 35.91 3.32
1606 1636 3.353836 GCCAACGAGGAGCGCAAA 61.354 61.111 11.47 0.00 46.04 3.68
1737 1767 3.378112 TCCCATCGTTTCATCTTTGCATC 59.622 43.478 0.00 0.00 0.00 3.91
1779 1809 3.242739 CCTCATCCATTTCGGCTTTAACG 60.243 47.826 0.00 0.00 33.14 3.18
1781 1811 1.455248 TCCATTTCGGCTTTAACGGG 58.545 50.000 0.00 0.00 33.14 5.28
1787 1817 2.822701 GGCTTTAACGGGGAGCGG 60.823 66.667 0.00 0.00 37.29 5.52
1835 1865 7.012421 CCTTAACTTGCCATATGAACCTCTTAC 59.988 40.741 3.65 0.00 0.00 2.34
1842 1872 6.663093 TGCCATATGAACCTCTTACAACAAAT 59.337 34.615 3.65 0.00 0.00 2.32
1849 1879 5.959618 ACCTCTTACAACAAATAAGTGGC 57.040 39.130 11.08 0.00 42.91 5.01
2234 2438 5.067283 AGTGTACTGTGAAAACAATCAACCC 59.933 40.000 0.00 0.00 0.00 4.11
2281 2488 9.742144 TTTGGCATCAAAATACTACCTAAGTTA 57.258 29.630 0.00 0.00 39.64 2.24
2413 2624 4.083271 CCTCTGCATCGACGATGTATCTAA 60.083 45.833 32.08 16.18 41.60 2.10
2422 2633 3.639538 ACGATGTATCTAATCCACGCAC 58.360 45.455 0.00 0.00 0.00 5.34
2447 2658 5.649395 TGAGATCAGTGAAAAATTAGGCCTG 59.351 40.000 17.99 0.00 0.00 4.85
2456 2667 1.596496 AATTAGGCCTGCACCTAGGT 58.404 50.000 17.99 9.21 43.18 3.08
2538 2760 4.180946 CGAGGTCCTGCGGAGTCG 62.181 72.222 2.36 1.36 34.49 4.18
2585 2807 2.055042 GGCAGGAGAAGAGAGGCGA 61.055 63.158 0.00 0.00 0.00 5.54
2607 2829 4.802051 GGAGGAGCCGCAATGCCA 62.802 66.667 0.00 0.00 0.00 4.92
2730 2952 2.100252 CCTTATTGGGCTGCATTGTCAG 59.900 50.000 0.50 4.38 37.15 3.51
2733 2955 1.250328 TTGGGCTGCATTGTCAGAAG 58.750 50.000 0.50 0.00 36.19 2.85
2739 2961 0.322816 TGCATTGTCAGAAGGAGGCC 60.323 55.000 0.00 0.00 0.00 5.19
2752 2974 1.513622 GAGGCCGAGTCAGAGGAAC 59.486 63.158 0.00 0.00 0.00 3.62
2837 3059 4.214119 TGAGTGCTGTTTAAGTGCTCATTC 59.786 41.667 0.00 0.00 35.41 2.67
2840 3062 3.888323 TGCTGTTTAAGTGCTCATTCCAA 59.112 39.130 0.00 0.00 0.00 3.53
2861 3083 2.741092 GTGGGGACAGAACGCTCA 59.259 61.111 0.00 0.00 44.46 4.26
2879 3101 3.864160 GCTCACTCAGCTCTTAGCACTTT 60.864 47.826 1.22 0.00 45.56 2.66
2945 3168 7.664552 AATGAAAGCTCAATATTGATCCCAA 57.335 32.000 18.26 4.34 36.46 4.12
2979 3202 6.093219 GGCTGTATGATGTATTCTAGCAATGG 59.907 42.308 0.00 0.00 0.00 3.16
3007 3230 7.602517 ATGAGATCCTTCAAGTAAAGAAACG 57.397 36.000 0.00 0.00 0.00 3.60
3038 3261 0.168128 GTTGTGGAAGCCGTATGCAC 59.832 55.000 0.00 0.00 44.83 4.57
3060 3283 9.772973 TGCACTATTACCATAGATTAAAATCGT 57.227 29.630 0.00 0.00 40.35 3.73
3083 3306 3.134458 GGCGAAAAGACCTCTATCATGG 58.866 50.000 0.00 0.00 0.00 3.66
3084 3307 3.432326 GGCGAAAAGACCTCTATCATGGT 60.432 47.826 0.00 0.00 39.60 3.55
3130 3353 1.402852 GCGATTTGTTTCCTTCCCAGC 60.403 52.381 0.00 0.00 0.00 4.85
3135 3358 0.400213 TGTTTCCTTCCCAGCATCGT 59.600 50.000 0.00 0.00 0.00 3.73
3167 3397 1.300931 GCAATAGCCGGAGATCGCA 60.301 57.895 5.05 0.00 37.59 5.10
3344 3575 7.631717 AGGAAAGAATAGCAAACTTATGGAC 57.368 36.000 0.00 0.00 0.00 4.02
3347 3578 9.174166 GGAAAGAATAGCAAACTTATGGACTTA 57.826 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.387878 AGCAGCGCTACATATCTCGC 60.388 55.000 10.99 5.94 46.95 5.03
4 5 2.902065 TAGCAGCGCTACATATCTCG 57.098 50.000 10.99 0.00 40.44 4.04
21 22 7.445836 GCGATATTATTTAAGAACCAGCGTAG 58.554 38.462 0.00 0.00 0.00 3.51
22 23 6.088483 CGCGATATTATTTAAGAACCAGCGTA 59.912 38.462 0.00 0.00 37.14 4.42
23 24 5.107607 CGCGATATTATTTAAGAACCAGCGT 60.108 40.000 0.00 0.00 37.14 5.07
24 25 5.305812 CGCGATATTATTTAAGAACCAGCG 58.694 41.667 0.00 0.00 35.64 5.18
25 26 5.080068 GCGCGATATTATTTAAGAACCAGC 58.920 41.667 12.10 0.00 0.00 4.85
26 27 6.145534 TCAGCGCGATATTATTTAAGAACCAG 59.854 38.462 12.10 0.00 0.00 4.00
27 28 5.986741 TCAGCGCGATATTATTTAAGAACCA 59.013 36.000 12.10 0.00 0.00 3.67
28 29 6.462073 TCAGCGCGATATTATTTAAGAACC 57.538 37.500 12.10 0.00 0.00 3.62
29 30 7.527516 CAGTTCAGCGCGATATTATTTAAGAAC 59.472 37.037 12.10 10.40 0.00 3.01
30 31 7.436970 TCAGTTCAGCGCGATATTATTTAAGAA 59.563 33.333 12.10 0.00 0.00 2.52
31 32 6.921307 TCAGTTCAGCGCGATATTATTTAAGA 59.079 34.615 12.10 0.00 0.00 2.10
32 33 7.105494 TCAGTTCAGCGCGATATTATTTAAG 57.895 36.000 12.10 0.00 0.00 1.85
33 34 7.471657 TTCAGTTCAGCGCGATATTATTTAA 57.528 32.000 12.10 0.00 0.00 1.52
34 35 7.383843 TGATTCAGTTCAGCGCGATATTATTTA 59.616 33.333 12.10 0.00 0.00 1.40
35 36 5.984233 TTCAGTTCAGCGCGATATTATTT 57.016 34.783 12.10 0.00 0.00 1.40
36 37 5.696270 TGATTCAGTTCAGCGCGATATTATT 59.304 36.000 12.10 0.00 0.00 1.40
37 38 5.119279 GTGATTCAGTTCAGCGCGATATTAT 59.881 40.000 12.10 0.00 0.00 1.28
38 39 4.444388 GTGATTCAGTTCAGCGCGATATTA 59.556 41.667 12.10 0.00 0.00 0.98
39 40 3.246226 GTGATTCAGTTCAGCGCGATATT 59.754 43.478 12.10 0.00 0.00 1.28
40 41 2.797156 GTGATTCAGTTCAGCGCGATAT 59.203 45.455 12.10 0.00 0.00 1.63
41 42 2.159240 AGTGATTCAGTTCAGCGCGATA 60.159 45.455 12.10 0.00 0.00 2.92
42 43 1.002366 GTGATTCAGTTCAGCGCGAT 58.998 50.000 12.10 0.00 0.00 4.58
43 44 0.038251 AGTGATTCAGTTCAGCGCGA 60.038 50.000 12.10 0.00 0.00 5.87
44 45 1.585668 CTAGTGATTCAGTTCAGCGCG 59.414 52.381 0.00 0.00 0.00 6.86
45 46 1.325943 GCTAGTGATTCAGTTCAGCGC 59.674 52.381 0.00 0.00 0.00 5.92
46 47 2.602211 CTGCTAGTGATTCAGTTCAGCG 59.398 50.000 10.30 3.98 0.00 5.18
47 48 2.935201 CCTGCTAGTGATTCAGTTCAGC 59.065 50.000 8.67 8.67 0.00 4.26
48 49 2.935201 GCCTGCTAGTGATTCAGTTCAG 59.065 50.000 0.00 7.65 0.00 3.02
49 50 2.302733 TGCCTGCTAGTGATTCAGTTCA 59.697 45.455 0.00 0.00 0.00 3.18
50 51 2.935201 CTGCCTGCTAGTGATTCAGTTC 59.065 50.000 0.00 0.00 0.00 3.01
51 52 2.304180 ACTGCCTGCTAGTGATTCAGTT 59.696 45.455 0.00 0.00 30.08 3.16
52 53 1.905215 ACTGCCTGCTAGTGATTCAGT 59.095 47.619 0.00 0.00 0.00 3.41
53 54 2.687700 ACTGCCTGCTAGTGATTCAG 57.312 50.000 0.00 0.00 0.00 3.02
54 55 3.452264 ACATACTGCCTGCTAGTGATTCA 59.548 43.478 0.00 0.00 0.00 2.57
55 56 4.054671 GACATACTGCCTGCTAGTGATTC 58.945 47.826 0.00 0.00 0.00 2.52
56 57 3.708631 AGACATACTGCCTGCTAGTGATT 59.291 43.478 0.00 0.00 0.00 2.57
57 58 3.303938 AGACATACTGCCTGCTAGTGAT 58.696 45.455 0.00 0.00 0.00 3.06
58 59 2.739943 AGACATACTGCCTGCTAGTGA 58.260 47.619 0.00 0.00 0.00 3.41
59 60 4.862902 ATAGACATACTGCCTGCTAGTG 57.137 45.455 0.00 0.00 0.00 2.74
60 61 4.039730 CCAATAGACATACTGCCTGCTAGT 59.960 45.833 0.00 0.00 0.00 2.57
61 62 4.039730 ACCAATAGACATACTGCCTGCTAG 59.960 45.833 0.00 0.00 0.00 3.42
62 63 3.967326 ACCAATAGACATACTGCCTGCTA 59.033 43.478 0.00 0.00 0.00 3.49
63 64 2.774234 ACCAATAGACATACTGCCTGCT 59.226 45.455 0.00 0.00 0.00 4.24
64 65 3.199880 ACCAATAGACATACTGCCTGC 57.800 47.619 0.00 0.00 0.00 4.85
65 66 3.879295 CCAACCAATAGACATACTGCCTG 59.121 47.826 0.00 0.00 0.00 4.85
66 67 3.685550 GCCAACCAATAGACATACTGCCT 60.686 47.826 0.00 0.00 0.00 4.75
67 68 2.618709 GCCAACCAATAGACATACTGCC 59.381 50.000 0.00 0.00 0.00 4.85
68 69 3.545703 AGCCAACCAATAGACATACTGC 58.454 45.455 0.00 0.00 0.00 4.40
69 70 6.238103 CGTTTAGCCAACCAATAGACATACTG 60.238 42.308 0.00 0.00 30.65 2.74
70 71 5.815740 CGTTTAGCCAACCAATAGACATACT 59.184 40.000 0.00 0.00 30.65 2.12
71 72 5.503520 GCGTTTAGCCAACCAATAGACATAC 60.504 44.000 0.00 0.00 40.81 2.39
72 73 4.573201 GCGTTTAGCCAACCAATAGACATA 59.427 41.667 0.00 0.00 40.81 2.29
73 74 3.377172 GCGTTTAGCCAACCAATAGACAT 59.623 43.478 0.00 0.00 40.81 3.06
74 75 2.745281 GCGTTTAGCCAACCAATAGACA 59.255 45.455 0.00 0.00 40.81 3.41
75 76 2.222953 CGCGTTTAGCCAACCAATAGAC 60.223 50.000 0.00 0.00 44.76 2.59
76 77 2.004017 CGCGTTTAGCCAACCAATAGA 58.996 47.619 0.00 0.00 44.76 1.98
77 78 2.004017 TCGCGTTTAGCCAACCAATAG 58.996 47.619 5.77 0.00 44.76 1.73
78 79 2.096220 TCGCGTTTAGCCAACCAATA 57.904 45.000 5.77 0.00 44.76 1.90
79 80 1.240256 TTCGCGTTTAGCCAACCAAT 58.760 45.000 5.77 0.00 44.76 3.16
80 81 1.022735 TTTCGCGTTTAGCCAACCAA 58.977 45.000 5.77 0.00 44.76 3.67
81 82 1.022735 TTTTCGCGTTTAGCCAACCA 58.977 45.000 5.77 0.00 44.76 3.67
82 83 1.002142 AGTTTTCGCGTTTAGCCAACC 60.002 47.619 5.77 0.00 44.76 3.77
83 84 2.394545 AGTTTTCGCGTTTAGCCAAC 57.605 45.000 5.77 0.11 44.76 3.77
84 85 3.059461 CAGTAGTTTTCGCGTTTAGCCAA 60.059 43.478 5.77 0.00 44.76 4.52
85 86 2.477375 CAGTAGTTTTCGCGTTTAGCCA 59.523 45.455 5.77 0.00 44.76 4.75
86 87 2.477754 ACAGTAGTTTTCGCGTTTAGCC 59.522 45.455 5.77 0.00 44.76 3.93
87 88 3.182972 TCACAGTAGTTTTCGCGTTTAGC 59.817 43.478 5.77 0.00 43.95 3.09
88 89 4.143389 CCTCACAGTAGTTTTCGCGTTTAG 60.143 45.833 5.77 0.00 0.00 1.85
89 90 3.737266 CCTCACAGTAGTTTTCGCGTTTA 59.263 43.478 5.77 0.00 0.00 2.01
90 91 2.542595 CCTCACAGTAGTTTTCGCGTTT 59.457 45.455 5.77 0.00 0.00 3.60
91 92 2.132762 CCTCACAGTAGTTTTCGCGTT 58.867 47.619 5.77 0.00 0.00 4.84
92 93 1.068127 ACCTCACAGTAGTTTTCGCGT 59.932 47.619 5.77 0.00 0.00 6.01
93 94 1.779569 ACCTCACAGTAGTTTTCGCG 58.220 50.000 0.00 0.00 0.00 5.87
94 95 2.349532 GCAACCTCACAGTAGTTTTCGC 60.350 50.000 0.00 0.00 0.00 4.70
95 96 2.096909 CGCAACCTCACAGTAGTTTTCG 60.097 50.000 0.00 0.00 0.00 3.46
96 97 3.128349 TCGCAACCTCACAGTAGTTTTC 58.872 45.455 0.00 0.00 0.00 2.29
97 98 3.131396 CTCGCAACCTCACAGTAGTTTT 58.869 45.455 0.00 0.00 0.00 2.43
98 99 2.102588 ACTCGCAACCTCACAGTAGTTT 59.897 45.455 0.00 0.00 0.00 2.66
99 100 1.687123 ACTCGCAACCTCACAGTAGTT 59.313 47.619 0.00 0.00 0.00 2.24
100 101 1.329256 ACTCGCAACCTCACAGTAGT 58.671 50.000 0.00 0.00 0.00 2.73
101 102 2.329379 GAACTCGCAACCTCACAGTAG 58.671 52.381 0.00 0.00 0.00 2.57
102 103 1.335597 CGAACTCGCAACCTCACAGTA 60.336 52.381 0.00 0.00 0.00 2.74
103 104 0.597637 CGAACTCGCAACCTCACAGT 60.598 55.000 0.00 0.00 0.00 3.55
104 105 1.284982 CCGAACTCGCAACCTCACAG 61.285 60.000 0.00 0.00 38.18 3.66
105 106 1.300620 CCGAACTCGCAACCTCACA 60.301 57.895 0.00 0.00 38.18 3.58
106 107 0.878961 AACCGAACTCGCAACCTCAC 60.879 55.000 0.00 0.00 38.18 3.51
107 108 0.599204 GAACCGAACTCGCAACCTCA 60.599 55.000 0.00 0.00 38.18 3.86
108 109 0.599204 TGAACCGAACTCGCAACCTC 60.599 55.000 0.00 0.00 38.18 3.85
109 110 0.878961 GTGAACCGAACTCGCAACCT 60.879 55.000 0.00 0.00 38.18 3.50
110 111 0.878961 AGTGAACCGAACTCGCAACC 60.879 55.000 0.00 0.00 38.18 3.77
111 112 0.232303 CAGTGAACCGAACTCGCAAC 59.768 55.000 0.00 0.00 38.18 4.17
112 113 0.103390 TCAGTGAACCGAACTCGCAA 59.897 50.000 0.00 0.00 38.18 4.85
113 114 0.318699 CTCAGTGAACCGAACTCGCA 60.319 55.000 0.00 0.00 38.18 5.10
114 115 1.009389 CCTCAGTGAACCGAACTCGC 61.009 60.000 0.00 0.00 38.18 5.03
115 116 0.388649 CCCTCAGTGAACCGAACTCG 60.389 60.000 0.00 0.00 39.44 4.18
116 117 0.670854 GCCCTCAGTGAACCGAACTC 60.671 60.000 0.00 0.00 0.00 3.01
117 118 1.371558 GCCCTCAGTGAACCGAACT 59.628 57.895 0.00 0.00 0.00 3.01
118 119 1.671379 GGCCCTCAGTGAACCGAAC 60.671 63.158 0.00 0.00 0.00 3.95
119 120 2.144078 TGGCCCTCAGTGAACCGAA 61.144 57.895 0.00 0.00 0.00 4.30
120 121 2.525629 TGGCCCTCAGTGAACCGA 60.526 61.111 0.00 0.00 0.00 4.69
121 122 2.358737 GTGGCCCTCAGTGAACCG 60.359 66.667 0.00 0.00 0.00 4.44
122 123 2.034221 GGTGGCCCTCAGTGAACC 59.966 66.667 0.00 0.00 0.00 3.62
123 124 0.178990 AAAGGTGGCCCTCAGTGAAC 60.179 55.000 0.00 0.00 41.56 3.18
124 125 0.555769 AAAAGGTGGCCCTCAGTGAA 59.444 50.000 0.00 0.00 41.56 3.18
125 126 0.178992 CAAAAGGTGGCCCTCAGTGA 60.179 55.000 0.00 0.00 41.56 3.41
126 127 0.178992 TCAAAAGGTGGCCCTCAGTG 60.179 55.000 0.00 0.00 41.56 3.66
127 128 0.111253 CTCAAAAGGTGGCCCTCAGT 59.889 55.000 0.00 0.00 41.56 3.41
128 129 0.401738 TCTCAAAAGGTGGCCCTCAG 59.598 55.000 0.00 0.00 41.56 3.35
129 130 1.004745 GATCTCAAAAGGTGGCCCTCA 59.995 52.381 0.00 0.00 41.56 3.86
130 131 1.283321 AGATCTCAAAAGGTGGCCCTC 59.717 52.381 0.00 0.00 41.56 4.30
131 132 1.376649 AGATCTCAAAAGGTGGCCCT 58.623 50.000 0.00 0.00 45.63 5.19
132 133 2.222227 AAGATCTCAAAAGGTGGCCC 57.778 50.000 0.00 0.00 0.00 5.80
133 134 4.309933 CAAAAAGATCTCAAAAGGTGGCC 58.690 43.478 0.00 0.00 0.00 5.36
134 135 3.742882 GCAAAAAGATCTCAAAAGGTGGC 59.257 43.478 0.00 0.00 0.00 5.01
135 136 4.746611 GTGCAAAAAGATCTCAAAAGGTGG 59.253 41.667 0.00 0.00 0.00 4.61
136 137 5.350633 TGTGCAAAAAGATCTCAAAAGGTG 58.649 37.500 0.00 0.00 0.00 4.00
137 138 5.596836 TGTGCAAAAAGATCTCAAAAGGT 57.403 34.783 0.00 0.00 0.00 3.50
138 139 8.592105 TTATTGTGCAAAAAGATCTCAAAAGG 57.408 30.769 0.00 0.00 0.00 3.11
154 155 9.340695 GCGCAGAAAAATATATATTATTGTGCA 57.659 29.630 24.04 0.00 0.00 4.57
155 156 9.340695 TGCGCAGAAAAATATATATTATTGTGC 57.659 29.630 23.20 23.20 0.00 4.57
157 158 9.541724 CGTGCGCAGAAAAATATATATTATTGT 57.458 29.630 12.22 0.00 0.00 2.71
158 159 8.515473 GCGTGCGCAGAAAAATATATATTATTG 58.485 33.333 12.22 6.32 41.49 1.90
159 160 7.425309 CGCGTGCGCAGAAAAATATATATTATT 59.575 33.333 12.22 3.44 42.06 1.40
160 161 6.899771 CGCGTGCGCAGAAAAATATATATTAT 59.100 34.615 12.22 1.38 42.06 1.28
161 162 6.128769 ACGCGTGCGCAGAAAAATATATATTA 60.129 34.615 12.22 0.00 44.19 0.98
162 163 5.079406 CGCGTGCGCAGAAAAATATATATT 58.921 37.500 12.22 1.91 42.06 1.28
163 164 4.151689 ACGCGTGCGCAGAAAAATATATAT 59.848 37.500 12.22 0.00 44.19 0.86
164 165 3.491639 ACGCGTGCGCAGAAAAATATATA 59.508 39.130 12.22 0.00 44.19 0.86
165 166 2.286833 ACGCGTGCGCAGAAAAATATAT 59.713 40.909 12.22 0.00 44.19 0.86
166 167 1.661617 ACGCGTGCGCAGAAAAATATA 59.338 42.857 12.22 0.00 44.19 0.86
167 168 0.446222 ACGCGTGCGCAGAAAAATAT 59.554 45.000 12.22 0.00 44.19 1.28
168 169 0.236187 AACGCGTGCGCAGAAAAATA 59.764 45.000 14.98 0.00 44.19 1.40
169 170 0.593773 AAACGCGTGCGCAGAAAAAT 60.594 45.000 14.98 0.00 44.19 1.82
170 171 1.226435 AAACGCGTGCGCAGAAAAA 60.226 47.368 14.98 0.00 44.19 1.94
171 172 1.936880 CAAACGCGTGCGCAGAAAA 60.937 52.632 14.98 0.00 44.19 2.29
172 173 2.351774 CAAACGCGTGCGCAGAAA 60.352 55.556 14.98 0.00 44.19 2.52
173 174 3.568743 ACAAACGCGTGCGCAGAA 61.569 55.556 14.98 0.00 44.19 3.02
174 175 4.292208 CACAAACGCGTGCGCAGA 62.292 61.111 14.98 0.00 44.19 4.26
228 229 4.570663 CCTACTCGCCGCGGAAGG 62.571 72.222 33.48 21.42 0.00 3.46
238 239 3.905678 CAGGGGAGCGCCTACTCG 61.906 72.222 2.29 0.00 37.57 4.18
239 240 4.228567 GCAGGGGAGCGCCTACTC 62.229 72.222 2.29 0.00 35.86 2.59
241 242 4.096003 TTGCAGGGGAGCGCCTAC 62.096 66.667 2.29 1.27 37.31 3.18
242 243 4.096003 GTTGCAGGGGAGCGCCTA 62.096 66.667 2.29 0.00 37.31 3.93
248 249 4.641645 TGCCGTGTTGCAGGGGAG 62.642 66.667 9.48 0.00 39.49 4.30
249 250 4.196778 TTGCCGTGTTGCAGGGGA 62.197 61.111 9.48 4.21 43.21 4.81
250 251 3.977244 GTTGCCGTGTTGCAGGGG 61.977 66.667 9.48 0.00 43.21 4.79
251 252 2.906897 AGTTGCCGTGTTGCAGGG 60.907 61.111 3.74 3.74 43.21 4.45
252 253 2.639286 GAGTTGCCGTGTTGCAGG 59.361 61.111 0.00 0.00 43.21 4.85
253 254 2.639286 GGAGTTGCCGTGTTGCAG 59.361 61.111 0.00 0.00 43.21 4.41
254 255 2.904866 GGGAGTTGCCGTGTTGCA 60.905 61.111 0.00 0.00 40.07 4.08
255 256 2.904866 TGGGAGTTGCCGTGTTGC 60.905 61.111 0.00 0.00 37.63 4.17
256 257 1.101049 AAGTGGGAGTTGCCGTGTTG 61.101 55.000 0.00 0.00 37.63 3.33
257 258 1.101049 CAAGTGGGAGTTGCCGTGTT 61.101 55.000 0.00 0.00 37.63 3.32
258 259 1.525995 CAAGTGGGAGTTGCCGTGT 60.526 57.895 0.00 0.00 37.63 4.49
259 260 1.525995 ACAAGTGGGAGTTGCCGTG 60.526 57.895 0.00 0.00 37.63 4.94
260 261 1.525995 CACAAGTGGGAGTTGCCGT 60.526 57.895 0.00 0.00 37.63 5.68
261 262 2.908073 GCACAAGTGGGAGTTGCCG 61.908 63.158 2.00 0.00 37.63 5.69
262 263 2.908073 CGCACAAGTGGGAGTTGCC 61.908 63.158 11.35 0.00 45.10 4.52
263 264 2.117941 GACGCACAAGTGGGAGTTGC 62.118 60.000 21.82 0.78 45.10 4.17
264 265 0.532862 AGACGCACAAGTGGGAGTTG 60.533 55.000 21.82 0.00 45.10 3.16
265 266 1.045407 TAGACGCACAAGTGGGAGTT 58.955 50.000 21.82 10.09 45.10 3.01
266 267 1.045407 TTAGACGCACAAGTGGGAGT 58.955 50.000 21.82 4.58 45.10 3.85
267 268 2.163818 TTTAGACGCACAAGTGGGAG 57.836 50.000 21.82 0.96 45.10 4.30
268 269 2.811431 CAATTTAGACGCACAAGTGGGA 59.189 45.455 21.82 1.63 45.10 4.37
270 271 2.552315 ACCAATTTAGACGCACAAGTGG 59.448 45.455 2.00 0.00 40.68 4.00
271 272 3.896648 ACCAATTTAGACGCACAAGTG 57.103 42.857 0.00 0.00 0.00 3.16
272 273 3.435671 GCTACCAATTTAGACGCACAAGT 59.564 43.478 0.00 0.00 0.00 3.16
273 274 3.483574 CGCTACCAATTTAGACGCACAAG 60.484 47.826 0.00 0.00 0.00 3.16
274 275 2.413796 CGCTACCAATTTAGACGCACAA 59.586 45.455 0.00 0.00 0.00 3.33
275 276 1.996898 CGCTACCAATTTAGACGCACA 59.003 47.619 0.00 0.00 0.00 4.57
276 277 1.267383 GCGCTACCAATTTAGACGCAC 60.267 52.381 0.00 0.00 40.84 5.34
277 278 1.003851 GCGCTACCAATTTAGACGCA 58.996 50.000 0.00 0.00 40.84 5.24
278 279 1.003851 TGCGCTACCAATTTAGACGC 58.996 50.000 9.73 13.98 41.19 5.19
279 280 1.006391 CGTGCGCTACCAATTTAGACG 60.006 52.381 9.73 0.83 0.00 4.18
280 281 1.326548 CCGTGCGCTACCAATTTAGAC 59.673 52.381 9.73 0.00 0.00 2.59
281 282 1.066716 ACCGTGCGCTACCAATTTAGA 60.067 47.619 9.73 0.00 0.00 2.10
282 283 1.365699 ACCGTGCGCTACCAATTTAG 58.634 50.000 9.73 0.00 0.00 1.85
283 284 2.669300 TACCGTGCGCTACCAATTTA 57.331 45.000 9.73 0.00 0.00 1.40
284 285 2.032680 ATACCGTGCGCTACCAATTT 57.967 45.000 9.73 0.00 0.00 1.82
285 286 2.894763 TATACCGTGCGCTACCAATT 57.105 45.000 9.73 0.00 0.00 2.32
286 287 2.363038 TCTTATACCGTGCGCTACCAAT 59.637 45.455 9.73 0.00 0.00 3.16
287 288 1.750206 TCTTATACCGTGCGCTACCAA 59.250 47.619 9.73 0.00 0.00 3.67
288 289 1.391577 TCTTATACCGTGCGCTACCA 58.608 50.000 9.73 0.00 0.00 3.25
289 290 2.122564 GTTCTTATACCGTGCGCTACC 58.877 52.381 9.73 0.00 0.00 3.18
290 291 2.801063 TGTTCTTATACCGTGCGCTAC 58.199 47.619 9.73 4.27 0.00 3.58
291 292 3.507103 TTGTTCTTATACCGTGCGCTA 57.493 42.857 9.73 0.00 0.00 4.26
292 293 2.373540 TTGTTCTTATACCGTGCGCT 57.626 45.000 9.73 0.00 0.00 5.92
293 294 4.758561 CTTATTGTTCTTATACCGTGCGC 58.241 43.478 0.00 0.00 0.00 6.09
294 295 4.318546 GGCTTATTGTTCTTATACCGTGCG 60.319 45.833 0.00 0.00 0.00 5.34
295 296 4.573201 TGGCTTATTGTTCTTATACCGTGC 59.427 41.667 0.00 0.00 0.00 5.34
296 297 6.481976 TCATGGCTTATTGTTCTTATACCGTG 59.518 38.462 0.00 0.00 33.84 4.94
297 298 6.588204 TCATGGCTTATTGTTCTTATACCGT 58.412 36.000 0.00 0.00 0.00 4.83
298 299 7.672983 ATCATGGCTTATTGTTCTTATACCG 57.327 36.000 0.00 0.00 0.00 4.02
299 300 9.944376 TCTATCATGGCTTATTGTTCTTATACC 57.056 33.333 0.00 0.00 0.00 2.73
348 349 9.763979 CGCACTTTATTAAAATAAATCGCATTC 57.236 29.630 18.88 4.98 39.40 2.67
349 350 9.509855 TCGCACTTTATTAAAATAAATCGCATT 57.490 25.926 18.88 0.00 39.40 3.56
350 351 9.509855 TTCGCACTTTATTAAAATAAATCGCAT 57.490 25.926 18.88 2.61 39.40 4.73
351 352 8.897457 TTCGCACTTTATTAAAATAAATCGCA 57.103 26.923 18.88 9.28 39.40 5.10
364 365 9.117145 CGCATCAAAATATATTCGCACTTTATT 57.883 29.630 0.00 0.00 0.00 1.40
365 366 8.503196 TCGCATCAAAATATATTCGCACTTTAT 58.497 29.630 0.00 0.00 0.00 1.40
366 367 7.856556 TCGCATCAAAATATATTCGCACTTTA 58.143 30.769 0.00 0.00 0.00 1.85
367 368 6.724263 TCGCATCAAAATATATTCGCACTTT 58.276 32.000 0.00 0.00 0.00 2.66
368 369 6.299023 TCGCATCAAAATATATTCGCACTT 57.701 33.333 0.00 0.00 0.00 3.16
369 370 5.922739 TCGCATCAAAATATATTCGCACT 57.077 34.783 0.00 0.00 0.00 4.40
370 371 5.056807 CGTTCGCATCAAAATATATTCGCAC 59.943 40.000 0.00 0.00 0.00 5.34
371 372 5.136711 CGTTCGCATCAAAATATATTCGCA 58.863 37.500 0.00 0.00 0.00 5.10
372 373 5.137403 ACGTTCGCATCAAAATATATTCGC 58.863 37.500 0.00 0.00 0.00 4.70
373 374 7.589205 AAACGTTCGCATCAAAATATATTCG 57.411 32.000 0.00 0.00 0.00 3.34
428 429 9.928236 ATTGGTTCGTAATTTCAAAAATGTTTG 57.072 25.926 1.55 1.55 44.71 2.93
441 442 9.353999 GCTTCTTCAAATAATTGGTTCGTAATT 57.646 29.630 0.00 0.00 37.15 1.40
442 443 8.519526 TGCTTCTTCAAATAATTGGTTCGTAAT 58.480 29.630 0.00 0.00 37.15 1.89
443 444 7.877003 TGCTTCTTCAAATAATTGGTTCGTAA 58.123 30.769 0.00 0.00 37.15 3.18
444 445 7.441890 TGCTTCTTCAAATAATTGGTTCGTA 57.558 32.000 0.00 0.00 37.15 3.43
445 446 6.325919 TGCTTCTTCAAATAATTGGTTCGT 57.674 33.333 0.00 0.00 37.15 3.85
446 447 7.636259 TTTGCTTCTTCAAATAATTGGTTCG 57.364 32.000 0.00 0.00 37.15 3.95
530 531 9.934190 GTGTTGCAGAAAATTGTTTCATAAATT 57.066 25.926 2.35 0.00 44.82 1.82
531 532 8.274939 CGTGTTGCAGAAAATTGTTTCATAAAT 58.725 29.630 2.35 0.00 44.82 1.40
532 533 7.254252 CCGTGTTGCAGAAAATTGTTTCATAAA 60.254 33.333 2.35 0.00 44.82 1.40
533 534 6.199908 CCGTGTTGCAGAAAATTGTTTCATAA 59.800 34.615 2.35 0.00 44.82 1.90
534 535 5.689514 CCGTGTTGCAGAAAATTGTTTCATA 59.310 36.000 2.35 0.00 44.82 2.15
535 536 4.507388 CCGTGTTGCAGAAAATTGTTTCAT 59.493 37.500 2.35 0.00 44.82 2.57
536 537 3.862267 CCGTGTTGCAGAAAATTGTTTCA 59.138 39.130 2.35 0.00 44.82 2.69
537 538 3.302415 GCCGTGTTGCAGAAAATTGTTTC 60.302 43.478 0.00 0.00 43.05 2.78
538 539 2.607180 GCCGTGTTGCAGAAAATTGTTT 59.393 40.909 0.00 0.00 0.00 2.83
539 540 2.200899 GCCGTGTTGCAGAAAATTGTT 58.799 42.857 0.00 0.00 0.00 2.83
540 541 1.135915 TGCCGTGTTGCAGAAAATTGT 59.864 42.857 0.00 0.00 36.04 2.71
541 542 1.850377 TGCCGTGTTGCAGAAAATTG 58.150 45.000 0.00 0.00 36.04 2.32
542 543 2.159114 AGTTGCCGTGTTGCAGAAAATT 60.159 40.909 0.00 0.00 43.21 1.82
543 544 1.408702 AGTTGCCGTGTTGCAGAAAAT 59.591 42.857 0.00 0.00 43.21 1.82
544 545 0.814457 AGTTGCCGTGTTGCAGAAAA 59.186 45.000 0.00 0.00 43.21 2.29
545 546 0.380378 GAGTTGCCGTGTTGCAGAAA 59.620 50.000 0.00 0.00 43.21 2.52
546 547 1.444119 GGAGTTGCCGTGTTGCAGAA 61.444 55.000 0.00 0.00 43.21 3.02
547 548 1.891919 GGAGTTGCCGTGTTGCAGA 60.892 57.895 0.00 0.00 43.21 4.26
548 549 2.639286 GGAGTTGCCGTGTTGCAG 59.361 61.111 0.00 0.00 43.21 4.41
549 550 2.904866 GGGAGTTGCCGTGTTGCA 60.905 61.111 0.00 0.00 40.07 4.08
550 551 2.904866 TGGGAGTTGCCGTGTTGC 60.905 61.111 0.00 0.00 37.63 4.17
551 552 1.101049 AAGTGGGAGTTGCCGTGTTG 61.101 55.000 0.00 0.00 37.63 3.33
552 553 1.101049 CAAGTGGGAGTTGCCGTGTT 61.101 55.000 0.00 0.00 37.63 3.32
553 554 1.525995 CAAGTGGGAGTTGCCGTGT 60.526 57.895 0.00 0.00 37.63 4.49
554 555 1.525995 ACAAGTGGGAGTTGCCGTG 60.526 57.895 0.00 0.00 37.63 4.94
555 556 1.525995 CACAAGTGGGAGTTGCCGT 60.526 57.895 0.00 0.00 37.63 5.68
556 557 0.606401 ATCACAAGTGGGAGTTGCCG 60.606 55.000 0.00 0.00 37.63 5.69
557 558 2.290323 ACTATCACAAGTGGGAGTTGCC 60.290 50.000 0.00 0.00 31.85 4.52
558 559 3.003480 GACTATCACAAGTGGGAGTTGC 58.997 50.000 0.00 0.00 31.85 4.17
559 560 3.997021 GTGACTATCACAAGTGGGAGTTG 59.003 47.826 4.08 0.00 46.22 3.16
560 561 4.273148 GTGACTATCACAAGTGGGAGTT 57.727 45.455 4.08 0.00 46.22 3.01
561 562 3.963428 GTGACTATCACAAGTGGGAGT 57.037 47.619 4.08 4.26 46.22 3.85
571 572 6.198591 GCTACCAATTTAGACGTGACTATCAC 59.801 42.308 0.00 0.00 43.65 3.06
572 573 6.270815 GCTACCAATTTAGACGTGACTATCA 58.729 40.000 0.00 0.00 0.00 2.15
573 574 5.398711 CGCTACCAATTTAGACGTGACTATC 59.601 44.000 0.00 0.00 0.00 2.08
574 575 5.279384 CGCTACCAATTTAGACGTGACTAT 58.721 41.667 0.00 0.00 0.00 2.12
575 576 4.665212 CGCTACCAATTTAGACGTGACTA 58.335 43.478 0.00 0.00 0.00 2.59
576 577 3.508762 CGCTACCAATTTAGACGTGACT 58.491 45.455 0.00 0.00 0.00 3.41
577 578 2.028883 GCGCTACCAATTTAGACGTGAC 59.971 50.000 0.00 0.00 0.00 3.67
578 579 2.264813 GCGCTACCAATTTAGACGTGA 58.735 47.619 0.00 0.00 0.00 4.35
579 580 1.996898 TGCGCTACCAATTTAGACGTG 59.003 47.619 9.73 0.00 0.00 4.49
580 581 1.997606 GTGCGCTACCAATTTAGACGT 59.002 47.619 9.73 0.00 0.00 4.34
581 582 1.006391 CGTGCGCTACCAATTTAGACG 60.006 52.381 9.73 0.83 0.00 4.18
582 583 1.326548 CCGTGCGCTACCAATTTAGAC 59.673 52.381 9.73 0.00 0.00 2.59
583 584 1.066716 ACCGTGCGCTACCAATTTAGA 60.067 47.619 9.73 0.00 0.00 2.10
584 585 1.365699 ACCGTGCGCTACCAATTTAG 58.634 50.000 9.73 0.00 0.00 1.85
585 586 2.669300 TACCGTGCGCTACCAATTTA 57.331 45.000 9.73 0.00 0.00 1.40
586 587 2.032680 ATACCGTGCGCTACCAATTT 57.967 45.000 9.73 0.00 0.00 1.82
587 588 2.894763 TATACCGTGCGCTACCAATT 57.105 45.000 9.73 0.00 0.00 2.32
588 589 2.363038 TCTTATACCGTGCGCTACCAAT 59.637 45.455 9.73 0.00 0.00 3.16
589 590 1.750206 TCTTATACCGTGCGCTACCAA 59.250 47.619 9.73 0.00 0.00 3.67
590 591 1.391577 TCTTATACCGTGCGCTACCA 58.608 50.000 9.73 0.00 0.00 3.25
591 592 2.122564 GTTCTTATACCGTGCGCTACC 58.877 52.381 9.73 0.00 0.00 3.18
592 593 2.801063 TGTTCTTATACCGTGCGCTAC 58.199 47.619 9.73 4.27 0.00 3.58
593 594 3.507103 TTGTTCTTATACCGTGCGCTA 57.493 42.857 9.73 0.00 0.00 4.26
594 595 2.373540 TTGTTCTTATACCGTGCGCT 57.626 45.000 9.73 0.00 0.00 5.92
595 596 4.758561 CTTATTGTTCTTATACCGTGCGC 58.241 43.478 0.00 0.00 0.00 6.09
596 597 4.318546 GGCTTATTGTTCTTATACCGTGCG 60.319 45.833 0.00 0.00 0.00 5.34
597 598 4.573201 TGGCTTATTGTTCTTATACCGTGC 59.427 41.667 0.00 0.00 0.00 5.34
598 599 6.481976 TCATGGCTTATTGTTCTTATACCGTG 59.518 38.462 0.00 0.00 33.84 4.94
599 600 6.588204 TCATGGCTTATTGTTCTTATACCGT 58.412 36.000 0.00 0.00 0.00 4.83
600 601 7.672983 ATCATGGCTTATTGTTCTTATACCG 57.327 36.000 0.00 0.00 0.00 4.02
601 602 9.944376 TCTATCATGGCTTATTGTTCTTATACC 57.056 33.333 0.00 0.00 0.00 2.73
671 672 7.483307 AGTTCGCATCAAAATATATTTGCACT 58.517 30.769 11.42 8.66 0.00 4.40
672 673 7.684062 AGTTCGCATCAAAATATATTTGCAC 57.316 32.000 11.42 6.79 0.00 4.57
674 675 9.971744 AAAAAGTTCGCATCAAAATATATTTGC 57.028 25.926 11.42 10.07 0.00 3.68
746 750 7.441890 TGCTTCTTCAAATAATTGGTTCGTA 57.558 32.000 0.00 0.00 37.15 3.43
748 752 7.636259 TTTGCTTCTTCAAATAATTGGTTCG 57.364 32.000 0.00 0.00 37.15 3.95
974 983 6.073819 GGCTTTTGAAACATTACGCATCTTTT 60.074 34.615 0.00 0.00 0.00 2.27
978 987 4.233789 TGGCTTTTGAAACATTACGCATC 58.766 39.130 0.00 0.00 0.00 3.91
979 988 4.250116 TGGCTTTTGAAACATTACGCAT 57.750 36.364 0.00 0.00 0.00 4.73
980 989 3.717400 TGGCTTTTGAAACATTACGCA 57.283 38.095 0.00 0.00 0.00 5.24
982 991 6.761731 TGATTTGGCTTTTGAAACATTACG 57.238 33.333 0.00 0.00 0.00 3.18
983 992 9.949174 AAAATGATTTGGCTTTTGAAACATTAC 57.051 25.926 0.00 0.00 0.00 1.89
1056 1070 3.082379 CTATTTGACGCGCGCTGCA 62.082 57.895 32.58 22.72 46.97 4.41
1142 1156 2.171870 GGCCCACTACCTACTTTGCATA 59.828 50.000 0.00 0.00 0.00 3.14
1737 1767 2.471749 GGCAATTCGTCGAACAAGTACG 60.472 50.000 10.39 0.00 37.96 3.67
1779 1809 1.450642 GGTAAGAATCCCGCTCCCC 59.549 63.158 0.00 0.00 0.00 4.81
1781 1811 0.680061 ATCGGTAAGAATCCCGCTCC 59.320 55.000 0.00 0.00 43.87 4.70
1787 1817 4.509230 GGAAACGGTAATCGGTAAGAATCC 59.491 45.833 0.00 0.00 44.45 3.01
1835 1865 3.928375 GCAAGATGGCCACTTATTTGTTG 59.072 43.478 8.16 7.51 0.00 3.33
1961 1995 4.025229 CACATGTGCGTTATAGGCGTATTT 60.025 41.667 13.94 0.00 0.00 1.40
2321 2532 9.586435 AACAGTCAGAAAATCCTTAAACTTTTG 57.414 29.630 0.00 0.00 0.00 2.44
2356 2567 8.682710 TGCAATAGGACCAAAATCAAATACTAC 58.317 33.333 0.00 0.00 0.00 2.73
2563 2785 1.141449 CTCTCTTCTCCTGCCGCTG 59.859 63.158 0.00 0.00 0.00 5.18
2564 2786 2.057408 CCTCTCTTCTCCTGCCGCT 61.057 63.158 0.00 0.00 0.00 5.52
2585 2807 0.393537 CATTGCGGCTCCTCCTTCTT 60.394 55.000 0.00 0.00 0.00 2.52
2607 2829 3.760684 CACTCCTTCCTAGCAAAAGCAAT 59.239 43.478 0.00 0.00 0.00 3.56
2615 2837 1.962402 GCCTCTCACTCCTTCCTAGCA 60.962 57.143 0.00 0.00 0.00 3.49
2723 2945 0.539051 CTCGGCCTCCTTCTGACAAT 59.461 55.000 0.00 0.00 0.00 2.71
2730 2952 1.671901 CCTCTGACTCGGCCTCCTTC 61.672 65.000 0.00 0.00 0.00 3.46
2733 2955 1.682684 TTCCTCTGACTCGGCCTCC 60.683 63.158 0.00 0.00 0.00 4.30
2739 2961 2.098443 GGCTTAGAGTTCCTCTGACTCG 59.902 54.545 4.04 0.00 46.29 4.18
2752 2974 2.043227 CTGGGAGGGTAAGGCTTAGAG 58.957 57.143 7.33 0.00 0.00 2.43
2756 2978 4.171186 CCTGGGAGGGTAAGGCTT 57.829 61.111 4.58 4.58 0.00 4.35
2837 3059 1.406887 CGTTCTGTCCCCACCTATTGG 60.407 57.143 0.00 0.00 46.47 3.16
2840 3062 0.617820 AGCGTTCTGTCCCCACCTAT 60.618 55.000 0.00 0.00 0.00 2.57
2914 3137 8.915871 TCAATATTGAGCTTTCATTTGTTAGC 57.084 30.769 14.23 0.00 32.50 3.09
2945 3168 7.340232 AGAATACATCATACAGCCAAACATGTT 59.660 33.333 4.92 4.92 0.00 2.71
2979 3202 6.653989 TCTTTACTTGAAGGATCTCATTCCC 58.346 40.000 0.00 0.00 35.96 3.97
3007 3230 3.879892 GCTTCCACAACCTCATCCTATTC 59.120 47.826 0.00 0.00 0.00 1.75
3038 3261 8.665685 GCCCACGATTTTAATCTATGGTAATAG 58.334 37.037 15.68 6.65 37.51 1.73
3060 3283 2.184533 TGATAGAGGTCTTTTCGCCCA 58.815 47.619 0.00 0.00 0.00 5.36
3135 3358 1.681486 TATTGCGGCGTGATCTCCCA 61.681 55.000 9.37 0.00 0.00 4.37
3167 3397 3.332034 CGATGGTTAACGAAGAAAGGGT 58.668 45.455 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.