Multiple sequence alignment - TraesCS4D01G126700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G126700 chr4D 100.000 2550 0 0 1 2550 111138989 111141538 0.000000e+00 4710.0
1 TraesCS4D01G126700 chr4B 88.080 1401 73 24 865 2208 172320662 172322025 0.000000e+00 1576.0
2 TraesCS4D01G126700 chr4B 85.476 420 33 22 449 861 172320226 172320624 1.830000e-111 412.0
3 TraesCS4D01G126700 chr4B 95.489 133 6 0 1 133 172319648 172319780 1.990000e-51 213.0
4 TraesCS4D01G126700 chr4A 90.239 502 30 7 1419 1916 465790498 465790012 2.770000e-179 638.0
5 TraesCS4D01G126700 chr4A 86.243 378 17 13 912 1267 465790886 465790522 6.660000e-101 377.0
6 TraesCS4D01G126700 chr4A 90.079 252 16 4 1923 2167 465789825 465789576 4.090000e-83 318.0
7 TraesCS4D01G126700 chr4A 96.591 176 5 1 1 176 465794462 465794288 8.920000e-75 291.0
8 TraesCS4D01G126700 chr4A 90.625 160 10 4 706 863 465793394 465793238 9.250000e-50 207.0
9 TraesCS4D01G126700 chr4A 87.288 118 11 3 182 297 465794253 465794138 5.720000e-27 132.0
10 TraesCS4D01G126700 chr1D 95.266 338 16 0 2213 2550 99608418 99608081 1.040000e-148 536.0
11 TraesCS4D01G126700 chr1D 94.412 340 17 2 2211 2550 451114122 451113785 2.910000e-144 521.0
12 TraesCS4D01G126700 chr1D 93.824 340 19 2 2212 2550 7883590 7883928 6.290000e-141 510.0
13 TraesCS4D01G126700 chr2A 94.065 337 20 0 2213 2549 27648954 27648618 1.750000e-141 512.0
14 TraesCS4D01G126700 chr5A 93.787 338 21 0 2213 2550 13531373 13531036 2.260000e-140 508.0
15 TraesCS4D01G126700 chr7D 92.690 342 23 2 2210 2550 37104668 37104328 2.280000e-135 492.0
16 TraesCS4D01G126700 chr2B 92.941 340 21 3 2212 2550 732866619 732866956 2.280000e-135 492.0
17 TraesCS4D01G126700 chr2B 88.000 75 6 3 1476 1550 379880968 379880897 4.520000e-13 86.1
18 TraesCS4D01G126700 chr2D 92.690 342 22 3 2210 2550 470564806 470565145 8.200000e-135 490.0
19 TraesCS4D01G126700 chr2D 86.250 80 7 4 1476 1555 312026893 312026968 1.630000e-12 84.2
20 TraesCS4D01G126700 chr5B 92.647 340 23 2 2211 2550 278098342 278098679 2.950000e-134 488.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G126700 chr4D 111138989 111141538 2549 False 4710.000000 4710 100.000000 1 2550 1 chr4D.!!$F1 2549
1 TraesCS4D01G126700 chr4B 172319648 172322025 2377 False 733.666667 1576 89.681667 1 2208 3 chr4B.!!$F1 2207
2 TraesCS4D01G126700 chr4A 465789576 465794462 4886 True 327.166667 638 90.177500 1 2167 6 chr4A.!!$R1 2166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 549 0.107703 TGCTTCGGTTATGGAGGCTG 60.108 55.0 0.0 0.0 37.4 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 4929 0.097674 GCAAGCGTTCAAGCATCGAT 59.902 50.0 0.0 0.0 40.15 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.824341 GTCTCGGAAGGACAGGAACTTA 59.176 50.000 0.00 0.00 34.60 2.24
48 49 1.094785 TATGCTTGAAAGAAGCCGCC 58.905 50.000 4.05 0.00 42.36 6.13
75 76 1.531748 CCAGTACATGGGGCGGATT 59.468 57.895 0.00 0.00 46.36 3.01
126 127 3.450457 ACCAATCTCTCTACAGGCTTCAG 59.550 47.826 0.00 0.00 0.00 3.02
149 150 2.084546 GATTTGAACCTGAAGACGGGG 58.915 52.381 0.00 0.00 46.20 5.73
151 152 0.685097 TTGAACCTGAAGACGGGGAG 59.315 55.000 0.00 0.00 46.20 4.30
176 177 4.684877 GCTAGAGGCTTAGTGTAGTTTCC 58.315 47.826 0.00 0.00 38.06 3.13
177 178 4.441773 GCTAGAGGCTTAGTGTAGTTTCCC 60.442 50.000 0.00 0.00 38.06 3.97
178 179 3.517612 AGAGGCTTAGTGTAGTTTCCCA 58.482 45.455 0.00 0.00 0.00 4.37
179 180 3.908103 AGAGGCTTAGTGTAGTTTCCCAA 59.092 43.478 0.00 0.00 0.00 4.12
217 247 2.392662 TCCTGTTAGAGATGGAGCTGG 58.607 52.381 0.00 0.00 0.00 4.85
223 253 1.040339 AGAGATGGAGCTGGTCGACC 61.040 60.000 28.17 28.17 0.00 4.79
225 255 1.040339 AGATGGAGCTGGTCGACCTC 61.040 60.000 33.39 22.71 36.82 3.85
230 260 2.183046 GCTGGTCGACCTCTGCTC 59.817 66.667 33.39 13.09 36.82 4.26
237 267 4.500116 GACCTCTGCTCCGCGACC 62.500 72.222 8.23 0.00 0.00 4.79
246 276 4.753662 TCCGCGACCCCTGCTAGT 62.754 66.667 8.23 0.00 0.00 2.57
258 288 4.223953 CCCCTGCTAGTCTATTCTTGGTA 58.776 47.826 0.00 0.00 0.00 3.25
259 289 4.841246 CCCCTGCTAGTCTATTCTTGGTAT 59.159 45.833 0.00 0.00 0.00 2.73
261 291 5.336055 CCCTGCTAGTCTATTCTTGGTATCG 60.336 48.000 0.00 0.00 0.00 2.92
263 293 4.583073 TGCTAGTCTATTCTTGGTATCGCA 59.417 41.667 0.00 0.00 0.00 5.10
266 296 3.060602 GTCTATTCTTGGTATCGCAGGC 58.939 50.000 0.00 0.00 0.00 4.85
268 298 0.178068 ATTCTTGGTATCGCAGGCGT 59.822 50.000 13.83 3.96 40.74 5.68
269 299 0.739462 TTCTTGGTATCGCAGGCGTG 60.739 55.000 13.83 1.01 40.74 5.34
318 424 5.290643 GCACTCAGTGAGTTCTGATAATGAC 59.709 44.000 23.33 2.48 41.37 3.06
321 427 3.553511 CAGTGAGTTCTGATAATGACGGC 59.446 47.826 0.00 0.00 37.61 5.68
333 439 0.802494 ATGACGGCGGTGATTTTGAC 59.198 50.000 13.24 0.00 0.00 3.18
334 440 0.533085 TGACGGCGGTGATTTTGACA 60.533 50.000 13.24 0.00 0.00 3.58
340 446 3.561503 GGCGGTGATTTTGACAGTAAAC 58.438 45.455 0.00 0.00 0.00 2.01
341 447 3.003897 GGCGGTGATTTTGACAGTAAACA 59.996 43.478 0.00 0.00 0.00 2.83
351 457 5.666969 TTGACAGTAAACACTGGAAATCG 57.333 39.130 9.42 0.00 41.76 3.34
390 499 5.425539 CCTAATCTAGGTCAAAGGAGTGGAA 59.574 44.000 0.00 0.00 41.18 3.53
414 523 1.837051 CTCTATGGCGCCCCTGGTA 60.837 63.158 26.77 3.54 0.00 3.25
420 529 3.085296 GCGCCCCTGGTACCCTTA 61.085 66.667 10.07 0.00 0.00 2.69
422 531 1.450211 CGCCCCTGGTACCCTTATG 59.550 63.158 10.07 0.00 0.00 1.90
425 534 1.222567 CCCCTGGTACCCTTATGCTT 58.777 55.000 10.07 0.00 0.00 3.91
437 546 3.403038 CCTTATGCTTCGGTTATGGAGG 58.597 50.000 0.00 0.00 0.00 4.30
440 549 0.107703 TGCTTCGGTTATGGAGGCTG 60.108 55.000 0.00 0.00 37.40 4.85
441 550 0.815615 GCTTCGGTTATGGAGGCTGG 60.816 60.000 0.00 0.00 34.09 4.85
445 554 0.469917 CGGTTATGGAGGCTGGATGT 59.530 55.000 0.00 0.00 0.00 3.06
469 810 3.706594 AGTGTGAGGACGTTCATGGATAT 59.293 43.478 0.00 0.00 0.00 1.63
475 816 4.219115 AGGACGTTCATGGATATGAGTCT 58.781 43.478 0.00 0.00 43.76 3.24
477 818 4.302455 GACGTTCATGGATATGAGTCTGG 58.698 47.826 0.00 0.00 43.76 3.86
478 819 3.960755 ACGTTCATGGATATGAGTCTGGA 59.039 43.478 0.00 0.00 43.76 3.86
479 820 4.038522 ACGTTCATGGATATGAGTCTGGAG 59.961 45.833 0.00 0.00 43.76 3.86
480 821 4.560311 CGTTCATGGATATGAGTCTGGAGG 60.560 50.000 0.00 0.00 43.76 4.30
481 822 4.204792 TCATGGATATGAGTCTGGAGGT 57.795 45.455 0.00 0.00 38.37 3.85
482 823 5.339423 TCATGGATATGAGTCTGGAGGTA 57.661 43.478 0.00 0.00 38.37 3.08
483 824 5.715921 TCATGGATATGAGTCTGGAGGTAA 58.284 41.667 0.00 0.00 38.37 2.85
484 825 6.326161 TCATGGATATGAGTCTGGAGGTAAT 58.674 40.000 0.00 0.00 38.37 1.89
485 826 6.212187 TCATGGATATGAGTCTGGAGGTAATG 59.788 42.308 0.00 0.00 38.37 1.90
486 827 5.467738 TGGATATGAGTCTGGAGGTAATGT 58.532 41.667 0.00 0.00 0.00 2.71
487 828 5.905331 TGGATATGAGTCTGGAGGTAATGTT 59.095 40.000 0.00 0.00 0.00 2.71
492 833 2.904434 AGTCTGGAGGTAATGTTCGGTT 59.096 45.455 0.00 0.00 0.00 4.44
510 851 9.316730 TGTTCGGTTATGTTGGTTTATACTATC 57.683 33.333 0.00 0.00 0.00 2.08
553 912 5.276461 TGTAGTGCTCTCTTGACAGAAAA 57.724 39.130 0.00 0.00 0.00 2.29
554 913 5.292765 TGTAGTGCTCTCTTGACAGAAAAG 58.707 41.667 0.00 0.00 0.00 2.27
555 914 4.414337 AGTGCTCTCTTGACAGAAAAGT 57.586 40.909 0.00 0.00 0.00 2.66
556 915 4.376146 AGTGCTCTCTTGACAGAAAAGTC 58.624 43.478 0.00 0.00 38.99 3.01
557 916 4.100808 AGTGCTCTCTTGACAGAAAAGTCT 59.899 41.667 0.00 0.00 39.27 3.24
559 918 3.993736 GCTCTCTTGACAGAAAAGTCTCC 59.006 47.826 0.00 0.00 39.27 3.71
560 919 4.262420 GCTCTCTTGACAGAAAAGTCTCCT 60.262 45.833 0.00 0.00 39.27 3.69
561 920 5.461032 TCTCTTGACAGAAAAGTCTCCTC 57.539 43.478 0.00 0.00 39.27 3.71
562 921 4.022762 TCTCTTGACAGAAAAGTCTCCTCG 60.023 45.833 0.00 0.00 39.27 4.63
573 932 2.754658 CTCCTCGGTAGGCGGTGT 60.755 66.667 0.00 0.00 43.31 4.16
601 960 3.750371 TCCTTGGGTTGATGTGTTGTAG 58.250 45.455 0.00 0.00 0.00 2.74
602 961 3.392947 TCCTTGGGTTGATGTGTTGTAGA 59.607 43.478 0.00 0.00 0.00 2.59
604 963 5.249622 TCCTTGGGTTGATGTGTTGTAGATA 59.750 40.000 0.00 0.00 0.00 1.98
605 964 5.943416 CCTTGGGTTGATGTGTTGTAGATAA 59.057 40.000 0.00 0.00 0.00 1.75
612 971 7.692291 GGTTGATGTGTTGTAGATAATTTGACG 59.308 37.037 0.00 0.00 0.00 4.35
613 972 7.899178 TGATGTGTTGTAGATAATTTGACGT 57.101 32.000 0.00 0.00 0.00 4.34
635 999 9.125906 GACGTATCATTGATACTACATGGTTAC 57.874 37.037 26.34 6.51 41.71 2.50
648 1012 3.830755 ACATGGTTACTGTAGTTCGGAGT 59.169 43.478 0.00 0.00 0.00 3.85
684 1053 3.442977 ACTCGGAGTACCAATACACTGTC 59.557 47.826 9.33 0.00 33.30 3.51
689 1058 0.173935 TACCAATACACTGTCGCGGG 59.826 55.000 6.13 0.00 0.00 6.13
772 1200 6.173427 ACTAACGTTGGGGAGTAAAAAGTA 57.827 37.500 16.48 0.00 0.00 2.24
773 1201 5.991606 ACTAACGTTGGGGAGTAAAAAGTAC 59.008 40.000 16.48 0.00 0.00 2.73
796 1224 2.233271 ACATTGTTGAAGGGAGCACAG 58.767 47.619 0.00 0.00 0.00 3.66
863 1291 4.696455 ACAACTTGCCCTCAGAATTTTTG 58.304 39.130 0.00 0.00 0.00 2.44
877 1342 8.659569 TCAGAATTTTTGAATTTCGAAGATCG 57.340 30.769 0.00 0.00 42.10 3.69
879 1344 7.272084 CAGAATTTTTGAATTTCGAAGATCGCT 59.728 33.333 0.00 2.74 40.21 4.93
886 1351 6.042777 TGAATTTCGAAGATCGCTACAAGAT 58.957 36.000 0.00 0.00 40.21 2.40
979 3718 3.599343 CACAGCAATGTCAACCTAGCTA 58.401 45.455 0.00 0.00 0.00 3.32
980 3719 3.372206 CACAGCAATGTCAACCTAGCTAC 59.628 47.826 0.00 0.00 0.00 3.58
981 3720 3.261897 ACAGCAATGTCAACCTAGCTACT 59.738 43.478 0.00 0.00 0.00 2.57
982 3721 4.466370 ACAGCAATGTCAACCTAGCTACTA 59.534 41.667 0.00 0.00 0.00 1.82
983 3722 4.806247 CAGCAATGTCAACCTAGCTACTAC 59.194 45.833 0.00 0.00 0.00 2.73
984 3723 3.797256 GCAATGTCAACCTAGCTACTACG 59.203 47.826 0.00 0.00 0.00 3.51
1020 3759 2.435372 TATTTAAGGCCACCCTGCTG 57.565 50.000 5.01 0.00 41.90 4.41
1021 3760 0.972471 ATTTAAGGCCACCCTGCTGC 60.972 55.000 5.01 0.00 41.90 5.25
1022 3761 2.080336 TTTAAGGCCACCCTGCTGCT 62.080 55.000 5.01 0.00 41.90 4.24
1035 3774 0.905357 TGCTGCTACTTCTTCCCCTC 59.095 55.000 0.00 0.00 0.00 4.30
1038 3777 0.417841 TGCTACTTCTTCCCCTCCCT 59.582 55.000 0.00 0.00 0.00 4.20
1039 3778 1.124780 GCTACTTCTTCCCCTCCCTC 58.875 60.000 0.00 0.00 0.00 4.30
1050 3797 2.284699 CTCCCTCCCTCCCAACGT 60.285 66.667 0.00 0.00 0.00 3.99
1112 3860 5.428457 ACATAACCTCTCTCTCTCTCTCTCA 59.572 44.000 0.00 0.00 0.00 3.27
1113 3861 4.927267 AACCTCTCTCTCTCTCTCTCAA 57.073 45.455 0.00 0.00 0.00 3.02
1114 3862 4.927267 ACCTCTCTCTCTCTCTCTCAAA 57.073 45.455 0.00 0.00 0.00 2.69
1203 3976 0.188342 ATCTCTCCTCCTGCTCCTCC 59.812 60.000 0.00 0.00 0.00 4.30
1215 3988 1.610327 CTCCTCCTCGTCTCCTCCA 59.390 63.158 0.00 0.00 0.00 3.86
1280 4062 4.217983 CACGGAGAGGTACTTATACATCCC 59.782 50.000 0.00 0.00 41.99 3.85
1294 4076 3.627395 ACATCCCGAATGTGTGTGTAT 57.373 42.857 3.02 0.00 47.00 2.29
1295 4077 4.746535 ACATCCCGAATGTGTGTGTATA 57.253 40.909 3.02 0.00 47.00 1.47
1296 4078 5.290493 ACATCCCGAATGTGTGTGTATAT 57.710 39.130 3.02 0.00 47.00 0.86
1297 4079 6.413783 ACATCCCGAATGTGTGTGTATATA 57.586 37.500 3.02 0.00 47.00 0.86
1298 4080 6.455647 ACATCCCGAATGTGTGTGTATATAG 58.544 40.000 3.02 0.00 47.00 1.31
1299 4081 6.266786 ACATCCCGAATGTGTGTGTATATAGA 59.733 38.462 3.02 0.00 47.00 1.98
1300 4082 6.718522 TCCCGAATGTGTGTGTATATAGAA 57.281 37.500 0.00 0.00 0.00 2.10
1301 4083 6.509656 TCCCGAATGTGTGTGTATATAGAAC 58.490 40.000 0.00 0.00 0.00 3.01
1302 4084 6.097129 TCCCGAATGTGTGTGTATATAGAACA 59.903 38.462 0.00 0.00 0.00 3.18
1303 4085 6.759356 CCCGAATGTGTGTGTATATAGAACAA 59.241 38.462 0.78 0.00 0.00 2.83
1321 4103 5.704515 AGAACAAGACATGAGAGATGTTTGG 59.295 40.000 0.00 0.00 31.68 3.28
1417 4199 2.125912 GCGGCGAGCTTCTTCAGA 60.126 61.111 12.98 0.00 44.04 3.27
1570 4360 2.489437 GCTAGCTAGCTGGTACCCTAGT 60.489 54.545 33.71 12.66 45.62 2.57
1597 4387 7.609146 TGGGACTGAAATCATAGCATCATATTC 59.391 37.037 0.00 0.00 0.00 1.75
1660 4451 1.880186 TTTTTCTGCGAATCGGGGC 59.120 52.632 4.35 0.00 0.00 5.80
1664 4455 2.436646 CTGCGAATCGGGGCACTT 60.437 61.111 4.35 0.00 34.97 3.16
1754 4546 1.461127 GCTGGCTTGAGTAAGAACACG 59.539 52.381 0.00 0.00 35.92 4.49
1794 4586 6.828785 AGGTCACCCTTGAACAATAATGATAC 59.171 38.462 0.00 0.00 42.59 2.24
1796 4588 7.990886 GGTCACCCTTGAACAATAATGATACTA 59.009 37.037 0.00 0.00 39.53 1.82
1828 4622 4.095782 GTGTACGGGTGATGCATTATTTGT 59.904 41.667 0.00 0.20 0.00 2.83
1837 4631 7.173047 GGGTGATGCATTATTTGTTCAACTTTT 59.827 33.333 0.00 0.00 31.69 2.27
1867 4661 1.215423 TCTCCATGTCCCTCTCGATCA 59.785 52.381 0.00 0.00 0.00 2.92
1916 4714 3.733224 CGCTCGTACTACATCTACGTACT 59.267 47.826 0.00 0.00 38.49 2.73
1917 4715 4.912187 CGCTCGTACTACATCTACGTACTA 59.088 45.833 0.00 0.00 38.49 1.82
1918 4716 5.059099 CGCTCGTACTACATCTACGTACTAG 59.941 48.000 0.00 0.00 38.49 2.57
1971 4956 0.455410 TGCTTGAACGCTTGCAGTTT 59.545 45.000 0.00 0.00 31.14 2.66
2131 5121 2.283101 GATGGGCAGCACCAACCA 60.283 61.111 6.69 0.00 45.13 3.67
2188 5181 2.162921 CTGCTTGACTTGGACGCACG 62.163 60.000 0.00 0.00 0.00 5.34
2208 5201 2.754648 CTGTACAGGACGGCACATG 58.245 57.895 15.49 0.00 0.00 3.21
2209 5202 0.037326 CTGTACAGGACGGCACATGT 60.037 55.000 15.49 0.00 0.00 3.21
2210 5203 0.394938 TGTACAGGACGGCACATGTT 59.605 50.000 0.00 0.00 0.00 2.71
2211 5204 1.202710 TGTACAGGACGGCACATGTTT 60.203 47.619 0.00 0.00 0.00 2.83
2212 5205 1.877443 GTACAGGACGGCACATGTTTT 59.123 47.619 0.00 0.00 0.00 2.43
2213 5206 1.398692 ACAGGACGGCACATGTTTTT 58.601 45.000 0.00 0.00 0.00 1.94
2249 5242 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
2251 5244 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2252 5245 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
2253 5246 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
2254 5247 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
2255 5248 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
2256 5249 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
2257 5250 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
2303 5296 9.476202 AATAAGCAAATAAGTTCAACAAAGGTC 57.524 29.630 0.00 0.00 0.00 3.85
2304 5297 6.463995 AGCAAATAAGTTCAACAAAGGTCA 57.536 33.333 0.00 0.00 0.00 4.02
2305 5298 7.054491 AGCAAATAAGTTCAACAAAGGTCAT 57.946 32.000 0.00 0.00 0.00 3.06
2306 5299 8.177119 AGCAAATAAGTTCAACAAAGGTCATA 57.823 30.769 0.00 0.00 0.00 2.15
2307 5300 8.637986 AGCAAATAAGTTCAACAAAGGTCATAA 58.362 29.630 0.00 0.00 0.00 1.90
2308 5301 9.255304 GCAAATAAGTTCAACAAAGGTCATAAA 57.745 29.630 0.00 0.00 0.00 1.40
2310 5303 9.476202 AAATAAGTTCAACAAAGGTCATAAAGC 57.524 29.630 0.00 0.00 0.00 3.51
2311 5304 5.453567 AGTTCAACAAAGGTCATAAAGCC 57.546 39.130 0.00 0.00 0.00 4.35
2312 5305 4.023193 AGTTCAACAAAGGTCATAAAGCCG 60.023 41.667 0.00 0.00 0.00 5.52
2313 5306 3.745799 TCAACAAAGGTCATAAAGCCGA 58.254 40.909 0.00 0.00 0.00 5.54
2314 5307 4.138290 TCAACAAAGGTCATAAAGCCGAA 58.862 39.130 0.00 0.00 0.00 4.30
2315 5308 4.215399 TCAACAAAGGTCATAAAGCCGAAG 59.785 41.667 0.00 0.00 0.00 3.79
2334 5327 6.073327 CGAAGGGAAAGTAAAAGAAAAGCT 57.927 37.500 0.00 0.00 0.00 3.74
2335 5328 6.143496 CGAAGGGAAAGTAAAAGAAAAGCTC 58.857 40.000 0.00 0.00 0.00 4.09
2336 5329 6.238648 CGAAGGGAAAGTAAAAGAAAAGCTCA 60.239 38.462 0.00 0.00 0.00 4.26
2337 5330 6.392625 AGGGAAAGTAAAAGAAAAGCTCAC 57.607 37.500 0.00 0.00 0.00 3.51
2338 5331 5.891551 AGGGAAAGTAAAAGAAAAGCTCACA 59.108 36.000 0.00 0.00 0.00 3.58
2339 5332 6.551227 AGGGAAAGTAAAAGAAAAGCTCACAT 59.449 34.615 0.00 0.00 0.00 3.21
2340 5333 7.724061 AGGGAAAGTAAAAGAAAAGCTCACATA 59.276 33.333 0.00 0.00 0.00 2.29
2341 5334 8.023706 GGGAAAGTAAAAGAAAAGCTCACATAG 58.976 37.037 0.00 0.00 0.00 2.23
2342 5335 8.784043 GGAAAGTAAAAGAAAAGCTCACATAGA 58.216 33.333 0.00 0.00 0.00 1.98
2373 5366 5.352643 AAAAGTAACCATAGCGTCACAAC 57.647 39.130 0.00 0.00 0.00 3.32
2374 5367 2.968675 AGTAACCATAGCGTCACAACC 58.031 47.619 0.00 0.00 0.00 3.77
2375 5368 1.657094 GTAACCATAGCGTCACAACCG 59.343 52.381 0.00 0.00 0.00 4.44
2376 5369 0.672401 AACCATAGCGTCACAACCGG 60.672 55.000 0.00 0.00 0.00 5.28
2377 5370 2.461110 CCATAGCGTCACAACCGGC 61.461 63.158 0.00 0.00 0.00 6.13
2378 5371 2.125269 ATAGCGTCACAACCGGCC 60.125 61.111 0.00 0.00 0.00 6.13
2379 5372 4.728102 TAGCGTCACAACCGGCCG 62.728 66.667 21.04 21.04 0.00 6.13
2386 5379 4.652131 ACAACCGGCCGGCATCAA 62.652 61.111 43.58 0.00 39.32 2.57
2387 5380 4.114997 CAACCGGCCGGCATCAAC 62.115 66.667 43.58 9.46 39.32 3.18
2388 5381 4.652131 AACCGGCCGGCATCAACA 62.652 61.111 43.58 0.00 39.32 3.33
2389 5382 4.652131 ACCGGCCGGCATCAACAA 62.652 61.111 43.58 0.00 39.32 2.83
2390 5383 3.814268 CCGGCCGGCATCAACAAG 61.814 66.667 34.96 3.26 0.00 3.16
2391 5384 2.745884 CGGCCGGCATCAACAAGA 60.746 61.111 30.85 0.00 0.00 3.02
2392 5385 2.114670 CGGCCGGCATCAACAAGAT 61.115 57.895 30.85 0.00 37.48 2.40
2393 5386 0.813610 CGGCCGGCATCAACAAGATA 60.814 55.000 30.85 0.00 34.43 1.98
2394 5387 1.388547 GGCCGGCATCAACAAGATAA 58.611 50.000 30.85 0.00 34.43 1.75
2395 5388 1.334869 GGCCGGCATCAACAAGATAAG 59.665 52.381 30.85 0.00 34.43 1.73
2396 5389 1.334869 GCCGGCATCAACAAGATAAGG 59.665 52.381 24.80 0.00 34.43 2.69
2397 5390 2.917933 CCGGCATCAACAAGATAAGGA 58.082 47.619 0.00 0.00 34.43 3.36
2398 5391 3.278574 CCGGCATCAACAAGATAAGGAA 58.721 45.455 0.00 0.00 34.43 3.36
2399 5392 3.694072 CCGGCATCAACAAGATAAGGAAA 59.306 43.478 0.00 0.00 34.43 3.13
2400 5393 4.438744 CCGGCATCAACAAGATAAGGAAAC 60.439 45.833 0.00 0.00 34.43 2.78
2401 5394 4.396166 CGGCATCAACAAGATAAGGAAACT 59.604 41.667 0.00 0.00 37.21 2.66
2402 5395 5.584649 CGGCATCAACAAGATAAGGAAACTA 59.415 40.000 0.00 0.00 34.94 2.24
2403 5396 6.093495 CGGCATCAACAAGATAAGGAAACTAA 59.907 38.462 0.00 0.00 34.94 2.24
2404 5397 7.201732 CGGCATCAACAAGATAAGGAAACTAAT 60.202 37.037 0.00 0.00 34.94 1.73
2405 5398 8.470002 GGCATCAACAAGATAAGGAAACTAATT 58.530 33.333 0.00 0.00 34.94 1.40
2406 5399 9.294030 GCATCAACAAGATAAGGAAACTAATTG 57.706 33.333 0.00 0.00 34.94 2.32
2407 5400 9.294030 CATCAACAAGATAAGGAAACTAATTGC 57.706 33.333 0.00 0.00 34.94 3.56
2408 5401 7.826690 TCAACAAGATAAGGAAACTAATTGCC 58.173 34.615 0.00 0.00 42.68 4.52
2409 5402 7.669722 TCAACAAGATAAGGAAACTAATTGCCT 59.330 33.333 0.00 0.00 42.68 4.75
2410 5403 8.956426 CAACAAGATAAGGAAACTAATTGCCTA 58.044 33.333 0.00 0.00 42.68 3.93
2411 5404 9.700831 AACAAGATAAGGAAACTAATTGCCTAT 57.299 29.630 0.00 0.00 42.68 2.57
2412 5405 9.343539 ACAAGATAAGGAAACTAATTGCCTATC 57.656 33.333 0.00 0.00 42.68 2.08
2413 5406 8.787852 CAAGATAAGGAAACTAATTGCCTATCC 58.212 37.037 0.00 0.00 42.68 2.59
2414 5407 8.281529 AGATAAGGAAACTAATTGCCTATCCT 57.718 34.615 0.00 0.00 42.68 3.24
2415 5408 9.393786 AGATAAGGAAACTAATTGCCTATCCTA 57.606 33.333 0.00 0.00 42.68 2.94
2419 5412 9.794719 AAGGAAACTAATTGCCTATCCTATTAC 57.205 33.333 0.00 0.00 42.68 1.89
2420 5413 8.945193 AGGAAACTAATTGCCTATCCTATTACA 58.055 33.333 0.00 0.00 40.61 2.41
2421 5414 9.740710 GGAAACTAATTGCCTATCCTATTACAT 57.259 33.333 0.00 0.00 0.00 2.29
2424 5417 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
2425 5418 8.322091 ACTAATTGCCTATCCTATTACATGACC 58.678 37.037 0.00 0.00 0.00 4.02
2426 5419 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
2427 5420 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
2428 5421 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
2429 5422 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
2430 5423 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
2431 5424 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
2432 5425 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
2433 5426 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
2434 5427 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
2435 5428 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
2436 5429 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
2437 5430 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
2438 5431 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
2439 5432 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
2441 5434 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
2442 5435 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
2443 5436 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
2444 5437 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
2445 5438 0.676736 GCCATCCAAACCGGTTGAAA 59.323 50.000 23.08 9.50 39.87 2.69
2446 5439 1.069358 GCCATCCAAACCGGTTGAAAA 59.931 47.619 23.08 7.52 39.87 2.29
2447 5440 2.289382 GCCATCCAAACCGGTTGAAAAT 60.289 45.455 23.08 9.65 39.87 1.82
2448 5441 3.056465 GCCATCCAAACCGGTTGAAAATA 60.056 43.478 23.08 4.03 39.87 1.40
2449 5442 4.382577 GCCATCCAAACCGGTTGAAAATAT 60.383 41.667 23.08 6.33 39.87 1.28
2450 5443 5.348164 CCATCCAAACCGGTTGAAAATATC 58.652 41.667 23.08 0.00 39.87 1.63
2451 5444 5.348164 CATCCAAACCGGTTGAAAATATCC 58.652 41.667 23.08 0.00 39.87 2.59
2452 5445 3.764972 TCCAAACCGGTTGAAAATATCCC 59.235 43.478 23.08 0.00 39.87 3.85
2453 5446 3.428316 CCAAACCGGTTGAAAATATCCCG 60.428 47.826 23.08 0.00 39.87 5.14
2454 5447 2.793288 ACCGGTTGAAAATATCCCGT 57.207 45.000 0.00 0.00 36.98 5.28
2455 5448 3.910568 ACCGGTTGAAAATATCCCGTA 57.089 42.857 0.00 0.00 36.98 4.02
2456 5449 3.534554 ACCGGTTGAAAATATCCCGTAC 58.465 45.455 0.00 0.00 36.98 3.67
2457 5450 3.198417 ACCGGTTGAAAATATCCCGTACT 59.802 43.478 0.00 0.00 36.98 2.73
2458 5451 4.405358 ACCGGTTGAAAATATCCCGTACTA 59.595 41.667 0.00 0.00 36.98 1.82
2459 5452 4.746611 CCGGTTGAAAATATCCCGTACTAC 59.253 45.833 0.00 0.00 36.98 2.73
2460 5453 4.746611 CGGTTGAAAATATCCCGTACTACC 59.253 45.833 0.00 0.00 34.10 3.18
2461 5454 5.673514 GGTTGAAAATATCCCGTACTACCA 58.326 41.667 0.00 0.00 0.00 3.25
2462 5455 6.293698 GGTTGAAAATATCCCGTACTACCAT 58.706 40.000 0.00 0.00 0.00 3.55
2463 5456 6.426025 GGTTGAAAATATCCCGTACTACCATC 59.574 42.308 0.00 0.00 0.00 3.51
2464 5457 6.989155 TGAAAATATCCCGTACTACCATCT 57.011 37.500 0.00 0.00 0.00 2.90
2465 5458 6.989659 TGAAAATATCCCGTACTACCATCTC 58.010 40.000 0.00 0.00 0.00 2.75
2466 5459 5.997384 AAATATCCCGTACTACCATCTCC 57.003 43.478 0.00 0.00 0.00 3.71
2467 5460 2.305858 ATCCCGTACTACCATCTCCC 57.694 55.000 0.00 0.00 0.00 4.30
2468 5461 0.928505 TCCCGTACTACCATCTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
2469 5462 1.038280 CCCGTACTACCATCTCCCAC 58.962 60.000 0.00 0.00 0.00 4.61
2470 5463 1.038280 CCGTACTACCATCTCCCACC 58.962 60.000 0.00 0.00 0.00 4.61
2471 5464 0.666913 CGTACTACCATCTCCCACCG 59.333 60.000 0.00 0.00 0.00 4.94
2472 5465 1.038280 GTACTACCATCTCCCACCGG 58.962 60.000 0.00 0.00 0.00 5.28
2473 5466 0.928505 TACTACCATCTCCCACCGGA 59.071 55.000 9.46 0.00 36.45 5.14
2474 5467 0.264955 ACTACCATCTCCCACCGGAT 59.735 55.000 9.46 0.00 37.60 4.18
2475 5468 1.502039 ACTACCATCTCCCACCGGATA 59.498 52.381 9.46 0.00 37.60 2.59
2476 5469 2.171840 CTACCATCTCCCACCGGATAG 58.828 57.143 9.46 0.00 37.60 2.08
2477 5470 0.561184 ACCATCTCCCACCGGATAGA 59.439 55.000 9.46 5.29 37.60 1.98
2478 5471 1.150135 ACCATCTCCCACCGGATAGAT 59.850 52.381 9.46 7.62 37.60 1.98
2479 5472 1.827969 CCATCTCCCACCGGATAGATC 59.172 57.143 9.46 0.00 37.60 2.75
2480 5473 1.827969 CATCTCCCACCGGATAGATCC 59.172 57.143 9.46 0.00 43.65 3.36
2493 5486 3.808174 GGATAGATCCAGTAACCAAACGC 59.192 47.826 3.54 0.00 46.38 4.84
2494 5487 4.443034 GGATAGATCCAGTAACCAAACGCT 60.443 45.833 3.54 0.00 46.38 5.07
2495 5488 2.973945 AGATCCAGTAACCAAACGCTC 58.026 47.619 0.00 0.00 0.00 5.03
2496 5489 2.007608 GATCCAGTAACCAAACGCTCC 58.992 52.381 0.00 0.00 0.00 4.70
2497 5490 0.320073 TCCAGTAACCAAACGCTCCG 60.320 55.000 0.00 0.00 0.00 4.63
2498 5491 0.601841 CCAGTAACCAAACGCTCCGT 60.602 55.000 0.00 0.00 43.97 4.69
2499 5492 0.511221 CAGTAACCAAACGCTCCGTG 59.489 55.000 0.00 0.00 39.99 4.94
2500 5493 0.601841 AGTAACCAAACGCTCCGTGG 60.602 55.000 0.00 0.00 39.99 4.94
2501 5494 1.962306 TAACCAAACGCTCCGTGGC 60.962 57.895 0.00 0.00 39.99 5.01
2504 5497 3.423154 CAAACGCTCCGTGGCCTC 61.423 66.667 3.32 0.00 39.99 4.70
2505 5498 4.699522 AAACGCTCCGTGGCCTCC 62.700 66.667 3.32 0.00 39.99 4.30
2520 5513 1.722677 CTCCGTCGGAGTGAGTAGC 59.277 63.158 29.66 0.00 44.25 3.58
2521 5514 2.037913 CTCCGTCGGAGTGAGTAGCG 62.038 65.000 29.66 5.10 44.25 4.26
2522 5515 2.104859 CCGTCGGAGTGAGTAGCGA 61.105 63.158 4.91 0.00 0.00 4.93
2523 5516 1.060622 CGTCGGAGTGAGTAGCGAC 59.939 63.158 0.00 0.00 0.00 5.19
2524 5517 1.428620 GTCGGAGTGAGTAGCGACC 59.571 63.158 0.00 0.00 0.00 4.79
2525 5518 1.002990 TCGGAGTGAGTAGCGACCA 60.003 57.895 0.00 0.00 0.00 4.02
2526 5519 1.136984 CGGAGTGAGTAGCGACCAC 59.863 63.158 9.46 9.46 0.00 4.16
2527 5520 1.583495 CGGAGTGAGTAGCGACCACA 61.583 60.000 16.49 6.02 32.33 4.17
2528 5521 0.818296 GGAGTGAGTAGCGACCACAT 59.182 55.000 16.49 6.07 32.33 3.21
2529 5522 2.022195 GGAGTGAGTAGCGACCACATA 58.978 52.381 16.49 0.00 32.33 2.29
2530 5523 2.223525 GGAGTGAGTAGCGACCACATAC 60.224 54.545 16.49 9.69 32.33 2.39
2531 5524 1.400846 AGTGAGTAGCGACCACATACG 59.599 52.381 16.49 0.00 32.33 3.06
2532 5525 0.736636 TGAGTAGCGACCACATACGG 59.263 55.000 0.00 0.00 0.00 4.02
2533 5526 1.019673 GAGTAGCGACCACATACGGA 58.980 55.000 0.00 0.00 0.00 4.69
2534 5527 1.607628 GAGTAGCGACCACATACGGAT 59.392 52.381 0.00 0.00 0.00 4.18
2535 5528 1.607628 AGTAGCGACCACATACGGATC 59.392 52.381 0.00 0.00 0.00 3.36
2536 5529 1.335810 GTAGCGACCACATACGGATCA 59.664 52.381 0.00 0.00 0.00 2.92
2537 5530 0.821517 AGCGACCACATACGGATCAA 59.178 50.000 0.00 0.00 0.00 2.57
2538 5531 1.412710 AGCGACCACATACGGATCAAT 59.587 47.619 0.00 0.00 0.00 2.57
2539 5532 1.526887 GCGACCACATACGGATCAATG 59.473 52.381 0.00 0.00 0.00 2.82
2540 5533 1.526887 CGACCACATACGGATCAATGC 59.473 52.381 0.00 0.00 0.00 3.56
2541 5534 2.560504 GACCACATACGGATCAATGCA 58.439 47.619 0.00 0.00 0.00 3.96
2542 5535 2.545526 GACCACATACGGATCAATGCAG 59.454 50.000 0.00 0.00 0.00 4.41
2543 5536 2.092968 ACCACATACGGATCAATGCAGT 60.093 45.455 0.00 0.00 0.00 4.40
2544 5537 2.288729 CCACATACGGATCAATGCAGTG 59.711 50.000 8.08 8.08 0.00 3.66
2545 5538 2.288729 CACATACGGATCAATGCAGTGG 59.711 50.000 15.06 0.03 0.00 4.00
2546 5539 1.265095 CATACGGATCAATGCAGTGGC 59.735 52.381 15.06 6.84 41.68 5.01
2547 5540 0.541392 TACGGATCAATGCAGTGGCT 59.459 50.000 15.06 1.79 41.91 4.75
2548 5541 0.745845 ACGGATCAATGCAGTGGCTC 60.746 55.000 15.06 11.22 41.91 4.70
2549 5542 1.769098 CGGATCAATGCAGTGGCTCG 61.769 60.000 15.06 11.30 41.91 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.895100 TGGCGGCTTCTTTCAAGCAT 60.895 50.000 11.43 0.00 44.71 3.79
75 76 4.327898 GTCTATGAAACGATTAACCGCACA 59.672 41.667 0.00 0.00 0.00 4.57
126 127 3.058224 CCCGTCTTCAGGTTCAAATCAAC 60.058 47.826 0.00 0.00 0.00 3.18
176 177 4.038402 GGAAAAGACATCTATGGGCATTGG 59.962 45.833 0.00 0.00 0.00 3.16
177 178 4.891756 AGGAAAAGACATCTATGGGCATTG 59.108 41.667 0.00 0.00 0.00 2.82
178 179 4.891756 CAGGAAAAGACATCTATGGGCATT 59.108 41.667 0.00 0.00 0.00 3.56
179 180 4.079558 ACAGGAAAAGACATCTATGGGCAT 60.080 41.667 0.00 0.00 0.00 4.40
230 260 4.208686 GACTAGCAGGGGTCGCGG 62.209 72.222 6.13 0.00 0.00 6.46
237 267 5.336055 CGATACCAAGAATAGACTAGCAGGG 60.336 48.000 0.00 0.00 0.00 4.45
244 274 3.243907 GCCTGCGATACCAAGAATAGACT 60.244 47.826 0.00 0.00 0.00 3.24
246 276 2.288213 CGCCTGCGATACCAAGAATAGA 60.288 50.000 5.43 0.00 42.83 1.98
270 300 1.884926 GATGAAGAAGGCGCCGAGG 60.885 63.158 23.20 0.00 0.00 4.63
274 304 1.576356 CAGTAGATGAAGAAGGCGCC 58.424 55.000 21.89 21.89 0.00 6.53
303 409 2.128035 CCGCCGTCATTATCAGAACTC 58.872 52.381 0.00 0.00 0.00 3.01
305 411 1.593006 CACCGCCGTCATTATCAGAAC 59.407 52.381 0.00 0.00 0.00 3.01
308 414 2.154854 ATCACCGCCGTCATTATCAG 57.845 50.000 0.00 0.00 0.00 2.90
318 424 1.434555 TACTGTCAAAATCACCGCCG 58.565 50.000 0.00 0.00 0.00 6.46
321 427 5.418310 AGTGTTTACTGTCAAAATCACCG 57.582 39.130 0.00 0.00 35.34 4.94
340 446 3.125146 CACCACATACACGATTTCCAGTG 59.875 47.826 0.00 0.00 43.46 3.66
341 447 3.244422 ACACCACATACACGATTTCCAGT 60.244 43.478 0.00 0.00 0.00 4.00
351 457 5.277857 AGATTAGGCTACACCACATACAC 57.722 43.478 0.00 0.00 43.14 2.90
396 505 1.837051 TACCAGGGGCGCCATAGAG 60.837 63.158 30.85 14.88 0.00 2.43
399 508 3.165685 GGTACCAGGGGCGCCATA 61.166 66.667 30.85 9.14 0.00 2.74
414 523 2.775384 TCCATAACCGAAGCATAAGGGT 59.225 45.455 0.00 0.00 0.00 4.34
419 528 2.047061 AGCCTCCATAACCGAAGCATA 58.953 47.619 0.00 0.00 0.00 3.14
420 529 0.839946 AGCCTCCATAACCGAAGCAT 59.160 50.000 0.00 0.00 0.00 3.79
422 531 0.815615 CCAGCCTCCATAACCGAAGC 60.816 60.000 0.00 0.00 0.00 3.86
425 534 0.758734 CATCCAGCCTCCATAACCGA 59.241 55.000 0.00 0.00 0.00 4.69
437 546 0.610174 TCCTCACACTGACATCCAGC 59.390 55.000 0.00 0.00 46.81 4.85
440 549 0.603569 ACGTCCTCACACTGACATCC 59.396 55.000 0.00 0.00 0.00 3.51
441 550 2.288213 TGAACGTCCTCACACTGACATC 60.288 50.000 0.00 0.00 0.00 3.06
445 554 1.000843 CCATGAACGTCCTCACACTGA 59.999 52.381 0.00 0.00 0.00 3.41
469 810 2.496070 CCGAACATTACCTCCAGACTCA 59.504 50.000 0.00 0.00 0.00 3.41
475 816 4.829872 ACATAACCGAACATTACCTCCA 57.170 40.909 0.00 0.00 0.00 3.86
477 818 4.939439 ACCAACATAACCGAACATTACCTC 59.061 41.667 0.00 0.00 0.00 3.85
478 819 4.913784 ACCAACATAACCGAACATTACCT 58.086 39.130 0.00 0.00 0.00 3.08
479 820 5.632244 AACCAACATAACCGAACATTACC 57.368 39.130 0.00 0.00 0.00 2.85
480 821 9.706846 GTATAAACCAACATAACCGAACATTAC 57.293 33.333 0.00 0.00 0.00 1.89
481 822 9.669887 AGTATAAACCAACATAACCGAACATTA 57.330 29.630 0.00 0.00 0.00 1.90
482 823 8.570068 AGTATAAACCAACATAACCGAACATT 57.430 30.769 0.00 0.00 0.00 2.71
483 824 9.841295 ATAGTATAAACCAACATAACCGAACAT 57.159 29.630 0.00 0.00 0.00 2.71
484 825 9.316730 GATAGTATAAACCAACATAACCGAACA 57.683 33.333 0.00 0.00 0.00 3.18
485 826 9.538508 AGATAGTATAAACCAACATAACCGAAC 57.461 33.333 0.00 0.00 0.00 3.95
486 827 9.537192 CAGATAGTATAAACCAACATAACCGAA 57.463 33.333 0.00 0.00 0.00 4.30
487 828 8.698210 ACAGATAGTATAAACCAACATAACCGA 58.302 33.333 0.00 0.00 0.00 4.69
492 833 9.996554 CCATGACAGATAGTATAAACCAACATA 57.003 33.333 0.00 0.00 0.00 2.29
573 932 0.984230 ATCAACCCAAGGAGAAGCGA 59.016 50.000 0.00 0.00 0.00 4.93
605 964 9.208022 CCATGTAGTATCAATGATACGTCAAAT 57.792 33.333 22.99 12.72 46.52 2.32
612 971 9.982651 ACAGTAACCATGTAGTATCAATGATAC 57.017 33.333 22.14 22.14 43.52 2.24
635 999 6.866179 GTACATTTGTACTCCGAACTACAG 57.134 41.667 12.51 0.00 45.47 2.74
660 1024 2.165845 AGTGTATTGGTACTCCGAGTGC 59.834 50.000 11.52 9.72 36.30 4.40
664 1028 2.421073 CGACAGTGTATTGGTACTCCGA 59.579 50.000 0.00 0.00 36.30 4.55
665 1029 2.793933 CGACAGTGTATTGGTACTCCG 58.206 52.381 0.00 0.00 36.30 4.63
666 1030 2.537401 GCGACAGTGTATTGGTACTCC 58.463 52.381 0.00 0.00 0.00 3.85
670 1039 0.173935 CCCGCGACAGTGTATTGGTA 59.826 55.000 8.23 0.00 0.00 3.25
684 1053 1.940883 TAGTACTTGTGCTCCCCGCG 61.941 60.000 0.00 0.00 43.27 6.46
689 1058 4.022242 TCTGAACTGTAGTACTTGTGCTCC 60.022 45.833 0.00 0.00 0.00 4.70
703 1072 3.871594 GTGCACTTTGTACTCTGAACTGT 59.128 43.478 10.32 0.00 30.04 3.55
772 1200 2.224426 TGCTCCCTTCAACAATGTACGT 60.224 45.455 0.00 0.00 0.00 3.57
773 1201 2.159627 GTGCTCCCTTCAACAATGTACG 59.840 50.000 0.00 0.00 0.00 3.67
805 1233 6.368779 AGTTTACTTGCACTTCCCTATGTA 57.631 37.500 0.00 0.00 0.00 2.29
807 1235 6.170506 TGTAGTTTACTTGCACTTCCCTATG 58.829 40.000 0.00 0.00 0.00 2.23
809 1237 5.306160 ACTGTAGTTTACTTGCACTTCCCTA 59.694 40.000 0.00 0.00 0.00 3.53
810 1238 4.102681 ACTGTAGTTTACTTGCACTTCCCT 59.897 41.667 0.00 0.00 0.00 4.20
811 1239 4.386711 ACTGTAGTTTACTTGCACTTCCC 58.613 43.478 0.00 0.00 0.00 3.97
812 1240 6.199393 CAAACTGTAGTTTACTTGCACTTCC 58.801 40.000 9.47 0.00 45.54 3.46
813 1241 6.037830 TCCAAACTGTAGTTTACTTGCACTTC 59.962 38.462 9.47 0.00 45.54 3.01
863 1291 5.950965 TCTTGTAGCGATCTTCGAAATTC 57.049 39.130 0.00 0.00 43.74 2.17
940 3679 5.244851 TGCTGTGGGCTGATTTATTTTGTTA 59.755 36.000 0.00 0.00 42.39 2.41
980 3719 1.784856 AGCGCGCATAAATGTACGTAG 59.215 47.619 35.10 0.00 33.09 3.51
981 3720 1.842720 AGCGCGCATAAATGTACGTA 58.157 45.000 35.10 0.00 33.09 3.57
982 3721 1.003851 AAGCGCGCATAAATGTACGT 58.996 45.000 35.10 4.19 33.09 3.57
983 3722 2.914816 TAAGCGCGCATAAATGTACG 57.085 45.000 35.10 3.40 0.00 3.67
984 3723 6.302313 CCTTAAATAAGCGCGCATAAATGTAC 59.698 38.462 35.10 0.00 32.02 2.90
1020 3759 1.124780 GAGGGAGGGGAAGAAGTAGC 58.875 60.000 0.00 0.00 0.00 3.58
1021 3760 1.693083 GGGAGGGAGGGGAAGAAGTAG 60.693 61.905 0.00 0.00 0.00 2.57
1022 3761 0.342313 GGGAGGGAGGGGAAGAAGTA 59.658 60.000 0.00 0.00 0.00 2.24
1035 3774 2.606519 TGACGTTGGGAGGGAGGG 60.607 66.667 0.00 0.00 0.00 4.30
1038 3777 1.052124 AGTTGTGACGTTGGGAGGGA 61.052 55.000 0.00 0.00 0.00 4.20
1039 3778 0.602905 GAGTTGTGACGTTGGGAGGG 60.603 60.000 0.00 0.00 0.00 4.30
1050 3797 1.658994 GTGTTGGTTCGGAGTTGTGA 58.341 50.000 0.00 0.00 0.00 3.58
1112 3860 2.936202 TGCTGCTTCCTTCTCTTGTTT 58.064 42.857 0.00 0.00 0.00 2.83
1113 3861 2.645838 TGCTGCTTCCTTCTCTTGTT 57.354 45.000 0.00 0.00 0.00 2.83
1114 3862 2.502295 CTTGCTGCTTCCTTCTCTTGT 58.498 47.619 0.00 0.00 0.00 3.16
1203 3976 3.408501 CTGCGCTGGAGGAGACGAG 62.409 68.421 9.73 0.00 0.00 4.18
1258 4040 4.405548 GGGATGTATAAGTACCTCTCCGT 58.594 47.826 0.00 0.00 0.00 4.69
1280 4062 8.532341 GTCTTGTTCTATATACACACACATTCG 58.468 37.037 0.00 0.00 0.00 3.34
1294 4076 9.591792 CAAACATCTCTCATGTCTTGTTCTATA 57.408 33.333 0.00 0.00 0.00 1.31
1295 4077 7.551974 CCAAACATCTCTCATGTCTTGTTCTAT 59.448 37.037 0.00 0.00 0.00 1.98
1296 4078 6.875726 CCAAACATCTCTCATGTCTTGTTCTA 59.124 38.462 0.00 0.00 0.00 2.10
1297 4079 5.704515 CCAAACATCTCTCATGTCTTGTTCT 59.295 40.000 0.00 0.00 0.00 3.01
1298 4080 5.702670 TCCAAACATCTCTCATGTCTTGTTC 59.297 40.000 0.00 0.00 0.00 3.18
1299 4081 5.471456 GTCCAAACATCTCTCATGTCTTGTT 59.529 40.000 0.00 0.00 0.00 2.83
1300 4082 4.999950 GTCCAAACATCTCTCATGTCTTGT 59.000 41.667 0.00 0.00 0.00 3.16
1301 4083 4.092529 CGTCCAAACATCTCTCATGTCTTG 59.907 45.833 0.00 0.00 0.00 3.02
1302 4084 4.248859 CGTCCAAACATCTCTCATGTCTT 58.751 43.478 0.00 0.00 0.00 3.01
1303 4085 3.854666 CGTCCAAACATCTCTCATGTCT 58.145 45.455 0.00 0.00 0.00 3.41
1339 4121 1.582680 CGTTAATTCGCCTTGCCGC 60.583 57.895 0.00 0.00 0.00 6.53
1343 4125 1.732259 AGCAGACGTTAATTCGCCTTG 59.268 47.619 0.00 0.00 0.00 3.61
1344 4126 1.732259 CAGCAGACGTTAATTCGCCTT 59.268 47.619 0.00 0.00 0.00 4.35
1345 4127 1.359848 CAGCAGACGTTAATTCGCCT 58.640 50.000 0.00 0.00 0.00 5.52
1346 4128 0.373716 CCAGCAGACGTTAATTCGCC 59.626 55.000 0.00 0.00 0.00 5.54
1347 4129 0.247695 GCCAGCAGACGTTAATTCGC 60.248 55.000 0.00 0.00 0.00 4.70
1398 4180 3.939837 CTGAAGAAGCTCGCCGCCA 62.940 63.158 0.00 0.00 40.39 5.69
1570 4360 5.114764 TGATGCTATGATTTCAGTCCCAA 57.885 39.130 0.00 0.00 0.00 4.12
1612 4402 6.485171 ACTGCCCAGTTACTGATAAAATCTT 58.515 36.000 14.66 0.00 38.83 2.40
1650 4440 0.378257 CAATCAAGTGCCCCGATTCG 59.622 55.000 0.00 0.00 0.00 3.34
1660 4451 9.416794 CTCTACCAGCTTATATACAATCAAGTG 57.583 37.037 0.00 0.00 0.00 3.16
1754 4546 4.262617 GGTGACCTACAAGATTCTTTCCC 58.737 47.826 0.00 0.00 0.00 3.97
1794 4586 6.436261 CATCACCCGTACACAATAGTAGTAG 58.564 44.000 0.00 0.00 0.00 2.57
1796 4588 4.441079 GCATCACCCGTACACAATAGTAGT 60.441 45.833 0.00 0.00 0.00 2.73
1802 4594 2.418368 ATGCATCACCCGTACACAAT 57.582 45.000 0.00 0.00 0.00 2.71
1810 4602 4.368874 TGAACAAATAATGCATCACCCG 57.631 40.909 0.00 0.00 0.00 5.28
1837 4631 4.624913 AGGGACATGGAGACTAGATTTCA 58.375 43.478 0.00 0.00 0.00 2.69
1846 4640 1.611491 GATCGAGAGGGACATGGAGAC 59.389 57.143 0.00 0.00 0.00 3.36
1849 4643 1.063642 AGTGATCGAGAGGGACATGGA 60.064 52.381 0.00 0.00 0.00 3.41
1867 4661 3.137176 AGCTTACATGCATATGGGTCAGT 59.863 43.478 0.00 0.00 38.66 3.41
1946 4928 1.466360 GCAAGCGTTCAAGCATCGATT 60.466 47.619 0.00 0.00 40.15 3.34
1947 4929 0.097674 GCAAGCGTTCAAGCATCGAT 59.902 50.000 0.00 0.00 40.15 3.59
1948 4930 1.227342 TGCAAGCGTTCAAGCATCGA 61.227 50.000 0.00 0.00 40.15 3.59
1949 4931 0.791983 CTGCAAGCGTTCAAGCATCG 60.792 55.000 0.00 0.00 40.15 3.84
1971 4956 5.399991 ACCATAATCTAATCCCGTGGTCTA 58.600 41.667 0.00 0.00 33.47 2.59
2105 5095 2.590007 CTGCCCATCTGCGTAGGC 60.590 66.667 0.00 0.00 45.96 3.93
2232 5225 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
2234 5227 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2235 5228 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
2236 5229 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
2237 5230 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
2238 5231 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
2239 5232 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
2277 5270 9.476202 GACCTTTGTTGAACTTATTTGCTTATT 57.524 29.630 0.00 0.00 0.00 1.40
2278 5271 8.637986 TGACCTTTGTTGAACTTATTTGCTTAT 58.362 29.630 0.00 0.00 0.00 1.73
2279 5272 8.001881 TGACCTTTGTTGAACTTATTTGCTTA 57.998 30.769 0.00 0.00 0.00 3.09
2280 5273 6.872920 TGACCTTTGTTGAACTTATTTGCTT 58.127 32.000 0.00 0.00 0.00 3.91
2281 5274 6.463995 TGACCTTTGTTGAACTTATTTGCT 57.536 33.333 0.00 0.00 0.00 3.91
2282 5275 8.810652 TTATGACCTTTGTTGAACTTATTTGC 57.189 30.769 0.00 0.00 0.00 3.68
2284 5277 9.476202 GCTTTATGACCTTTGTTGAACTTATTT 57.524 29.630 0.00 0.00 0.00 1.40
2285 5278 8.088365 GGCTTTATGACCTTTGTTGAACTTATT 58.912 33.333 0.00 0.00 0.00 1.40
2286 5279 7.574967 CGGCTTTATGACCTTTGTTGAACTTAT 60.575 37.037 0.00 0.00 0.00 1.73
2287 5280 6.293735 CGGCTTTATGACCTTTGTTGAACTTA 60.294 38.462 0.00 0.00 0.00 2.24
2288 5281 5.507315 CGGCTTTATGACCTTTGTTGAACTT 60.507 40.000 0.00 0.00 0.00 2.66
2289 5282 4.023193 CGGCTTTATGACCTTTGTTGAACT 60.023 41.667 0.00 0.00 0.00 3.01
2290 5283 4.023536 TCGGCTTTATGACCTTTGTTGAAC 60.024 41.667 0.00 0.00 0.00 3.18
2291 5284 4.138290 TCGGCTTTATGACCTTTGTTGAA 58.862 39.130 0.00 0.00 0.00 2.69
2292 5285 3.745799 TCGGCTTTATGACCTTTGTTGA 58.254 40.909 0.00 0.00 0.00 3.18
2293 5286 4.475944 CTTCGGCTTTATGACCTTTGTTG 58.524 43.478 0.00 0.00 0.00 3.33
2294 5287 3.506067 CCTTCGGCTTTATGACCTTTGTT 59.494 43.478 0.00 0.00 0.00 2.83
2295 5288 3.081804 CCTTCGGCTTTATGACCTTTGT 58.918 45.455 0.00 0.00 0.00 2.83
2296 5289 2.423538 CCCTTCGGCTTTATGACCTTTG 59.576 50.000 0.00 0.00 0.00 2.77
2297 5290 2.307686 TCCCTTCGGCTTTATGACCTTT 59.692 45.455 0.00 0.00 0.00 3.11
2298 5291 1.913419 TCCCTTCGGCTTTATGACCTT 59.087 47.619 0.00 0.00 0.00 3.50
2299 5292 1.580059 TCCCTTCGGCTTTATGACCT 58.420 50.000 0.00 0.00 0.00 3.85
2300 5293 2.413310 TTCCCTTCGGCTTTATGACC 57.587 50.000 0.00 0.00 0.00 4.02
2301 5294 3.344515 ACTTTCCCTTCGGCTTTATGAC 58.655 45.455 0.00 0.00 0.00 3.06
2302 5295 3.713826 ACTTTCCCTTCGGCTTTATGA 57.286 42.857 0.00 0.00 0.00 2.15
2303 5296 5.890424 TTTACTTTCCCTTCGGCTTTATG 57.110 39.130 0.00 0.00 0.00 1.90
2304 5297 6.243148 TCTTTTACTTTCCCTTCGGCTTTAT 58.757 36.000 0.00 0.00 0.00 1.40
2305 5298 5.623169 TCTTTTACTTTCCCTTCGGCTTTA 58.377 37.500 0.00 0.00 0.00 1.85
2306 5299 4.466827 TCTTTTACTTTCCCTTCGGCTTT 58.533 39.130 0.00 0.00 0.00 3.51
2307 5300 4.094830 TCTTTTACTTTCCCTTCGGCTT 57.905 40.909 0.00 0.00 0.00 4.35
2308 5301 3.782656 TCTTTTACTTTCCCTTCGGCT 57.217 42.857 0.00 0.00 0.00 5.52
2309 5302 4.841443 TTTCTTTTACTTTCCCTTCGGC 57.159 40.909 0.00 0.00 0.00 5.54
2310 5303 5.009710 AGCTTTTCTTTTACTTTCCCTTCGG 59.990 40.000 0.00 0.00 0.00 4.30
2311 5304 6.073327 AGCTTTTCTTTTACTTTCCCTTCG 57.927 37.500 0.00 0.00 0.00 3.79
2312 5305 6.918569 GTGAGCTTTTCTTTTACTTTCCCTTC 59.081 38.462 0.00 0.00 0.00 3.46
2313 5306 6.379988 TGTGAGCTTTTCTTTTACTTTCCCTT 59.620 34.615 0.00 0.00 0.00 3.95
2314 5307 5.891551 TGTGAGCTTTTCTTTTACTTTCCCT 59.108 36.000 0.00 0.00 0.00 4.20
2315 5308 6.144078 TGTGAGCTTTTCTTTTACTTTCCC 57.856 37.500 0.00 0.00 0.00 3.97
2316 5309 8.784043 TCTATGTGAGCTTTTCTTTTACTTTCC 58.216 33.333 0.00 0.00 0.00 3.13
2317 5310 9.818796 CTCTATGTGAGCTTTTCTTTTACTTTC 57.181 33.333 0.00 0.00 35.84 2.62
2350 5343 5.278120 GGTTGTGACGCTATGGTTACTTTTT 60.278 40.000 0.00 0.00 0.00 1.94
2351 5344 4.214758 GGTTGTGACGCTATGGTTACTTTT 59.785 41.667 0.00 0.00 0.00 2.27
2352 5345 3.749609 GGTTGTGACGCTATGGTTACTTT 59.250 43.478 0.00 0.00 0.00 2.66
2353 5346 3.332034 GGTTGTGACGCTATGGTTACTT 58.668 45.455 0.00 0.00 0.00 2.24
2354 5347 2.673043 CGGTTGTGACGCTATGGTTACT 60.673 50.000 0.00 0.00 0.00 2.24
2355 5348 1.657094 CGGTTGTGACGCTATGGTTAC 59.343 52.381 0.00 0.00 0.00 2.50
2356 5349 1.404449 CCGGTTGTGACGCTATGGTTA 60.404 52.381 0.00 0.00 0.00 2.85
2357 5350 0.672401 CCGGTTGTGACGCTATGGTT 60.672 55.000 0.00 0.00 0.00 3.67
2358 5351 1.079405 CCGGTTGTGACGCTATGGT 60.079 57.895 0.00 0.00 0.00 3.55
2359 5352 2.461110 GCCGGTTGTGACGCTATGG 61.461 63.158 1.90 0.00 0.00 2.74
2360 5353 2.461110 GGCCGGTTGTGACGCTATG 61.461 63.158 1.90 0.00 0.00 2.23
2361 5354 2.125269 GGCCGGTTGTGACGCTAT 60.125 61.111 1.90 0.00 0.00 2.97
2362 5355 4.728102 CGGCCGGTTGTGACGCTA 62.728 66.667 20.10 0.00 0.00 4.26
2369 5362 4.652131 TTGATGCCGGCCGGTTGT 62.652 61.111 42.53 29.01 37.65 3.32
2370 5363 4.114997 GTTGATGCCGGCCGGTTG 62.115 66.667 42.53 20.78 37.65 3.77
2371 5364 4.652131 TGTTGATGCCGGCCGGTT 62.652 61.111 42.53 31.14 37.65 4.44
2372 5365 4.652131 TTGTTGATGCCGGCCGGT 62.652 61.111 42.53 27.06 37.65 5.28
2373 5366 3.814268 CTTGTTGATGCCGGCCGG 61.814 66.667 40.26 40.26 38.57 6.13
2374 5367 0.813610 TATCTTGTTGATGCCGGCCG 60.814 55.000 26.77 21.04 36.65 6.13
2375 5368 1.334869 CTTATCTTGTTGATGCCGGCC 59.665 52.381 26.77 10.34 36.65 6.13
2376 5369 1.334869 CCTTATCTTGTTGATGCCGGC 59.665 52.381 22.73 22.73 36.65 6.13
2377 5370 2.917933 TCCTTATCTTGTTGATGCCGG 58.082 47.619 0.00 0.00 36.65 6.13
2378 5371 4.396166 AGTTTCCTTATCTTGTTGATGCCG 59.604 41.667 0.00 0.00 36.65 5.69
2379 5372 5.904362 AGTTTCCTTATCTTGTTGATGCC 57.096 39.130 0.00 0.00 36.65 4.40
2380 5373 9.294030 CAATTAGTTTCCTTATCTTGTTGATGC 57.706 33.333 0.00 0.00 36.65 3.91
2381 5374 9.294030 GCAATTAGTTTCCTTATCTTGTTGATG 57.706 33.333 0.00 0.00 36.65 3.07
2382 5375 8.470002 GGCAATTAGTTTCCTTATCTTGTTGAT 58.530 33.333 0.00 0.00 39.11 2.57
2383 5376 7.669722 AGGCAATTAGTTTCCTTATCTTGTTGA 59.330 33.333 0.00 0.00 0.00 3.18
2384 5377 7.830739 AGGCAATTAGTTTCCTTATCTTGTTG 58.169 34.615 0.00 0.00 0.00 3.33
2385 5378 9.700831 ATAGGCAATTAGTTTCCTTATCTTGTT 57.299 29.630 0.00 0.00 0.00 2.83
2386 5379 9.343539 GATAGGCAATTAGTTTCCTTATCTTGT 57.656 33.333 0.00 0.00 0.00 3.16
2387 5380 8.787852 GGATAGGCAATTAGTTTCCTTATCTTG 58.212 37.037 0.00 0.00 0.00 3.02
2388 5381 8.728098 AGGATAGGCAATTAGTTTCCTTATCTT 58.272 33.333 0.00 0.00 0.00 2.40
2389 5382 8.281529 AGGATAGGCAATTAGTTTCCTTATCT 57.718 34.615 0.00 0.00 0.00 1.98
2393 5386 9.794719 GTAATAGGATAGGCAATTAGTTTCCTT 57.205 33.333 0.00 0.00 34.17 3.36
2394 5387 8.945193 TGTAATAGGATAGGCAATTAGTTTCCT 58.055 33.333 0.00 0.00 36.21 3.36
2395 5388 9.740710 ATGTAATAGGATAGGCAATTAGTTTCC 57.259 33.333 0.00 0.00 0.00 3.13
2398 5391 9.726438 GTCATGTAATAGGATAGGCAATTAGTT 57.274 33.333 0.00 0.00 0.00 2.24
2399 5392 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
2400 5393 7.492669 CGGTCATGTAATAGGATAGGCAATTAG 59.507 40.741 0.00 0.00 0.00 1.73
2401 5394 7.327975 CGGTCATGTAATAGGATAGGCAATTA 58.672 38.462 0.00 0.00 0.00 1.40
2402 5395 6.173339 CGGTCATGTAATAGGATAGGCAATT 58.827 40.000 0.00 0.00 0.00 2.32
2403 5396 5.734720 CGGTCATGTAATAGGATAGGCAAT 58.265 41.667 0.00 0.00 0.00 3.56
2404 5397 4.562757 GCGGTCATGTAATAGGATAGGCAA 60.563 45.833 0.00 0.00 0.00 4.52
2405 5398 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
2406 5399 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
2407 5400 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
2408 5401 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
2409 5402 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
2410 5403 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
2411 5404 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
2412 5405 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
2413 5406 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
2414 5407 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
2415 5408 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
2416 5409 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
2417 5410 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
2418 5411 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
2419 5412 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
2420 5413 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
2421 5414 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
2422 5415 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
2423 5416 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
2424 5417 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
2425 5418 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
2426 5419 0.676736 TTTCAACCGGTTTGGATGGC 59.323 50.000 19.55 0.00 40.78 4.40
2427 5420 3.676291 ATTTTCAACCGGTTTGGATGG 57.324 42.857 19.55 5.30 40.78 3.51
2428 5421 5.348164 GGATATTTTCAACCGGTTTGGATG 58.652 41.667 19.55 7.05 41.73 3.51
2429 5422 4.404394 GGGATATTTTCAACCGGTTTGGAT 59.596 41.667 19.55 11.79 42.00 3.41
2430 5423 3.764972 GGGATATTTTCAACCGGTTTGGA 59.235 43.478 19.55 10.51 42.00 3.53
2431 5424 3.428316 CGGGATATTTTCAACCGGTTTGG 60.428 47.826 19.55 7.84 46.41 3.28
2432 5425 3.765026 CGGGATATTTTCAACCGGTTTG 58.235 45.455 19.55 13.53 40.79 2.93
2438 5431 5.673514 TGGTAGTACGGGATATTTTCAACC 58.326 41.667 0.00 0.00 0.00 3.77
2439 5432 7.215085 AGATGGTAGTACGGGATATTTTCAAC 58.785 38.462 0.00 0.00 0.00 3.18
2440 5433 7.369551 AGATGGTAGTACGGGATATTTTCAA 57.630 36.000 0.00 0.00 0.00 2.69
2441 5434 6.014840 GGAGATGGTAGTACGGGATATTTTCA 60.015 42.308 0.00 0.00 0.00 2.69
2442 5435 6.396450 GGAGATGGTAGTACGGGATATTTTC 58.604 44.000 0.00 0.00 0.00 2.29
2443 5436 5.247792 GGGAGATGGTAGTACGGGATATTTT 59.752 44.000 0.00 0.00 0.00 1.82
2444 5437 4.776308 GGGAGATGGTAGTACGGGATATTT 59.224 45.833 0.00 0.00 0.00 1.40
2445 5438 4.202749 TGGGAGATGGTAGTACGGGATATT 60.203 45.833 0.00 0.00 0.00 1.28
2446 5439 3.335786 TGGGAGATGGTAGTACGGGATAT 59.664 47.826 0.00 0.00 0.00 1.63
2447 5440 2.718062 TGGGAGATGGTAGTACGGGATA 59.282 50.000 0.00 0.00 0.00 2.59
2448 5441 1.502039 TGGGAGATGGTAGTACGGGAT 59.498 52.381 0.00 0.00 0.00 3.85
2449 5442 0.928505 TGGGAGATGGTAGTACGGGA 59.071 55.000 0.00 0.00 0.00 5.14
2450 5443 1.038280 GTGGGAGATGGTAGTACGGG 58.962 60.000 0.00 0.00 0.00 5.28
2451 5444 1.038280 GGTGGGAGATGGTAGTACGG 58.962 60.000 0.00 0.00 0.00 4.02
2452 5445 0.666913 CGGTGGGAGATGGTAGTACG 59.333 60.000 0.00 0.00 0.00 3.67
2453 5446 1.038280 CCGGTGGGAGATGGTAGTAC 58.962 60.000 0.00 0.00 34.06 2.73
2454 5447 0.928505 TCCGGTGGGAGATGGTAGTA 59.071 55.000 0.00 0.00 37.43 1.82
2455 5448 1.701603 TCCGGTGGGAGATGGTAGT 59.298 57.895 0.00 0.00 37.43 2.73
2456 5449 4.699192 TCCGGTGGGAGATGGTAG 57.301 61.111 0.00 0.00 37.43 3.18
2472 5465 4.694339 AGCGTTTGGTTACTGGATCTATC 58.306 43.478 0.00 0.00 0.00 2.08
2473 5466 4.443034 GGAGCGTTTGGTTACTGGATCTAT 60.443 45.833 0.00 0.00 0.00 1.98
2474 5467 3.118884 GGAGCGTTTGGTTACTGGATCTA 60.119 47.826 0.00 0.00 0.00 1.98
2475 5468 2.354805 GGAGCGTTTGGTTACTGGATCT 60.355 50.000 0.00 0.00 0.00 2.75
2476 5469 2.007608 GGAGCGTTTGGTTACTGGATC 58.992 52.381 0.00 0.00 0.00 3.36
2477 5470 1.674817 CGGAGCGTTTGGTTACTGGAT 60.675 52.381 0.00 0.00 0.00 3.41
2478 5471 0.320073 CGGAGCGTTTGGTTACTGGA 60.320 55.000 0.00 0.00 0.00 3.86
2479 5472 0.601841 ACGGAGCGTTTGGTTACTGG 60.602 55.000 0.00 0.00 36.35 4.00
2480 5473 0.511221 CACGGAGCGTTTGGTTACTG 59.489 55.000 0.00 0.00 38.32 2.74
2481 5474 0.601841 CCACGGAGCGTTTGGTTACT 60.602 55.000 0.00 0.00 38.32 2.24
2482 5475 1.864176 CCACGGAGCGTTTGGTTAC 59.136 57.895 0.00 0.00 38.32 2.50
2483 5476 1.962306 GCCACGGAGCGTTTGGTTA 60.962 57.895 0.00 0.00 38.32 2.85
2484 5477 3.284449 GCCACGGAGCGTTTGGTT 61.284 61.111 0.00 0.00 38.32 3.67
2487 5480 3.423154 GAGGCCACGGAGCGTTTG 61.423 66.667 5.01 0.00 38.32 2.93
2488 5481 4.699522 GGAGGCCACGGAGCGTTT 62.700 66.667 5.01 0.00 38.32 3.60
2503 5496 2.104859 CGCTACTCACTCCGACGGA 61.105 63.158 17.28 17.28 0.00 4.69
2504 5497 2.104859 TCGCTACTCACTCCGACGG 61.105 63.158 7.84 7.84 0.00 4.79
2505 5498 1.060622 GTCGCTACTCACTCCGACG 59.939 63.158 0.00 0.00 40.27 5.12
2506 5499 1.303799 TGGTCGCTACTCACTCCGAC 61.304 60.000 3.68 3.68 46.60 4.79
2507 5500 1.002990 TGGTCGCTACTCACTCCGA 60.003 57.895 0.00 0.00 0.00 4.55
2508 5501 1.136984 GTGGTCGCTACTCACTCCG 59.863 63.158 3.71 0.00 0.00 4.63
2509 5502 0.818296 ATGTGGTCGCTACTCACTCC 59.182 55.000 10.01 0.00 31.73 3.85
2510 5503 2.539142 CGTATGTGGTCGCTACTCACTC 60.539 54.545 10.01 3.07 31.73 3.51
2511 5504 1.400846 CGTATGTGGTCGCTACTCACT 59.599 52.381 10.01 1.88 31.73 3.41
2512 5505 1.533338 CCGTATGTGGTCGCTACTCAC 60.533 57.143 3.91 3.91 0.00 3.51
2513 5506 0.736636 CCGTATGTGGTCGCTACTCA 59.263 55.000 0.00 0.00 0.00 3.41
2514 5507 1.019673 TCCGTATGTGGTCGCTACTC 58.980 55.000 0.00 0.00 0.00 2.59
2515 5508 1.607628 GATCCGTATGTGGTCGCTACT 59.392 52.381 0.00 0.00 0.00 2.57
2516 5509 1.335810 TGATCCGTATGTGGTCGCTAC 59.664 52.381 0.00 0.00 0.00 3.58
2517 5510 1.682740 TGATCCGTATGTGGTCGCTA 58.317 50.000 0.00 0.00 0.00 4.26
2518 5511 0.821517 TTGATCCGTATGTGGTCGCT 59.178 50.000 0.00 0.00 0.00 4.93
2519 5512 1.526887 CATTGATCCGTATGTGGTCGC 59.473 52.381 0.00 0.00 0.00 5.19
2520 5513 1.526887 GCATTGATCCGTATGTGGTCG 59.473 52.381 0.00 0.00 0.00 4.79
2521 5514 2.545526 CTGCATTGATCCGTATGTGGTC 59.454 50.000 0.00 0.00 0.00 4.02
2522 5515 2.092968 ACTGCATTGATCCGTATGTGGT 60.093 45.455 0.00 0.00 0.00 4.16
2523 5516 2.288729 CACTGCATTGATCCGTATGTGG 59.711 50.000 0.00 0.00 0.00 4.17
2524 5517 2.288729 CCACTGCATTGATCCGTATGTG 59.711 50.000 5.49 0.00 0.00 3.21
2525 5518 2.564771 CCACTGCATTGATCCGTATGT 58.435 47.619 5.49 0.00 0.00 2.29
2526 5519 1.265095 GCCACTGCATTGATCCGTATG 59.735 52.381 5.49 0.00 37.47 2.39
2527 5520 1.141657 AGCCACTGCATTGATCCGTAT 59.858 47.619 5.49 0.00 41.13 3.06
2528 5521 0.541392 AGCCACTGCATTGATCCGTA 59.459 50.000 5.49 0.00 41.13 4.02
2529 5522 0.745845 GAGCCACTGCATTGATCCGT 60.746 55.000 5.49 0.00 41.13 4.69
2530 5523 1.769098 CGAGCCACTGCATTGATCCG 61.769 60.000 5.49 2.05 41.13 4.18
2531 5524 2.020131 CGAGCCACTGCATTGATCC 58.980 57.895 5.49 0.00 41.13 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.