Multiple sequence alignment - TraesCS4D01G127300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G127300 chr4D 100.000 4053 0 0 1 4053 111932179 111936231 0.000000e+00 7485.0
1 TraesCS4D01G127300 chr4D 95.059 2044 65 11 1008 3030 109279359 109277331 0.000000e+00 3182.0
2 TraesCS4D01G127300 chr4A 90.899 1802 99 25 972 2740 465414424 465412655 0.000000e+00 2359.0
3 TraesCS4D01G127300 chr4A 88.041 970 65 35 3112 4053 465412343 465411397 0.000000e+00 1101.0
4 TraesCS4D01G127300 chr4A 88.076 369 24 8 2761 3114 465412754 465412391 1.740000e-113 420.0
5 TraesCS4D01G127300 chr4A 82.463 268 30 10 2893 3149 467236248 467236509 6.820000e-53 219.0
6 TraesCS4D01G127300 chr4B 88.384 1894 110 24 982 2850 172500815 172502623 0.000000e+00 2178.0
7 TraesCS4D01G127300 chr4B 82.647 801 58 34 3300 4053 172503266 172504032 5.710000e-178 634.0
8 TraesCS4D01G127300 chr4B 81.698 530 34 14 2627 3127 172502520 172503015 2.290000e-102 383.0
9 TraesCS4D01G127300 chr6D 93.514 555 32 3 312 863 222716088 222716641 0.000000e+00 822.0
10 TraesCS4D01G127300 chr6D 96.785 311 8 2 4 312 220452523 220452213 6.010000e-143 518.0
11 TraesCS4D01G127300 chr6D 96.486 313 9 2 1 312 31613717 31614028 2.160000e-142 516.0
12 TraesCS4D01G127300 chr6D 96.486 313 9 2 1 312 290399260 290398949 2.160000e-142 516.0
13 TraesCS4D01G127300 chr2D 91.019 579 40 10 312 881 423377194 423376619 0.000000e+00 771.0
14 TraesCS4D01G127300 chr6A 92.421 541 37 3 312 849 278578520 278577981 0.000000e+00 769.0
15 TraesCS4D01G127300 chr2A 90.862 580 41 8 312 881 717197065 717197642 0.000000e+00 767.0
16 TraesCS4D01G127300 chr2A 90.451 576 42 6 317 881 686293998 686293425 0.000000e+00 747.0
17 TraesCS4D01G127300 chr5D 97.125 313 7 2 1 312 120355720 120355409 9.980000e-146 527.0
18 TraesCS4D01G127300 chr5D 96.805 313 8 2 1 312 306810780 306810469 4.640000e-144 521.0
19 TraesCS4D01G127300 chr5D 96.215 317 7 3 1 312 135762003 135761687 7.770000e-142 514.0
20 TraesCS4D01G127300 chr3A 97.125 313 7 2 1 312 186004842 186005153 9.980000e-146 527.0
21 TraesCS4D01G127300 chr3A 81.664 589 85 19 314 888 556265799 556265220 6.130000e-128 468.0
22 TraesCS4D01G127300 chr1D 83.108 592 77 18 315 888 395633405 395632819 6.010000e-143 518.0
23 TraesCS4D01G127300 chr1D 96.486 313 8 3 1 312 288230236 288229926 7.770000e-142 514.0
24 TraesCS4D01G127300 chr1D 96.486 313 7 3 1 312 430718333 430718024 7.770000e-142 514.0
25 TraesCS4D01G127300 chr6B 82.064 591 83 20 282 863 701653817 701654393 2.190000e-132 483.0
26 TraesCS4D01G127300 chr7D 80.756 582 81 23 312 881 471870723 471870161 3.740000e-115 425.0
27 TraesCS4D01G127300 chr7D 82.500 80 10 3 887 964 13013643 13013566 2.610000e-07 67.6
28 TraesCS4D01G127300 chr1B 83.333 78 13 0 893 970 6513957 6514034 5.620000e-09 73.1
29 TraesCS4D01G127300 chr1B 84.615 65 10 0 906 970 7449817 7449753 9.400000e-07 65.8
30 TraesCS4D01G127300 chr7A 86.441 59 8 0 906 964 12414043 12413985 9.400000e-07 65.8
31 TraesCS4D01G127300 chr3B 86.957 46 6 0 888 933 722208848 722208893 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G127300 chr4D 111932179 111936231 4052 False 7485.000000 7485 100.000000 1 4053 1 chr4D.!!$F1 4052
1 TraesCS4D01G127300 chr4D 109277331 109279359 2028 True 3182.000000 3182 95.059000 1008 3030 1 chr4D.!!$R1 2022
2 TraesCS4D01G127300 chr4A 465411397 465414424 3027 True 1293.333333 2359 89.005333 972 4053 3 chr4A.!!$R1 3081
3 TraesCS4D01G127300 chr4B 172500815 172504032 3217 False 1065.000000 2178 84.243000 982 4053 3 chr4B.!!$F1 3071
4 TraesCS4D01G127300 chr6D 222716088 222716641 553 False 822.000000 822 93.514000 312 863 1 chr6D.!!$F2 551
5 TraesCS4D01G127300 chr2D 423376619 423377194 575 True 771.000000 771 91.019000 312 881 1 chr2D.!!$R1 569
6 TraesCS4D01G127300 chr6A 278577981 278578520 539 True 769.000000 769 92.421000 312 849 1 chr6A.!!$R1 537
7 TraesCS4D01G127300 chr2A 717197065 717197642 577 False 767.000000 767 90.862000 312 881 1 chr2A.!!$F1 569
8 TraesCS4D01G127300 chr2A 686293425 686293998 573 True 747.000000 747 90.451000 317 881 1 chr2A.!!$R1 564
9 TraesCS4D01G127300 chr3A 556265220 556265799 579 True 468.000000 468 81.664000 314 888 1 chr3A.!!$R1 574
10 TraesCS4D01G127300 chr1D 395632819 395633405 586 True 518.000000 518 83.108000 315 888 1 chr1D.!!$R2 573
11 TraesCS4D01G127300 chr6B 701653817 701654393 576 False 483.000000 483 82.064000 282 863 1 chr6B.!!$F1 581
12 TraesCS4D01G127300 chr7D 471870161 471870723 562 True 425.000000 425 80.756000 312 881 1 chr7D.!!$R2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.032515 TCTATCGGCTCCAACCTGGA 60.033 55.0 0.00 0.0 45.98 3.86 F
768 785 0.386476 TTGAGCTTTGTTGCTGCCTG 59.614 50.0 0.00 0.0 44.17 4.85 F
2684 2898 0.106469 ATAGCGCCAGAGGAGACAGA 60.106 55.0 2.29 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1129 1166 0.391263 GGAAGGCGGGTGTTGACTAG 60.391 60.0 0.0 0.0 0.00 2.57 R
2708 2922 0.036010 CTCCTCACCGCCATCTTGTT 60.036 55.0 0.0 0.0 0.00 2.83 R
3485 3976 0.596083 CGTTTGCATCCGCCAACAAA 60.596 50.0 0.0 0.0 42.45 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.691860 CAGAAAATGATTCCGACAAGCT 57.308 40.909 0.00 0.00 0.00 3.74
22 23 5.051891 CAGAAAATGATTCCGACAAGCTT 57.948 39.130 0.00 0.00 0.00 3.74
23 24 4.855388 CAGAAAATGATTCCGACAAGCTTG 59.145 41.667 24.84 24.84 0.00 4.01
24 25 4.761739 AGAAAATGATTCCGACAAGCTTGA 59.238 37.500 32.50 10.47 0.00 3.02
25 26 4.425577 AAATGATTCCGACAAGCTTGAC 57.574 40.909 32.50 24.64 0.00 3.18
26 27 1.808411 TGATTCCGACAAGCTTGACC 58.192 50.000 32.50 20.65 0.00 4.02
27 28 1.087501 GATTCCGACAAGCTTGACCC 58.912 55.000 32.50 18.33 0.00 4.46
28 29 0.322546 ATTCCGACAAGCTTGACCCC 60.323 55.000 32.50 16.05 0.00 4.95
29 30 2.725203 TTCCGACAAGCTTGACCCCG 62.725 60.000 32.50 24.69 0.00 5.73
30 31 2.342279 CGACAAGCTTGACCCCGA 59.658 61.111 32.50 0.00 0.00 5.14
31 32 1.301401 CGACAAGCTTGACCCCGAA 60.301 57.895 32.50 0.00 0.00 4.30
32 33 0.882927 CGACAAGCTTGACCCCGAAA 60.883 55.000 32.50 0.00 0.00 3.46
33 34 0.591659 GACAAGCTTGACCCCGAAAC 59.408 55.000 32.50 8.16 0.00 2.78
34 35 0.182775 ACAAGCTTGACCCCGAAACT 59.817 50.000 32.50 3.08 0.00 2.66
35 36 0.593128 CAAGCTTGACCCCGAAACTG 59.407 55.000 22.31 0.00 0.00 3.16
36 37 1.172812 AAGCTTGACCCCGAAACTGC 61.173 55.000 0.00 0.00 0.00 4.40
37 38 2.966309 GCTTGACCCCGAAACTGCG 61.966 63.158 0.00 0.00 0.00 5.18
38 39 2.966309 CTTGACCCCGAAACTGCGC 61.966 63.158 0.00 0.00 0.00 6.09
39 40 3.758973 TTGACCCCGAAACTGCGCA 62.759 57.895 10.98 10.98 0.00 6.09
40 41 3.723348 GACCCCGAAACTGCGCAC 61.723 66.667 5.66 0.00 0.00 5.34
41 42 4.555709 ACCCCGAAACTGCGCACA 62.556 61.111 5.66 0.00 0.00 4.57
50 51 3.248029 CTGCGCACAGTGAAGGTC 58.752 61.111 5.66 0.00 39.22 3.85
51 52 1.301244 CTGCGCACAGTGAAGGTCT 60.301 57.895 5.66 0.00 39.22 3.85
52 53 0.882042 CTGCGCACAGTGAAGGTCTT 60.882 55.000 5.66 0.00 39.22 3.01
53 54 1.159713 TGCGCACAGTGAAGGTCTTG 61.160 55.000 5.66 0.00 0.00 3.02
54 55 1.160329 GCGCACAGTGAAGGTCTTGT 61.160 55.000 4.15 0.00 0.00 3.16
55 56 0.861837 CGCACAGTGAAGGTCTTGTC 59.138 55.000 4.15 0.00 0.00 3.18
56 57 1.806247 CGCACAGTGAAGGTCTTGTCA 60.806 52.381 4.15 0.00 0.00 3.58
57 58 1.599542 GCACAGTGAAGGTCTTGTCAC 59.400 52.381 4.15 0.00 43.70 3.67
65 66 6.031751 GTGAAGGTCTTGTCACTAGAATCT 57.968 41.667 0.00 0.00 40.82 2.40
66 67 7.159322 GTGAAGGTCTTGTCACTAGAATCTA 57.841 40.000 0.00 0.00 40.82 1.98
67 68 7.777095 GTGAAGGTCTTGTCACTAGAATCTAT 58.223 38.462 0.00 0.00 40.82 1.98
68 69 7.918562 GTGAAGGTCTTGTCACTAGAATCTATC 59.081 40.741 0.00 0.00 40.82 2.08
69 70 6.627395 AGGTCTTGTCACTAGAATCTATCG 57.373 41.667 0.00 0.00 0.00 2.92
70 71 5.533154 AGGTCTTGTCACTAGAATCTATCGG 59.467 44.000 0.00 0.00 0.00 4.18
71 72 5.216648 GTCTTGTCACTAGAATCTATCGGC 58.783 45.833 0.00 0.00 0.00 5.54
72 73 5.009210 GTCTTGTCACTAGAATCTATCGGCT 59.991 44.000 0.00 0.00 0.00 5.52
73 74 5.239744 TCTTGTCACTAGAATCTATCGGCTC 59.760 44.000 0.00 0.00 0.00 4.70
74 75 3.821600 TGTCACTAGAATCTATCGGCTCC 59.178 47.826 0.00 0.00 0.00 4.70
75 76 3.821600 GTCACTAGAATCTATCGGCTCCA 59.178 47.826 0.00 0.00 0.00 3.86
76 77 4.278669 GTCACTAGAATCTATCGGCTCCAA 59.721 45.833 0.00 0.00 0.00 3.53
77 78 4.278669 TCACTAGAATCTATCGGCTCCAAC 59.721 45.833 0.00 0.00 0.00 3.77
78 79 3.574826 ACTAGAATCTATCGGCTCCAACC 59.425 47.826 0.00 0.00 0.00 3.77
79 80 2.683768 AGAATCTATCGGCTCCAACCT 58.316 47.619 0.00 0.00 0.00 3.50
80 81 2.366916 AGAATCTATCGGCTCCAACCTG 59.633 50.000 0.00 0.00 0.00 4.00
81 82 1.051812 ATCTATCGGCTCCAACCTGG 58.948 55.000 0.00 0.00 39.43 4.45
82 83 0.032515 TCTATCGGCTCCAACCTGGA 60.033 55.000 0.00 0.00 45.98 3.86
90 91 3.419793 TCCAACCTGGAGCAAGTTG 57.580 52.632 0.00 0.00 42.67 3.16
91 92 0.550914 TCCAACCTGGAGCAAGTTGT 59.449 50.000 0.00 0.00 42.67 3.32
92 93 0.954452 CCAACCTGGAGCAAGTTGTC 59.046 55.000 0.00 1.16 40.96 3.18
93 94 1.679139 CAACCTGGAGCAAGTTGTCA 58.321 50.000 0.00 0.65 36.87 3.58
94 95 1.605710 CAACCTGGAGCAAGTTGTCAG 59.394 52.381 0.00 9.73 36.87 3.51
95 96 0.839946 ACCTGGAGCAAGTTGTCAGT 59.160 50.000 0.00 0.00 0.00 3.41
96 97 1.212935 ACCTGGAGCAAGTTGTCAGTT 59.787 47.619 0.00 0.00 0.00 3.16
97 98 2.301346 CCTGGAGCAAGTTGTCAGTTT 58.699 47.619 4.48 0.00 0.00 2.66
98 99 2.291741 CCTGGAGCAAGTTGTCAGTTTC 59.708 50.000 4.48 0.00 0.00 2.78
99 100 2.291741 CTGGAGCAAGTTGTCAGTTTCC 59.708 50.000 4.48 3.79 0.00 3.13
100 101 2.092429 TGGAGCAAGTTGTCAGTTTCCT 60.092 45.455 4.48 0.00 0.00 3.36
101 102 2.291741 GGAGCAAGTTGTCAGTTTCCTG 59.708 50.000 4.48 0.00 40.25 3.86
102 103 3.206150 GAGCAAGTTGTCAGTTTCCTGA 58.794 45.455 4.48 0.00 45.44 3.86
112 113 3.679389 TCAGTTTCCTGAGATGCTTTCC 58.321 45.455 0.00 0.00 42.80 3.13
113 114 2.417933 CAGTTTCCTGAGATGCTTTCCG 59.582 50.000 0.00 0.00 41.50 4.30
114 115 2.039084 AGTTTCCTGAGATGCTTTCCGT 59.961 45.455 0.00 0.00 0.00 4.69
115 116 2.099141 TTCCTGAGATGCTTTCCGTG 57.901 50.000 0.00 0.00 0.00 4.94
116 117 0.391661 TCCTGAGATGCTTTCCGTGC 60.392 55.000 0.00 0.00 0.00 5.34
117 118 1.372087 CCTGAGATGCTTTCCGTGCC 61.372 60.000 0.00 0.00 0.00 5.01
118 119 0.392193 CTGAGATGCTTTCCGTGCCT 60.392 55.000 0.00 0.00 0.00 4.75
119 120 0.674581 TGAGATGCTTTCCGTGCCTG 60.675 55.000 0.00 0.00 0.00 4.85
120 121 1.372087 GAGATGCTTTCCGTGCCTGG 61.372 60.000 0.00 0.00 0.00 4.45
121 122 1.377202 GATGCTTTCCGTGCCTGGA 60.377 57.895 0.00 0.00 35.83 3.86
122 123 1.372087 GATGCTTTCCGTGCCTGGAG 61.372 60.000 0.00 0.00 39.72 3.86
123 124 1.841302 ATGCTTTCCGTGCCTGGAGA 61.841 55.000 0.00 0.00 39.72 3.71
124 125 1.302511 GCTTTCCGTGCCTGGAGAA 60.303 57.895 0.00 0.00 39.72 2.87
125 126 1.301677 GCTTTCCGTGCCTGGAGAAG 61.302 60.000 0.00 9.72 39.72 2.85
126 127 1.301677 CTTTCCGTGCCTGGAGAAGC 61.302 60.000 0.00 0.00 39.72 3.86
127 128 1.768684 TTTCCGTGCCTGGAGAAGCT 61.769 55.000 0.00 0.00 39.72 3.74
128 129 0.902984 TTCCGTGCCTGGAGAAGCTA 60.903 55.000 0.00 0.00 39.72 3.32
129 130 0.687757 TCCGTGCCTGGAGAAGCTAT 60.688 55.000 0.00 0.00 33.05 2.97
130 131 1.040646 CCGTGCCTGGAGAAGCTATA 58.959 55.000 0.00 0.00 0.00 1.31
131 132 1.620819 CCGTGCCTGGAGAAGCTATAT 59.379 52.381 0.00 0.00 0.00 0.86
132 133 2.826128 CCGTGCCTGGAGAAGCTATATA 59.174 50.000 0.00 0.00 0.00 0.86
133 134 3.449018 CCGTGCCTGGAGAAGCTATATAT 59.551 47.826 0.00 0.00 0.00 0.86
134 135 4.440802 CCGTGCCTGGAGAAGCTATATATC 60.441 50.000 0.00 0.00 0.00 1.63
135 136 4.677584 GTGCCTGGAGAAGCTATATATCG 58.322 47.826 0.00 0.00 0.00 2.92
136 137 4.399618 GTGCCTGGAGAAGCTATATATCGA 59.600 45.833 0.00 0.00 0.00 3.59
137 138 4.642437 TGCCTGGAGAAGCTATATATCGAG 59.358 45.833 0.00 0.00 0.00 4.04
138 139 4.037446 GCCTGGAGAAGCTATATATCGAGG 59.963 50.000 0.00 5.48 38.49 4.63
139 140 5.197451 CCTGGAGAAGCTATATATCGAGGT 58.803 45.833 2.38 0.00 32.88 3.85
140 141 5.067153 CCTGGAGAAGCTATATATCGAGGTG 59.933 48.000 2.38 0.00 32.88 4.00
141 142 5.816682 TGGAGAAGCTATATATCGAGGTGA 58.183 41.667 0.00 0.00 0.00 4.02
142 143 6.427441 TGGAGAAGCTATATATCGAGGTGAT 58.573 40.000 0.00 0.00 41.30 3.06
143 144 6.319911 TGGAGAAGCTATATATCGAGGTGATG 59.680 42.308 0.00 0.00 37.99 3.07
144 145 6.320164 GGAGAAGCTATATATCGAGGTGATGT 59.680 42.308 0.00 0.00 37.99 3.06
145 146 7.147983 GGAGAAGCTATATATCGAGGTGATGTT 60.148 40.741 0.00 0.00 37.99 2.71
146 147 7.767261 AGAAGCTATATATCGAGGTGATGTTC 58.233 38.462 0.00 0.00 37.99 3.18
147 148 6.458232 AGCTATATATCGAGGTGATGTTCC 57.542 41.667 0.00 0.00 37.99 3.62
148 149 6.191315 AGCTATATATCGAGGTGATGTTCCT 58.809 40.000 0.00 0.00 37.99 3.36
149 150 6.665680 AGCTATATATCGAGGTGATGTTCCTT 59.334 38.462 0.00 0.00 37.99 3.36
150 151 7.179338 AGCTATATATCGAGGTGATGTTCCTTT 59.821 37.037 0.00 0.00 37.99 3.11
151 152 7.489757 GCTATATATCGAGGTGATGTTCCTTTC 59.510 40.741 0.00 0.00 37.99 2.62
152 153 2.762535 TCGAGGTGATGTTCCTTTCC 57.237 50.000 0.00 0.00 35.20 3.13
153 154 2.257207 TCGAGGTGATGTTCCTTTCCT 58.743 47.619 0.00 0.00 35.20 3.36
154 155 2.028112 TCGAGGTGATGTTCCTTTCCTG 60.028 50.000 0.00 0.00 35.20 3.86
155 156 2.289694 CGAGGTGATGTTCCTTTCCTGT 60.290 50.000 0.00 0.00 35.20 4.00
156 157 3.756117 GAGGTGATGTTCCTTTCCTGTT 58.244 45.455 0.00 0.00 35.20 3.16
157 158 4.562757 CGAGGTGATGTTCCTTTCCTGTTA 60.563 45.833 0.00 0.00 35.20 2.41
158 159 5.313712 GAGGTGATGTTCCTTTCCTGTTAA 58.686 41.667 0.00 0.00 35.20 2.01
159 160 5.701224 AGGTGATGTTCCTTTCCTGTTAAA 58.299 37.500 0.00 0.00 30.18 1.52
160 161 6.314917 AGGTGATGTTCCTTTCCTGTTAAAT 58.685 36.000 0.00 0.00 30.18 1.40
161 162 6.209391 AGGTGATGTTCCTTTCCTGTTAAATG 59.791 38.462 0.00 0.00 30.18 2.32
162 163 6.015434 GGTGATGTTCCTTTCCTGTTAAATGT 60.015 38.462 0.00 0.00 0.00 2.71
163 164 7.433680 GTGATGTTCCTTTCCTGTTAAATGTT 58.566 34.615 0.00 0.00 0.00 2.71
164 165 8.573035 GTGATGTTCCTTTCCTGTTAAATGTTA 58.427 33.333 0.00 0.00 0.00 2.41
165 166 9.137459 TGATGTTCCTTTCCTGTTAAATGTTAA 57.863 29.630 0.00 0.00 0.00 2.01
166 167 9.406828 GATGTTCCTTTCCTGTTAAATGTTAAC 57.593 33.333 0.00 0.00 0.00 2.01
167 168 7.718525 TGTTCCTTTCCTGTTAAATGTTAACC 58.281 34.615 2.48 0.00 0.00 2.85
168 169 7.342284 TGTTCCTTTCCTGTTAAATGTTAACCA 59.658 33.333 2.48 0.00 0.00 3.67
169 170 8.364894 GTTCCTTTCCTGTTAAATGTTAACCAT 58.635 33.333 2.48 0.00 34.36 3.55
170 171 9.589461 TTCCTTTCCTGTTAAATGTTAACCATA 57.411 29.630 2.48 0.00 31.97 2.74
171 172 9.589461 TCCTTTCCTGTTAAATGTTAACCATAA 57.411 29.630 2.48 0.00 31.97 1.90
172 173 9.855021 CCTTTCCTGTTAAATGTTAACCATAAG 57.145 33.333 2.48 6.73 31.97 1.73
176 177 9.667107 TCCTGTTAAATGTTAACCATAAGAGAG 57.333 33.333 15.12 9.14 31.97 3.20
177 178 9.449719 CCTGTTAAATGTTAACCATAAGAGAGT 57.550 33.333 15.12 0.00 31.97 3.24
185 186 8.918202 TGTTAACCATAAGAGAGTTCAATTGT 57.082 30.769 5.13 0.00 0.00 2.71
186 187 8.783093 TGTTAACCATAAGAGAGTTCAATTGTG 58.217 33.333 5.13 0.00 0.00 3.33
187 188 8.999431 GTTAACCATAAGAGAGTTCAATTGTGA 58.001 33.333 5.13 0.00 0.00 3.58
188 189 7.440523 AACCATAAGAGAGTTCAATTGTGAC 57.559 36.000 5.13 6.02 31.90 3.67
189 190 6.533730 ACCATAAGAGAGTTCAATTGTGACA 58.466 36.000 5.13 0.00 31.90 3.58
190 191 6.428159 ACCATAAGAGAGTTCAATTGTGACAC 59.572 38.462 5.13 0.00 31.90 3.67
191 192 6.128172 CCATAAGAGAGTTCAATTGTGACACC 60.128 42.308 5.13 3.03 31.90 4.16
192 193 4.696479 AGAGAGTTCAATTGTGACACCT 57.304 40.909 5.13 7.19 31.90 4.00
193 194 5.041191 AGAGAGTTCAATTGTGACACCTT 57.959 39.130 5.13 0.00 31.90 3.50
194 195 5.440610 AGAGAGTTCAATTGTGACACCTTT 58.559 37.500 5.13 0.00 31.90 3.11
195 196 5.888161 AGAGAGTTCAATTGTGACACCTTTT 59.112 36.000 5.13 0.00 31.90 2.27
196 197 6.378280 AGAGAGTTCAATTGTGACACCTTTTT 59.622 34.615 5.13 0.00 31.90 1.94
231 232 9.671279 ACAATGACAATGTACTATGATTTCTGA 57.329 29.630 0.00 0.00 0.00 3.27
234 235 8.722480 TGACAATGTACTATGATTTCTGAAGG 57.278 34.615 5.62 0.00 0.00 3.46
235 236 8.539544 TGACAATGTACTATGATTTCTGAAGGA 58.460 33.333 5.62 0.00 0.00 3.36
236 237 9.553064 GACAATGTACTATGATTTCTGAAGGAT 57.447 33.333 5.62 0.00 0.00 3.24
237 238 9.911788 ACAATGTACTATGATTTCTGAAGGATT 57.088 29.630 5.62 0.00 0.00 3.01
253 254 6.840780 GAAGGATTCTTTTGGAGGATTTCA 57.159 37.500 0.00 0.00 43.23 2.69
254 255 6.847421 AAGGATTCTTTTGGAGGATTTCAG 57.153 37.500 0.00 0.00 0.00 3.02
255 256 5.896963 AGGATTCTTTTGGAGGATTTCAGT 58.103 37.500 0.00 0.00 0.00 3.41
256 257 7.032598 AGGATTCTTTTGGAGGATTTCAGTA 57.967 36.000 0.00 0.00 0.00 2.74
257 258 6.887002 AGGATTCTTTTGGAGGATTTCAGTAC 59.113 38.462 0.00 0.00 0.00 2.73
258 259 6.659242 GGATTCTTTTGGAGGATTTCAGTACA 59.341 38.462 0.00 0.00 0.00 2.90
259 260 7.340487 GGATTCTTTTGGAGGATTTCAGTACAT 59.660 37.037 0.00 0.00 0.00 2.29
260 261 9.396022 GATTCTTTTGGAGGATTTCAGTACATA 57.604 33.333 0.00 0.00 0.00 2.29
261 262 8.561738 TTCTTTTGGAGGATTTCAGTACATAC 57.438 34.615 0.00 0.00 0.00 2.39
262 263 7.685481 TCTTTTGGAGGATTTCAGTACATACA 58.315 34.615 0.00 0.00 0.00 2.29
263 264 8.328758 TCTTTTGGAGGATTTCAGTACATACAT 58.671 33.333 0.00 0.00 0.00 2.29
264 265 7.864108 TTTGGAGGATTTCAGTACATACATG 57.136 36.000 0.00 0.00 0.00 3.21
265 266 5.368145 TGGAGGATTTCAGTACATACATGC 58.632 41.667 0.00 0.00 0.00 4.06
266 267 4.757149 GGAGGATTTCAGTACATACATGCC 59.243 45.833 0.00 0.00 0.00 4.40
267 268 4.718961 AGGATTTCAGTACATACATGCCC 58.281 43.478 0.00 0.00 0.00 5.36
268 269 3.821033 GGATTTCAGTACATACATGCCCC 59.179 47.826 0.00 0.00 0.00 5.80
269 270 3.290948 TTTCAGTACATACATGCCCCC 57.709 47.619 0.00 0.00 0.00 5.40
291 292 2.157640 CCCCCATATTGGTTGCTTGA 57.842 50.000 0.00 0.00 35.17 3.02
292 293 2.681422 CCCCCATATTGGTTGCTTGAT 58.319 47.619 0.00 0.00 35.17 2.57
293 294 2.629617 CCCCCATATTGGTTGCTTGATC 59.370 50.000 0.00 0.00 35.17 2.92
294 295 2.629617 CCCCATATTGGTTGCTTGATCC 59.370 50.000 0.00 0.00 35.17 3.36
295 296 3.298619 CCCATATTGGTTGCTTGATCCA 58.701 45.455 0.00 0.00 35.17 3.41
296 297 3.899360 CCCATATTGGTTGCTTGATCCAT 59.101 43.478 0.00 0.00 35.17 3.41
297 298 5.078949 CCCATATTGGTTGCTTGATCCATA 58.921 41.667 0.00 0.00 35.17 2.74
298 299 5.718130 CCCATATTGGTTGCTTGATCCATAT 59.282 40.000 0.00 0.00 35.17 1.78
299 300 6.350696 CCCATATTGGTTGCTTGATCCATATG 60.351 42.308 0.00 0.00 35.17 1.78
300 301 6.350696 CCATATTGGTTGCTTGATCCATATGG 60.351 42.308 16.25 16.25 37.03 2.74
301 302 3.668141 TGGTTGCTTGATCCATATGGT 57.332 42.857 21.28 8.97 36.34 3.55
302 303 3.979911 TGGTTGCTTGATCCATATGGTT 58.020 40.909 21.28 13.44 36.34 3.67
303 304 5.122707 TGGTTGCTTGATCCATATGGTTA 57.877 39.130 21.28 3.43 36.34 2.85
304 305 4.887071 TGGTTGCTTGATCCATATGGTTAC 59.113 41.667 21.28 13.56 36.34 2.50
305 306 4.887071 GGTTGCTTGATCCATATGGTTACA 59.113 41.667 21.28 15.73 36.34 2.41
306 307 5.359576 GGTTGCTTGATCCATATGGTTACAA 59.640 40.000 21.28 20.72 36.34 2.41
307 308 6.040842 GGTTGCTTGATCCATATGGTTACAAT 59.959 38.462 21.28 7.11 36.34 2.71
308 309 6.882610 TGCTTGATCCATATGGTTACAATC 57.117 37.500 21.28 15.82 36.34 2.67
309 310 6.363882 TGCTTGATCCATATGGTTACAATCA 58.636 36.000 21.28 18.05 36.34 2.57
362 363 1.077169 TCTTGTGAGCAGGGTCCTAGA 59.923 52.381 0.00 0.00 0.00 2.43
454 465 4.707988 CTCTCGTGCAGAGCTAGC 57.292 61.111 6.62 6.62 46.44 3.42
508 521 4.270153 TGTCCTGGCCCTGGTCCT 62.270 66.667 6.55 0.00 0.00 3.85
545 558 1.339631 TGGTGAACATTCCATCGTCCC 60.340 52.381 0.00 0.00 0.00 4.46
768 785 0.386476 TTGAGCTTTGTTGCTGCCTG 59.614 50.000 0.00 0.00 44.17 4.85
818 840 9.573133 CTCTTTTCTTTGCTTTCTTCTTTTGTA 57.427 29.630 0.00 0.00 0.00 2.41
940 966 4.307258 GCGTGCTATACCGCGTTA 57.693 55.556 4.92 0.00 40.56 3.18
941 967 1.842028 GCGTGCTATACCGCGTTAC 59.158 57.895 4.92 0.00 40.56 2.50
942 968 1.543106 GCGTGCTATACCGCGTTACC 61.543 60.000 4.92 0.00 40.56 2.85
943 969 1.264141 CGTGCTATACCGCGTTACCG 61.264 60.000 4.92 0.00 34.30 4.02
958 984 5.233473 CGTTACCGCTTGATATTAACGAG 57.767 43.478 7.51 0.00 44.89 4.18
959 985 4.971830 CGTTACCGCTTGATATTAACGAGA 59.028 41.667 7.51 0.00 44.89 4.04
960 986 5.108480 CGTTACCGCTTGATATTAACGAGAC 60.108 44.000 7.51 2.50 44.89 3.36
961 987 4.380841 ACCGCTTGATATTAACGAGACA 57.619 40.909 0.00 0.00 0.00 3.41
962 988 4.945246 ACCGCTTGATATTAACGAGACAT 58.055 39.130 0.00 0.00 0.00 3.06
963 989 5.357257 ACCGCTTGATATTAACGAGACATT 58.643 37.500 0.00 0.00 0.00 2.71
964 990 6.509656 ACCGCTTGATATTAACGAGACATTA 58.490 36.000 0.00 0.00 0.00 1.90
965 991 7.152645 ACCGCTTGATATTAACGAGACATTAT 58.847 34.615 0.00 0.00 0.00 1.28
966 992 8.301720 ACCGCTTGATATTAACGAGACATTATA 58.698 33.333 0.00 0.00 0.00 0.98
967 993 8.584600 CCGCTTGATATTAACGAGACATTATAC 58.415 37.037 0.00 0.00 0.00 1.47
968 994 9.124807 CGCTTGATATTAACGAGACATTATACA 57.875 33.333 0.00 0.00 0.00 2.29
1000 1026 2.422597 TCACTGGTTTTAGCACATCCG 58.577 47.619 0.00 0.00 0.00 4.18
1032 1059 3.944422 AGTGTTACGTTCTTGTGCTTG 57.056 42.857 0.00 0.00 0.00 4.01
1050 1077 3.854784 GCTTGGTCAAATCAGCACTTGTC 60.855 47.826 0.00 0.00 0.00 3.18
1072 1099 1.854227 GGACTGGAATCGGAATCGTC 58.146 55.000 0.00 0.00 37.69 4.20
1073 1100 1.538419 GGACTGGAATCGGAATCGTCC 60.538 57.143 4.92 4.92 41.01 4.79
1074 1101 0.464452 ACTGGAATCGGAATCGTCCC 59.536 55.000 0.00 0.00 41.44 4.46
1075 1102 0.464036 CTGGAATCGGAATCGTCCCA 59.536 55.000 0.00 0.00 41.44 4.37
1076 1103 0.464036 TGGAATCGGAATCGTCCCAG 59.536 55.000 0.00 0.00 41.44 4.45
1077 1104 0.880718 GGAATCGGAATCGTCCCAGC 60.881 60.000 0.00 0.00 41.44 4.85
1088 1125 1.147191 TCGTCCCAGCCATCCTAGTAT 59.853 52.381 0.00 0.00 0.00 2.12
1090 1127 2.028930 CGTCCCAGCCATCCTAGTATTC 60.029 54.545 0.00 0.00 0.00 1.75
1112 1149 3.554324 CCGTTTTCATATACACCACGGAG 59.446 47.826 1.57 0.00 46.95 4.63
1129 1166 5.182760 CCACGGAGTCCCATACTAGTATAAC 59.817 48.000 15.03 12.93 41.61 1.89
1223 1265 1.337823 GCGAAACCCTGCTCTCAAGTA 60.338 52.381 0.00 0.00 0.00 2.24
1224 1266 2.870435 GCGAAACCCTGCTCTCAAGTAA 60.870 50.000 0.00 0.00 0.00 2.24
1225 1267 2.996621 CGAAACCCTGCTCTCAAGTAAG 59.003 50.000 0.00 0.00 0.00 2.34
1226 1268 3.339141 GAAACCCTGCTCTCAAGTAAGG 58.661 50.000 0.00 0.00 0.00 2.69
1227 1269 2.327325 ACCCTGCTCTCAAGTAAGGA 57.673 50.000 0.00 0.00 32.89 3.36
1228 1270 1.903183 ACCCTGCTCTCAAGTAAGGAC 59.097 52.381 0.00 0.00 32.89 3.85
1229 1271 1.208293 CCCTGCTCTCAAGTAAGGACC 59.792 57.143 0.00 0.00 32.89 4.46
1258 1300 3.496131 CGACGCCGGGAACAATGG 61.496 66.667 2.18 0.00 0.00 3.16
1494 1536 2.033911 TGCATCCGCCAGAAAGCA 59.966 55.556 0.00 0.00 37.28 3.91
1888 1949 1.604278 GTCCACAAGAACAGGTTGCTC 59.396 52.381 0.00 0.00 0.00 4.26
1975 2036 2.440980 GGCAGAGCCCCATGGTTC 60.441 66.667 11.73 5.53 44.06 3.62
1976 2037 2.440980 GCAGAGCCCCATGGTTCC 60.441 66.667 11.73 0.00 42.53 3.62
1977 2038 2.988839 GCAGAGCCCCATGGTTCCT 61.989 63.158 11.73 3.23 42.53 3.36
1978 2039 1.077212 CAGAGCCCCATGGTTCCTG 60.077 63.158 11.73 8.45 42.53 3.86
1979 2040 2.440980 GAGCCCCATGGTTCCTGC 60.441 66.667 11.73 5.23 35.94 4.85
1980 2041 4.431131 AGCCCCATGGTTCCTGCG 62.431 66.667 11.73 0.00 0.00 5.18
2654 2868 2.076863 GTTCGTGAGGTTCTTGGATGG 58.923 52.381 0.00 0.00 0.00 3.51
2661 2875 1.092345 GGTTCTTGGATGGCGAGCTC 61.092 60.000 2.73 2.73 0.00 4.09
2677 2891 1.218230 GCTCGAAATAGCGCCAGAGG 61.218 60.000 2.29 0.00 31.76 3.69
2678 2892 0.385751 CTCGAAATAGCGCCAGAGGA 59.614 55.000 2.29 0.00 0.00 3.71
2679 2893 0.385751 TCGAAATAGCGCCAGAGGAG 59.614 55.000 2.29 0.00 0.00 3.69
2680 2894 0.385751 CGAAATAGCGCCAGAGGAGA 59.614 55.000 2.29 0.00 0.00 3.71
2681 2895 1.859383 GAAATAGCGCCAGAGGAGAC 58.141 55.000 2.29 0.00 0.00 3.36
2682 2896 1.137086 GAAATAGCGCCAGAGGAGACA 59.863 52.381 2.29 0.00 0.00 3.41
2683 2897 0.749649 AATAGCGCCAGAGGAGACAG 59.250 55.000 2.29 0.00 0.00 3.51
2684 2898 0.106469 ATAGCGCCAGAGGAGACAGA 60.106 55.000 2.29 0.00 0.00 3.41
2685 2899 0.323451 TAGCGCCAGAGGAGACAGAA 60.323 55.000 2.29 0.00 0.00 3.02
2686 2900 1.153667 GCGCCAGAGGAGACAGAAG 60.154 63.158 0.00 0.00 0.00 2.85
2687 2901 1.599606 GCGCCAGAGGAGACAGAAGA 61.600 60.000 0.00 0.00 0.00 2.87
2688 2902 0.172352 CGCCAGAGGAGACAGAAGAC 59.828 60.000 0.00 0.00 0.00 3.01
2689 2903 0.172352 GCCAGAGGAGACAGAAGACG 59.828 60.000 0.00 0.00 0.00 4.18
2690 2904 1.540267 CCAGAGGAGACAGAAGACGT 58.460 55.000 0.00 0.00 0.00 4.34
2691 2905 2.712709 CCAGAGGAGACAGAAGACGTA 58.287 52.381 0.00 0.00 0.00 3.57
2692 2906 2.680841 CCAGAGGAGACAGAAGACGTAG 59.319 54.545 0.00 0.00 0.00 3.51
2693 2907 3.601435 CAGAGGAGACAGAAGACGTAGA 58.399 50.000 0.00 0.00 0.00 2.59
2694 2908 4.004314 CAGAGGAGACAGAAGACGTAGAA 58.996 47.826 0.00 0.00 0.00 2.10
2695 2909 4.094294 CAGAGGAGACAGAAGACGTAGAAG 59.906 50.000 0.00 0.00 0.00 2.85
2696 2910 3.349022 AGGAGACAGAAGACGTAGAAGG 58.651 50.000 0.00 0.00 0.00 3.46
2697 2911 2.159352 GGAGACAGAAGACGTAGAAGGC 60.159 54.545 0.00 0.00 0.00 4.35
2698 2912 2.488545 GAGACAGAAGACGTAGAAGGCA 59.511 50.000 0.00 0.00 0.00 4.75
2699 2913 2.891580 AGACAGAAGACGTAGAAGGCAA 59.108 45.455 0.00 0.00 0.00 4.52
2700 2914 3.057174 AGACAGAAGACGTAGAAGGCAAG 60.057 47.826 0.00 0.00 0.00 4.01
2701 2915 2.028930 ACAGAAGACGTAGAAGGCAAGG 60.029 50.000 0.00 0.00 0.00 3.61
2702 2916 1.066787 AGAAGACGTAGAAGGCAAGGC 60.067 52.381 0.00 0.00 0.00 4.35
2712 2926 2.909965 GGCAAGGCCGTCCAACAA 60.910 61.111 0.00 0.00 39.62 2.83
2713 2927 2.644992 GCAAGGCCGTCCAACAAG 59.355 61.111 0.00 0.00 33.74 3.16
2714 2928 1.896660 GCAAGGCCGTCCAACAAGA 60.897 57.895 0.00 0.00 33.74 3.02
2715 2929 1.244019 GCAAGGCCGTCCAACAAGAT 61.244 55.000 0.00 0.00 33.74 2.40
2716 2930 0.523072 CAAGGCCGTCCAACAAGATG 59.477 55.000 0.00 0.00 33.74 2.90
2717 2931 0.609131 AAGGCCGTCCAACAAGATGG 60.609 55.000 0.00 0.00 44.54 3.51
2719 2933 3.177600 CCGTCCAACAAGATGGCG 58.822 61.111 6.33 6.33 40.46 5.69
2720 2934 2.398554 CCGTCCAACAAGATGGCGG 61.399 63.158 14.10 14.10 46.12 6.13
2721 2935 1.671054 CGTCCAACAAGATGGCGGT 60.671 57.895 5.69 0.00 40.46 5.68
2722 2936 1.875963 GTCCAACAAGATGGCGGTG 59.124 57.895 0.00 0.00 40.46 4.94
2723 2937 0.605319 GTCCAACAAGATGGCGGTGA 60.605 55.000 0.00 0.00 40.46 4.02
2724 2938 0.321564 TCCAACAAGATGGCGGTGAG 60.322 55.000 0.00 0.00 40.46 3.51
2725 2939 1.308069 CCAACAAGATGGCGGTGAGG 61.308 60.000 0.00 0.00 32.78 3.86
2726 2940 0.321564 CAACAAGATGGCGGTGAGGA 60.322 55.000 0.00 0.00 0.00 3.71
2727 2941 0.036010 AACAAGATGGCGGTGAGGAG 60.036 55.000 0.00 0.00 0.00 3.69
2728 2942 1.153289 CAAGATGGCGGTGAGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
2729 2943 1.306141 AAGATGGCGGTGAGGAGGA 60.306 57.895 0.00 0.00 0.00 3.71
2730 2944 1.617947 AAGATGGCGGTGAGGAGGAC 61.618 60.000 0.00 0.00 0.00 3.85
2731 2945 3.432051 GATGGCGGTGAGGAGGACG 62.432 68.421 0.00 0.00 0.00 4.79
2732 2946 3.957435 ATGGCGGTGAGGAGGACGA 62.957 63.158 0.00 0.00 0.00 4.20
2733 2947 3.827898 GGCGGTGAGGAGGACGAG 61.828 72.222 0.00 0.00 0.00 4.18
2734 2948 4.500116 GCGGTGAGGAGGACGAGC 62.500 72.222 0.00 0.00 0.00 5.03
2735 2949 3.062466 CGGTGAGGAGGACGAGCA 61.062 66.667 0.00 0.00 0.00 4.26
2736 2950 2.888863 GGTGAGGAGGACGAGCAG 59.111 66.667 0.00 0.00 0.00 4.24
2737 2951 2.716017 GGTGAGGAGGACGAGCAGG 61.716 68.421 0.00 0.00 0.00 4.85
2738 2952 1.679305 GTGAGGAGGACGAGCAGGA 60.679 63.158 0.00 0.00 0.00 3.86
2739 2953 1.379176 TGAGGAGGACGAGCAGGAG 60.379 63.158 0.00 0.00 0.00 3.69
2740 2954 2.043450 AGGAGGACGAGCAGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
2741 2955 2.043852 GGAGGACGAGCAGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
2742 2956 2.124693 GGAGGACGAGCAGGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
2743 2957 2.043450 AGGACGAGCAGGAGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
2744 2958 3.151022 GGACGAGCAGGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
2745 2959 3.844090 GACGAGCAGGAGGAGGGC 61.844 72.222 0.00 0.00 0.00 5.19
2748 2962 3.844090 GAGCAGGAGGAGGGCGAC 61.844 72.222 0.00 0.00 0.00 5.19
2751 2965 3.827898 CAGGAGGAGGGCGACGAC 61.828 72.222 0.00 0.00 0.00 4.34
2765 2979 2.126965 CGACGACTTCGCGAGGTT 60.127 61.111 25.34 10.50 41.87 3.50
2766 2980 1.728426 CGACGACTTCGCGAGGTTT 60.728 57.895 25.34 15.19 41.87 3.27
2767 2981 1.273455 CGACGACTTCGCGAGGTTTT 61.273 55.000 25.34 14.82 41.87 2.43
2768 2982 0.857287 GACGACTTCGCGAGGTTTTT 59.143 50.000 25.34 12.25 44.43 1.94
2769 2983 0.580104 ACGACTTCGCGAGGTTTTTG 59.420 50.000 25.34 16.71 44.43 2.44
2770 2984 0.110823 CGACTTCGCGAGGTTTTTGG 60.111 55.000 25.34 8.80 0.00 3.28
2771 2985 1.223187 GACTTCGCGAGGTTTTTGGA 58.777 50.000 25.34 0.00 0.00 3.53
2772 2986 1.804748 GACTTCGCGAGGTTTTTGGAT 59.195 47.619 25.34 0.00 0.00 3.41
2773 2987 1.535462 ACTTCGCGAGGTTTTTGGATG 59.465 47.619 19.10 0.00 0.00 3.51
2774 2988 1.804151 CTTCGCGAGGTTTTTGGATGA 59.196 47.619 9.59 0.00 0.00 2.92
2775 2989 1.438651 TCGCGAGGTTTTTGGATGAG 58.561 50.000 3.71 0.00 0.00 2.90
2776 2990 0.447801 CGCGAGGTTTTTGGATGAGG 59.552 55.000 0.00 0.00 0.00 3.86
2777 2991 1.821216 GCGAGGTTTTTGGATGAGGA 58.179 50.000 0.00 0.00 0.00 3.71
2778 2992 1.740025 GCGAGGTTTTTGGATGAGGAG 59.260 52.381 0.00 0.00 0.00 3.69
2779 2993 1.740025 CGAGGTTTTTGGATGAGGAGC 59.260 52.381 0.00 0.00 0.00 4.70
2780 2994 2.616510 CGAGGTTTTTGGATGAGGAGCT 60.617 50.000 0.00 0.00 0.00 4.09
2781 2995 3.425659 GAGGTTTTTGGATGAGGAGCTT 58.574 45.455 0.00 0.00 0.00 3.74
2782 2996 3.160269 AGGTTTTTGGATGAGGAGCTTG 58.840 45.455 0.00 0.00 0.00 4.01
2783 2997 3.157087 GGTTTTTGGATGAGGAGCTTGA 58.843 45.455 0.00 0.00 0.00 3.02
2784 2998 3.573967 GGTTTTTGGATGAGGAGCTTGAA 59.426 43.478 0.00 0.00 0.00 2.69
2785 2999 4.039124 GGTTTTTGGATGAGGAGCTTGAAA 59.961 41.667 0.00 0.00 0.00 2.69
2786 3000 5.279657 GGTTTTTGGATGAGGAGCTTGAAAT 60.280 40.000 0.00 0.00 0.00 2.17
2787 3001 6.071391 GGTTTTTGGATGAGGAGCTTGAAATA 60.071 38.462 0.00 0.00 0.00 1.40
2788 3002 6.764308 TTTTGGATGAGGAGCTTGAAATAG 57.236 37.500 0.00 0.00 0.00 1.73
2789 3003 3.813443 TGGATGAGGAGCTTGAAATAGC 58.187 45.455 0.00 0.00 41.53 2.97
2790 3004 2.805099 GGATGAGGAGCTTGAAATAGCG 59.195 50.000 0.00 0.00 45.82 4.26
2791 3005 1.656652 TGAGGAGCTTGAAATAGCGC 58.343 50.000 0.00 0.00 45.82 5.92
2795 3009 1.656652 GAGCTTGAAATAGCGCCAGA 58.343 50.000 2.29 0.00 45.82 3.86
2796 3010 1.596727 GAGCTTGAAATAGCGCCAGAG 59.403 52.381 2.29 0.00 45.82 3.35
2844 3178 2.808157 TCGAAGAAGATGACGACGAG 57.192 50.000 0.00 0.00 0.00 4.18
2846 3180 1.397343 CGAAGAAGATGACGACGAGGA 59.603 52.381 0.00 0.00 0.00 3.71
2847 3181 2.537931 CGAAGAAGATGACGACGAGGAG 60.538 54.545 0.00 0.00 0.00 3.69
2849 3183 1.065345 AGAAGATGACGACGAGGAGGA 60.065 52.381 0.00 0.00 0.00 3.71
2854 3191 1.078285 GACGACGAGGAGGAGAGGT 60.078 63.158 0.00 0.00 0.00 3.85
2855 3192 0.677414 GACGACGAGGAGGAGAGGTT 60.677 60.000 0.00 0.00 0.00 3.50
2881 3218 2.386661 ACCTTGTGGTGATCGTGATC 57.613 50.000 2.86 2.86 46.51 2.92
2882 3219 1.623311 ACCTTGTGGTGATCGTGATCA 59.377 47.619 8.43 8.43 46.51 2.92
2911 3259 1.276138 TGCCTGCGATGAAGAAGAAGA 59.724 47.619 0.00 0.00 0.00 2.87
2912 3260 2.289631 TGCCTGCGATGAAGAAGAAGAA 60.290 45.455 0.00 0.00 0.00 2.52
2913 3261 2.351111 GCCTGCGATGAAGAAGAAGAAG 59.649 50.000 0.00 0.00 0.00 2.85
2914 3262 2.935201 CCTGCGATGAAGAAGAAGAAGG 59.065 50.000 0.00 0.00 0.00 3.46
2919 3267 4.186926 CGATGAAGAAGAAGAAGGCATCA 58.813 43.478 0.00 0.00 32.41 3.07
2965 3322 1.269958 TCACTCCTGTCCTGTGATGG 58.730 55.000 0.00 0.00 36.03 3.51
2978 3335 3.392616 CCTGTGATGGGTAGCTAGGATTT 59.607 47.826 0.00 0.00 0.00 2.17
2979 3336 4.141390 CCTGTGATGGGTAGCTAGGATTTT 60.141 45.833 0.00 0.00 0.00 1.82
2980 3337 5.440610 CTGTGATGGGTAGCTAGGATTTTT 58.559 41.667 0.00 0.00 0.00 1.94
3104 3481 7.075741 GTGGCACGACATATATATGAAAAACC 58.924 38.462 26.05 19.93 37.15 3.27
3127 3504 7.830739 ACCATATTTTCTGTTCATCCTTGTTC 58.169 34.615 0.00 0.00 0.00 3.18
3128 3505 7.671398 ACCATATTTTCTGTTCATCCTTGTTCT 59.329 33.333 0.00 0.00 0.00 3.01
3157 3597 8.943002 CCTGTTTTGTCGGATTTATTTACTACT 58.057 33.333 0.00 0.00 0.00 2.57
3245 3686 3.782042 GGCGACGATGGTGAAGAC 58.218 61.111 0.00 0.00 0.00 3.01
3275 3716 2.421619 CTCACCAAGCCTCTTTCAGAC 58.578 52.381 0.00 0.00 0.00 3.51
3277 3718 1.140312 ACCAAGCCTCTTTCAGACCA 58.860 50.000 0.00 0.00 0.00 4.02
3280 3721 2.149578 CAAGCCTCTTTCAGACCACAG 58.850 52.381 0.00 0.00 0.00 3.66
3287 3728 5.163405 GCCTCTTTCAGACCACAGTGATATA 60.163 44.000 0.62 0.00 0.00 0.86
3288 3729 6.630413 GCCTCTTTCAGACCACAGTGATATAA 60.630 42.308 0.62 0.00 0.00 0.98
3342 3807 8.306038 CCAAATTCTTGTGGAATGAATACAGAA 58.694 33.333 0.00 0.00 43.17 3.02
3367 3832 6.833839 TGTGTTTTATCACGGCTGTAAATAC 58.166 36.000 0.00 4.78 40.74 1.89
3415 3906 7.432869 TGAATTCCTTTCATGTTTACTTGTGG 58.567 34.615 2.27 0.00 39.44 4.17
3416 3907 6.976934 ATTCCTTTCATGTTTACTTGTGGT 57.023 33.333 0.00 0.00 0.00 4.16
3417 3908 6.783708 TTCCTTTCATGTTTACTTGTGGTT 57.216 33.333 0.00 0.00 0.00 3.67
3418 3909 7.883391 TTCCTTTCATGTTTACTTGTGGTTA 57.117 32.000 0.00 0.00 0.00 2.85
3419 3910 7.504924 TCCTTTCATGTTTACTTGTGGTTAG 57.495 36.000 0.00 0.00 0.00 2.34
3420 3911 7.057894 TCCTTTCATGTTTACTTGTGGTTAGT 58.942 34.615 0.00 0.00 0.00 2.24
3485 3976 1.677552 CTCACGGCCTTAGGTTGGT 59.322 57.895 0.00 0.00 0.00 3.67
3514 4005 3.064271 GCGGATGCAAACGGTTATCTTAA 59.936 43.478 14.06 0.00 42.15 1.85
3515 4006 4.261031 GCGGATGCAAACGGTTATCTTAAT 60.261 41.667 14.06 0.00 42.15 1.40
3516 4007 5.732247 GCGGATGCAAACGGTTATCTTAATT 60.732 40.000 14.06 0.00 42.15 1.40
3517 4008 6.512091 GCGGATGCAAACGGTTATCTTAATTA 60.512 38.462 14.06 0.00 42.15 1.40
3581 4104 7.337167 AGCAGGACCTATATGATTTCATCATC 58.663 38.462 2.44 0.00 46.62 2.92
3682 4220 6.246420 ACTGAAACAGACAGCATAAATGAC 57.754 37.500 5.76 0.00 38.74 3.06
3689 4227 5.641209 ACAGACAGCATAAATGACAGACTTC 59.359 40.000 0.00 0.00 0.00 3.01
3691 4229 4.820897 ACAGCATAAATGACAGACTTCGA 58.179 39.130 0.00 0.00 0.00 3.71
3697 4235 2.148916 ATGACAGACTTCGACGCAAA 57.851 45.000 0.00 0.00 0.00 3.68
3809 4352 2.113774 CAGCAGCCTGGTTGTCCA 59.886 61.111 12.30 0.00 42.05 4.02
3857 4400 2.980586 TCAAACGACAAACAAGATGCG 58.019 42.857 0.00 0.00 0.00 4.73
3885 4428 0.900647 AGTCAGGGTCTTCAGGGACG 60.901 60.000 0.00 0.00 37.12 4.79
3975 4518 3.802948 ATAACCGCAGAGTTCCTACTG 57.197 47.619 0.00 0.00 33.84 2.74
3991 4534 2.154567 ACTGCCGTAACTAGGATGGA 57.845 50.000 8.90 0.00 0.00 3.41
3992 4535 2.679082 ACTGCCGTAACTAGGATGGAT 58.321 47.619 8.90 0.00 0.00 3.41
4018 4561 5.128919 AGATCACAAATATGCCCAACTCTC 58.871 41.667 0.00 0.00 0.00 3.20
4019 4562 4.574674 TCACAAATATGCCCAACTCTCT 57.425 40.909 0.00 0.00 0.00 3.10
4020 4563 4.517285 TCACAAATATGCCCAACTCTCTC 58.483 43.478 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.691860 AGCTTGTCGGAATCATTTTCTG 57.308 40.909 0.00 0.00 0.00 3.02
1 2 4.761739 TCAAGCTTGTCGGAATCATTTTCT 59.238 37.500 25.19 0.00 0.00 2.52
3 4 4.321230 GGTCAAGCTTGTCGGAATCATTTT 60.321 41.667 25.19 0.00 0.00 1.82
4 5 3.191371 GGTCAAGCTTGTCGGAATCATTT 59.809 43.478 25.19 0.00 0.00 2.32
5 6 2.749621 GGTCAAGCTTGTCGGAATCATT 59.250 45.455 25.19 0.00 0.00 2.57
6 7 2.359900 GGTCAAGCTTGTCGGAATCAT 58.640 47.619 25.19 0.00 0.00 2.45
7 8 1.610624 GGGTCAAGCTTGTCGGAATCA 60.611 52.381 25.19 1.00 0.00 2.57
10 11 1.072505 GGGGTCAAGCTTGTCGGAA 59.927 57.895 25.19 3.36 0.00 4.30
12 13 2.725203 TTCGGGGTCAAGCTTGTCGG 62.725 60.000 25.19 18.24 0.00 4.79
13 14 0.882927 TTTCGGGGTCAAGCTTGTCG 60.883 55.000 25.19 21.79 0.00 4.35
14 15 0.591659 GTTTCGGGGTCAAGCTTGTC 59.408 55.000 25.19 19.69 0.00 3.18
15 16 0.182775 AGTTTCGGGGTCAAGCTTGT 59.817 50.000 25.19 0.00 0.00 3.16
16 17 0.593128 CAGTTTCGGGGTCAAGCTTG 59.407 55.000 20.81 20.81 0.00 4.01
17 18 1.172812 GCAGTTTCGGGGTCAAGCTT 61.173 55.000 0.00 0.00 0.00 3.74
18 19 1.600916 GCAGTTTCGGGGTCAAGCT 60.601 57.895 0.00 0.00 0.00 3.74
20 21 2.966309 GCGCAGTTTCGGGGTCAAG 61.966 63.158 0.30 0.00 0.00 3.02
21 22 2.975799 GCGCAGTTTCGGGGTCAA 60.976 61.111 0.30 0.00 0.00 3.18
22 23 4.243008 TGCGCAGTTTCGGGGTCA 62.243 61.111 5.66 0.00 0.00 4.02
23 24 3.723348 GTGCGCAGTTTCGGGGTC 61.723 66.667 12.22 0.00 0.00 4.46
24 25 4.555709 TGTGCGCAGTTTCGGGGT 62.556 61.111 12.22 0.00 0.00 4.95
25 26 3.726517 CTGTGCGCAGTTTCGGGG 61.727 66.667 19.30 0.00 37.92 5.73
34 35 1.146041 AAGACCTTCACTGTGCGCA 59.854 52.632 5.66 5.66 0.00 6.09
35 36 1.160329 ACAAGACCTTCACTGTGCGC 61.160 55.000 0.00 0.00 0.00 6.09
36 37 0.861837 GACAAGACCTTCACTGTGCG 59.138 55.000 2.12 0.00 0.00 5.34
37 38 1.599542 GTGACAAGACCTTCACTGTGC 59.400 52.381 2.12 0.00 39.30 4.57
42 43 6.031751 AGATTCTAGTGACAAGACCTTCAC 57.968 41.667 0.00 0.00 42.17 3.18
43 44 7.201741 CGATAGATTCTAGTGACAAGACCTTCA 60.202 40.741 0.00 0.00 39.76 3.02
44 45 7.136119 CGATAGATTCTAGTGACAAGACCTTC 58.864 42.308 0.00 0.00 39.76 3.46
45 46 6.039941 CCGATAGATTCTAGTGACAAGACCTT 59.960 42.308 0.00 0.00 39.76 3.50
46 47 5.533154 CCGATAGATTCTAGTGACAAGACCT 59.467 44.000 0.00 0.00 39.76 3.85
47 48 5.764131 CCGATAGATTCTAGTGACAAGACC 58.236 45.833 0.00 0.00 39.76 3.85
48 49 5.009210 AGCCGATAGATTCTAGTGACAAGAC 59.991 44.000 0.00 0.00 39.76 3.01
49 50 5.133941 AGCCGATAGATTCTAGTGACAAGA 58.866 41.667 0.00 0.00 39.76 3.02
50 51 5.446143 AGCCGATAGATTCTAGTGACAAG 57.554 43.478 0.00 0.00 39.76 3.16
51 52 4.278669 GGAGCCGATAGATTCTAGTGACAA 59.721 45.833 0.00 0.00 39.76 3.18
52 53 3.821600 GGAGCCGATAGATTCTAGTGACA 59.178 47.826 0.00 0.00 39.76 3.58
53 54 3.821600 TGGAGCCGATAGATTCTAGTGAC 59.178 47.826 0.00 0.00 39.76 3.67
54 55 4.100279 TGGAGCCGATAGATTCTAGTGA 57.900 45.455 0.00 0.00 39.76 3.41
55 56 4.551388 GTTGGAGCCGATAGATTCTAGTG 58.449 47.826 0.00 0.00 39.76 2.74
56 57 3.574826 GGTTGGAGCCGATAGATTCTAGT 59.425 47.826 0.00 0.00 39.76 2.57
57 58 3.829601 AGGTTGGAGCCGATAGATTCTAG 59.170 47.826 0.00 0.00 39.76 2.43
58 59 3.574396 CAGGTTGGAGCCGATAGATTCTA 59.426 47.826 0.00 0.00 39.76 2.10
59 60 2.366916 CAGGTTGGAGCCGATAGATTCT 59.633 50.000 0.00 0.00 39.76 2.40
60 61 2.548920 CCAGGTTGGAGCCGATAGATTC 60.549 54.545 0.00 0.00 40.96 2.52
61 62 1.417890 CCAGGTTGGAGCCGATAGATT 59.582 52.381 0.00 0.00 40.96 2.40
62 63 1.051812 CCAGGTTGGAGCCGATAGAT 58.948 55.000 0.00 0.00 40.96 1.98
63 64 0.032515 TCCAGGTTGGAGCCGATAGA 60.033 55.000 0.00 0.00 42.67 1.98
64 65 2.516448 TCCAGGTTGGAGCCGATAG 58.484 57.895 0.00 0.00 42.67 2.08
65 66 4.798585 TCCAGGTTGGAGCCGATA 57.201 55.556 0.00 0.00 42.67 2.92
72 73 3.419793 CAACTTGCTCCAGGTTGGA 57.580 52.632 11.08 0.00 44.16 3.53
75 76 1.212935 ACTGACAACTTGCTCCAGGTT 59.787 47.619 9.73 0.00 34.04 3.50
76 77 0.839946 ACTGACAACTTGCTCCAGGT 59.160 50.000 9.73 0.00 0.00 4.00
77 78 1.972872 AACTGACAACTTGCTCCAGG 58.027 50.000 9.73 0.00 0.00 4.45
78 79 2.291741 GGAAACTGACAACTTGCTCCAG 59.708 50.000 0.00 0.00 0.00 3.86
79 80 2.092429 AGGAAACTGACAACTTGCTCCA 60.092 45.455 0.00 0.00 41.13 3.86
80 81 2.576615 AGGAAACTGACAACTTGCTCC 58.423 47.619 0.00 0.00 41.13 4.70
93 94 2.039084 ACGGAAAGCATCTCAGGAAACT 59.961 45.455 0.00 0.00 46.44 2.66
94 95 2.160417 CACGGAAAGCATCTCAGGAAAC 59.840 50.000 0.00 0.00 0.00 2.78
95 96 2.426522 CACGGAAAGCATCTCAGGAAA 58.573 47.619 0.00 0.00 0.00 3.13
96 97 1.945819 GCACGGAAAGCATCTCAGGAA 60.946 52.381 0.00 0.00 0.00 3.36
97 98 0.391661 GCACGGAAAGCATCTCAGGA 60.392 55.000 0.00 0.00 0.00 3.86
98 99 1.372087 GGCACGGAAAGCATCTCAGG 61.372 60.000 0.00 0.00 0.00 3.86
99 100 0.392193 AGGCACGGAAAGCATCTCAG 60.392 55.000 0.00 0.00 0.00 3.35
100 101 0.674581 CAGGCACGGAAAGCATCTCA 60.675 55.000 0.00 0.00 0.00 3.27
101 102 1.372087 CCAGGCACGGAAAGCATCTC 61.372 60.000 0.00 0.00 0.00 2.75
102 103 1.377725 CCAGGCACGGAAAGCATCT 60.378 57.895 0.00 0.00 0.00 2.90
103 104 1.372087 CTCCAGGCACGGAAAGCATC 61.372 60.000 0.00 0.00 33.65 3.91
104 105 1.377725 CTCCAGGCACGGAAAGCAT 60.378 57.895 0.00 0.00 33.65 3.79
105 106 2.032528 CTCCAGGCACGGAAAGCA 59.967 61.111 0.00 0.00 33.65 3.91
106 107 1.301677 CTTCTCCAGGCACGGAAAGC 61.302 60.000 0.00 0.00 33.65 3.51
107 108 1.301677 GCTTCTCCAGGCACGGAAAG 61.302 60.000 0.00 5.67 33.65 2.62
108 109 1.302511 GCTTCTCCAGGCACGGAAA 60.303 57.895 0.00 0.00 33.65 3.13
109 110 0.902984 TAGCTTCTCCAGGCACGGAA 60.903 55.000 0.00 0.00 33.65 4.30
110 111 0.687757 ATAGCTTCTCCAGGCACGGA 60.688 55.000 0.00 0.00 0.00 4.69
111 112 1.040646 TATAGCTTCTCCAGGCACGG 58.959 55.000 0.00 0.00 0.00 4.94
112 113 4.677584 GATATATAGCTTCTCCAGGCACG 58.322 47.826 0.00 0.00 0.00 5.34
113 114 4.399618 TCGATATATAGCTTCTCCAGGCAC 59.600 45.833 0.00 0.00 0.00 5.01
114 115 4.600062 TCGATATATAGCTTCTCCAGGCA 58.400 43.478 0.00 0.00 0.00 4.75
115 116 4.037446 CCTCGATATATAGCTTCTCCAGGC 59.963 50.000 0.00 0.00 0.00 4.85
116 117 5.067153 CACCTCGATATATAGCTTCTCCAGG 59.933 48.000 0.00 0.00 0.00 4.45
117 118 5.883115 TCACCTCGATATATAGCTTCTCCAG 59.117 44.000 0.00 0.00 0.00 3.86
118 119 5.816682 TCACCTCGATATATAGCTTCTCCA 58.183 41.667 0.00 0.00 0.00 3.86
119 120 6.320164 ACATCACCTCGATATATAGCTTCTCC 59.680 42.308 0.00 0.00 31.20 3.71
120 121 7.328277 ACATCACCTCGATATATAGCTTCTC 57.672 40.000 0.00 0.00 31.20 2.87
121 122 7.147983 GGAACATCACCTCGATATATAGCTTCT 60.148 40.741 0.00 0.00 31.20 2.85
122 123 6.975772 GGAACATCACCTCGATATATAGCTTC 59.024 42.308 0.00 0.00 31.20 3.86
123 124 6.665680 AGGAACATCACCTCGATATATAGCTT 59.334 38.462 0.00 0.00 31.43 3.74
124 125 6.191315 AGGAACATCACCTCGATATATAGCT 58.809 40.000 0.00 0.00 31.43 3.32
125 126 6.458232 AGGAACATCACCTCGATATATAGC 57.542 41.667 0.00 0.00 31.43 2.97
126 127 7.976734 GGAAAGGAACATCACCTCGATATATAG 59.023 40.741 0.00 0.00 36.67 1.31
127 128 7.674348 AGGAAAGGAACATCACCTCGATATATA 59.326 37.037 0.00 0.00 36.67 0.86
128 129 6.498651 AGGAAAGGAACATCACCTCGATATAT 59.501 38.462 0.00 0.00 36.67 0.86
129 130 5.839063 AGGAAAGGAACATCACCTCGATATA 59.161 40.000 0.00 0.00 36.67 0.86
130 131 4.656112 AGGAAAGGAACATCACCTCGATAT 59.344 41.667 0.00 0.00 36.67 1.63
131 132 4.030913 AGGAAAGGAACATCACCTCGATA 58.969 43.478 0.00 0.00 36.67 2.92
132 133 2.840651 AGGAAAGGAACATCACCTCGAT 59.159 45.455 0.00 0.00 36.67 3.59
133 134 2.028112 CAGGAAAGGAACATCACCTCGA 60.028 50.000 0.00 0.00 36.67 4.04
134 135 2.289694 ACAGGAAAGGAACATCACCTCG 60.290 50.000 0.00 0.00 36.67 4.63
135 136 3.425162 ACAGGAAAGGAACATCACCTC 57.575 47.619 0.00 0.00 36.67 3.85
136 137 3.884037 AACAGGAAAGGAACATCACCT 57.116 42.857 0.00 0.00 39.69 4.00
137 138 6.015434 ACATTTAACAGGAAAGGAACATCACC 60.015 38.462 0.00 0.00 0.00 4.02
138 139 6.981722 ACATTTAACAGGAAAGGAACATCAC 58.018 36.000 0.00 0.00 0.00 3.06
139 140 7.595819 AACATTTAACAGGAAAGGAACATCA 57.404 32.000 0.00 0.00 0.00 3.07
140 141 9.406828 GTTAACATTTAACAGGAAAGGAACATC 57.593 33.333 0.00 0.00 0.00 3.06
141 142 8.364894 GGTTAACATTTAACAGGAAAGGAACAT 58.635 33.333 8.10 0.00 0.00 2.71
142 143 7.342284 TGGTTAACATTTAACAGGAAAGGAACA 59.658 33.333 8.10 0.00 0.00 3.18
143 144 7.718525 TGGTTAACATTTAACAGGAAAGGAAC 58.281 34.615 8.10 0.00 0.00 3.62
144 145 7.899648 TGGTTAACATTTAACAGGAAAGGAA 57.100 32.000 8.10 0.00 0.00 3.36
145 146 9.589461 TTATGGTTAACATTTAACAGGAAAGGA 57.411 29.630 8.10 0.00 41.03 3.36
146 147 9.855021 CTTATGGTTAACATTTAACAGGAAAGG 57.145 33.333 8.10 0.00 41.03 3.11
150 151 9.667107 CTCTCTTATGGTTAACATTTAACAGGA 57.333 33.333 8.10 0.00 41.03 3.86
151 152 9.449719 ACTCTCTTATGGTTAACATTTAACAGG 57.550 33.333 8.10 0.00 41.03 4.00
159 160 9.520515 ACAATTGAACTCTCTTATGGTTAACAT 57.479 29.630 13.59 2.18 43.68 2.71
160 161 8.783093 CACAATTGAACTCTCTTATGGTTAACA 58.217 33.333 13.59 0.00 0.00 2.41
161 162 8.999431 TCACAATTGAACTCTCTTATGGTTAAC 58.001 33.333 13.59 0.00 0.00 2.01
162 163 8.999431 GTCACAATTGAACTCTCTTATGGTTAA 58.001 33.333 13.59 0.00 31.90 2.01
163 164 8.154203 TGTCACAATTGAACTCTCTTATGGTTA 58.846 33.333 13.59 0.00 31.90 2.85
164 165 6.998074 TGTCACAATTGAACTCTCTTATGGTT 59.002 34.615 13.59 0.00 31.90 3.67
165 166 6.428159 GTGTCACAATTGAACTCTCTTATGGT 59.572 38.462 13.59 0.00 31.90 3.55
166 167 6.128172 GGTGTCACAATTGAACTCTCTTATGG 60.128 42.308 13.59 0.00 31.90 2.74
167 168 6.652481 AGGTGTCACAATTGAACTCTCTTATG 59.348 38.462 13.59 0.00 31.90 1.90
168 169 6.773638 AGGTGTCACAATTGAACTCTCTTAT 58.226 36.000 13.59 0.00 31.90 1.73
169 170 6.174720 AGGTGTCACAATTGAACTCTCTTA 57.825 37.500 13.59 0.00 31.90 2.10
170 171 5.041191 AGGTGTCACAATTGAACTCTCTT 57.959 39.130 13.59 0.26 31.90 2.85
171 172 4.696479 AGGTGTCACAATTGAACTCTCT 57.304 40.909 13.59 7.44 31.90 3.10
172 173 5.757850 AAAGGTGTCACAATTGAACTCTC 57.242 39.130 13.59 5.62 31.90 3.20
173 174 6.530019 AAAAAGGTGTCACAATTGAACTCT 57.470 33.333 13.59 8.80 31.90 3.24
205 206 9.671279 TCAGAAATCATAGTACATTGTCATTGT 57.329 29.630 5.73 5.73 0.00 2.71
208 209 9.334947 CCTTCAGAAATCATAGTACATTGTCAT 57.665 33.333 0.00 0.00 0.00 3.06
209 210 8.539544 TCCTTCAGAAATCATAGTACATTGTCA 58.460 33.333 0.00 0.00 0.00 3.58
210 211 8.948631 TCCTTCAGAAATCATAGTACATTGTC 57.051 34.615 0.00 0.00 0.00 3.18
211 212 9.911788 AATCCTTCAGAAATCATAGTACATTGT 57.088 29.630 0.00 0.00 0.00 2.71
218 219 8.964772 CCAAAAGAATCCTTCAGAAATCATAGT 58.035 33.333 0.00 0.00 0.00 2.12
219 220 9.182214 TCCAAAAGAATCCTTCAGAAATCATAG 57.818 33.333 0.00 0.00 0.00 2.23
220 221 9.182214 CTCCAAAAGAATCCTTCAGAAATCATA 57.818 33.333 0.00 0.00 0.00 2.15
221 222 7.123847 CCTCCAAAAGAATCCTTCAGAAATCAT 59.876 37.037 0.00 0.00 0.00 2.45
222 223 6.435277 CCTCCAAAAGAATCCTTCAGAAATCA 59.565 38.462 0.00 0.00 0.00 2.57
223 224 6.660949 TCCTCCAAAAGAATCCTTCAGAAATC 59.339 38.462 0.00 0.00 0.00 2.17
224 225 6.555711 TCCTCCAAAAGAATCCTTCAGAAAT 58.444 36.000 0.00 0.00 0.00 2.17
225 226 5.952387 TCCTCCAAAAGAATCCTTCAGAAA 58.048 37.500 0.00 0.00 0.00 2.52
226 227 5.582950 TCCTCCAAAAGAATCCTTCAGAA 57.417 39.130 0.00 0.00 0.00 3.02
227 228 5.786121 ATCCTCCAAAAGAATCCTTCAGA 57.214 39.130 0.00 0.00 0.00 3.27
228 229 6.435277 TGAAATCCTCCAAAAGAATCCTTCAG 59.565 38.462 0.00 0.00 0.00 3.02
229 230 6.314120 TGAAATCCTCCAAAAGAATCCTTCA 58.686 36.000 0.00 0.00 0.00 3.02
230 231 6.435591 ACTGAAATCCTCCAAAAGAATCCTTC 59.564 38.462 0.00 0.00 0.00 3.46
231 232 6.318112 ACTGAAATCCTCCAAAAGAATCCTT 58.682 36.000 0.00 0.00 0.00 3.36
232 233 5.896963 ACTGAAATCCTCCAAAAGAATCCT 58.103 37.500 0.00 0.00 0.00 3.24
233 234 6.659242 TGTACTGAAATCCTCCAAAAGAATCC 59.341 38.462 0.00 0.00 0.00 3.01
234 235 7.687941 TGTACTGAAATCCTCCAAAAGAATC 57.312 36.000 0.00 0.00 0.00 2.52
235 236 9.178758 GTATGTACTGAAATCCTCCAAAAGAAT 57.821 33.333 0.00 0.00 0.00 2.40
236 237 8.160765 TGTATGTACTGAAATCCTCCAAAAGAA 58.839 33.333 0.00 0.00 0.00 2.52
237 238 7.685481 TGTATGTACTGAAATCCTCCAAAAGA 58.315 34.615 0.00 0.00 0.00 2.52
238 239 7.921786 TGTATGTACTGAAATCCTCCAAAAG 57.078 36.000 0.00 0.00 0.00 2.27
239 240 7.148086 GCATGTATGTACTGAAATCCTCCAAAA 60.148 37.037 0.00 0.00 0.00 2.44
240 241 6.318648 GCATGTATGTACTGAAATCCTCCAAA 59.681 38.462 0.00 0.00 0.00 3.28
241 242 5.822519 GCATGTATGTACTGAAATCCTCCAA 59.177 40.000 0.00 0.00 0.00 3.53
242 243 5.368145 GCATGTATGTACTGAAATCCTCCA 58.632 41.667 0.00 0.00 0.00 3.86
243 244 4.757149 GGCATGTATGTACTGAAATCCTCC 59.243 45.833 0.00 0.00 0.00 4.30
244 245 4.757149 GGGCATGTATGTACTGAAATCCTC 59.243 45.833 0.00 0.00 0.00 3.71
245 246 4.446311 GGGGCATGTATGTACTGAAATCCT 60.446 45.833 0.00 0.00 0.00 3.24
246 247 3.821033 GGGGCATGTATGTACTGAAATCC 59.179 47.826 0.00 0.00 0.00 3.01
247 248 3.821033 GGGGGCATGTATGTACTGAAATC 59.179 47.826 0.00 0.00 0.00 2.17
248 249 3.832527 GGGGGCATGTATGTACTGAAAT 58.167 45.455 0.00 0.00 0.00 2.17
249 250 3.290948 GGGGGCATGTATGTACTGAAA 57.709 47.619 0.00 0.00 0.00 2.69
272 273 2.157640 TCAAGCAACCAATATGGGGG 57.842 50.000 0.00 0.00 43.37 5.40
273 274 2.629617 GGATCAAGCAACCAATATGGGG 59.370 50.000 0.00 0.00 43.37 4.96
274 275 3.298619 TGGATCAAGCAACCAATATGGG 58.701 45.455 0.00 0.00 43.37 4.00
275 276 6.350696 CCATATGGATCAAGCAACCAATATGG 60.351 42.308 17.49 2.64 39.84 2.74
276 277 6.209986 ACCATATGGATCAAGCAACCAATATG 59.790 38.462 28.77 0.00 37.24 1.78
277 278 6.317312 ACCATATGGATCAAGCAACCAATAT 58.683 36.000 28.77 0.00 37.24 1.28
278 279 5.704354 ACCATATGGATCAAGCAACCAATA 58.296 37.500 28.77 0.00 37.24 1.90
279 280 4.549668 ACCATATGGATCAAGCAACCAAT 58.450 39.130 28.77 0.00 37.24 3.16
280 281 3.979911 ACCATATGGATCAAGCAACCAA 58.020 40.909 28.77 0.00 37.24 3.67
281 282 3.668141 ACCATATGGATCAAGCAACCA 57.332 42.857 28.77 0.00 38.94 3.67
282 283 4.887071 TGTAACCATATGGATCAAGCAACC 59.113 41.667 28.77 4.44 38.94 3.77
283 284 6.449635 TTGTAACCATATGGATCAAGCAAC 57.550 37.500 28.77 10.69 38.94 4.17
284 285 6.832900 TGATTGTAACCATATGGATCAAGCAA 59.167 34.615 28.77 20.24 36.74 3.91
285 286 6.363882 TGATTGTAACCATATGGATCAAGCA 58.636 36.000 28.77 27.70 37.02 3.91
286 287 6.882610 TGATTGTAACCATATGGATCAAGC 57.117 37.500 28.77 25.92 38.94 4.01
287 288 9.687210 CAATTGATTGTAACCATATGGATCAAG 57.313 33.333 28.77 15.48 36.04 3.02
304 305 3.173599 GACATGACGCCACAATTGATTG 58.826 45.455 13.59 0.20 43.26 2.67
305 306 2.164219 GGACATGACGCCACAATTGATT 59.836 45.455 13.59 0.00 0.00 2.57
306 307 1.745087 GGACATGACGCCACAATTGAT 59.255 47.619 13.59 0.00 0.00 2.57
307 308 1.164411 GGACATGACGCCACAATTGA 58.836 50.000 13.59 0.00 0.00 2.57
308 309 1.131126 GAGGACATGACGCCACAATTG 59.869 52.381 3.24 3.24 0.00 2.32
309 310 1.453155 GAGGACATGACGCCACAATT 58.547 50.000 0.00 0.00 0.00 2.32
454 465 2.049433 ACAACCGCCTCGTCGAAG 60.049 61.111 0.00 0.00 0.00 3.79
508 521 1.672854 CCACCCTAGAACGCGGATGA 61.673 60.000 12.47 0.00 0.00 2.92
586 600 0.179034 ATTCCATCGCCAGAAGGAGC 60.179 55.000 0.00 0.00 44.06 4.70
924 950 2.498892 GGTAACGCGGTATAGCACG 58.501 57.895 7.35 10.56 36.85 5.34
937 963 5.745294 TGTCTCGTTAATATCAAGCGGTAAC 59.255 40.000 0.00 0.00 0.00 2.50
938 964 5.893687 TGTCTCGTTAATATCAAGCGGTAA 58.106 37.500 0.00 0.00 0.00 2.85
939 965 5.503662 TGTCTCGTTAATATCAAGCGGTA 57.496 39.130 0.00 0.00 0.00 4.02
940 966 4.380841 TGTCTCGTTAATATCAAGCGGT 57.619 40.909 0.00 0.00 0.00 5.68
941 967 5.907197 AATGTCTCGTTAATATCAAGCGG 57.093 39.130 0.00 0.00 0.00 5.52
942 968 9.124807 TGTATAATGTCTCGTTAATATCAAGCG 57.875 33.333 0.00 0.00 0.00 4.68
1032 1059 2.158449 CGAGACAAGTGCTGATTTGACC 59.842 50.000 0.00 0.00 0.00 4.02
1050 1077 1.600663 CGATTCCGATTCCAGTCCGAG 60.601 57.143 0.00 0.00 38.22 4.63
1072 1099 1.276421 CGGAATACTAGGATGGCTGGG 59.724 57.143 0.00 0.00 0.00 4.45
1073 1100 1.971357 ACGGAATACTAGGATGGCTGG 59.029 52.381 0.00 0.00 0.00 4.85
1074 1101 3.753294 AACGGAATACTAGGATGGCTG 57.247 47.619 0.00 0.00 0.00 4.85
1075 1102 4.163458 TGAAAACGGAATACTAGGATGGCT 59.837 41.667 0.00 0.00 0.00 4.75
1076 1103 4.448210 TGAAAACGGAATACTAGGATGGC 58.552 43.478 0.00 0.00 0.00 4.40
1077 1104 9.367444 GTATATGAAAACGGAATACTAGGATGG 57.633 37.037 0.00 0.00 0.00 3.51
1090 1127 3.936902 CCGTGGTGTATATGAAAACGG 57.063 47.619 0.00 0.00 42.53 4.44
1129 1166 0.391263 GGAAGGCGGGTGTTGACTAG 60.391 60.000 0.00 0.00 0.00 2.57
1223 1265 3.322466 CCGTGCTCCTGGGTCCTT 61.322 66.667 0.00 0.00 0.00 3.36
1249 1291 1.917336 TAGGGGTCGGCCATTGTTCC 61.917 60.000 9.07 0.00 36.17 3.62
1494 1536 2.041265 ATCCTGAAGCCCGTCCCT 59.959 61.111 0.00 0.00 0.00 4.20
1967 2028 4.738998 TGGGCGCAGGAACCATGG 62.739 66.667 11.19 11.19 0.00 3.66
1968 2029 2.440796 ATGGGCGCAGGAACCATG 60.441 61.111 10.83 0.00 43.07 3.66
1969 2030 2.440796 CATGGGCGCAGGAACCAT 60.441 61.111 10.19 9.78 45.48 3.55
1970 2031 3.965258 ACATGGGCGCAGGAACCA 61.965 61.111 22.86 7.37 38.88 3.67
1971 2032 3.443045 CACATGGGCGCAGGAACC 61.443 66.667 22.86 0.01 0.00 3.62
1972 2033 3.443045 CCACATGGGCGCAGGAAC 61.443 66.667 22.86 0.00 0.00 3.62
1973 2034 3.918253 GACCACATGGGCGCAGGAA 62.918 63.158 22.86 0.00 42.05 3.36
1974 2035 4.408821 GACCACATGGGCGCAGGA 62.409 66.667 22.86 0.00 42.05 3.86
1976 2037 4.415150 AGGACCACATGGGCGCAG 62.415 66.667 10.83 4.21 47.00 5.18
1977 2038 4.408821 GAGGACCACATGGGCGCA 62.409 66.667 10.83 5.70 47.00 6.09
1978 2039 4.101448 AGAGGACCACATGGGCGC 62.101 66.667 0.00 0.00 47.00 6.53
1979 2040 2.124983 CAGAGGACCACATGGGCG 60.125 66.667 2.32 0.00 47.00 6.13
1980 2041 2.439156 GCAGAGGACCACATGGGC 60.439 66.667 2.32 0.00 44.61 5.36
2176 2267 4.578898 AGCAACCGTGACGCGACA 62.579 61.111 15.93 11.23 44.77 4.35
2343 2437 3.626924 GGTCGTCTGGGTGGCACT 61.627 66.667 18.45 0.00 0.00 4.40
2654 2868 2.541923 GCGCTATTTCGAGCTCGC 59.458 61.111 30.97 13.90 40.51 5.03
2661 2875 0.385751 TCTCCTCTGGCGCTATTTCG 59.614 55.000 7.64 0.00 0.00 3.46
2677 2891 2.488545 TGCCTTCTACGTCTTCTGTCTC 59.511 50.000 0.00 0.00 0.00 3.36
2678 2892 2.515854 TGCCTTCTACGTCTTCTGTCT 58.484 47.619 0.00 0.00 0.00 3.41
2679 2893 3.246619 CTTGCCTTCTACGTCTTCTGTC 58.753 50.000 0.00 0.00 0.00 3.51
2680 2894 2.028930 CCTTGCCTTCTACGTCTTCTGT 60.029 50.000 0.00 0.00 0.00 3.41
2681 2895 2.611518 CCTTGCCTTCTACGTCTTCTG 58.388 52.381 0.00 0.00 0.00 3.02
2682 2896 1.066787 GCCTTGCCTTCTACGTCTTCT 60.067 52.381 0.00 0.00 0.00 2.85
2683 2897 1.360820 GCCTTGCCTTCTACGTCTTC 58.639 55.000 0.00 0.00 0.00 2.87
2684 2898 0.036294 GGCCTTGCCTTCTACGTCTT 60.036 55.000 0.00 0.00 46.69 3.01
2685 2899 1.597461 GGCCTTGCCTTCTACGTCT 59.403 57.895 0.00 0.00 46.69 4.18
2686 2900 4.203618 GGCCTTGCCTTCTACGTC 57.796 61.111 0.00 0.00 46.69 4.34
2695 2909 2.909965 TTGTTGGACGGCCTTGCC 60.910 61.111 9.82 0.00 46.75 4.52
2696 2910 1.244019 ATCTTGTTGGACGGCCTTGC 61.244 55.000 9.82 0.00 34.31 4.01
2697 2911 0.523072 CATCTTGTTGGACGGCCTTG 59.477 55.000 9.82 0.00 34.31 3.61
2698 2912 0.609131 CCATCTTGTTGGACGGCCTT 60.609 55.000 9.82 0.00 39.25 4.35
2699 2913 1.002134 CCATCTTGTTGGACGGCCT 60.002 57.895 9.82 0.00 39.25 5.19
2700 2914 2.700773 GCCATCTTGTTGGACGGCC 61.701 63.158 0.00 0.00 39.25 6.13
2701 2915 2.877691 GCCATCTTGTTGGACGGC 59.122 61.111 2.19 0.00 39.25 5.68
2702 2916 2.398554 CCGCCATCTTGTTGGACGG 61.399 63.158 14.26 14.26 44.21 4.79
2703 2917 1.671054 ACCGCCATCTTGTTGGACG 60.671 57.895 2.19 5.20 39.25 4.79
2704 2918 0.605319 TCACCGCCATCTTGTTGGAC 60.605 55.000 2.19 0.00 39.25 4.02
2705 2919 0.321564 CTCACCGCCATCTTGTTGGA 60.322 55.000 2.19 0.00 39.25 3.53
2706 2920 1.308069 CCTCACCGCCATCTTGTTGG 61.308 60.000 0.00 0.00 39.94 3.77
2707 2921 0.321564 TCCTCACCGCCATCTTGTTG 60.322 55.000 0.00 0.00 0.00 3.33
2708 2922 0.036010 CTCCTCACCGCCATCTTGTT 60.036 55.000 0.00 0.00 0.00 2.83
2709 2923 1.599047 CTCCTCACCGCCATCTTGT 59.401 57.895 0.00 0.00 0.00 3.16
2710 2924 1.153289 CCTCCTCACCGCCATCTTG 60.153 63.158 0.00 0.00 0.00 3.02
2711 2925 1.306141 TCCTCCTCACCGCCATCTT 60.306 57.895 0.00 0.00 0.00 2.40
2712 2926 2.060980 GTCCTCCTCACCGCCATCT 61.061 63.158 0.00 0.00 0.00 2.90
2713 2927 2.501610 GTCCTCCTCACCGCCATC 59.498 66.667 0.00 0.00 0.00 3.51
2714 2928 3.461773 CGTCCTCCTCACCGCCAT 61.462 66.667 0.00 0.00 0.00 4.40
2715 2929 4.671590 TCGTCCTCCTCACCGCCA 62.672 66.667 0.00 0.00 0.00 5.69
2716 2930 3.827898 CTCGTCCTCCTCACCGCC 61.828 72.222 0.00 0.00 0.00 6.13
2717 2931 4.500116 GCTCGTCCTCCTCACCGC 62.500 72.222 0.00 0.00 0.00 5.68
2718 2932 3.057547 CTGCTCGTCCTCCTCACCG 62.058 68.421 0.00 0.00 0.00 4.94
2719 2933 2.716017 CCTGCTCGTCCTCCTCACC 61.716 68.421 0.00 0.00 0.00 4.02
2720 2934 1.662438 CTCCTGCTCGTCCTCCTCAC 61.662 65.000 0.00 0.00 0.00 3.51
2721 2935 1.379176 CTCCTGCTCGTCCTCCTCA 60.379 63.158 0.00 0.00 0.00 3.86
2722 2936 2.124693 CCTCCTGCTCGTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
2723 2937 2.043450 CCTCCTGCTCGTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
2724 2938 2.043852 TCCTCCTGCTCGTCCTCC 60.044 66.667 0.00 0.00 0.00 4.30
2725 2939 2.124693 CCTCCTCCTGCTCGTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
2726 2940 2.043450 CCTCCTCCTGCTCGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
2727 2941 3.151022 CCCTCCTCCTGCTCGTCC 61.151 72.222 0.00 0.00 0.00 4.79
2728 2942 3.844090 GCCCTCCTCCTGCTCGTC 61.844 72.222 0.00 0.00 0.00 4.20
2731 2945 3.844090 GTCGCCCTCCTCCTGCTC 61.844 72.222 0.00 0.00 0.00 4.26
2734 2948 3.827898 GTCGTCGCCCTCCTCCTG 61.828 72.222 0.00 0.00 0.00 3.86
2737 2951 4.176851 GTCGTCGTCGCCCTCCTC 62.177 72.222 0.00 0.00 36.96 3.71
2738 2952 4.719106 AGTCGTCGTCGCCCTCCT 62.719 66.667 0.00 0.00 36.96 3.69
2739 2953 3.680338 GAAGTCGTCGTCGCCCTCC 62.680 68.421 0.00 0.00 36.96 4.30
2740 2954 2.202453 GAAGTCGTCGTCGCCCTC 60.202 66.667 0.00 0.00 36.96 4.30
2741 2955 4.099170 CGAAGTCGTCGTCGCCCT 62.099 66.667 5.08 0.00 45.09 5.19
2749 2963 0.857287 AAAAACCTCGCGAAGTCGTC 59.143 50.000 11.39 0.00 42.22 4.20
2750 2964 0.580104 CAAAAACCTCGCGAAGTCGT 59.420 50.000 11.39 1.26 42.22 4.34
2751 2965 0.110823 CCAAAAACCTCGCGAAGTCG 60.111 55.000 11.39 0.00 43.27 4.18
2752 2966 1.223187 TCCAAAAACCTCGCGAAGTC 58.777 50.000 11.39 0.00 0.00 3.01
2753 2967 1.535462 CATCCAAAAACCTCGCGAAGT 59.465 47.619 11.33 7.60 0.00 3.01
2754 2968 1.804151 TCATCCAAAAACCTCGCGAAG 59.196 47.619 11.33 6.75 0.00 3.79
2755 2969 1.804151 CTCATCCAAAAACCTCGCGAA 59.196 47.619 11.33 0.00 0.00 4.70
2756 2970 1.438651 CTCATCCAAAAACCTCGCGA 58.561 50.000 9.26 9.26 0.00 5.87
2757 2971 0.447801 CCTCATCCAAAAACCTCGCG 59.552 55.000 0.00 0.00 0.00 5.87
2758 2972 1.740025 CTCCTCATCCAAAAACCTCGC 59.260 52.381 0.00 0.00 0.00 5.03
2759 2973 1.740025 GCTCCTCATCCAAAAACCTCG 59.260 52.381 0.00 0.00 0.00 4.63
2760 2974 3.078891 AGCTCCTCATCCAAAAACCTC 57.921 47.619 0.00 0.00 0.00 3.85
2761 2975 3.160269 CAAGCTCCTCATCCAAAAACCT 58.840 45.455 0.00 0.00 0.00 3.50
2762 2976 3.157087 TCAAGCTCCTCATCCAAAAACC 58.843 45.455 0.00 0.00 0.00 3.27
2763 2977 4.853924 TTCAAGCTCCTCATCCAAAAAC 57.146 40.909 0.00 0.00 0.00 2.43
2764 2978 6.350445 GCTATTTCAAGCTCCTCATCCAAAAA 60.350 38.462 0.00 0.00 39.50 1.94
2765 2979 5.126061 GCTATTTCAAGCTCCTCATCCAAAA 59.874 40.000 0.00 0.00 39.50 2.44
2766 2980 4.641989 GCTATTTCAAGCTCCTCATCCAAA 59.358 41.667 0.00 0.00 39.50 3.28
2767 2981 4.202441 GCTATTTCAAGCTCCTCATCCAA 58.798 43.478 0.00 0.00 39.50 3.53
2768 2982 3.742327 CGCTATTTCAAGCTCCTCATCCA 60.742 47.826 0.00 0.00 40.49 3.41
2769 2983 2.805099 CGCTATTTCAAGCTCCTCATCC 59.195 50.000 0.00 0.00 40.49 3.51
2770 2984 2.222911 GCGCTATTTCAAGCTCCTCATC 59.777 50.000 0.00 0.00 40.49 2.92
2771 2985 2.216898 GCGCTATTTCAAGCTCCTCAT 58.783 47.619 0.00 0.00 40.49 2.90
2772 2986 1.656652 GCGCTATTTCAAGCTCCTCA 58.343 50.000 0.00 0.00 40.49 3.86
2773 2987 0.940833 GGCGCTATTTCAAGCTCCTC 59.059 55.000 7.64 0.00 42.84 3.71
2774 2988 0.253044 TGGCGCTATTTCAAGCTCCT 59.747 50.000 7.64 0.00 45.70 3.69
2775 2989 0.659957 CTGGCGCTATTTCAAGCTCC 59.340 55.000 7.64 0.00 45.70 4.70
2776 2990 1.596727 CTCTGGCGCTATTTCAAGCTC 59.403 52.381 7.64 0.00 40.49 4.09
2777 2991 1.661341 CTCTGGCGCTATTTCAAGCT 58.339 50.000 7.64 0.00 40.49 3.74
2778 2992 0.659957 CCTCTGGCGCTATTTCAAGC 59.340 55.000 7.64 0.00 39.21 4.01
2779 2993 2.159043 TCTCCTCTGGCGCTATTTCAAG 60.159 50.000 7.64 0.00 0.00 3.02
2780 2994 1.831106 TCTCCTCTGGCGCTATTTCAA 59.169 47.619 7.64 0.00 0.00 2.69
2781 2995 1.137086 GTCTCCTCTGGCGCTATTTCA 59.863 52.381 7.64 0.00 0.00 2.69
2782 2996 1.859383 GTCTCCTCTGGCGCTATTTC 58.141 55.000 7.64 0.00 0.00 2.17
2783 2997 0.103208 CGTCTCCTCTGGCGCTATTT 59.897 55.000 7.64 0.00 0.00 1.40
2784 2998 1.736586 CGTCTCCTCTGGCGCTATT 59.263 57.895 7.64 0.00 0.00 1.73
2785 2999 2.196925 CCGTCTCCTCTGGCGCTAT 61.197 63.158 7.64 0.00 0.00 2.97
2786 3000 2.829003 CCGTCTCCTCTGGCGCTA 60.829 66.667 7.64 0.00 0.00 4.26
2787 3001 4.742649 TCCGTCTCCTCTGGCGCT 62.743 66.667 7.64 0.00 0.00 5.92
2788 3002 3.708220 CTTCCGTCTCCTCTGGCGC 62.708 68.421 0.00 0.00 0.00 6.53
2789 3003 2.046864 TCTTCCGTCTCCTCTGGCG 61.047 63.158 0.00 0.00 0.00 5.69
2790 3004 1.513622 GTCTTCCGTCTCCTCTGGC 59.486 63.158 0.00 0.00 0.00 4.85
2791 3005 1.803943 CGTCTTCCGTCTCCTCTGG 59.196 63.158 0.00 0.00 0.00 3.86
2841 3175 1.611491 GCTCATAACCTCTCCTCCTCG 59.389 57.143 0.00 0.00 0.00 4.63
2842 3176 2.364002 GTGCTCATAACCTCTCCTCCTC 59.636 54.545 0.00 0.00 0.00 3.71
2843 3177 2.393646 GTGCTCATAACCTCTCCTCCT 58.606 52.381 0.00 0.00 0.00 3.69
2844 3178 1.414550 GGTGCTCATAACCTCTCCTCC 59.585 57.143 0.00 0.00 34.66 4.30
2846 3180 2.559381 AGGTGCTCATAACCTCTCCT 57.441 50.000 0.00 0.00 45.13 3.69
2881 3218 0.743701 ATCGCAGGCAGCTCTTCTTG 60.744 55.000 0.00 0.00 42.61 3.02
2882 3219 0.743701 CATCGCAGGCAGCTCTTCTT 60.744 55.000 0.00 0.00 42.61 2.52
2919 3267 1.678627 CTACTAGTGACCTCGCATGCT 59.321 52.381 17.13 0.00 0.00 3.79
2980 3337 9.498176 GTGAAGAGTATACCAACTAAAGGAAAA 57.502 33.333 0.00 0.00 0.00 2.29
3104 3481 9.565213 GAAGAACAAGGATGAACAGAAAATATG 57.435 33.333 0.00 0.00 0.00 1.78
3112 3489 3.755378 CAGGGAAGAACAAGGATGAACAG 59.245 47.826 0.00 0.00 0.00 3.16
3127 3504 5.897377 ATAAATCCGACAAAACAGGGAAG 57.103 39.130 0.00 0.00 31.24 3.46
3128 3505 6.658188 AAATAAATCCGACAAAACAGGGAA 57.342 33.333 0.00 0.00 31.24 3.97
3157 3597 0.038892 GCCCGACGAAGAACAGTACA 60.039 55.000 0.00 0.00 0.00 2.90
3275 3716 7.233389 AGCTAGTATGGTTATATCACTGTGG 57.767 40.000 8.11 0.00 0.00 4.17
3277 3718 8.391699 TCCTAGCTAGTATGGTTATATCACTGT 58.608 37.037 19.31 0.00 0.00 3.55
3287 3728 4.348168 CCCACAATCCTAGCTAGTATGGTT 59.652 45.833 19.31 4.22 0.00 3.67
3288 3729 3.904339 CCCACAATCCTAGCTAGTATGGT 59.096 47.826 19.31 10.17 0.00 3.55
3342 3807 5.950758 TTTACAGCCGTGATAAAACACAT 57.049 34.783 0.00 0.00 40.34 3.21
3413 3904 7.763528 TCGTAACACAAACTCTTAAACTAACCA 59.236 33.333 0.00 0.00 0.00 3.67
3414 3905 8.130307 TCGTAACACAAACTCTTAAACTAACC 57.870 34.615 0.00 0.00 0.00 2.85
3419 3910 9.919348 TGTTAATCGTAACACAAACTCTTAAAC 57.081 29.630 0.00 0.00 43.71 2.01
3485 3976 0.596083 CGTTTGCATCCGCCAACAAA 60.596 50.000 0.00 0.00 42.45 2.83
3514 4005 7.349598 AGAAAGTGCATGGAATTAGACCTAAT 58.650 34.615 0.00 0.00 37.36 1.73
3515 4006 6.721318 AGAAAGTGCATGGAATTAGACCTAA 58.279 36.000 0.00 0.00 0.00 2.69
3516 4007 6.313519 AGAAAGTGCATGGAATTAGACCTA 57.686 37.500 0.00 0.00 0.00 3.08
3517 4008 5.184892 AGAAAGTGCATGGAATTAGACCT 57.815 39.130 0.00 0.00 0.00 3.85
3581 4104 6.868339 TCATATTTCATGGCTATACACTGTCG 59.132 38.462 0.00 0.00 0.00 4.35
3682 4220 4.133856 AGAAAATTTGCGTCGAAGTCTG 57.866 40.909 0.00 0.00 0.00 3.51
3722 4260 1.267574 TGGCTCCTGAAGGTAGCTGG 61.268 60.000 15.71 0.00 37.98 4.85
3757 4295 9.444600 AGAACAGTTCTTGAGTTTTTACTGTAA 57.555 29.630 10.27 0.00 43.72 2.41
3804 4347 1.005450 GGCCCCAAGAAAGTATGGACA 59.995 52.381 0.00 0.00 39.12 4.02
3805 4348 1.285078 AGGCCCCAAGAAAGTATGGAC 59.715 52.381 0.00 0.00 39.12 4.02
3806 4349 1.564348 GAGGCCCCAAGAAAGTATGGA 59.436 52.381 0.00 0.00 39.12 3.41
3807 4350 1.284785 TGAGGCCCCAAGAAAGTATGG 59.715 52.381 0.00 0.00 36.42 2.74
3808 4351 2.806945 TGAGGCCCCAAGAAAGTATG 57.193 50.000 0.00 0.00 0.00 2.39
3809 4352 3.269381 TGAATGAGGCCCCAAGAAAGTAT 59.731 43.478 0.00 0.00 0.00 2.12
3857 4400 2.191128 AGACCCTGACTGAATGTTGC 57.809 50.000 0.00 0.00 0.00 4.17
3885 4428 4.021102 TCTCCTGTGTTTCCAGAAATCC 57.979 45.455 0.00 0.00 34.23 3.01
3975 4518 6.546403 TGATCTATATCCATCCTAGTTACGGC 59.454 42.308 0.00 0.00 0.00 5.68
3976 4519 7.556635 TGTGATCTATATCCATCCTAGTTACGG 59.443 40.741 0.00 0.00 0.00 4.02
3991 4534 8.609483 AGAGTTGGGCATATTTGTGATCTATAT 58.391 33.333 0.00 0.00 0.00 0.86
3992 4535 7.977818 AGAGTTGGGCATATTTGTGATCTATA 58.022 34.615 0.00 0.00 0.00 1.31
4018 4561 1.898472 TGCTGGGAGTGAAAGAGAGAG 59.102 52.381 0.00 0.00 0.00 3.20
4019 4562 1.898472 CTGCTGGGAGTGAAAGAGAGA 59.102 52.381 0.00 0.00 0.00 3.10
4020 4563 1.622811 ACTGCTGGGAGTGAAAGAGAG 59.377 52.381 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.