Multiple sequence alignment - TraesCS4D01G126600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G126600 | chr4D | 100.000 | 7453 | 0 | 0 | 1 | 7453 | 111132633 | 111140085 | 0.000000e+00 | 13764.0 |
1 | TraesCS4D01G126600 | chr4D | 81.600 | 1000 | 123 | 28 | 2860 | 3835 | 324198183 | 324199145 | 0.000000e+00 | 771.0 |
2 | TraesCS4D01G126600 | chr4D | 90.741 | 108 | 8 | 2 | 3880 | 3987 | 363573823 | 363573718 | 7.800000e-30 | 143.0 |
3 | TraesCS4D01G126600 | chr4A | 93.030 | 4907 | 216 | 52 | 1708 | 6532 | 465799150 | 465794288 | 0.000000e+00 | 7070.0 |
4 | TraesCS4D01G126600 | chr4A | 92.264 | 711 | 34 | 3 | 946 | 1638 | 465799883 | 465799176 | 0.000000e+00 | 989.0 |
5 | TraesCS4D01G126600 | chr4A | 86.018 | 565 | 54 | 18 | 29 | 577 | 465801106 | 465800551 | 3.880000e-162 | 582.0 |
6 | TraesCS4D01G126600 | chr4A | 90.625 | 160 | 10 | 4 | 7062 | 7219 | 465793394 | 465793238 | 2.730000e-49 | 207.0 |
7 | TraesCS4D01G126600 | chr4A | 85.567 | 194 | 8 | 8 | 7268 | 7452 | 465790886 | 465790704 | 1.280000e-42 | 185.0 |
8 | TraesCS4D01G126600 | chr4A | 88.793 | 116 | 10 | 3 | 3880 | 3995 | 147368044 | 147367932 | 1.010000e-28 | 139.0 |
9 | TraesCS4D01G126600 | chr4A | 87.931 | 116 | 11 | 3 | 3880 | 3994 | 252667305 | 252667418 | 4.690000e-27 | 134.0 |
10 | TraesCS4D01G126600 | chr4A | 87.288 | 118 | 11 | 3 | 6538 | 6653 | 465794253 | 465794138 | 1.690000e-26 | 132.0 |
11 | TraesCS4D01G126600 | chr4A | 89.610 | 77 | 5 | 3 | 853 | 929 | 465800010 | 465799937 | 2.210000e-15 | 95.3 |
12 | TraesCS4D01G126600 | chr4B | 91.292 | 1780 | 99 | 22 | 4384 | 6133 | 172317598 | 172319351 | 0.000000e+00 | 2377.0 |
13 | TraesCS4D01G126600 | chr4B | 86.530 | 1908 | 164 | 53 | 33 | 1905 | 172313782 | 172315631 | 0.000000e+00 | 2013.0 |
14 | TraesCS4D01G126600 | chr4B | 87.122 | 893 | 44 | 18 | 2036 | 2864 | 172315760 | 172316645 | 0.000000e+00 | 946.0 |
15 | TraesCS4D01G126600 | chr4B | 81.287 | 1197 | 148 | 40 | 2856 | 3996 | 404562490 | 404563666 | 0.000000e+00 | 900.0 |
16 | TraesCS4D01G126600 | chr4B | 96.335 | 382 | 12 | 1 | 6110 | 6489 | 172319399 | 172319780 | 1.770000e-175 | 627.0 |
17 | TraesCS4D01G126600 | chr4B | 85.476 | 420 | 33 | 22 | 6805 | 7217 | 172320226 | 172320624 | 5.380000e-111 | 412.0 |
18 | TraesCS4D01G126600 | chr4B | 87.868 | 272 | 24 | 5 | 3995 | 4259 | 172316641 | 172316910 | 2.020000e-80 | 311.0 |
19 | TraesCS4D01G126600 | chr4B | 86.364 | 242 | 16 | 6 | 7221 | 7453 | 172320662 | 172320895 | 1.610000e-61 | 248.0 |
20 | TraesCS4D01G126600 | chr4B | 82.222 | 90 | 13 | 3 | 4009 | 4096 | 40030055 | 40029967 | 2.880000e-09 | 75.0 |
21 | TraesCS4D01G126600 | chr3D | 85.266 | 1052 | 96 | 33 | 2855 | 3874 | 58598109 | 58599133 | 0.000000e+00 | 1029.0 |
22 | TraesCS4D01G126600 | chr3D | 81.951 | 820 | 102 | 27 | 2883 | 3674 | 546392765 | 546393566 | 0.000000e+00 | 652.0 |
23 | TraesCS4D01G126600 | chr3D | 87.903 | 124 | 14 | 1 | 3873 | 3996 | 58599167 | 58599289 | 2.170000e-30 | 145.0 |
24 | TraesCS4D01G126600 | chr3D | 97.436 | 39 | 1 | 0 | 626 | 664 | 586960153 | 586960115 | 4.830000e-07 | 67.6 |
25 | TraesCS4D01G126600 | chr3B | 81.521 | 1039 | 148 | 25 | 2860 | 3874 | 188228503 | 188229521 | 0.000000e+00 | 815.0 |
26 | TraesCS4D01G126600 | chr3B | 76.386 | 1046 | 188 | 40 | 2860 | 3871 | 404842701 | 404843721 | 6.670000e-140 | 508.0 |
27 | TraesCS4D01G126600 | chr3B | 79.550 | 489 | 67 | 16 | 2859 | 3333 | 801292429 | 801291960 | 1.210000e-82 | 318.0 |
28 | TraesCS4D01G126600 | chr3B | 81.046 | 153 | 18 | 6 | 1840 | 1991 | 806275502 | 806275360 | 2.200000e-20 | 111.0 |
29 | TraesCS4D01G126600 | chr3B | 90.566 | 53 | 5 | 0 | 4043 | 4095 | 708250412 | 708250360 | 3.730000e-08 | 71.3 |
30 | TraesCS4D01G126600 | chr3B | 83.784 | 74 | 10 | 2 | 379 | 451 | 19384535 | 19384607 | 1.340000e-07 | 69.4 |
31 | TraesCS4D01G126600 | chr2B | 81.631 | 969 | 111 | 23 | 2863 | 3802 | 737008988 | 737008058 | 0.000000e+00 | 741.0 |
32 | TraesCS4D01G126600 | chr2B | 95.000 | 40 | 2 | 0 | 2135 | 2174 | 741219606 | 741219567 | 6.240000e-06 | 63.9 |
33 | TraesCS4D01G126600 | chr2B | 95.000 | 40 | 2 | 0 | 2135 | 2174 | 741249179 | 741249140 | 6.240000e-06 | 63.9 |
34 | TraesCS4D01G126600 | chr1B | 79.866 | 1048 | 132 | 49 | 2862 | 3874 | 476345633 | 476344630 | 0.000000e+00 | 693.0 |
35 | TraesCS4D01G126600 | chr1B | 81.373 | 510 | 86 | 6 | 3369 | 3874 | 340414344 | 340414848 | 2.500000e-109 | 407.0 |
36 | TraesCS4D01G126600 | chr1B | 78.378 | 222 | 33 | 9 | 1804 | 2025 | 449855637 | 449855431 | 6.070000e-26 | 130.0 |
37 | TraesCS4D01G126600 | chr1B | 100.000 | 30 | 0 | 0 | 2770 | 2799 | 469148665 | 469148694 | 1.000000e-03 | 56.5 |
38 | TraesCS4D01G126600 | chr6B | 79.610 | 1025 | 142 | 34 | 2884 | 3867 | 531734098 | 531733100 | 0.000000e+00 | 673.0 |
39 | TraesCS4D01G126600 | chr6B | 76.990 | 917 | 143 | 33 | 2975 | 3865 | 56002772 | 56003646 | 5.270000e-126 | 462.0 |
40 | TraesCS4D01G126600 | chr1D | 83.221 | 739 | 80 | 28 | 2882 | 3587 | 354722153 | 354721426 | 8.160000e-179 | 638.0 |
41 | TraesCS4D01G126600 | chr1D | 80.174 | 691 | 103 | 23 | 2859 | 3532 | 16283971 | 16284644 | 3.130000e-133 | 486.0 |
42 | TraesCS4D01G126600 | chr1D | 96.970 | 33 | 0 | 1 | 634 | 665 | 68242004 | 68242036 | 4.000000e-03 | 54.7 |
43 | TraesCS4D01G126600 | chr3A | 81.380 | 768 | 114 | 19 | 3015 | 3770 | 144532057 | 144532807 | 3.850000e-167 | 599.0 |
44 | TraesCS4D01G126600 | chr3A | 80.729 | 192 | 25 | 6 | 1801 | 1990 | 729322155 | 729322336 | 1.010000e-28 | 139.0 |
45 | TraesCS4D01G126600 | chr3A | 88.525 | 61 | 6 | 1 | 4037 | 4096 | 671651220 | 671651160 | 1.040000e-08 | 73.1 |
46 | TraesCS4D01G126600 | chr6D | 82.380 | 664 | 96 | 11 | 3221 | 3871 | 134333610 | 134334265 | 6.530000e-155 | 558.0 |
47 | TraesCS4D01G126600 | chr6D | 82.282 | 666 | 93 | 13 | 3221 | 3871 | 134738564 | 134739219 | 3.040000e-153 | 553.0 |
48 | TraesCS4D01G126600 | chr2D | 82.206 | 281 | 34 | 11 | 2860 | 3125 | 512906224 | 512906503 | 2.090000e-55 | 228.0 |
49 | TraesCS4D01G126600 | chr2D | 81.944 | 72 | 9 | 3 | 1807 | 1875 | 641545479 | 641545409 | 2.900000e-04 | 58.4 |
50 | TraesCS4D01G126600 | chr2A | 89.103 | 156 | 16 | 1 | 2861 | 3015 | 685647594 | 685647749 | 7.630000e-45 | 193.0 |
51 | TraesCS4D01G126600 | chr2A | 95.122 | 41 | 2 | 0 | 2135 | 2175 | 739491848 | 739491808 | 1.740000e-06 | 65.8 |
52 | TraesCS4D01G126600 | chr7A | 80.995 | 221 | 32 | 8 | 2496 | 2712 | 729444605 | 729444391 | 4.630000e-37 | 167.0 |
53 | TraesCS4D01G126600 | chr7A | 80.543 | 221 | 33 | 7 | 2496 | 2712 | 729491493 | 729491279 | 2.150000e-35 | 161.0 |
54 | TraesCS4D01G126600 | chr7D | 82.199 | 191 | 21 | 8 | 2865 | 3042 | 477655510 | 477655320 | 1.300000e-32 | 152.0 |
55 | TraesCS4D01G126600 | chr7D | 81.818 | 77 | 14 | 0 | 4018 | 4094 | 332725721 | 332725797 | 1.740000e-06 | 65.8 |
56 | TraesCS4D01G126600 | chr7D | 100.000 | 28 | 0 | 0 | 634 | 661 | 133944754 | 133944727 | 1.400000e-02 | 52.8 |
57 | TraesCS4D01G126600 | chr6A | 89.655 | 116 | 10 | 2 | 3881 | 3996 | 65659146 | 65659259 | 6.030000e-31 | 147.0 |
58 | TraesCS4D01G126600 | chr6A | 75.000 | 212 | 33 | 11 | 1801 | 2003 | 545316669 | 545316869 | 6.200000e-11 | 80.5 |
59 | TraesCS4D01G126600 | chr5A | 87.500 | 120 | 14 | 1 | 3880 | 3999 | 429732537 | 429732419 | 3.630000e-28 | 137.0 |
60 | TraesCS4D01G126600 | chr5A | 87.826 | 115 | 13 | 1 | 3881 | 3995 | 180365538 | 180365651 | 4.690000e-27 | 134.0 |
61 | TraesCS4D01G126600 | chr5A | 75.549 | 319 | 53 | 19 | 2433 | 2743 | 523427247 | 523426946 | 4.690000e-27 | 134.0 |
62 | TraesCS4D01G126600 | chr5A | 100.000 | 30 | 0 | 0 | 632 | 661 | 412029245 | 412029216 | 1.000000e-03 | 56.5 |
63 | TraesCS4D01G126600 | chr5D | 79.882 | 169 | 28 | 6 | 2579 | 2743 | 411512831 | 411512665 | 1.310000e-22 | 119.0 |
64 | TraesCS4D01G126600 | chr5D | 97.059 | 34 | 1 | 0 | 635 | 668 | 530069318 | 530069285 | 2.900000e-04 | 58.4 |
65 | TraesCS4D01G126600 | chr5D | 100.000 | 28 | 0 | 0 | 634 | 661 | 317386498 | 317386471 | 1.400000e-02 | 52.8 |
66 | TraesCS4D01G126600 | chr1A | 100.000 | 29 | 0 | 0 | 637 | 665 | 489238994 | 489239022 | 4.000000e-03 | 54.7 |
67 | TraesCS4D01G126600 | chr5B | 100.000 | 28 | 0 | 0 | 641 | 668 | 669302396 | 669302369 | 1.400000e-02 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G126600 | chr4D | 111132633 | 111140085 | 7452 | False | 13764.000000 | 13764 | 100.000000 | 1 | 7453 | 1 | chr4D.!!$F1 | 7452 |
1 | TraesCS4D01G126600 | chr4D | 324198183 | 324199145 | 962 | False | 771.000000 | 771 | 81.600000 | 2860 | 3835 | 1 | chr4D.!!$F2 | 975 |
2 | TraesCS4D01G126600 | chr4A | 465790704 | 465801106 | 10402 | True | 1322.900000 | 7070 | 89.200286 | 29 | 7452 | 7 | chr4A.!!$R2 | 7423 |
3 | TraesCS4D01G126600 | chr4B | 172313782 | 172320895 | 7113 | False | 990.571429 | 2377 | 88.712429 | 33 | 7453 | 7 | chr4B.!!$F2 | 7420 |
4 | TraesCS4D01G126600 | chr4B | 404562490 | 404563666 | 1176 | False | 900.000000 | 900 | 81.287000 | 2856 | 3996 | 1 | chr4B.!!$F1 | 1140 |
5 | TraesCS4D01G126600 | chr3D | 546392765 | 546393566 | 801 | False | 652.000000 | 652 | 81.951000 | 2883 | 3674 | 1 | chr3D.!!$F1 | 791 |
6 | TraesCS4D01G126600 | chr3D | 58598109 | 58599289 | 1180 | False | 587.000000 | 1029 | 86.584500 | 2855 | 3996 | 2 | chr3D.!!$F2 | 1141 |
7 | TraesCS4D01G126600 | chr3B | 188228503 | 188229521 | 1018 | False | 815.000000 | 815 | 81.521000 | 2860 | 3874 | 1 | chr3B.!!$F2 | 1014 |
8 | TraesCS4D01G126600 | chr3B | 404842701 | 404843721 | 1020 | False | 508.000000 | 508 | 76.386000 | 2860 | 3871 | 1 | chr3B.!!$F3 | 1011 |
9 | TraesCS4D01G126600 | chr2B | 737008058 | 737008988 | 930 | True | 741.000000 | 741 | 81.631000 | 2863 | 3802 | 1 | chr2B.!!$R1 | 939 |
10 | TraesCS4D01G126600 | chr1B | 476344630 | 476345633 | 1003 | True | 693.000000 | 693 | 79.866000 | 2862 | 3874 | 1 | chr1B.!!$R2 | 1012 |
11 | TraesCS4D01G126600 | chr1B | 340414344 | 340414848 | 504 | False | 407.000000 | 407 | 81.373000 | 3369 | 3874 | 1 | chr1B.!!$F1 | 505 |
12 | TraesCS4D01G126600 | chr6B | 531733100 | 531734098 | 998 | True | 673.000000 | 673 | 79.610000 | 2884 | 3867 | 1 | chr6B.!!$R1 | 983 |
13 | TraesCS4D01G126600 | chr6B | 56002772 | 56003646 | 874 | False | 462.000000 | 462 | 76.990000 | 2975 | 3865 | 1 | chr6B.!!$F1 | 890 |
14 | TraesCS4D01G126600 | chr1D | 354721426 | 354722153 | 727 | True | 638.000000 | 638 | 83.221000 | 2882 | 3587 | 1 | chr1D.!!$R1 | 705 |
15 | TraesCS4D01G126600 | chr1D | 16283971 | 16284644 | 673 | False | 486.000000 | 486 | 80.174000 | 2859 | 3532 | 1 | chr1D.!!$F1 | 673 |
16 | TraesCS4D01G126600 | chr3A | 144532057 | 144532807 | 750 | False | 599.000000 | 599 | 81.380000 | 3015 | 3770 | 1 | chr3A.!!$F1 | 755 |
17 | TraesCS4D01G126600 | chr6D | 134333610 | 134334265 | 655 | False | 558.000000 | 558 | 82.380000 | 3221 | 3871 | 1 | chr6D.!!$F1 | 650 |
18 | TraesCS4D01G126600 | chr6D | 134738564 | 134739219 | 655 | False | 553.000000 | 553 | 82.282000 | 3221 | 3871 | 1 | chr6D.!!$F2 | 650 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
535 | 552 | 0.454600 | CACTGGAGTTCATGCATGCC | 59.545 | 55.000 | 22.25 | 16.87 | 0.00 | 4.40 | F |
1712 | 2087 | 0.321919 | TTCAGCTGTGACTCCATGCC | 60.322 | 55.000 | 14.67 | 0.00 | 30.10 | 4.40 | F |
1715 | 2090 | 0.330604 | AGCTGTGACTCCATGCCATT | 59.669 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 | F |
1853 | 2248 | 0.691078 | AGTCGGATGTGGCACCCTAT | 60.691 | 55.000 | 16.26 | 1.27 | 0.00 | 2.57 | F |
2371 | 2860 | 1.068352 | ATCCTCCCATACCCCTTGGC | 61.068 | 60.000 | 0.00 | 0.00 | 32.60 | 4.52 | F |
3806 | 4474 | 1.592939 | GCGAGAAATCGAGAGGGGC | 60.593 | 63.158 | 1.17 | 0.00 | 34.64 | 5.80 | F |
3874 | 4550 | 0.179140 | CGCCGCTAACCCGTAGTTAA | 60.179 | 55.000 | 0.00 | 0.00 | 40.43 | 2.01 | F |
5235 | 6524 | 1.028905 | TGCCCAAAAACCGTCTTCAG | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1835 | 2227 | 0.180406 | AATAGGGTGCCACATCCGAC | 59.820 | 55.000 | 0.00 | 0.0 | 40.09 | 4.79 | R |
3409 | 3996 | 0.179018 | CATCGGGTTGGAGGATTCCC | 60.179 | 60.000 | 0.00 | 0.0 | 43.33 | 3.97 | R |
3496 | 4112 | 1.000896 | ATGCCGGTGAAAAGGGAGG | 60.001 | 57.895 | 1.90 | 0.0 | 0.00 | 4.30 | R |
3845 | 4521 | 0.588252 | GTTAGCGGCGAGTATACGGA | 59.412 | 55.000 | 12.98 | 0.0 | 0.00 | 4.69 | R |
3874 | 4550 | 2.034532 | CCCGGCCCGTAAACCTTT | 59.965 | 61.111 | 0.85 | 0.0 | 0.00 | 3.11 | R |
5193 | 6482 | 0.040958 | CGAAGGCTTGCACAGAACAC | 60.041 | 55.000 | 3.46 | 0.0 | 0.00 | 3.32 | R |
5447 | 6739 | 4.213513 | AGGTGTACACAGTATACTAGGCC | 58.786 | 47.826 | 26.51 | 0.0 | 0.00 | 5.19 | R |
7026 | 8778 | 0.173935 | CCCGCGACAGTGTATTGGTA | 59.826 | 55.000 | 8.23 | 0.0 | 0.00 | 3.25 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
54 | 55 | 4.335416 | CCTGTGTGATTGGGTGACTATTT | 58.665 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
60 | 61 | 3.763360 | TGATTGGGTGACTATTTTGCCTG | 59.237 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
70 | 71 | 7.367285 | GTGACTATTTTGCCTGATTGTGTTAA | 58.633 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
100 | 101 | 1.680249 | GCCTCCTTCGATTCTGCCTTT | 60.680 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
115 | 116 | 2.158682 | TGCCTTTAGTGAGTGGCTCAAA | 60.159 | 45.455 | 0.00 | 0.00 | 42.46 | 2.69 |
133 | 134 | 5.636543 | GCTCAAACATGAAGGAAGGAAATTG | 59.363 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
134 | 135 | 6.517194 | GCTCAAACATGAAGGAAGGAAATTGA | 60.517 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
139 | 140 | 4.927267 | TGAAGGAAGGAAATTGAGCCTA | 57.073 | 40.909 | 0.00 | 0.00 | 33.20 | 3.93 |
164 | 165 | 2.900546 | GCTACTGGCTACCACTATGGAT | 59.099 | 50.000 | 0.84 | 0.00 | 38.33 | 3.41 |
193 | 194 | 1.705186 | AGAAACAAGGGAGCAGCCTAA | 59.295 | 47.619 | 0.00 | 0.00 | 36.66 | 2.69 |
226 | 228 | 7.309990 | CCAATTAAGGCTCCTTTGATTCAAGAA | 60.310 | 37.037 | 6.47 | 0.00 | 37.47 | 2.52 |
272 | 284 | 2.462723 | TGGATCCTTATGTGTCGGTCA | 58.537 | 47.619 | 14.23 | 0.00 | 0.00 | 4.02 |
282 | 294 | 3.281341 | TGTGTCGGTCATTTGATTTGC | 57.719 | 42.857 | 0.00 | 0.00 | 0.00 | 3.68 |
283 | 295 | 2.620585 | TGTGTCGGTCATTTGATTTGCA | 59.379 | 40.909 | 0.00 | 0.00 | 0.00 | 4.08 |
285 | 297 | 3.609373 | GTGTCGGTCATTTGATTTGCATG | 59.391 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
286 | 298 | 3.505293 | TGTCGGTCATTTGATTTGCATGA | 59.495 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
291 | 307 | 7.275341 | GTCGGTCATTTGATTTGCATGATTTAA | 59.725 | 33.333 | 0.00 | 0.00 | 29.78 | 1.52 |
300 | 316 | 7.849160 | TGATTTGCATGATTTAAATCCTTGGA | 58.151 | 30.769 | 22.42 | 17.98 | 39.09 | 3.53 |
301 | 317 | 7.765360 | TGATTTGCATGATTTAAATCCTTGGAC | 59.235 | 33.333 | 22.42 | 11.54 | 39.09 | 4.02 |
302 | 318 | 5.247507 | TGCATGATTTAAATCCTTGGACG | 57.752 | 39.130 | 22.42 | 4.96 | 34.50 | 4.79 |
311 | 327 | 6.718522 | TTAAATCCTTGGACGTTTTTCCTT | 57.281 | 33.333 | 0.00 | 0.00 | 36.51 | 3.36 |
312 | 328 | 4.584327 | AATCCTTGGACGTTTTTCCTTG | 57.416 | 40.909 | 0.00 | 0.00 | 36.51 | 3.61 |
319 | 335 | 6.016610 | CCTTGGACGTTTTTCCTTGAAGATTA | 60.017 | 38.462 | 0.00 | 0.00 | 36.51 | 1.75 |
320 | 336 | 6.945938 | TGGACGTTTTTCCTTGAAGATTAA | 57.054 | 33.333 | 0.00 | 0.00 | 36.51 | 1.40 |
330 | 346 | 6.515272 | TCCTTGAAGATTAATTTGCACTCC | 57.485 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
353 | 369 | 8.915057 | TCCATTTGAAATAAAATTTCCAAGCA | 57.085 | 26.923 | 9.29 | 0.00 | 0.00 | 3.91 |
354 | 370 | 9.347240 | TCCATTTGAAATAAAATTTCCAAGCAA | 57.653 | 25.926 | 9.29 | 0.00 | 0.00 | 3.91 |
361 | 377 | 9.611284 | GAAATAAAATTTCCAAGCAATCAAACC | 57.389 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
364 | 380 | 5.813513 | AATTTCCAAGCAATCAAACCTCT | 57.186 | 34.783 | 0.00 | 0.00 | 0.00 | 3.69 |
366 | 382 | 5.612725 | TTTCCAAGCAATCAAACCTCTTT | 57.387 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
453 | 469 | 7.042523 | CCAACATTTTGAGAATCCTTTGAACAC | 60.043 | 37.037 | 0.00 | 0.00 | 34.24 | 3.32 |
457 | 473 | 1.128692 | GAGAATCCTTTGAACACGCCG | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 6.46 |
485 | 502 | 6.560003 | TTTAGCTAGATCAATGTTCCTGGA | 57.440 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
535 | 552 | 0.454600 | CACTGGAGTTCATGCATGCC | 59.545 | 55.000 | 22.25 | 16.87 | 0.00 | 4.40 |
536 | 553 | 1.028330 | ACTGGAGTTCATGCATGCCG | 61.028 | 55.000 | 22.25 | 14.32 | 0.00 | 5.69 |
537 | 554 | 1.002257 | TGGAGTTCATGCATGCCGT | 60.002 | 52.632 | 22.25 | 7.98 | 0.00 | 5.68 |
543 | 560 | 0.606130 | TTCATGCATGCCGTGACACT | 60.606 | 50.000 | 22.25 | 0.00 | 39.14 | 3.55 |
562 | 579 | 1.300931 | GAGCTCGACCACTGCACAA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
578 | 825 | 3.631145 | CACAAGGTGCATATGTATGGC | 57.369 | 47.619 | 4.29 | 0.00 | 34.32 | 4.40 |
605 | 852 | 9.590451 | GAATTCATTCATTGGTCAACACATAAT | 57.410 | 29.630 | 0.00 | 0.00 | 36.80 | 1.28 |
669 | 919 | 4.344390 | GGATCGGAGGGAGTAACATAACTT | 59.656 | 45.833 | 0.00 | 0.00 | 0.00 | 2.66 |
671 | 921 | 6.294620 | GGATCGGAGGGAGTAACATAACTTAG | 60.295 | 46.154 | 0.00 | 0.00 | 0.00 | 2.18 |
672 | 922 | 4.891756 | TCGGAGGGAGTAACATAACTTAGG | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
732 | 982 | 8.657387 | TGATGGGTTATATGAAGTTTTTCCAA | 57.343 | 30.769 | 0.00 | 0.00 | 32.09 | 3.53 |
737 | 988 | 8.527810 | GGGTTATATGAAGTTTTTCCAACATGA | 58.472 | 33.333 | 0.00 | 0.00 | 32.09 | 3.07 |
738 | 989 | 9.353999 | GGTTATATGAAGTTTTTCCAACATGAC | 57.646 | 33.333 | 0.00 | 0.00 | 32.09 | 3.06 |
801 | 1053 | 5.583854 | AGATAGCAAGCATGTAACTGTTCTG | 59.416 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
825 | 1078 | 7.491682 | TGCTATAAGATTTTGGGAGCATTTTC | 58.508 | 34.615 | 0.00 | 0.00 | 33.73 | 2.29 |
826 | 1079 | 7.342799 | TGCTATAAGATTTTGGGAGCATTTTCT | 59.657 | 33.333 | 0.00 | 0.00 | 33.73 | 2.52 |
827 | 1080 | 7.864882 | GCTATAAGATTTTGGGAGCATTTTCTC | 59.135 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
838 | 1091 | 5.451798 | GGGAGCATTTTCTCTCTCTCTACAG | 60.452 | 48.000 | 0.00 | 0.00 | 33.70 | 2.74 |
929 | 1257 | 2.111878 | GCCCATGAGACCATCCCG | 59.888 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
1075 | 1403 | 2.269241 | GCTTTCTCCACCCTCCCG | 59.731 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
1087 | 1415 | 1.627297 | CCCTCCCGGAAAGCTTAGCT | 61.627 | 60.000 | 0.73 | 0.00 | 42.56 | 3.32 |
1269 | 1597 | 6.704310 | TCGTAATAAGGACAATAATAGGGCC | 58.296 | 40.000 | 0.00 | 0.00 | 0.00 | 5.80 |
1278 | 1606 | 0.542232 | ATAATAGGGCCGACGGAGCT | 60.542 | 55.000 | 20.50 | 0.00 | 0.00 | 4.09 |
1374 | 1720 | 0.545548 | AGGAGGAGGAGGACAACCAC | 60.546 | 60.000 | 0.00 | 0.00 | 38.94 | 4.16 |
1556 | 1902 | 0.682209 | AATTACTGCAGCCAGCCAGG | 60.682 | 55.000 | 15.27 | 0.00 | 43.02 | 4.45 |
1568 | 1914 | 1.386533 | CAGCCAGGAATTAGTGCAGG | 58.613 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1612 | 1958 | 3.436704 | TGTGATCCTGCAGTTCGAATTTC | 59.563 | 43.478 | 13.81 | 0.00 | 0.00 | 2.17 |
1620 | 1966 | 1.732259 | CAGTTCGAATTTCGGTCCAGG | 59.268 | 52.381 | 18.02 | 1.27 | 40.88 | 4.45 |
1627 | 1973 | 1.295020 | ATTTCGGTCCAGGATTGGGA | 58.705 | 50.000 | 0.00 | 0.00 | 45.10 | 4.37 |
1638 | 1990 | 2.305927 | CAGGATTGGGACTTGTAGTGGT | 59.694 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1640 | 1992 | 2.304761 | GGATTGGGACTTGTAGTGGTCA | 59.695 | 50.000 | 0.00 | 0.00 | 34.49 | 4.02 |
1642 | 1994 | 2.097110 | TGGGACTTGTAGTGGTCACT | 57.903 | 50.000 | 8.74 | 8.74 | 45.02 | 3.41 |
1643 | 1995 | 1.691976 | TGGGACTTGTAGTGGTCACTG | 59.308 | 52.381 | 13.32 | 0.00 | 42.52 | 3.66 |
1644 | 1996 | 1.608283 | GGGACTTGTAGTGGTCACTGC | 60.608 | 57.143 | 13.32 | 12.31 | 42.52 | 4.40 |
1645 | 1997 | 1.608283 | GGACTTGTAGTGGTCACTGCC | 60.608 | 57.143 | 13.32 | 5.07 | 42.33 | 4.85 |
1646 | 1998 | 0.396811 | ACTTGTAGTGGTCACTGCCC | 59.603 | 55.000 | 13.32 | 2.87 | 42.33 | 5.36 |
1648 | 2000 | 1.003580 | CTTGTAGTGGTCACTGCCCAT | 59.996 | 52.381 | 13.32 | 0.00 | 42.33 | 4.00 |
1649 | 2001 | 1.064003 | TGTAGTGGTCACTGCCCATT | 58.936 | 50.000 | 13.32 | 0.00 | 42.33 | 3.16 |
1650 | 2002 | 1.271325 | TGTAGTGGTCACTGCCCATTG | 60.271 | 52.381 | 13.32 | 0.00 | 42.33 | 2.82 |
1651 | 2003 | 0.327924 | TAGTGGTCACTGCCCATTGG | 59.672 | 55.000 | 13.32 | 0.00 | 42.52 | 3.16 |
1652 | 2004 | 1.074775 | GTGGTCACTGCCCATTGGA | 59.925 | 57.895 | 3.62 | 0.00 | 33.76 | 3.53 |
1653 | 2005 | 1.074775 | TGGTCACTGCCCATTGGAC | 59.925 | 57.895 | 3.62 | 0.00 | 0.00 | 4.02 |
1654 | 2006 | 2.040544 | GGTCACTGCCCATTGGACG | 61.041 | 63.158 | 3.62 | 0.00 | 0.00 | 4.79 |
1655 | 2007 | 2.359850 | TCACTGCCCATTGGACGC | 60.360 | 61.111 | 3.62 | 0.11 | 0.00 | 5.19 |
1656 | 2008 | 2.672651 | CACTGCCCATTGGACGCA | 60.673 | 61.111 | 3.62 | 5.35 | 0.00 | 5.24 |
1657 | 2009 | 2.048023 | CACTGCCCATTGGACGCAT | 61.048 | 57.895 | 3.62 | 0.00 | 0.00 | 4.73 |
1658 | 2010 | 2.048023 | ACTGCCCATTGGACGCATG | 61.048 | 57.895 | 3.62 | 3.60 | 0.00 | 4.06 |
1659 | 2011 | 2.035469 | TGCCCATTGGACGCATGT | 59.965 | 55.556 | 3.62 | 0.00 | 0.00 | 3.21 |
1660 | 2012 | 1.597797 | CTGCCCATTGGACGCATGTT | 61.598 | 55.000 | 3.62 | 0.00 | 0.00 | 2.71 |
1661 | 2013 | 0.322906 | TGCCCATTGGACGCATGTTA | 60.323 | 50.000 | 3.62 | 0.00 | 0.00 | 2.41 |
1662 | 2014 | 0.814457 | GCCCATTGGACGCATGTTAA | 59.186 | 50.000 | 3.62 | 0.00 | 0.00 | 2.01 |
1663 | 2015 | 1.202290 | GCCCATTGGACGCATGTTAAG | 60.202 | 52.381 | 3.62 | 0.00 | 0.00 | 1.85 |
1664 | 2016 | 2.091541 | CCCATTGGACGCATGTTAAGT | 58.908 | 47.619 | 3.62 | 0.00 | 0.00 | 2.24 |
1665 | 2017 | 3.275143 | CCCATTGGACGCATGTTAAGTA | 58.725 | 45.455 | 3.62 | 0.00 | 0.00 | 2.24 |
1666 | 2018 | 3.312421 | CCCATTGGACGCATGTTAAGTAG | 59.688 | 47.826 | 3.62 | 0.00 | 0.00 | 2.57 |
1667 | 2019 | 3.312421 | CCATTGGACGCATGTTAAGTAGG | 59.688 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1668 | 2020 | 3.965379 | TTGGACGCATGTTAAGTAGGA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 2.94 |
1669 | 2021 | 3.520290 | TGGACGCATGTTAAGTAGGAG | 57.480 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
1670 | 2022 | 2.829720 | TGGACGCATGTTAAGTAGGAGT | 59.170 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
1671 | 2023 | 4.018490 | TGGACGCATGTTAAGTAGGAGTA | 58.982 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
1672 | 2024 | 4.647853 | TGGACGCATGTTAAGTAGGAGTAT | 59.352 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
1673 | 2025 | 5.128171 | TGGACGCATGTTAAGTAGGAGTATT | 59.872 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
1674 | 2026 | 6.047231 | GGACGCATGTTAAGTAGGAGTATTT | 58.953 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1697 | 2072 | 9.850628 | ATTTGAGTGTTTCATTATCATGTTCAG | 57.149 | 29.630 | 0.00 | 0.00 | 35.27 | 3.02 |
1698 | 2073 | 6.845302 | TGAGTGTTTCATTATCATGTTCAGC | 58.155 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1700 | 2075 | 6.849502 | AGTGTTTCATTATCATGTTCAGCTG | 58.150 | 36.000 | 7.63 | 7.63 | 0.00 | 4.24 |
1703 | 2078 | 6.430616 | TGTTTCATTATCATGTTCAGCTGTGA | 59.569 | 34.615 | 14.67 | 10.47 | 0.00 | 3.58 |
1704 | 2079 | 6.426980 | TTCATTATCATGTTCAGCTGTGAC | 57.573 | 37.500 | 14.67 | 14.04 | 30.10 | 3.67 |
1705 | 2080 | 5.737860 | TCATTATCATGTTCAGCTGTGACT | 58.262 | 37.500 | 14.67 | 3.48 | 30.10 | 3.41 |
1706 | 2081 | 5.814188 | TCATTATCATGTTCAGCTGTGACTC | 59.186 | 40.000 | 14.67 | 1.90 | 30.10 | 3.36 |
1707 | 2082 | 2.462456 | TCATGTTCAGCTGTGACTCC | 57.538 | 50.000 | 14.67 | 0.00 | 30.10 | 3.85 |
1708 | 2083 | 1.693606 | TCATGTTCAGCTGTGACTCCA | 59.306 | 47.619 | 14.67 | 3.16 | 30.10 | 3.86 |
1709 | 2084 | 2.303890 | TCATGTTCAGCTGTGACTCCAT | 59.696 | 45.455 | 14.67 | 5.33 | 30.10 | 3.41 |
1710 | 2085 | 2.174363 | TGTTCAGCTGTGACTCCATG | 57.826 | 50.000 | 14.67 | 0.00 | 30.10 | 3.66 |
1711 | 2086 | 0.801251 | GTTCAGCTGTGACTCCATGC | 59.199 | 55.000 | 14.67 | 0.00 | 30.10 | 4.06 |
1712 | 2087 | 0.321919 | TTCAGCTGTGACTCCATGCC | 60.322 | 55.000 | 14.67 | 0.00 | 30.10 | 4.40 |
1713 | 2088 | 1.002990 | CAGCTGTGACTCCATGCCA | 60.003 | 57.895 | 5.25 | 0.00 | 0.00 | 4.92 |
1714 | 2089 | 0.393944 | CAGCTGTGACTCCATGCCAT | 60.394 | 55.000 | 5.25 | 0.00 | 0.00 | 4.40 |
1715 | 2090 | 0.330604 | AGCTGTGACTCCATGCCATT | 59.669 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1716 | 2091 | 1.180029 | GCTGTGACTCCATGCCATTT | 58.820 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1717 | 2092 | 1.547372 | GCTGTGACTCCATGCCATTTT | 59.453 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
1718 | 2093 | 2.416431 | GCTGTGACTCCATGCCATTTTC | 60.416 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1719 | 2094 | 3.087031 | CTGTGACTCCATGCCATTTTCT | 58.913 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
1720 | 2095 | 2.821378 | TGTGACTCCATGCCATTTTCTG | 59.179 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
1721 | 2096 | 1.820519 | TGACTCCATGCCATTTTCTGC | 59.179 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1722 | 2097 | 2.097825 | GACTCCATGCCATTTTCTGCT | 58.902 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
1723 | 2098 | 2.494870 | GACTCCATGCCATTTTCTGCTT | 59.505 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
1724 | 2099 | 3.696051 | GACTCCATGCCATTTTCTGCTTA | 59.304 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
1725 | 2100 | 4.088634 | ACTCCATGCCATTTTCTGCTTAA | 58.911 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
1726 | 2101 | 4.527816 | ACTCCATGCCATTTTCTGCTTAAA | 59.472 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
1727 | 2102 | 5.011943 | ACTCCATGCCATTTTCTGCTTAAAA | 59.988 | 36.000 | 0.00 | 0.31 | 33.15 | 1.52 |
1728 | 2103 | 5.481105 | TCCATGCCATTTTCTGCTTAAAAG | 58.519 | 37.500 | 0.00 | 0.00 | 32.20 | 2.27 |
1732 | 2107 | 7.255208 | CCATGCCATTTTCTGCTTAAAAGTTTT | 60.255 | 33.333 | 6.06 | 6.06 | 32.20 | 2.43 |
1757 | 2132 | 2.767960 | CCCTTGCTATTTCTTTGGGCAT | 59.232 | 45.455 | 0.00 | 0.00 | 32.87 | 4.40 |
1772 | 2147 | 2.284190 | GGGCATTAGAAGCTCACAGTC | 58.716 | 52.381 | 0.00 | 0.00 | 31.20 | 3.51 |
1792 | 2167 | 4.532521 | AGTCTGACTTGTATTGTTAGGGCT | 59.467 | 41.667 | 4.06 | 0.00 | 0.00 | 5.19 |
1796 | 2171 | 3.939592 | GACTTGTATTGTTAGGGCTGTCC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1835 | 2227 | 8.498054 | TCTTAATCATGAGACCTAAGCAAAAG | 57.502 | 34.615 | 0.09 | 0.00 | 0.00 | 2.27 |
1838 | 2230 | 4.245660 | TCATGAGACCTAAGCAAAAGTCG | 58.754 | 43.478 | 0.00 | 0.00 | 34.41 | 4.18 |
1850 | 2242 | 0.893727 | AAAAGTCGGATGTGGCACCC | 60.894 | 55.000 | 16.26 | 9.07 | 0.00 | 4.61 |
1853 | 2248 | 0.691078 | AGTCGGATGTGGCACCCTAT | 60.691 | 55.000 | 16.26 | 1.27 | 0.00 | 2.57 |
1861 | 2256 | 2.980568 | TGTGGCACCCTATTTAACGAG | 58.019 | 47.619 | 16.26 | 0.00 | 0.00 | 4.18 |
1880 | 2275 | 4.158764 | ACGAGGAAAGAGAGAGTTACCATG | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
1888 | 2283 | 9.308318 | GAAAGAGAGAGTTACCATGTCTTAATC | 57.692 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1917 | 2312 | 3.295973 | AGCTCTTAGCACCAAAACCAAA | 58.704 | 40.909 | 1.22 | 0.00 | 45.56 | 3.28 |
1918 | 2313 | 3.704061 | AGCTCTTAGCACCAAAACCAAAA | 59.296 | 39.130 | 1.22 | 0.00 | 45.56 | 2.44 |
1919 | 2314 | 3.802139 | GCTCTTAGCACCAAAACCAAAAC | 59.198 | 43.478 | 0.00 | 0.00 | 41.89 | 2.43 |
1920 | 2315 | 4.368315 | CTCTTAGCACCAAAACCAAAACC | 58.632 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
1921 | 2316 | 3.769844 | TCTTAGCACCAAAACCAAAACCA | 59.230 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
1922 | 2317 | 2.689553 | AGCACCAAAACCAAAACCAG | 57.310 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1927 | 2322 | 2.499693 | ACCAAAACCAAAACCAGGACAG | 59.500 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1939 | 2334 | 3.679389 | ACCAGGACAGCTCATACTTTTG | 58.321 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
1942 | 2337 | 3.373439 | CAGGACAGCTCATACTTTTGCTC | 59.627 | 47.826 | 0.00 | 0.00 | 33.03 | 4.26 |
1945 | 2340 | 4.248859 | GACAGCTCATACTTTTGCTCTCA | 58.751 | 43.478 | 0.00 | 0.00 | 33.03 | 3.27 |
1946 | 2341 | 3.999663 | ACAGCTCATACTTTTGCTCTCAC | 59.000 | 43.478 | 0.00 | 0.00 | 33.03 | 3.51 |
1947 | 2342 | 3.999001 | CAGCTCATACTTTTGCTCTCACA | 59.001 | 43.478 | 0.00 | 0.00 | 33.03 | 3.58 |
1948 | 2343 | 4.453478 | CAGCTCATACTTTTGCTCTCACAA | 59.547 | 41.667 | 0.00 | 0.00 | 33.03 | 3.33 |
1949 | 2344 | 5.049198 | CAGCTCATACTTTTGCTCTCACAAA | 60.049 | 40.000 | 0.00 | 0.00 | 37.74 | 2.83 |
1957 | 2352 | 5.405269 | ACTTTTGCTCTCACAAACAAAACAC | 59.595 | 36.000 | 0.00 | 0.00 | 39.18 | 3.32 |
1967 | 2362 | 9.645059 | TCTCACAAACAAAACACATTAAATGAA | 57.355 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
2025 | 2420 | 8.099537 | CCATTGGATGAGCAATATCTAAGTACT | 58.900 | 37.037 | 0.00 | 0.00 | 30.24 | 2.73 |
2063 | 2530 | 9.925545 | TGATATGGCTTAGGATATAATGCATTT | 57.074 | 29.630 | 18.75 | 8.19 | 0.00 | 2.32 |
2066 | 2533 | 5.185635 | TGGCTTAGGATATAATGCATTTGGC | 59.814 | 40.000 | 18.75 | 7.37 | 45.13 | 4.52 |
2093 | 2560 | 1.206878 | TAGTGCTGATGAGGGCATGT | 58.793 | 50.000 | 0.00 | 0.00 | 40.66 | 3.21 |
2109 | 2576 | 5.951747 | AGGGCATGTACAATAGTTGTTGATT | 59.048 | 36.000 | 0.00 | 0.00 | 42.22 | 2.57 |
2133 | 2600 | 8.718102 | TTAGATAGTATTTCTGTGCCTTTCAC | 57.282 | 34.615 | 0.00 | 0.00 | 45.82 | 3.18 |
2258 | 2747 | 6.377327 | AAAAGTTATCATATCCTGGTTGCG | 57.623 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
2350 | 2839 | 8.093927 | GGTCAAATCTTGGATCCTCTCTATAAG | 58.906 | 40.741 | 14.23 | 6.36 | 0.00 | 1.73 |
2371 | 2860 | 1.068352 | ATCCTCCCATACCCCTTGGC | 61.068 | 60.000 | 0.00 | 0.00 | 32.60 | 4.52 |
2654 | 3157 | 4.771590 | TTCATGAGGTGCTTTGATTGAC | 57.228 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
2723 | 3236 | 2.182842 | GGATGGTGTGCGCATCCTC | 61.183 | 63.158 | 26.50 | 21.26 | 38.40 | 3.71 |
2758 | 3271 | 5.879223 | AGTCACTTGAGAGCCTATCATTTTG | 59.121 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2765 | 3278 | 6.057533 | TGAGAGCCTATCATTTTGTACATGG | 58.942 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2766 | 3279 | 6.006275 | AGAGCCTATCATTTTGTACATGGT | 57.994 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
2955 | 3494 | 2.256461 | GCTGAAAACAGCCTGGCG | 59.744 | 61.111 | 13.96 | 10.87 | 42.05 | 5.69 |
3269 | 3852 | 4.158949 | TCCAAATTATCGTCGAACTCCTGA | 59.841 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
3683 | 4349 | 4.246206 | TCGCGCCGTCGACTATGG | 62.246 | 66.667 | 14.70 | 8.82 | 38.10 | 2.74 |
3806 | 4474 | 1.592939 | GCGAGAAATCGAGAGGGGC | 60.593 | 63.158 | 1.17 | 0.00 | 34.64 | 5.80 |
3845 | 4521 | 3.056754 | GCGGGGATAGGGTTTGGCT | 62.057 | 63.158 | 0.00 | 0.00 | 0.00 | 4.75 |
3861 | 4537 | 2.905807 | GCTCCGTATACTCGCCGCT | 61.906 | 63.158 | 0.56 | 0.00 | 0.00 | 5.52 |
3874 | 4550 | 0.179140 | CGCCGCTAACCCGTAGTTAA | 60.179 | 55.000 | 0.00 | 0.00 | 40.43 | 2.01 |
3876 | 4552 | 2.345876 | GCCGCTAACCCGTAGTTAAAA | 58.654 | 47.619 | 0.00 | 0.00 | 40.43 | 1.52 |
3877 | 4553 | 2.349580 | GCCGCTAACCCGTAGTTAAAAG | 59.650 | 50.000 | 0.00 | 0.00 | 40.43 | 2.27 |
3879 | 4555 | 3.588955 | CGCTAACCCGTAGTTAAAAGGT | 58.411 | 45.455 | 0.00 | 0.00 | 40.43 | 3.50 |
3880 | 4556 | 3.996363 | CGCTAACCCGTAGTTAAAAGGTT | 59.004 | 43.478 | 0.00 | 0.00 | 40.43 | 3.50 |
3881 | 4557 | 4.452114 | CGCTAACCCGTAGTTAAAAGGTTT | 59.548 | 41.667 | 0.00 | 0.00 | 40.43 | 3.27 |
3882 | 4558 | 5.637387 | CGCTAACCCGTAGTTAAAAGGTTTA | 59.363 | 40.000 | 0.00 | 0.00 | 40.43 | 2.01 |
3883 | 4559 | 6.401047 | CGCTAACCCGTAGTTAAAAGGTTTAC | 60.401 | 42.308 | 0.00 | 0.00 | 40.43 | 2.01 |
3954 | 4665 | 1.415374 | CCGTATAGTCGCCGGATTTG | 58.585 | 55.000 | 5.05 | 0.00 | 44.41 | 2.32 |
4004 | 4715 | 2.173126 | AGAGATGCTCTTAGTGGGCT | 57.827 | 50.000 | 0.00 | 0.00 | 37.60 | 5.19 |
4014 | 4725 | 1.822990 | CTTAGTGGGCTACTCAACCGA | 59.177 | 52.381 | 6.84 | 0.00 | 40.89 | 4.69 |
4120 | 4831 | 1.202348 | ACATGATCGCGTCAAGAGTGA | 59.798 | 47.619 | 16.68 | 0.00 | 40.97 | 3.41 |
4160 | 4871 | 6.321821 | ACCATACCTCCTAATTAGTTGCAA | 57.678 | 37.500 | 11.50 | 0.00 | 0.00 | 4.08 |
4462 | 5744 | 7.600065 | TCAGTACAACAGAAACTGTATCTACC | 58.400 | 38.462 | 4.84 | 0.00 | 44.62 | 3.18 |
4742 | 6024 | 5.187967 | GGTAACTCCCTATCCATACCTGATG | 59.812 | 48.000 | 0.00 | 0.00 | 32.06 | 3.07 |
4982 | 6271 | 7.086685 | TCCTGGTAGAAATTTTACAGTCCTT | 57.913 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5032 | 6321 | 6.884280 | AGGGCAATCAGTTTATATGTTAGC | 57.116 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
5053 | 6342 | 2.958355 | CCAAGTTGTGATGGGACTGTTT | 59.042 | 45.455 | 1.45 | 0.00 | 32.87 | 2.83 |
5059 | 6348 | 4.286297 | TGTGATGGGACTGTTTAGGAAG | 57.714 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
5126 | 6415 | 9.671279 | TGTGAAATACAATCATGAGATAGTTGT | 57.329 | 29.630 | 14.29 | 14.29 | 36.06 | 3.32 |
5173 | 6462 | 9.863845 | TGTGAGATCAAGTATGTTTTTATCGTA | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 3.43 |
5193 | 6482 | 6.491394 | TCGTAAACTTTGAAGTGGAAATGTG | 58.509 | 36.000 | 0.00 | 0.00 | 39.66 | 3.21 |
5235 | 6524 | 1.028905 | TGCCCAAAAACCGTCTTCAG | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5263 | 6554 | 9.410556 | CATTTTACCTGACATTTCTTTAACTGG | 57.589 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
5377 | 6669 | 6.721208 | CCCCAGCCTGTACATCAATTATAAAT | 59.279 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5447 | 6739 | 6.442952 | TCACCGGAAACTCAAAAATTACATG | 58.557 | 36.000 | 9.46 | 0.00 | 0.00 | 3.21 |
5529 | 6822 | 0.664224 | ACCTTGTAAAAACCGGCGTG | 59.336 | 50.000 | 6.01 | 0.00 | 0.00 | 5.34 |
5555 | 6859 | 3.250744 | GTTCGATTGACGTGAATCCTCA | 58.749 | 45.455 | 19.96 | 3.78 | 43.13 | 3.86 |
5629 | 6934 | 3.686726 | CAGCCAACCTAGCTCAAACTTAG | 59.313 | 47.826 | 0.00 | 0.00 | 38.95 | 2.18 |
5840 | 7145 | 3.114606 | TCCCTGCCAAATCTATCTCACA | 58.885 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
5842 | 7147 | 2.868583 | CCTGCCAAATCTATCTCACACG | 59.131 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
5847 | 7152 | 4.740634 | GCCAAATCTATCTCACACGGATCA | 60.741 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
5944 | 7249 | 7.408543 | CCTATGAATGATATTGAAGTCCCCAT | 58.591 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
6073 | 7380 | 9.087871 | TCCATTCAAAACCATCTCTTTATTTCA | 57.912 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
6085 | 7392 | 6.049149 | TCTCTTTATTTCATAGCCGGAACTG | 58.951 | 40.000 | 5.05 | 0.00 | 0.00 | 3.16 |
6344 | 7726 | 4.573607 | GTGATTGCTGATCTGATTAGTGCA | 59.426 | 41.667 | 10.64 | 7.31 | 35.69 | 4.57 |
6386 | 7770 | 2.824341 | GTCTCGGAAGGACAGGAACTTA | 59.176 | 50.000 | 0.00 | 0.00 | 34.60 | 2.24 |
6404 | 7788 | 1.094785 | TATGCTTGAAAGAAGCCGCC | 58.905 | 50.000 | 4.05 | 0.00 | 42.36 | 6.13 |
6431 | 7815 | 1.531748 | CCAGTACATGGGGCGGATT | 59.468 | 57.895 | 0.00 | 0.00 | 46.36 | 3.01 |
6482 | 7866 | 3.450457 | ACCAATCTCTCTACAGGCTTCAG | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
6505 | 7889 | 2.084546 | GATTTGAACCTGAAGACGGGG | 58.915 | 52.381 | 0.00 | 0.00 | 46.20 | 5.73 |
6507 | 7891 | 0.685097 | TTGAACCTGAAGACGGGGAG | 59.315 | 55.000 | 0.00 | 0.00 | 46.20 | 4.30 |
6532 | 7916 | 4.684877 | GCTAGAGGCTTAGTGTAGTTTCC | 58.315 | 47.826 | 0.00 | 0.00 | 38.06 | 3.13 |
6533 | 7917 | 4.441773 | GCTAGAGGCTTAGTGTAGTTTCCC | 60.442 | 50.000 | 0.00 | 0.00 | 38.06 | 3.97 |
6534 | 7918 | 3.517612 | AGAGGCTTAGTGTAGTTTCCCA | 58.482 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
6535 | 7919 | 3.908103 | AGAGGCTTAGTGTAGTTTCCCAA | 59.092 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
6573 | 7986 | 2.392662 | TCCTGTTAGAGATGGAGCTGG | 58.607 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
6579 | 7992 | 1.040339 | AGAGATGGAGCTGGTCGACC | 61.040 | 60.000 | 28.17 | 28.17 | 0.00 | 4.79 |
6581 | 7994 | 1.040339 | AGATGGAGCTGGTCGACCTC | 61.040 | 60.000 | 33.39 | 22.71 | 36.82 | 3.85 |
6586 | 7999 | 2.183046 | GCTGGTCGACCTCTGCTC | 59.817 | 66.667 | 33.39 | 13.09 | 36.82 | 4.26 |
6593 | 8006 | 4.500116 | GACCTCTGCTCCGCGACC | 62.500 | 72.222 | 8.23 | 0.00 | 0.00 | 4.79 |
6602 | 8015 | 4.753662 | TCCGCGACCCCTGCTAGT | 62.754 | 66.667 | 8.23 | 0.00 | 0.00 | 2.57 |
6614 | 8027 | 4.223953 | CCCCTGCTAGTCTATTCTTGGTA | 58.776 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
6615 | 8028 | 4.841246 | CCCCTGCTAGTCTATTCTTGGTAT | 59.159 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
6617 | 8030 | 5.336055 | CCCTGCTAGTCTATTCTTGGTATCG | 60.336 | 48.000 | 0.00 | 0.00 | 0.00 | 2.92 |
6619 | 8032 | 4.583073 | TGCTAGTCTATTCTTGGTATCGCA | 59.417 | 41.667 | 0.00 | 0.00 | 0.00 | 5.10 |
6622 | 8035 | 3.060602 | GTCTATTCTTGGTATCGCAGGC | 58.939 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
6624 | 8037 | 0.178068 | ATTCTTGGTATCGCAGGCGT | 59.822 | 50.000 | 13.83 | 3.96 | 40.74 | 5.68 |
6625 | 8038 | 0.739462 | TTCTTGGTATCGCAGGCGTG | 60.739 | 55.000 | 13.83 | 1.01 | 40.74 | 5.34 |
6674 | 8163 | 5.290643 | GCACTCAGTGAGTTCTGATAATGAC | 59.709 | 44.000 | 23.33 | 2.48 | 41.37 | 3.06 |
6677 | 8166 | 3.553511 | CAGTGAGTTCTGATAATGACGGC | 59.446 | 47.826 | 0.00 | 0.00 | 37.61 | 5.68 |
6689 | 8178 | 0.802494 | ATGACGGCGGTGATTTTGAC | 59.198 | 50.000 | 13.24 | 0.00 | 0.00 | 3.18 |
6690 | 8179 | 0.533085 | TGACGGCGGTGATTTTGACA | 60.533 | 50.000 | 13.24 | 0.00 | 0.00 | 3.58 |
6696 | 8185 | 3.561503 | GGCGGTGATTTTGACAGTAAAC | 58.438 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
6697 | 8186 | 3.003897 | GGCGGTGATTTTGACAGTAAACA | 59.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
6707 | 8196 | 5.666969 | TTGACAGTAAACACTGGAAATCG | 57.333 | 39.130 | 9.42 | 0.00 | 41.76 | 3.34 |
6746 | 8238 | 5.425539 | CCTAATCTAGGTCAAAGGAGTGGAA | 59.574 | 44.000 | 0.00 | 0.00 | 41.18 | 3.53 |
6770 | 8262 | 1.837051 | CTCTATGGCGCCCCTGGTA | 60.837 | 63.158 | 26.77 | 3.54 | 0.00 | 3.25 |
6776 | 8268 | 3.085296 | GCGCCCCTGGTACCCTTA | 61.085 | 66.667 | 10.07 | 0.00 | 0.00 | 2.69 |
6778 | 8270 | 1.450211 | CGCCCCTGGTACCCTTATG | 59.550 | 63.158 | 10.07 | 0.00 | 0.00 | 1.90 |
6781 | 8273 | 1.222567 | CCCCTGGTACCCTTATGCTT | 58.777 | 55.000 | 10.07 | 0.00 | 0.00 | 3.91 |
6793 | 8285 | 3.403038 | CCTTATGCTTCGGTTATGGAGG | 58.597 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6796 | 8288 | 0.107703 | TGCTTCGGTTATGGAGGCTG | 60.108 | 55.000 | 0.00 | 0.00 | 37.40 | 4.85 |
6797 | 8289 | 0.815615 | GCTTCGGTTATGGAGGCTGG | 60.816 | 60.000 | 0.00 | 0.00 | 34.09 | 4.85 |
6801 | 8293 | 0.469917 | CGGTTATGGAGGCTGGATGT | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6825 | 8549 | 3.706594 | AGTGTGAGGACGTTCATGGATAT | 59.293 | 43.478 | 0.00 | 0.00 | 0.00 | 1.63 |
6831 | 8555 | 4.219115 | AGGACGTTCATGGATATGAGTCT | 58.781 | 43.478 | 0.00 | 0.00 | 43.76 | 3.24 |
6833 | 8557 | 4.302455 | GACGTTCATGGATATGAGTCTGG | 58.698 | 47.826 | 0.00 | 0.00 | 43.76 | 3.86 |
6834 | 8558 | 3.960755 | ACGTTCATGGATATGAGTCTGGA | 59.039 | 43.478 | 0.00 | 0.00 | 43.76 | 3.86 |
6835 | 8559 | 4.038522 | ACGTTCATGGATATGAGTCTGGAG | 59.961 | 45.833 | 0.00 | 0.00 | 43.76 | 3.86 |
6836 | 8560 | 4.560311 | CGTTCATGGATATGAGTCTGGAGG | 60.560 | 50.000 | 0.00 | 0.00 | 43.76 | 4.30 |
6837 | 8561 | 4.204792 | TCATGGATATGAGTCTGGAGGT | 57.795 | 45.455 | 0.00 | 0.00 | 38.37 | 3.85 |
6838 | 8562 | 5.339423 | TCATGGATATGAGTCTGGAGGTA | 57.661 | 43.478 | 0.00 | 0.00 | 38.37 | 3.08 |
6839 | 8563 | 5.715921 | TCATGGATATGAGTCTGGAGGTAA | 58.284 | 41.667 | 0.00 | 0.00 | 38.37 | 2.85 |
6840 | 8564 | 6.326161 | TCATGGATATGAGTCTGGAGGTAAT | 58.674 | 40.000 | 0.00 | 0.00 | 38.37 | 1.89 |
6841 | 8565 | 6.212187 | TCATGGATATGAGTCTGGAGGTAATG | 59.788 | 42.308 | 0.00 | 0.00 | 38.37 | 1.90 |
6842 | 8566 | 5.467738 | TGGATATGAGTCTGGAGGTAATGT | 58.532 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
6843 | 8567 | 5.905331 | TGGATATGAGTCTGGAGGTAATGTT | 59.095 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
6848 | 8572 | 2.904434 | AGTCTGGAGGTAATGTTCGGTT | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
6866 | 8590 | 9.316730 | TGTTCGGTTATGTTGGTTTATACTATC | 57.683 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
6909 | 8651 | 5.276461 | TGTAGTGCTCTCTTGACAGAAAA | 57.724 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
6910 | 8652 | 5.292765 | TGTAGTGCTCTCTTGACAGAAAAG | 58.707 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
6911 | 8653 | 4.414337 | AGTGCTCTCTTGACAGAAAAGT | 57.586 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
6912 | 8654 | 4.376146 | AGTGCTCTCTTGACAGAAAAGTC | 58.624 | 43.478 | 0.00 | 0.00 | 38.99 | 3.01 |
6913 | 8655 | 4.100808 | AGTGCTCTCTTGACAGAAAAGTCT | 59.899 | 41.667 | 0.00 | 0.00 | 39.27 | 3.24 |
6915 | 8657 | 3.993736 | GCTCTCTTGACAGAAAAGTCTCC | 59.006 | 47.826 | 0.00 | 0.00 | 39.27 | 3.71 |
6916 | 8658 | 4.262420 | GCTCTCTTGACAGAAAAGTCTCCT | 60.262 | 45.833 | 0.00 | 0.00 | 39.27 | 3.69 |
6917 | 8659 | 5.461032 | TCTCTTGACAGAAAAGTCTCCTC | 57.539 | 43.478 | 0.00 | 0.00 | 39.27 | 3.71 |
6918 | 8660 | 4.022762 | TCTCTTGACAGAAAAGTCTCCTCG | 60.023 | 45.833 | 0.00 | 0.00 | 39.27 | 4.63 |
6929 | 8671 | 2.754658 | CTCCTCGGTAGGCGGTGT | 60.755 | 66.667 | 0.00 | 0.00 | 43.31 | 4.16 |
6957 | 8699 | 3.750371 | TCCTTGGGTTGATGTGTTGTAG | 58.250 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
6958 | 8700 | 3.392947 | TCCTTGGGTTGATGTGTTGTAGA | 59.607 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
6960 | 8702 | 5.249622 | TCCTTGGGTTGATGTGTTGTAGATA | 59.750 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
6961 | 8703 | 5.943416 | CCTTGGGTTGATGTGTTGTAGATAA | 59.057 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
6968 | 8710 | 7.692291 | GGTTGATGTGTTGTAGATAATTTGACG | 59.308 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
6969 | 8711 | 7.899178 | TGATGTGTTGTAGATAATTTGACGT | 57.101 | 32.000 | 0.00 | 0.00 | 0.00 | 4.34 |
6991 | 8738 | 9.125906 | GACGTATCATTGATACTACATGGTTAC | 57.874 | 37.037 | 26.34 | 6.51 | 41.71 | 2.50 |
7004 | 8751 | 3.830755 | ACATGGTTACTGTAGTTCGGAGT | 59.169 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
7040 | 8792 | 3.442977 | ACTCGGAGTACCAATACACTGTC | 59.557 | 47.826 | 9.33 | 0.00 | 33.30 | 3.51 |
7045 | 8797 | 0.173935 | TACCAATACACTGTCGCGGG | 59.826 | 55.000 | 6.13 | 0.00 | 0.00 | 6.13 |
7128 | 8939 | 6.173427 | ACTAACGTTGGGGAGTAAAAAGTA | 57.827 | 37.500 | 16.48 | 0.00 | 0.00 | 2.24 |
7129 | 8940 | 5.991606 | ACTAACGTTGGGGAGTAAAAAGTAC | 59.008 | 40.000 | 16.48 | 0.00 | 0.00 | 2.73 |
7152 | 8963 | 2.233271 | ACATTGTTGAAGGGAGCACAG | 58.767 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
7219 | 9030 | 4.696455 | ACAACTTGCCCTCAGAATTTTTG | 58.304 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
7233 | 9081 | 8.659569 | TCAGAATTTTTGAATTTCGAAGATCG | 57.340 | 30.769 | 0.00 | 0.00 | 42.10 | 3.69 |
7235 | 9083 | 7.272084 | CAGAATTTTTGAATTTCGAAGATCGCT | 59.728 | 33.333 | 0.00 | 2.74 | 40.21 | 4.93 |
7242 | 9090 | 6.042777 | TGAATTTCGAAGATCGCTACAAGAT | 58.957 | 36.000 | 0.00 | 0.00 | 40.21 | 2.40 |
7334 | 11456 | 2.430465 | CACAGCAATGTCAACCTAGCT | 58.570 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
7335 | 11457 | 3.599343 | CACAGCAATGTCAACCTAGCTA | 58.401 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
7336 | 11458 | 3.372206 | CACAGCAATGTCAACCTAGCTAC | 59.628 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
7337 | 11459 | 3.261897 | ACAGCAATGTCAACCTAGCTACT | 59.738 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
7338 | 11460 | 4.466370 | ACAGCAATGTCAACCTAGCTACTA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
7339 | 11461 | 4.806247 | CAGCAATGTCAACCTAGCTACTAC | 59.194 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
7340 | 11462 | 3.797256 | GCAATGTCAACCTAGCTACTACG | 59.203 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
7376 | 11498 | 2.435372 | TATTTAAGGCCACCCTGCTG | 57.565 | 50.000 | 5.01 | 0.00 | 41.90 | 4.41 |
7377 | 11499 | 0.972471 | ATTTAAGGCCACCCTGCTGC | 60.972 | 55.000 | 5.01 | 0.00 | 41.90 | 5.25 |
7378 | 11500 | 2.080336 | TTTAAGGCCACCCTGCTGCT | 62.080 | 55.000 | 5.01 | 0.00 | 41.90 | 4.24 |
7391 | 11513 | 0.905357 | TGCTGCTACTTCTTCCCCTC | 59.095 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
7394 | 11516 | 0.417841 | TGCTACTTCTTCCCCTCCCT | 59.582 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
7395 | 11517 | 1.124780 | GCTACTTCTTCCCCTCCCTC | 58.875 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
7406 | 11536 | 2.284699 | CTCCCTCCCTCCCAACGT | 60.285 | 66.667 | 0.00 | 0.00 | 0.00 | 3.99 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 9.734620 | CGTGTAATGTATCCAAAATTTCATGAT | 57.265 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
8 | 9 | 6.978080 | GGCGTGTAATGTATCCAAAATTTCAT | 59.022 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
9 | 10 | 6.151985 | AGGCGTGTAATGTATCCAAAATTTCA | 59.848 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
10 | 11 | 6.472163 | CAGGCGTGTAATGTATCCAAAATTTC | 59.528 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
11 | 12 | 6.071616 | ACAGGCGTGTAATGTATCCAAAATTT | 60.072 | 34.615 | 10.95 | 0.00 | 34.05 | 1.82 |
12 | 13 | 5.417580 | ACAGGCGTGTAATGTATCCAAAATT | 59.582 | 36.000 | 10.95 | 0.00 | 34.05 | 1.82 |
13 | 14 | 4.947388 | ACAGGCGTGTAATGTATCCAAAAT | 59.053 | 37.500 | 10.95 | 0.00 | 34.05 | 1.82 |
14 | 15 | 4.155099 | CACAGGCGTGTAATGTATCCAAAA | 59.845 | 41.667 | 12.40 | 0.00 | 38.41 | 2.44 |
15 | 16 | 3.687212 | CACAGGCGTGTAATGTATCCAAA | 59.313 | 43.478 | 12.40 | 0.00 | 38.41 | 3.28 |
16 | 17 | 3.266636 | CACAGGCGTGTAATGTATCCAA | 58.733 | 45.455 | 12.40 | 0.00 | 38.41 | 3.53 |
17 | 18 | 2.899976 | CACAGGCGTGTAATGTATCCA | 58.100 | 47.619 | 12.40 | 0.00 | 38.41 | 3.41 |
29 | 30 | 1.600636 | CACCCAATCACACAGGCGT | 60.601 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
30 | 31 | 1.302431 | TCACCCAATCACACAGGCG | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
31 | 32 | 0.250901 | AGTCACCCAATCACACAGGC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
32 | 33 | 3.634397 | ATAGTCACCCAATCACACAGG | 57.366 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
33 | 34 | 5.702865 | CAAAATAGTCACCCAATCACACAG | 58.297 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
34 | 35 | 4.022416 | GCAAAATAGTCACCCAATCACACA | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
35 | 36 | 4.485163 | GCAAAATAGTCACCCAATCACAC | 58.515 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
54 | 55 | 4.155709 | TCCCATTTAACACAATCAGGCAA | 58.844 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
60 | 61 | 5.733676 | AGGCAAATCCCATTTAACACAATC | 58.266 | 37.500 | 0.00 | 0.00 | 34.51 | 2.67 |
70 | 71 | 1.284785 | TCGAAGGAGGCAAATCCCATT | 59.715 | 47.619 | 0.00 | 0.00 | 40.53 | 3.16 |
100 | 101 | 4.318332 | CTTCATGTTTGAGCCACTCACTA | 58.682 | 43.478 | 0.00 | 0.00 | 40.46 | 2.74 |
115 | 116 | 3.766051 | GGCTCAATTTCCTTCCTTCATGT | 59.234 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
139 | 140 | 0.326618 | AGTGGTAGCCAGTAGCCCAT | 60.327 | 55.000 | 0.00 | 0.00 | 45.47 | 4.00 |
164 | 165 | 3.408634 | CTCCCTTGTTTCTTCGCCTTAA | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
193 | 194 | 2.649816 | AGGAGCCTTAATTGGACCAAGT | 59.350 | 45.455 | 13.43 | 12.96 | 0.00 | 3.16 |
282 | 294 | 8.532977 | AAAAACGTCCAAGGATTTAAATCATG | 57.467 | 30.769 | 25.55 | 21.91 | 37.15 | 3.07 |
283 | 295 | 7.817478 | GGAAAAACGTCCAAGGATTTAAATCAT | 59.183 | 33.333 | 25.55 | 18.39 | 37.65 | 2.45 |
285 | 297 | 7.375834 | AGGAAAAACGTCCAAGGATTTAAATC | 58.624 | 34.615 | 18.22 | 18.22 | 40.48 | 2.17 |
286 | 298 | 7.297936 | AGGAAAAACGTCCAAGGATTTAAAT | 57.702 | 32.000 | 0.00 | 0.00 | 40.48 | 1.40 |
291 | 307 | 4.211920 | TCAAGGAAAAACGTCCAAGGATT | 58.788 | 39.130 | 0.00 | 0.00 | 40.48 | 3.01 |
298 | 314 | 8.699749 | CAAATTAATCTTCAAGGAAAAACGTCC | 58.300 | 33.333 | 0.00 | 0.00 | 38.03 | 4.79 |
300 | 316 | 7.708752 | TGCAAATTAATCTTCAAGGAAAAACGT | 59.291 | 29.630 | 0.00 | 0.00 | 0.00 | 3.99 |
301 | 317 | 8.003784 | GTGCAAATTAATCTTCAAGGAAAAACG | 58.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
302 | 318 | 9.045223 | AGTGCAAATTAATCTTCAAGGAAAAAC | 57.955 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
311 | 327 | 7.894708 | TCAAATGGAGTGCAAATTAATCTTCA | 58.105 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
312 | 328 | 8.761575 | TTCAAATGGAGTGCAAATTAATCTTC | 57.238 | 30.769 | 0.00 | 0.00 | 0.00 | 2.87 |
351 | 367 | 4.789012 | TGGATGAAAGAGGTTTGATTGC | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
353 | 369 | 8.654094 | AGAAATTTGGATGAAAGAGGTTTGATT | 58.346 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
354 | 370 | 8.198807 | AGAAATTTGGATGAAAGAGGTTTGAT | 57.801 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
535 | 552 | 1.442857 | GGTCGAGCTCAGTGTCACG | 60.443 | 63.158 | 15.40 | 0.00 | 0.00 | 4.35 |
536 | 553 | 0.664767 | GTGGTCGAGCTCAGTGTCAC | 60.665 | 60.000 | 16.64 | 10.20 | 0.00 | 3.67 |
537 | 554 | 0.823769 | AGTGGTCGAGCTCAGTGTCA | 60.824 | 55.000 | 16.64 | 1.44 | 0.00 | 3.58 |
543 | 560 | 2.026945 | TTGTGCAGTGGTCGAGCTCA | 62.027 | 55.000 | 16.64 | 5.24 | 0.00 | 4.26 |
562 | 579 | 2.928801 | TTCGCCATACATATGCACCT | 57.071 | 45.000 | 1.58 | 0.00 | 32.40 | 4.00 |
578 | 825 | 5.459768 | TGTGTTGACCAATGAATGAATTCG | 58.540 | 37.500 | 0.04 | 0.00 | 39.62 | 3.34 |
632 | 879 | 6.215431 | TCCCTCCGATCCATATTATTTGTCAT | 59.785 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
633 | 880 | 5.546110 | TCCCTCCGATCCATATTATTTGTCA | 59.454 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
636 | 883 | 6.054860 | ACTCCCTCCGATCCATATTATTTG | 57.945 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
639 | 886 | 6.261435 | TGTTACTCCCTCCGATCCATATTAT | 58.739 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
710 | 960 | 7.841282 | TGTTGGAAAAACTTCATATAACCCA | 57.159 | 32.000 | 0.00 | 0.00 | 0.00 | 4.51 |
724 | 974 | 7.884816 | TTTTTGTTACGTCATGTTGGAAAAA | 57.115 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
801 | 1053 | 7.720442 | AGAAAATGCTCCCAAAATCTTATAGC | 58.280 | 34.615 | 0.00 | 0.00 | 0.00 | 2.97 |
858 | 1111 | 7.452880 | TCTGAAATTCGAGAAAAATGGATGT | 57.547 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
859 | 1112 | 8.746922 | TTTCTGAAATTCGAGAAAAATGGATG | 57.253 | 30.769 | 13.93 | 0.00 | 35.69 | 3.51 |
929 | 1257 | 4.279671 | TCCTATTCATTCTCTCGCTCCTTC | 59.720 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
938 | 1266 | 2.366916 | CCACCGCTCCTATTCATTCTCT | 59.633 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
939 | 1267 | 2.103263 | ACCACCGCTCCTATTCATTCTC | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
940 | 1268 | 2.119495 | ACCACCGCTCCTATTCATTCT | 58.881 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
941 | 1269 | 2.158957 | TCACCACCGCTCCTATTCATTC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
942 | 1270 | 1.837439 | TCACCACCGCTCCTATTCATT | 59.163 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
943 | 1271 | 1.139058 | GTCACCACCGCTCCTATTCAT | 59.861 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
944 | 1272 | 0.535335 | GTCACCACCGCTCCTATTCA | 59.465 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1087 | 1415 | 3.794270 | GCAGCGCGTTCTGGATAA | 58.206 | 55.556 | 8.43 | 0.00 | 34.74 | 1.75 |
1278 | 1606 | 2.124293 | CGATTCATCGTCCTCCCCA | 58.876 | 57.895 | 0.80 | 0.00 | 44.74 | 4.96 |
1374 | 1720 | 0.460987 | GCATCCACTCCTCCACTTCG | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1470 | 1816 | 4.351938 | CAGGCGACGTCCGTGGAA | 62.352 | 66.667 | 10.58 | 0.00 | 41.15 | 3.53 |
1556 | 1902 | 5.461526 | GGAAAAGAACACCTGCACTAATTC | 58.538 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
1568 | 1914 | 1.866925 | CCGCTCGGGAAAAGAACAC | 59.133 | 57.895 | 0.00 | 0.00 | 38.47 | 3.32 |
1620 | 1966 | 3.008049 | AGTGACCACTACAAGTCCCAATC | 59.992 | 47.826 | 0.03 | 0.00 | 40.43 | 2.67 |
1627 | 1973 | 0.396811 | GGGCAGTGACCACTACAAGT | 59.603 | 55.000 | 11.25 | 0.00 | 40.20 | 3.16 |
1638 | 1990 | 2.359850 | GCGTCCAATGGGCAGTGA | 60.360 | 61.111 | 4.21 | 0.00 | 0.00 | 3.41 |
1640 | 1992 | 2.048023 | CATGCGTCCAATGGGCAGT | 61.048 | 57.895 | 4.21 | 0.00 | 40.44 | 4.40 |
1642 | 1994 | 0.322906 | TAACATGCGTCCAATGGGCA | 60.323 | 50.000 | 4.21 | 5.06 | 41.48 | 5.36 |
1643 | 1995 | 0.814457 | TTAACATGCGTCCAATGGGC | 59.186 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1644 | 1996 | 2.091541 | ACTTAACATGCGTCCAATGGG | 58.908 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1645 | 1997 | 3.312421 | CCTACTTAACATGCGTCCAATGG | 59.688 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
1646 | 1998 | 4.188462 | TCCTACTTAACATGCGTCCAATG | 58.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
1648 | 2000 | 3.259876 | ACTCCTACTTAACATGCGTCCAA | 59.740 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
1649 | 2001 | 2.829720 | ACTCCTACTTAACATGCGTCCA | 59.170 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
1650 | 2002 | 3.521947 | ACTCCTACTTAACATGCGTCC | 57.478 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
1651 | 2003 | 6.755141 | TCAAATACTCCTACTTAACATGCGTC | 59.245 | 38.462 | 0.00 | 0.00 | 0.00 | 5.19 |
1652 | 2004 | 6.636705 | TCAAATACTCCTACTTAACATGCGT | 58.363 | 36.000 | 0.00 | 0.00 | 0.00 | 5.24 |
1653 | 2005 | 6.757010 | ACTCAAATACTCCTACTTAACATGCG | 59.243 | 38.462 | 0.00 | 0.00 | 0.00 | 4.73 |
1654 | 2006 | 7.549488 | ACACTCAAATACTCCTACTTAACATGC | 59.451 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
1655 | 2007 | 9.436957 | AACACTCAAATACTCCTACTTAACATG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
1657 | 2009 | 9.485206 | GAAACACTCAAATACTCCTACTTAACA | 57.515 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
1658 | 2010 | 9.485206 | TGAAACACTCAAATACTCCTACTTAAC | 57.515 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
1665 | 2017 | 9.911788 | ATGATAATGAAACACTCAAATACTCCT | 57.088 | 29.630 | 0.00 | 0.00 | 37.67 | 3.69 |
1666 | 2018 | 9.941664 | CATGATAATGAAACACTCAAATACTCC | 57.058 | 33.333 | 0.00 | 0.00 | 37.67 | 3.85 |
1671 | 2023 | 9.850628 | CTGAACATGATAATGAAACACTCAAAT | 57.149 | 29.630 | 0.00 | 0.00 | 37.67 | 2.32 |
1672 | 2024 | 7.809331 | GCTGAACATGATAATGAAACACTCAAA | 59.191 | 33.333 | 0.00 | 0.00 | 37.67 | 2.69 |
1673 | 2025 | 7.175467 | AGCTGAACATGATAATGAAACACTCAA | 59.825 | 33.333 | 0.00 | 0.00 | 37.67 | 3.02 |
1674 | 2026 | 6.656270 | AGCTGAACATGATAATGAAACACTCA | 59.344 | 34.615 | 0.00 | 0.00 | 38.81 | 3.41 |
1694 | 2069 | 1.297689 | GGCATGGAGTCACAGCTGA | 59.702 | 57.895 | 23.35 | 0.00 | 0.00 | 4.26 |
1695 | 2070 | 0.393944 | ATGGCATGGAGTCACAGCTG | 60.394 | 55.000 | 13.48 | 13.48 | 32.48 | 4.24 |
1696 | 2071 | 0.330604 | AATGGCATGGAGTCACAGCT | 59.669 | 50.000 | 0.00 | 0.00 | 32.48 | 4.24 |
1697 | 2072 | 1.180029 | AAATGGCATGGAGTCACAGC | 58.820 | 50.000 | 0.00 | 0.00 | 32.48 | 4.40 |
1698 | 2073 | 3.087031 | AGAAAATGGCATGGAGTCACAG | 58.913 | 45.455 | 0.00 | 0.00 | 32.48 | 3.66 |
1700 | 2075 | 2.416431 | GCAGAAAATGGCATGGAGTCAC | 60.416 | 50.000 | 0.00 | 0.00 | 32.48 | 3.67 |
1703 | 2078 | 2.226962 | AGCAGAAAATGGCATGGAGT | 57.773 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1704 | 2079 | 4.724074 | TTAAGCAGAAAATGGCATGGAG | 57.276 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
1705 | 2080 | 5.011943 | ACTTTTAAGCAGAAAATGGCATGGA | 59.988 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1706 | 2081 | 5.240121 | ACTTTTAAGCAGAAAATGGCATGG | 58.760 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
1707 | 2082 | 6.790285 | AACTTTTAAGCAGAAAATGGCATG | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
1708 | 2083 | 7.806409 | AAAACTTTTAAGCAGAAAATGGCAT | 57.194 | 28.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1709 | 2084 | 7.622893 | AAAAACTTTTAAGCAGAAAATGGCA | 57.377 | 28.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1732 | 2107 | 4.262851 | GCCCAAAGAAATAGCAAGGGAAAA | 60.263 | 41.667 | 0.00 | 0.00 | 36.96 | 2.29 |
1757 | 2132 | 4.342378 | ACAAGTCAGACTGTGAGCTTCTAA | 59.658 | 41.667 | 3.05 | 0.00 | 35.13 | 2.10 |
1772 | 2147 | 4.579869 | ACAGCCCTAACAATACAAGTCAG | 58.420 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1822 | 2214 | 3.125316 | CACATCCGACTTTTGCTTAGGTC | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
1835 | 2227 | 0.180406 | AATAGGGTGCCACATCCGAC | 59.820 | 55.000 | 0.00 | 0.00 | 40.09 | 4.79 |
1838 | 2230 | 2.616842 | CGTTAAATAGGGTGCCACATCC | 59.383 | 50.000 | 0.00 | 0.00 | 34.24 | 3.51 |
1850 | 2242 | 9.505995 | GTAACTCTCTCTTTCCTCGTTAAATAG | 57.494 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
1853 | 2248 | 6.266103 | TGGTAACTCTCTCTTTCCTCGTTAAA | 59.734 | 38.462 | 0.00 | 0.00 | 37.61 | 1.52 |
1861 | 2256 | 5.669164 | AGACATGGTAACTCTCTCTTTCC | 57.331 | 43.478 | 0.00 | 0.00 | 37.61 | 3.13 |
1888 | 2283 | 7.600752 | GGTTTTGGTGCTAAGAGCTATATCTAG | 59.399 | 40.741 | 0.00 | 0.00 | 42.97 | 2.43 |
1917 | 2312 | 4.074970 | CAAAAGTATGAGCTGTCCTGGTT | 58.925 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
1918 | 2313 | 3.679389 | CAAAAGTATGAGCTGTCCTGGT | 58.321 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
1919 | 2314 | 2.421424 | GCAAAAGTATGAGCTGTCCTGG | 59.579 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1920 | 2315 | 3.341823 | AGCAAAAGTATGAGCTGTCCTG | 58.658 | 45.455 | 0.00 | 0.00 | 35.72 | 3.86 |
1921 | 2316 | 3.262915 | AGAGCAAAAGTATGAGCTGTCCT | 59.737 | 43.478 | 0.00 | 0.00 | 37.48 | 3.85 |
1922 | 2317 | 3.604582 | AGAGCAAAAGTATGAGCTGTCC | 58.395 | 45.455 | 0.00 | 0.00 | 37.48 | 4.02 |
1927 | 2322 | 5.149977 | GTTTGTGAGAGCAAAAGTATGAGC | 58.850 | 41.667 | 0.00 | 0.00 | 39.65 | 4.26 |
1939 | 2334 | 7.518731 | TTTAATGTGTTTTGTTTGTGAGAGC | 57.481 | 32.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1945 | 2340 | 8.945057 | AGCTTTCATTTAATGTGTTTTGTTTGT | 58.055 | 25.926 | 4.77 | 0.00 | 0.00 | 2.83 |
1946 | 2341 | 9.424659 | GAGCTTTCATTTAATGTGTTTTGTTTG | 57.575 | 29.630 | 4.77 | 0.00 | 0.00 | 2.93 |
1947 | 2342 | 9.382275 | AGAGCTTTCATTTAATGTGTTTTGTTT | 57.618 | 25.926 | 4.77 | 0.00 | 0.00 | 2.83 |
1948 | 2343 | 8.947055 | AGAGCTTTCATTTAATGTGTTTTGTT | 57.053 | 26.923 | 4.77 | 0.00 | 0.00 | 2.83 |
1949 | 2344 | 8.947055 | AAGAGCTTTCATTTAATGTGTTTTGT | 57.053 | 26.923 | 4.77 | 0.00 | 0.00 | 2.83 |
2043 | 2510 | 5.654497 | GCCAAATGCATTATATCCTAAGCC | 58.346 | 41.667 | 13.39 | 0.00 | 40.77 | 4.35 |
2044 | 2511 | 5.123820 | TCGCCAAATGCATTATATCCTAAGC | 59.876 | 40.000 | 13.39 | 4.70 | 41.33 | 3.09 |
2046 | 2513 | 5.123820 | GCTCGCCAAATGCATTATATCCTAA | 59.876 | 40.000 | 13.39 | 0.00 | 41.33 | 2.69 |
2063 | 2530 | 3.003173 | AGCACTAAGGGCTCGCCA | 61.003 | 61.111 | 10.51 | 0.00 | 36.81 | 5.69 |
2066 | 2533 | 0.461548 | TCATCAGCACTAAGGGCTCG | 59.538 | 55.000 | 0.00 | 0.00 | 40.23 | 5.03 |
2248 | 2718 | 2.668632 | GATCCACCGCAACCAGGA | 59.331 | 61.111 | 0.00 | 0.00 | 34.12 | 3.86 |
2276 | 2765 | 3.023119 | TGCGCCATGATTTTAAGTGGAT | 58.977 | 40.909 | 4.18 | 0.00 | 33.53 | 3.41 |
2350 | 2839 | 1.985895 | CCAAGGGGTATGGGAGGATAC | 59.014 | 57.143 | 0.00 | 0.00 | 34.15 | 2.24 |
2654 | 3157 | 5.059161 | TGACAAGAACTCCTCAAATGACAG | 58.941 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2723 | 3236 | 1.538512 | TCAAGTGACTCCTAACCGTCG | 59.461 | 52.381 | 0.00 | 0.00 | 32.93 | 5.12 |
2758 | 3271 | 1.583054 | GCCATCTCCGAACCATGTAC | 58.417 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2765 | 3278 | 1.473434 | CCAAGTAGGCCATCTCCGAAC | 60.473 | 57.143 | 5.01 | 0.00 | 0.00 | 3.95 |
2766 | 3279 | 0.830648 | CCAAGTAGGCCATCTCCGAA | 59.169 | 55.000 | 5.01 | 0.00 | 0.00 | 4.30 |
2955 | 3494 | 8.926715 | ACAGGTTCATTTTAAGTTTCTGTTTC | 57.073 | 30.769 | 0.00 | 0.00 | 29.96 | 2.78 |
3078 | 3649 | 2.805099 | CCGCTCCTCTGATCTATTTTGC | 59.195 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
3407 | 3994 | 3.016260 | GGGTTGGAGGATTCCCCC | 58.984 | 66.667 | 0.00 | 0.00 | 43.33 | 5.40 |
3408 | 3995 | 1.353394 | ATCGGGTTGGAGGATTCCCC | 61.353 | 60.000 | 0.00 | 1.18 | 43.33 | 4.81 |
3409 | 3996 | 0.179018 | CATCGGGTTGGAGGATTCCC | 60.179 | 60.000 | 0.00 | 0.00 | 43.33 | 3.97 |
3496 | 4112 | 1.000896 | ATGCCGGTGAAAAGGGAGG | 60.001 | 57.895 | 1.90 | 0.00 | 0.00 | 4.30 |
3845 | 4521 | 0.588252 | GTTAGCGGCGAGTATACGGA | 59.412 | 55.000 | 12.98 | 0.00 | 0.00 | 4.69 |
3874 | 4550 | 2.034532 | CCCGGCCCGTAAACCTTT | 59.965 | 61.111 | 0.85 | 0.00 | 0.00 | 3.11 |
3954 | 4665 | 3.331178 | CTTAAAATCGCGCGAACTGTAC | 58.669 | 45.455 | 38.07 | 0.00 | 0.00 | 2.90 |
4377 | 5363 | 8.230472 | AGATGTTTCTTGAAGGCCATTATTAG | 57.770 | 34.615 | 5.01 | 0.00 | 0.00 | 1.73 |
4742 | 6024 | 9.941325 | ATAACTGAGACAAGATCATGGATATTC | 57.059 | 33.333 | 2.59 | 0.00 | 0.00 | 1.75 |
4935 | 6224 | 8.611257 | AGGAATAGATACTCTGCAGTACTATCT | 58.389 | 37.037 | 22.61 | 22.61 | 37.97 | 1.98 |
5007 | 6296 | 7.119846 | GGCTAACATATAAACTGATTGCCCTAG | 59.880 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
5009 | 6298 | 5.770162 | GGCTAACATATAAACTGATTGCCCT | 59.230 | 40.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5012 | 6301 | 7.707104 | ACTTGGCTAACATATAAACTGATTGC | 58.293 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
5032 | 6321 | 2.276732 | ACAGTCCCATCACAACTTGG | 57.723 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
5053 | 6342 | 7.284074 | TCAACAAAACTTATGGACACTTCCTA | 58.716 | 34.615 | 0.00 | 0.00 | 43.31 | 2.94 |
5126 | 6415 | 1.612442 | GGACAGAGGGGGCACACTA | 60.612 | 63.158 | 0.00 | 0.00 | 0.00 | 2.74 |
5173 | 6462 | 6.036577 | ACACACATTTCCACTTCAAAGTTT | 57.963 | 33.333 | 0.00 | 0.00 | 37.08 | 2.66 |
5180 | 6469 | 4.601019 | CACAGAACACACATTTCCACTTC | 58.399 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5184 | 6473 | 2.373224 | TGCACAGAACACACATTTCCA | 58.627 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
5193 | 6482 | 0.040958 | CGAAGGCTTGCACAGAACAC | 60.041 | 55.000 | 3.46 | 0.00 | 0.00 | 3.32 |
5263 | 6554 | 7.112452 | AGTCCAATTACCAAGCCAAAATATC | 57.888 | 36.000 | 0.00 | 0.00 | 0.00 | 1.63 |
5377 | 6669 | 8.500753 | TTTGTTTTGCTTGAGAAGTACTAGAA | 57.499 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
5447 | 6739 | 4.213513 | AGGTGTACACAGTATACTAGGCC | 58.786 | 47.826 | 26.51 | 0.00 | 0.00 | 5.19 |
5840 | 7145 | 5.760253 | GTGGTCATTGATAATCTTGATCCGT | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5842 | 7147 | 5.760253 | ACGTGGTCATTGATAATCTTGATCC | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5847 | 7152 | 7.447374 | TTTCAACGTGGTCATTGATAATCTT | 57.553 | 32.000 | 0.00 | 0.00 | 34.87 | 2.40 |
5917 | 7222 | 6.012508 | GGGGACTTCAATATCATTCATAGGGA | 60.013 | 42.308 | 0.00 | 0.00 | 0.00 | 4.20 |
6073 | 7380 | 4.080299 | AGGAAATCTTTCAGTTCCGGCTAT | 60.080 | 41.667 | 0.00 | 0.00 | 44.64 | 2.97 |
6085 | 7392 | 5.812642 | TCGAAGACAGCATAGGAAATCTTTC | 59.187 | 40.000 | 0.00 | 0.00 | 36.46 | 2.62 |
6386 | 7770 | 0.895100 | TGGCGGCTTCTTTCAAGCAT | 60.895 | 50.000 | 11.43 | 0.00 | 44.71 | 3.79 |
6431 | 7815 | 4.327898 | GTCTATGAAACGATTAACCGCACA | 59.672 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
6482 | 7866 | 3.058224 | CCCGTCTTCAGGTTCAAATCAAC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
6532 | 7916 | 4.038402 | GGAAAAGACATCTATGGGCATTGG | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
6533 | 7917 | 4.891756 | AGGAAAAGACATCTATGGGCATTG | 59.108 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
6534 | 7918 | 4.891756 | CAGGAAAAGACATCTATGGGCATT | 59.108 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
6535 | 7919 | 4.079558 | ACAGGAAAAGACATCTATGGGCAT | 60.080 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
6586 | 7999 | 4.208686 | GACTAGCAGGGGTCGCGG | 62.209 | 72.222 | 6.13 | 0.00 | 0.00 | 6.46 |
6593 | 8006 | 5.336055 | CGATACCAAGAATAGACTAGCAGGG | 60.336 | 48.000 | 0.00 | 0.00 | 0.00 | 4.45 |
6600 | 8013 | 3.243907 | GCCTGCGATACCAAGAATAGACT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
6602 | 8015 | 2.288213 | CGCCTGCGATACCAAGAATAGA | 60.288 | 50.000 | 5.43 | 0.00 | 42.83 | 1.98 |
6626 | 8039 | 1.884926 | GATGAAGAAGGCGCCGAGG | 60.885 | 63.158 | 23.20 | 0.00 | 0.00 | 4.63 |
6630 | 8043 | 1.576356 | CAGTAGATGAAGAAGGCGCC | 58.424 | 55.000 | 21.89 | 21.89 | 0.00 | 6.53 |
6659 | 8148 | 2.128035 | CCGCCGTCATTATCAGAACTC | 58.872 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
6661 | 8150 | 1.593006 | CACCGCCGTCATTATCAGAAC | 59.407 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
6664 | 8153 | 2.154854 | ATCACCGCCGTCATTATCAG | 57.845 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
6674 | 8163 | 1.434555 | TACTGTCAAAATCACCGCCG | 58.565 | 50.000 | 0.00 | 0.00 | 0.00 | 6.46 |
6677 | 8166 | 5.418310 | AGTGTTTACTGTCAAAATCACCG | 57.582 | 39.130 | 0.00 | 0.00 | 35.34 | 4.94 |
6696 | 8185 | 3.125146 | CACCACATACACGATTTCCAGTG | 59.875 | 47.826 | 0.00 | 0.00 | 43.46 | 3.66 |
6697 | 8186 | 3.244422 | ACACCACATACACGATTTCCAGT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
6707 | 8196 | 5.277857 | AGATTAGGCTACACCACATACAC | 57.722 | 43.478 | 0.00 | 0.00 | 43.14 | 2.90 |
6752 | 8244 | 1.837051 | TACCAGGGGCGCCATAGAG | 60.837 | 63.158 | 30.85 | 14.88 | 0.00 | 2.43 |
6755 | 8247 | 3.165685 | GGTACCAGGGGCGCCATA | 61.166 | 66.667 | 30.85 | 9.14 | 0.00 | 2.74 |
6770 | 8262 | 2.775384 | TCCATAACCGAAGCATAAGGGT | 59.225 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
6775 | 8267 | 2.047061 | AGCCTCCATAACCGAAGCATA | 58.953 | 47.619 | 0.00 | 0.00 | 0.00 | 3.14 |
6776 | 8268 | 0.839946 | AGCCTCCATAACCGAAGCAT | 59.160 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
6778 | 8270 | 0.815615 | CCAGCCTCCATAACCGAAGC | 60.816 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6781 | 8273 | 0.758734 | CATCCAGCCTCCATAACCGA | 59.241 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
6793 | 8285 | 0.610174 | TCCTCACACTGACATCCAGC | 59.390 | 55.000 | 0.00 | 0.00 | 46.81 | 4.85 |
6796 | 8288 | 0.603569 | ACGTCCTCACACTGACATCC | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6797 | 8289 | 2.288213 | TGAACGTCCTCACACTGACATC | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6801 | 8293 | 1.000843 | CCATGAACGTCCTCACACTGA | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
6825 | 8549 | 2.496070 | CCGAACATTACCTCCAGACTCA | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6831 | 8555 | 4.829872 | ACATAACCGAACATTACCTCCA | 57.170 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
6833 | 8557 | 4.939439 | ACCAACATAACCGAACATTACCTC | 59.061 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
6834 | 8558 | 4.913784 | ACCAACATAACCGAACATTACCT | 58.086 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
6835 | 8559 | 5.632244 | AACCAACATAACCGAACATTACC | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
6836 | 8560 | 9.706846 | GTATAAACCAACATAACCGAACATTAC | 57.293 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
6837 | 8561 | 9.669887 | AGTATAAACCAACATAACCGAACATTA | 57.330 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
6838 | 8562 | 8.570068 | AGTATAAACCAACATAACCGAACATT | 57.430 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
6839 | 8563 | 9.841295 | ATAGTATAAACCAACATAACCGAACAT | 57.159 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
6840 | 8564 | 9.316730 | GATAGTATAAACCAACATAACCGAACA | 57.683 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
6841 | 8565 | 9.538508 | AGATAGTATAAACCAACATAACCGAAC | 57.461 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
6842 | 8566 | 9.537192 | CAGATAGTATAAACCAACATAACCGAA | 57.463 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
6843 | 8567 | 8.698210 | ACAGATAGTATAAACCAACATAACCGA | 58.302 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
6848 | 8572 | 9.996554 | CCATGACAGATAGTATAAACCAACATA | 57.003 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
6929 | 8671 | 0.984230 | ATCAACCCAAGGAGAAGCGA | 59.016 | 50.000 | 0.00 | 0.00 | 0.00 | 4.93 |
6961 | 8703 | 9.208022 | CCATGTAGTATCAATGATACGTCAAAT | 57.792 | 33.333 | 22.99 | 12.72 | 46.52 | 2.32 |
6968 | 8710 | 9.982651 | ACAGTAACCATGTAGTATCAATGATAC | 57.017 | 33.333 | 22.14 | 22.14 | 43.52 | 2.24 |
6991 | 8738 | 6.866179 | GTACATTTGTACTCCGAACTACAG | 57.134 | 41.667 | 12.51 | 0.00 | 45.47 | 2.74 |
7016 | 8763 | 2.165845 | AGTGTATTGGTACTCCGAGTGC | 59.834 | 50.000 | 11.52 | 9.72 | 36.30 | 4.40 |
7020 | 8767 | 2.421073 | CGACAGTGTATTGGTACTCCGA | 59.579 | 50.000 | 0.00 | 0.00 | 36.30 | 4.55 |
7021 | 8768 | 2.793933 | CGACAGTGTATTGGTACTCCG | 58.206 | 52.381 | 0.00 | 0.00 | 36.30 | 4.63 |
7022 | 8769 | 2.537401 | GCGACAGTGTATTGGTACTCC | 58.463 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
7026 | 8778 | 0.173935 | CCCGCGACAGTGTATTGGTA | 59.826 | 55.000 | 8.23 | 0.00 | 0.00 | 3.25 |
7040 | 8792 | 1.940883 | TAGTACTTGTGCTCCCCGCG | 61.941 | 60.000 | 0.00 | 0.00 | 43.27 | 6.46 |
7045 | 8797 | 4.022242 | TCTGAACTGTAGTACTTGTGCTCC | 60.022 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
7059 | 8811 | 3.871594 | GTGCACTTTGTACTCTGAACTGT | 59.128 | 43.478 | 10.32 | 0.00 | 30.04 | 3.55 |
7128 | 8939 | 2.224426 | TGCTCCCTTCAACAATGTACGT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 3.57 |
7129 | 8940 | 2.159627 | GTGCTCCCTTCAACAATGTACG | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
7161 | 8972 | 6.368779 | AGTTTACTTGCACTTCCCTATGTA | 57.631 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
7163 | 8974 | 6.170506 | TGTAGTTTACTTGCACTTCCCTATG | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
7165 | 8976 | 5.306160 | ACTGTAGTTTACTTGCACTTCCCTA | 59.694 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
7166 | 8977 | 4.102681 | ACTGTAGTTTACTTGCACTTCCCT | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
7167 | 8978 | 4.386711 | ACTGTAGTTTACTTGCACTTCCC | 58.613 | 43.478 | 0.00 | 0.00 | 0.00 | 3.97 |
7168 | 8979 | 6.199393 | CAAACTGTAGTTTACTTGCACTTCC | 58.801 | 40.000 | 9.47 | 0.00 | 45.54 | 3.46 |
7169 | 8980 | 6.037830 | TCCAAACTGTAGTTTACTTGCACTTC | 59.962 | 38.462 | 9.47 | 0.00 | 45.54 | 3.01 |
7219 | 9030 | 5.950965 | TCTTGTAGCGATCTTCGAAATTC | 57.049 | 39.130 | 0.00 | 0.00 | 43.74 | 2.17 |
7296 | 11418 | 5.244851 | TGCTGTGGGCTGATTTATTTTGTTA | 59.755 | 36.000 | 0.00 | 0.00 | 42.39 | 2.41 |
7334 | 11456 | 2.720578 | GCGCGCATAAATGTACGTAGTA | 59.279 | 45.455 | 29.10 | 0.00 | 45.11 | 1.82 |
7336 | 11458 | 1.784856 | AGCGCGCATAAATGTACGTAG | 59.215 | 47.619 | 35.10 | 0.00 | 33.09 | 3.51 |
7337 | 11459 | 1.842720 | AGCGCGCATAAATGTACGTA | 58.157 | 45.000 | 35.10 | 0.00 | 33.09 | 3.57 |
7338 | 11460 | 1.003851 | AAGCGCGCATAAATGTACGT | 58.996 | 45.000 | 35.10 | 4.19 | 33.09 | 3.57 |
7339 | 11461 | 2.914816 | TAAGCGCGCATAAATGTACG | 57.085 | 45.000 | 35.10 | 3.40 | 0.00 | 3.67 |
7340 | 11462 | 6.302313 | CCTTAAATAAGCGCGCATAAATGTAC | 59.698 | 38.462 | 35.10 | 0.00 | 32.02 | 2.90 |
7376 | 11498 | 1.124780 | GAGGGAGGGGAAGAAGTAGC | 58.875 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
7377 | 11499 | 1.693083 | GGGAGGGAGGGGAAGAAGTAG | 60.693 | 61.905 | 0.00 | 0.00 | 0.00 | 2.57 |
7378 | 11500 | 0.342313 | GGGAGGGAGGGGAAGAAGTA | 59.658 | 60.000 | 0.00 | 0.00 | 0.00 | 2.24 |
7391 | 11513 | 2.606519 | TGACGTTGGGAGGGAGGG | 60.607 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
7394 | 11516 | 1.052124 | AGTTGTGACGTTGGGAGGGA | 61.052 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
7395 | 11517 | 0.602905 | GAGTTGTGACGTTGGGAGGG | 60.603 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
7406 | 11536 | 1.658994 | GTGTTGGTTCGGAGTTGTGA | 58.341 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.