Multiple sequence alignment - TraesCS4D01G126600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G126600 chr4D 100.000 7453 0 0 1 7453 111132633 111140085 0.000000e+00 13764.0
1 TraesCS4D01G126600 chr4D 81.600 1000 123 28 2860 3835 324198183 324199145 0.000000e+00 771.0
2 TraesCS4D01G126600 chr4D 90.741 108 8 2 3880 3987 363573823 363573718 7.800000e-30 143.0
3 TraesCS4D01G126600 chr4A 93.030 4907 216 52 1708 6532 465799150 465794288 0.000000e+00 7070.0
4 TraesCS4D01G126600 chr4A 92.264 711 34 3 946 1638 465799883 465799176 0.000000e+00 989.0
5 TraesCS4D01G126600 chr4A 86.018 565 54 18 29 577 465801106 465800551 3.880000e-162 582.0
6 TraesCS4D01G126600 chr4A 90.625 160 10 4 7062 7219 465793394 465793238 2.730000e-49 207.0
7 TraesCS4D01G126600 chr4A 85.567 194 8 8 7268 7452 465790886 465790704 1.280000e-42 185.0
8 TraesCS4D01G126600 chr4A 88.793 116 10 3 3880 3995 147368044 147367932 1.010000e-28 139.0
9 TraesCS4D01G126600 chr4A 87.931 116 11 3 3880 3994 252667305 252667418 4.690000e-27 134.0
10 TraesCS4D01G126600 chr4A 87.288 118 11 3 6538 6653 465794253 465794138 1.690000e-26 132.0
11 TraesCS4D01G126600 chr4A 89.610 77 5 3 853 929 465800010 465799937 2.210000e-15 95.3
12 TraesCS4D01G126600 chr4B 91.292 1780 99 22 4384 6133 172317598 172319351 0.000000e+00 2377.0
13 TraesCS4D01G126600 chr4B 86.530 1908 164 53 33 1905 172313782 172315631 0.000000e+00 2013.0
14 TraesCS4D01G126600 chr4B 87.122 893 44 18 2036 2864 172315760 172316645 0.000000e+00 946.0
15 TraesCS4D01G126600 chr4B 81.287 1197 148 40 2856 3996 404562490 404563666 0.000000e+00 900.0
16 TraesCS4D01G126600 chr4B 96.335 382 12 1 6110 6489 172319399 172319780 1.770000e-175 627.0
17 TraesCS4D01G126600 chr4B 85.476 420 33 22 6805 7217 172320226 172320624 5.380000e-111 412.0
18 TraesCS4D01G126600 chr4B 87.868 272 24 5 3995 4259 172316641 172316910 2.020000e-80 311.0
19 TraesCS4D01G126600 chr4B 86.364 242 16 6 7221 7453 172320662 172320895 1.610000e-61 248.0
20 TraesCS4D01G126600 chr4B 82.222 90 13 3 4009 4096 40030055 40029967 2.880000e-09 75.0
21 TraesCS4D01G126600 chr3D 85.266 1052 96 33 2855 3874 58598109 58599133 0.000000e+00 1029.0
22 TraesCS4D01G126600 chr3D 81.951 820 102 27 2883 3674 546392765 546393566 0.000000e+00 652.0
23 TraesCS4D01G126600 chr3D 87.903 124 14 1 3873 3996 58599167 58599289 2.170000e-30 145.0
24 TraesCS4D01G126600 chr3D 97.436 39 1 0 626 664 586960153 586960115 4.830000e-07 67.6
25 TraesCS4D01G126600 chr3B 81.521 1039 148 25 2860 3874 188228503 188229521 0.000000e+00 815.0
26 TraesCS4D01G126600 chr3B 76.386 1046 188 40 2860 3871 404842701 404843721 6.670000e-140 508.0
27 TraesCS4D01G126600 chr3B 79.550 489 67 16 2859 3333 801292429 801291960 1.210000e-82 318.0
28 TraesCS4D01G126600 chr3B 81.046 153 18 6 1840 1991 806275502 806275360 2.200000e-20 111.0
29 TraesCS4D01G126600 chr3B 90.566 53 5 0 4043 4095 708250412 708250360 3.730000e-08 71.3
30 TraesCS4D01G126600 chr3B 83.784 74 10 2 379 451 19384535 19384607 1.340000e-07 69.4
31 TraesCS4D01G126600 chr2B 81.631 969 111 23 2863 3802 737008988 737008058 0.000000e+00 741.0
32 TraesCS4D01G126600 chr2B 95.000 40 2 0 2135 2174 741219606 741219567 6.240000e-06 63.9
33 TraesCS4D01G126600 chr2B 95.000 40 2 0 2135 2174 741249179 741249140 6.240000e-06 63.9
34 TraesCS4D01G126600 chr1B 79.866 1048 132 49 2862 3874 476345633 476344630 0.000000e+00 693.0
35 TraesCS4D01G126600 chr1B 81.373 510 86 6 3369 3874 340414344 340414848 2.500000e-109 407.0
36 TraesCS4D01G126600 chr1B 78.378 222 33 9 1804 2025 449855637 449855431 6.070000e-26 130.0
37 TraesCS4D01G126600 chr1B 100.000 30 0 0 2770 2799 469148665 469148694 1.000000e-03 56.5
38 TraesCS4D01G126600 chr6B 79.610 1025 142 34 2884 3867 531734098 531733100 0.000000e+00 673.0
39 TraesCS4D01G126600 chr6B 76.990 917 143 33 2975 3865 56002772 56003646 5.270000e-126 462.0
40 TraesCS4D01G126600 chr1D 83.221 739 80 28 2882 3587 354722153 354721426 8.160000e-179 638.0
41 TraesCS4D01G126600 chr1D 80.174 691 103 23 2859 3532 16283971 16284644 3.130000e-133 486.0
42 TraesCS4D01G126600 chr1D 96.970 33 0 1 634 665 68242004 68242036 4.000000e-03 54.7
43 TraesCS4D01G126600 chr3A 81.380 768 114 19 3015 3770 144532057 144532807 3.850000e-167 599.0
44 TraesCS4D01G126600 chr3A 80.729 192 25 6 1801 1990 729322155 729322336 1.010000e-28 139.0
45 TraesCS4D01G126600 chr3A 88.525 61 6 1 4037 4096 671651220 671651160 1.040000e-08 73.1
46 TraesCS4D01G126600 chr6D 82.380 664 96 11 3221 3871 134333610 134334265 6.530000e-155 558.0
47 TraesCS4D01G126600 chr6D 82.282 666 93 13 3221 3871 134738564 134739219 3.040000e-153 553.0
48 TraesCS4D01G126600 chr2D 82.206 281 34 11 2860 3125 512906224 512906503 2.090000e-55 228.0
49 TraesCS4D01G126600 chr2D 81.944 72 9 3 1807 1875 641545479 641545409 2.900000e-04 58.4
50 TraesCS4D01G126600 chr2A 89.103 156 16 1 2861 3015 685647594 685647749 7.630000e-45 193.0
51 TraesCS4D01G126600 chr2A 95.122 41 2 0 2135 2175 739491848 739491808 1.740000e-06 65.8
52 TraesCS4D01G126600 chr7A 80.995 221 32 8 2496 2712 729444605 729444391 4.630000e-37 167.0
53 TraesCS4D01G126600 chr7A 80.543 221 33 7 2496 2712 729491493 729491279 2.150000e-35 161.0
54 TraesCS4D01G126600 chr7D 82.199 191 21 8 2865 3042 477655510 477655320 1.300000e-32 152.0
55 TraesCS4D01G126600 chr7D 81.818 77 14 0 4018 4094 332725721 332725797 1.740000e-06 65.8
56 TraesCS4D01G126600 chr7D 100.000 28 0 0 634 661 133944754 133944727 1.400000e-02 52.8
57 TraesCS4D01G126600 chr6A 89.655 116 10 2 3881 3996 65659146 65659259 6.030000e-31 147.0
58 TraesCS4D01G126600 chr6A 75.000 212 33 11 1801 2003 545316669 545316869 6.200000e-11 80.5
59 TraesCS4D01G126600 chr5A 87.500 120 14 1 3880 3999 429732537 429732419 3.630000e-28 137.0
60 TraesCS4D01G126600 chr5A 87.826 115 13 1 3881 3995 180365538 180365651 4.690000e-27 134.0
61 TraesCS4D01G126600 chr5A 75.549 319 53 19 2433 2743 523427247 523426946 4.690000e-27 134.0
62 TraesCS4D01G126600 chr5A 100.000 30 0 0 632 661 412029245 412029216 1.000000e-03 56.5
63 TraesCS4D01G126600 chr5D 79.882 169 28 6 2579 2743 411512831 411512665 1.310000e-22 119.0
64 TraesCS4D01G126600 chr5D 97.059 34 1 0 635 668 530069318 530069285 2.900000e-04 58.4
65 TraesCS4D01G126600 chr5D 100.000 28 0 0 634 661 317386498 317386471 1.400000e-02 52.8
66 TraesCS4D01G126600 chr1A 100.000 29 0 0 637 665 489238994 489239022 4.000000e-03 54.7
67 TraesCS4D01G126600 chr5B 100.000 28 0 0 641 668 669302396 669302369 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G126600 chr4D 111132633 111140085 7452 False 13764.000000 13764 100.000000 1 7453 1 chr4D.!!$F1 7452
1 TraesCS4D01G126600 chr4D 324198183 324199145 962 False 771.000000 771 81.600000 2860 3835 1 chr4D.!!$F2 975
2 TraesCS4D01G126600 chr4A 465790704 465801106 10402 True 1322.900000 7070 89.200286 29 7452 7 chr4A.!!$R2 7423
3 TraesCS4D01G126600 chr4B 172313782 172320895 7113 False 990.571429 2377 88.712429 33 7453 7 chr4B.!!$F2 7420
4 TraesCS4D01G126600 chr4B 404562490 404563666 1176 False 900.000000 900 81.287000 2856 3996 1 chr4B.!!$F1 1140
5 TraesCS4D01G126600 chr3D 546392765 546393566 801 False 652.000000 652 81.951000 2883 3674 1 chr3D.!!$F1 791
6 TraesCS4D01G126600 chr3D 58598109 58599289 1180 False 587.000000 1029 86.584500 2855 3996 2 chr3D.!!$F2 1141
7 TraesCS4D01G126600 chr3B 188228503 188229521 1018 False 815.000000 815 81.521000 2860 3874 1 chr3B.!!$F2 1014
8 TraesCS4D01G126600 chr3B 404842701 404843721 1020 False 508.000000 508 76.386000 2860 3871 1 chr3B.!!$F3 1011
9 TraesCS4D01G126600 chr2B 737008058 737008988 930 True 741.000000 741 81.631000 2863 3802 1 chr2B.!!$R1 939
10 TraesCS4D01G126600 chr1B 476344630 476345633 1003 True 693.000000 693 79.866000 2862 3874 1 chr1B.!!$R2 1012
11 TraesCS4D01G126600 chr1B 340414344 340414848 504 False 407.000000 407 81.373000 3369 3874 1 chr1B.!!$F1 505
12 TraesCS4D01G126600 chr6B 531733100 531734098 998 True 673.000000 673 79.610000 2884 3867 1 chr6B.!!$R1 983
13 TraesCS4D01G126600 chr6B 56002772 56003646 874 False 462.000000 462 76.990000 2975 3865 1 chr6B.!!$F1 890
14 TraesCS4D01G126600 chr1D 354721426 354722153 727 True 638.000000 638 83.221000 2882 3587 1 chr1D.!!$R1 705
15 TraesCS4D01G126600 chr1D 16283971 16284644 673 False 486.000000 486 80.174000 2859 3532 1 chr1D.!!$F1 673
16 TraesCS4D01G126600 chr3A 144532057 144532807 750 False 599.000000 599 81.380000 3015 3770 1 chr3A.!!$F1 755
17 TraesCS4D01G126600 chr6D 134333610 134334265 655 False 558.000000 558 82.380000 3221 3871 1 chr6D.!!$F1 650
18 TraesCS4D01G126600 chr6D 134738564 134739219 655 False 553.000000 553 82.282000 3221 3871 1 chr6D.!!$F2 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 552 0.454600 CACTGGAGTTCATGCATGCC 59.545 55.000 22.25 16.87 0.00 4.40 F
1712 2087 0.321919 TTCAGCTGTGACTCCATGCC 60.322 55.000 14.67 0.00 30.10 4.40 F
1715 2090 0.330604 AGCTGTGACTCCATGCCATT 59.669 50.000 0.00 0.00 0.00 3.16 F
1853 2248 0.691078 AGTCGGATGTGGCACCCTAT 60.691 55.000 16.26 1.27 0.00 2.57 F
2371 2860 1.068352 ATCCTCCCATACCCCTTGGC 61.068 60.000 0.00 0.00 32.60 4.52 F
3806 4474 1.592939 GCGAGAAATCGAGAGGGGC 60.593 63.158 1.17 0.00 34.64 5.80 F
3874 4550 0.179140 CGCCGCTAACCCGTAGTTAA 60.179 55.000 0.00 0.00 40.43 2.01 F
5235 6524 1.028905 TGCCCAAAAACCGTCTTCAG 58.971 50.000 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 2227 0.180406 AATAGGGTGCCACATCCGAC 59.820 55.000 0.00 0.0 40.09 4.79 R
3409 3996 0.179018 CATCGGGTTGGAGGATTCCC 60.179 60.000 0.00 0.0 43.33 3.97 R
3496 4112 1.000896 ATGCCGGTGAAAAGGGAGG 60.001 57.895 1.90 0.0 0.00 4.30 R
3845 4521 0.588252 GTTAGCGGCGAGTATACGGA 59.412 55.000 12.98 0.0 0.00 4.69 R
3874 4550 2.034532 CCCGGCCCGTAAACCTTT 59.965 61.111 0.85 0.0 0.00 3.11 R
5193 6482 0.040958 CGAAGGCTTGCACAGAACAC 60.041 55.000 3.46 0.0 0.00 3.32 R
5447 6739 4.213513 AGGTGTACACAGTATACTAGGCC 58.786 47.826 26.51 0.0 0.00 5.19 R
7026 8778 0.173935 CCCGCGACAGTGTATTGGTA 59.826 55.000 8.23 0.0 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.335416 CCTGTGTGATTGGGTGACTATTT 58.665 43.478 0.00 0.00 0.00 1.40
60 61 3.763360 TGATTGGGTGACTATTTTGCCTG 59.237 43.478 0.00 0.00 0.00 4.85
70 71 7.367285 GTGACTATTTTGCCTGATTGTGTTAA 58.633 34.615 0.00 0.00 0.00 2.01
100 101 1.680249 GCCTCCTTCGATTCTGCCTTT 60.680 52.381 0.00 0.00 0.00 3.11
115 116 2.158682 TGCCTTTAGTGAGTGGCTCAAA 60.159 45.455 0.00 0.00 42.46 2.69
133 134 5.636543 GCTCAAACATGAAGGAAGGAAATTG 59.363 40.000 0.00 0.00 0.00 2.32
134 135 6.517194 GCTCAAACATGAAGGAAGGAAATTGA 60.517 38.462 0.00 0.00 0.00 2.57
139 140 4.927267 TGAAGGAAGGAAATTGAGCCTA 57.073 40.909 0.00 0.00 33.20 3.93
164 165 2.900546 GCTACTGGCTACCACTATGGAT 59.099 50.000 0.84 0.00 38.33 3.41
193 194 1.705186 AGAAACAAGGGAGCAGCCTAA 59.295 47.619 0.00 0.00 36.66 2.69
226 228 7.309990 CCAATTAAGGCTCCTTTGATTCAAGAA 60.310 37.037 6.47 0.00 37.47 2.52
272 284 2.462723 TGGATCCTTATGTGTCGGTCA 58.537 47.619 14.23 0.00 0.00 4.02
282 294 3.281341 TGTGTCGGTCATTTGATTTGC 57.719 42.857 0.00 0.00 0.00 3.68
283 295 2.620585 TGTGTCGGTCATTTGATTTGCA 59.379 40.909 0.00 0.00 0.00 4.08
285 297 3.609373 GTGTCGGTCATTTGATTTGCATG 59.391 43.478 0.00 0.00 0.00 4.06
286 298 3.505293 TGTCGGTCATTTGATTTGCATGA 59.495 39.130 0.00 0.00 0.00 3.07
291 307 7.275341 GTCGGTCATTTGATTTGCATGATTTAA 59.725 33.333 0.00 0.00 29.78 1.52
300 316 7.849160 TGATTTGCATGATTTAAATCCTTGGA 58.151 30.769 22.42 17.98 39.09 3.53
301 317 7.765360 TGATTTGCATGATTTAAATCCTTGGAC 59.235 33.333 22.42 11.54 39.09 4.02
302 318 5.247507 TGCATGATTTAAATCCTTGGACG 57.752 39.130 22.42 4.96 34.50 4.79
311 327 6.718522 TTAAATCCTTGGACGTTTTTCCTT 57.281 33.333 0.00 0.00 36.51 3.36
312 328 4.584327 AATCCTTGGACGTTTTTCCTTG 57.416 40.909 0.00 0.00 36.51 3.61
319 335 6.016610 CCTTGGACGTTTTTCCTTGAAGATTA 60.017 38.462 0.00 0.00 36.51 1.75
320 336 6.945938 TGGACGTTTTTCCTTGAAGATTAA 57.054 33.333 0.00 0.00 36.51 1.40
330 346 6.515272 TCCTTGAAGATTAATTTGCACTCC 57.485 37.500 0.00 0.00 0.00 3.85
353 369 8.915057 TCCATTTGAAATAAAATTTCCAAGCA 57.085 26.923 9.29 0.00 0.00 3.91
354 370 9.347240 TCCATTTGAAATAAAATTTCCAAGCAA 57.653 25.926 9.29 0.00 0.00 3.91
361 377 9.611284 GAAATAAAATTTCCAAGCAATCAAACC 57.389 29.630 0.00 0.00 0.00 3.27
364 380 5.813513 AATTTCCAAGCAATCAAACCTCT 57.186 34.783 0.00 0.00 0.00 3.69
366 382 5.612725 TTTCCAAGCAATCAAACCTCTTT 57.387 34.783 0.00 0.00 0.00 2.52
453 469 7.042523 CCAACATTTTGAGAATCCTTTGAACAC 60.043 37.037 0.00 0.00 34.24 3.32
457 473 1.128692 GAGAATCCTTTGAACACGCCG 59.871 52.381 0.00 0.00 0.00 6.46
485 502 6.560003 TTTAGCTAGATCAATGTTCCTGGA 57.440 37.500 0.00 0.00 0.00 3.86
535 552 0.454600 CACTGGAGTTCATGCATGCC 59.545 55.000 22.25 16.87 0.00 4.40
536 553 1.028330 ACTGGAGTTCATGCATGCCG 61.028 55.000 22.25 14.32 0.00 5.69
537 554 1.002257 TGGAGTTCATGCATGCCGT 60.002 52.632 22.25 7.98 0.00 5.68
543 560 0.606130 TTCATGCATGCCGTGACACT 60.606 50.000 22.25 0.00 39.14 3.55
562 579 1.300931 GAGCTCGACCACTGCACAA 60.301 57.895 0.00 0.00 0.00 3.33
578 825 3.631145 CACAAGGTGCATATGTATGGC 57.369 47.619 4.29 0.00 34.32 4.40
605 852 9.590451 GAATTCATTCATTGGTCAACACATAAT 57.410 29.630 0.00 0.00 36.80 1.28
669 919 4.344390 GGATCGGAGGGAGTAACATAACTT 59.656 45.833 0.00 0.00 0.00 2.66
671 921 6.294620 GGATCGGAGGGAGTAACATAACTTAG 60.295 46.154 0.00 0.00 0.00 2.18
672 922 4.891756 TCGGAGGGAGTAACATAACTTAGG 59.108 45.833 0.00 0.00 0.00 2.69
732 982 8.657387 TGATGGGTTATATGAAGTTTTTCCAA 57.343 30.769 0.00 0.00 32.09 3.53
737 988 8.527810 GGGTTATATGAAGTTTTTCCAACATGA 58.472 33.333 0.00 0.00 32.09 3.07
738 989 9.353999 GGTTATATGAAGTTTTTCCAACATGAC 57.646 33.333 0.00 0.00 32.09 3.06
801 1053 5.583854 AGATAGCAAGCATGTAACTGTTCTG 59.416 40.000 0.00 0.00 0.00 3.02
825 1078 7.491682 TGCTATAAGATTTTGGGAGCATTTTC 58.508 34.615 0.00 0.00 33.73 2.29
826 1079 7.342799 TGCTATAAGATTTTGGGAGCATTTTCT 59.657 33.333 0.00 0.00 33.73 2.52
827 1080 7.864882 GCTATAAGATTTTGGGAGCATTTTCTC 59.135 37.037 0.00 0.00 0.00 2.87
838 1091 5.451798 GGGAGCATTTTCTCTCTCTCTACAG 60.452 48.000 0.00 0.00 33.70 2.74
929 1257 2.111878 GCCCATGAGACCATCCCG 59.888 66.667 0.00 0.00 0.00 5.14
1075 1403 2.269241 GCTTTCTCCACCCTCCCG 59.731 66.667 0.00 0.00 0.00 5.14
1087 1415 1.627297 CCCTCCCGGAAAGCTTAGCT 61.627 60.000 0.73 0.00 42.56 3.32
1269 1597 6.704310 TCGTAATAAGGACAATAATAGGGCC 58.296 40.000 0.00 0.00 0.00 5.80
1278 1606 0.542232 ATAATAGGGCCGACGGAGCT 60.542 55.000 20.50 0.00 0.00 4.09
1374 1720 0.545548 AGGAGGAGGAGGACAACCAC 60.546 60.000 0.00 0.00 38.94 4.16
1556 1902 0.682209 AATTACTGCAGCCAGCCAGG 60.682 55.000 15.27 0.00 43.02 4.45
1568 1914 1.386533 CAGCCAGGAATTAGTGCAGG 58.613 55.000 0.00 0.00 0.00 4.85
1612 1958 3.436704 TGTGATCCTGCAGTTCGAATTTC 59.563 43.478 13.81 0.00 0.00 2.17
1620 1966 1.732259 CAGTTCGAATTTCGGTCCAGG 59.268 52.381 18.02 1.27 40.88 4.45
1627 1973 1.295020 ATTTCGGTCCAGGATTGGGA 58.705 50.000 0.00 0.00 45.10 4.37
1638 1990 2.305927 CAGGATTGGGACTTGTAGTGGT 59.694 50.000 0.00 0.00 0.00 4.16
1640 1992 2.304761 GGATTGGGACTTGTAGTGGTCA 59.695 50.000 0.00 0.00 34.49 4.02
1642 1994 2.097110 TGGGACTTGTAGTGGTCACT 57.903 50.000 8.74 8.74 45.02 3.41
1643 1995 1.691976 TGGGACTTGTAGTGGTCACTG 59.308 52.381 13.32 0.00 42.52 3.66
1644 1996 1.608283 GGGACTTGTAGTGGTCACTGC 60.608 57.143 13.32 12.31 42.52 4.40
1645 1997 1.608283 GGACTTGTAGTGGTCACTGCC 60.608 57.143 13.32 5.07 42.33 4.85
1646 1998 0.396811 ACTTGTAGTGGTCACTGCCC 59.603 55.000 13.32 2.87 42.33 5.36
1648 2000 1.003580 CTTGTAGTGGTCACTGCCCAT 59.996 52.381 13.32 0.00 42.33 4.00
1649 2001 1.064003 TGTAGTGGTCACTGCCCATT 58.936 50.000 13.32 0.00 42.33 3.16
1650 2002 1.271325 TGTAGTGGTCACTGCCCATTG 60.271 52.381 13.32 0.00 42.33 2.82
1651 2003 0.327924 TAGTGGTCACTGCCCATTGG 59.672 55.000 13.32 0.00 42.52 3.16
1652 2004 1.074775 GTGGTCACTGCCCATTGGA 59.925 57.895 3.62 0.00 33.76 3.53
1653 2005 1.074775 TGGTCACTGCCCATTGGAC 59.925 57.895 3.62 0.00 0.00 4.02
1654 2006 2.040544 GGTCACTGCCCATTGGACG 61.041 63.158 3.62 0.00 0.00 4.79
1655 2007 2.359850 TCACTGCCCATTGGACGC 60.360 61.111 3.62 0.11 0.00 5.19
1656 2008 2.672651 CACTGCCCATTGGACGCA 60.673 61.111 3.62 5.35 0.00 5.24
1657 2009 2.048023 CACTGCCCATTGGACGCAT 61.048 57.895 3.62 0.00 0.00 4.73
1658 2010 2.048023 ACTGCCCATTGGACGCATG 61.048 57.895 3.62 3.60 0.00 4.06
1659 2011 2.035469 TGCCCATTGGACGCATGT 59.965 55.556 3.62 0.00 0.00 3.21
1660 2012 1.597797 CTGCCCATTGGACGCATGTT 61.598 55.000 3.62 0.00 0.00 2.71
1661 2013 0.322906 TGCCCATTGGACGCATGTTA 60.323 50.000 3.62 0.00 0.00 2.41
1662 2014 0.814457 GCCCATTGGACGCATGTTAA 59.186 50.000 3.62 0.00 0.00 2.01
1663 2015 1.202290 GCCCATTGGACGCATGTTAAG 60.202 52.381 3.62 0.00 0.00 1.85
1664 2016 2.091541 CCCATTGGACGCATGTTAAGT 58.908 47.619 3.62 0.00 0.00 2.24
1665 2017 3.275143 CCCATTGGACGCATGTTAAGTA 58.725 45.455 3.62 0.00 0.00 2.24
1666 2018 3.312421 CCCATTGGACGCATGTTAAGTAG 59.688 47.826 3.62 0.00 0.00 2.57
1667 2019 3.312421 CCATTGGACGCATGTTAAGTAGG 59.688 47.826 0.00 0.00 0.00 3.18
1668 2020 3.965379 TTGGACGCATGTTAAGTAGGA 57.035 42.857 0.00 0.00 0.00 2.94
1669 2021 3.520290 TGGACGCATGTTAAGTAGGAG 57.480 47.619 0.00 0.00 0.00 3.69
1670 2022 2.829720 TGGACGCATGTTAAGTAGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
1671 2023 4.018490 TGGACGCATGTTAAGTAGGAGTA 58.982 43.478 0.00 0.00 0.00 2.59
1672 2024 4.647853 TGGACGCATGTTAAGTAGGAGTAT 59.352 41.667 0.00 0.00 0.00 2.12
1673 2025 5.128171 TGGACGCATGTTAAGTAGGAGTATT 59.872 40.000 0.00 0.00 0.00 1.89
1674 2026 6.047231 GGACGCATGTTAAGTAGGAGTATTT 58.953 40.000 0.00 0.00 0.00 1.40
1697 2072 9.850628 ATTTGAGTGTTTCATTATCATGTTCAG 57.149 29.630 0.00 0.00 35.27 3.02
1698 2073 6.845302 TGAGTGTTTCATTATCATGTTCAGC 58.155 36.000 0.00 0.00 0.00 4.26
1700 2075 6.849502 AGTGTTTCATTATCATGTTCAGCTG 58.150 36.000 7.63 7.63 0.00 4.24
1703 2078 6.430616 TGTTTCATTATCATGTTCAGCTGTGA 59.569 34.615 14.67 10.47 0.00 3.58
1704 2079 6.426980 TTCATTATCATGTTCAGCTGTGAC 57.573 37.500 14.67 14.04 30.10 3.67
1705 2080 5.737860 TCATTATCATGTTCAGCTGTGACT 58.262 37.500 14.67 3.48 30.10 3.41
1706 2081 5.814188 TCATTATCATGTTCAGCTGTGACTC 59.186 40.000 14.67 1.90 30.10 3.36
1707 2082 2.462456 TCATGTTCAGCTGTGACTCC 57.538 50.000 14.67 0.00 30.10 3.85
1708 2083 1.693606 TCATGTTCAGCTGTGACTCCA 59.306 47.619 14.67 3.16 30.10 3.86
1709 2084 2.303890 TCATGTTCAGCTGTGACTCCAT 59.696 45.455 14.67 5.33 30.10 3.41
1710 2085 2.174363 TGTTCAGCTGTGACTCCATG 57.826 50.000 14.67 0.00 30.10 3.66
1711 2086 0.801251 GTTCAGCTGTGACTCCATGC 59.199 55.000 14.67 0.00 30.10 4.06
1712 2087 0.321919 TTCAGCTGTGACTCCATGCC 60.322 55.000 14.67 0.00 30.10 4.40
1713 2088 1.002990 CAGCTGTGACTCCATGCCA 60.003 57.895 5.25 0.00 0.00 4.92
1714 2089 0.393944 CAGCTGTGACTCCATGCCAT 60.394 55.000 5.25 0.00 0.00 4.40
1715 2090 0.330604 AGCTGTGACTCCATGCCATT 59.669 50.000 0.00 0.00 0.00 3.16
1716 2091 1.180029 GCTGTGACTCCATGCCATTT 58.820 50.000 0.00 0.00 0.00 2.32
1717 2092 1.547372 GCTGTGACTCCATGCCATTTT 59.453 47.619 0.00 0.00 0.00 1.82
1718 2093 2.416431 GCTGTGACTCCATGCCATTTTC 60.416 50.000 0.00 0.00 0.00 2.29
1719 2094 3.087031 CTGTGACTCCATGCCATTTTCT 58.913 45.455 0.00 0.00 0.00 2.52
1720 2095 2.821378 TGTGACTCCATGCCATTTTCTG 59.179 45.455 0.00 0.00 0.00 3.02
1721 2096 1.820519 TGACTCCATGCCATTTTCTGC 59.179 47.619 0.00 0.00 0.00 4.26
1722 2097 2.097825 GACTCCATGCCATTTTCTGCT 58.902 47.619 0.00 0.00 0.00 4.24
1723 2098 2.494870 GACTCCATGCCATTTTCTGCTT 59.505 45.455 0.00 0.00 0.00 3.91
1724 2099 3.696051 GACTCCATGCCATTTTCTGCTTA 59.304 43.478 0.00 0.00 0.00 3.09
1725 2100 4.088634 ACTCCATGCCATTTTCTGCTTAA 58.911 39.130 0.00 0.00 0.00 1.85
1726 2101 4.527816 ACTCCATGCCATTTTCTGCTTAAA 59.472 37.500 0.00 0.00 0.00 1.52
1727 2102 5.011943 ACTCCATGCCATTTTCTGCTTAAAA 59.988 36.000 0.00 0.31 33.15 1.52
1728 2103 5.481105 TCCATGCCATTTTCTGCTTAAAAG 58.519 37.500 0.00 0.00 32.20 2.27
1732 2107 7.255208 CCATGCCATTTTCTGCTTAAAAGTTTT 60.255 33.333 6.06 6.06 32.20 2.43
1757 2132 2.767960 CCCTTGCTATTTCTTTGGGCAT 59.232 45.455 0.00 0.00 32.87 4.40
1772 2147 2.284190 GGGCATTAGAAGCTCACAGTC 58.716 52.381 0.00 0.00 31.20 3.51
1792 2167 4.532521 AGTCTGACTTGTATTGTTAGGGCT 59.467 41.667 4.06 0.00 0.00 5.19
1796 2171 3.939592 GACTTGTATTGTTAGGGCTGTCC 59.060 47.826 0.00 0.00 0.00 4.02
1835 2227 8.498054 TCTTAATCATGAGACCTAAGCAAAAG 57.502 34.615 0.09 0.00 0.00 2.27
1838 2230 4.245660 TCATGAGACCTAAGCAAAAGTCG 58.754 43.478 0.00 0.00 34.41 4.18
1850 2242 0.893727 AAAAGTCGGATGTGGCACCC 60.894 55.000 16.26 9.07 0.00 4.61
1853 2248 0.691078 AGTCGGATGTGGCACCCTAT 60.691 55.000 16.26 1.27 0.00 2.57
1861 2256 2.980568 TGTGGCACCCTATTTAACGAG 58.019 47.619 16.26 0.00 0.00 4.18
1880 2275 4.158764 ACGAGGAAAGAGAGAGTTACCATG 59.841 45.833 0.00 0.00 0.00 3.66
1888 2283 9.308318 GAAAGAGAGAGTTACCATGTCTTAATC 57.692 37.037 0.00 0.00 0.00 1.75
1917 2312 3.295973 AGCTCTTAGCACCAAAACCAAA 58.704 40.909 1.22 0.00 45.56 3.28
1918 2313 3.704061 AGCTCTTAGCACCAAAACCAAAA 59.296 39.130 1.22 0.00 45.56 2.44
1919 2314 3.802139 GCTCTTAGCACCAAAACCAAAAC 59.198 43.478 0.00 0.00 41.89 2.43
1920 2315 4.368315 CTCTTAGCACCAAAACCAAAACC 58.632 43.478 0.00 0.00 0.00 3.27
1921 2316 3.769844 TCTTAGCACCAAAACCAAAACCA 59.230 39.130 0.00 0.00 0.00 3.67
1922 2317 2.689553 AGCACCAAAACCAAAACCAG 57.310 45.000 0.00 0.00 0.00 4.00
1927 2322 2.499693 ACCAAAACCAAAACCAGGACAG 59.500 45.455 0.00 0.00 0.00 3.51
1939 2334 3.679389 ACCAGGACAGCTCATACTTTTG 58.321 45.455 0.00 0.00 0.00 2.44
1942 2337 3.373439 CAGGACAGCTCATACTTTTGCTC 59.627 47.826 0.00 0.00 33.03 4.26
1945 2340 4.248859 GACAGCTCATACTTTTGCTCTCA 58.751 43.478 0.00 0.00 33.03 3.27
1946 2341 3.999663 ACAGCTCATACTTTTGCTCTCAC 59.000 43.478 0.00 0.00 33.03 3.51
1947 2342 3.999001 CAGCTCATACTTTTGCTCTCACA 59.001 43.478 0.00 0.00 33.03 3.58
1948 2343 4.453478 CAGCTCATACTTTTGCTCTCACAA 59.547 41.667 0.00 0.00 33.03 3.33
1949 2344 5.049198 CAGCTCATACTTTTGCTCTCACAAA 60.049 40.000 0.00 0.00 37.74 2.83
1957 2352 5.405269 ACTTTTGCTCTCACAAACAAAACAC 59.595 36.000 0.00 0.00 39.18 3.32
1967 2362 9.645059 TCTCACAAACAAAACACATTAAATGAA 57.355 25.926 0.00 0.00 0.00 2.57
2025 2420 8.099537 CCATTGGATGAGCAATATCTAAGTACT 58.900 37.037 0.00 0.00 30.24 2.73
2063 2530 9.925545 TGATATGGCTTAGGATATAATGCATTT 57.074 29.630 18.75 8.19 0.00 2.32
2066 2533 5.185635 TGGCTTAGGATATAATGCATTTGGC 59.814 40.000 18.75 7.37 45.13 4.52
2093 2560 1.206878 TAGTGCTGATGAGGGCATGT 58.793 50.000 0.00 0.00 40.66 3.21
2109 2576 5.951747 AGGGCATGTACAATAGTTGTTGATT 59.048 36.000 0.00 0.00 42.22 2.57
2133 2600 8.718102 TTAGATAGTATTTCTGTGCCTTTCAC 57.282 34.615 0.00 0.00 45.82 3.18
2258 2747 6.377327 AAAAGTTATCATATCCTGGTTGCG 57.623 37.500 0.00 0.00 0.00 4.85
2350 2839 8.093927 GGTCAAATCTTGGATCCTCTCTATAAG 58.906 40.741 14.23 6.36 0.00 1.73
2371 2860 1.068352 ATCCTCCCATACCCCTTGGC 61.068 60.000 0.00 0.00 32.60 4.52
2654 3157 4.771590 TTCATGAGGTGCTTTGATTGAC 57.228 40.909 0.00 0.00 0.00 3.18
2723 3236 2.182842 GGATGGTGTGCGCATCCTC 61.183 63.158 26.50 21.26 38.40 3.71
2758 3271 5.879223 AGTCACTTGAGAGCCTATCATTTTG 59.121 40.000 0.00 0.00 0.00 2.44
2765 3278 6.057533 TGAGAGCCTATCATTTTGTACATGG 58.942 40.000 0.00 0.00 0.00 3.66
2766 3279 6.006275 AGAGCCTATCATTTTGTACATGGT 57.994 37.500 0.00 0.00 0.00 3.55
2955 3494 2.256461 GCTGAAAACAGCCTGGCG 59.744 61.111 13.96 10.87 42.05 5.69
3269 3852 4.158949 TCCAAATTATCGTCGAACTCCTGA 59.841 41.667 0.00 0.00 0.00 3.86
3683 4349 4.246206 TCGCGCCGTCGACTATGG 62.246 66.667 14.70 8.82 38.10 2.74
3806 4474 1.592939 GCGAGAAATCGAGAGGGGC 60.593 63.158 1.17 0.00 34.64 5.80
3845 4521 3.056754 GCGGGGATAGGGTTTGGCT 62.057 63.158 0.00 0.00 0.00 4.75
3861 4537 2.905807 GCTCCGTATACTCGCCGCT 61.906 63.158 0.56 0.00 0.00 5.52
3874 4550 0.179140 CGCCGCTAACCCGTAGTTAA 60.179 55.000 0.00 0.00 40.43 2.01
3876 4552 2.345876 GCCGCTAACCCGTAGTTAAAA 58.654 47.619 0.00 0.00 40.43 1.52
3877 4553 2.349580 GCCGCTAACCCGTAGTTAAAAG 59.650 50.000 0.00 0.00 40.43 2.27
3879 4555 3.588955 CGCTAACCCGTAGTTAAAAGGT 58.411 45.455 0.00 0.00 40.43 3.50
3880 4556 3.996363 CGCTAACCCGTAGTTAAAAGGTT 59.004 43.478 0.00 0.00 40.43 3.50
3881 4557 4.452114 CGCTAACCCGTAGTTAAAAGGTTT 59.548 41.667 0.00 0.00 40.43 3.27
3882 4558 5.637387 CGCTAACCCGTAGTTAAAAGGTTTA 59.363 40.000 0.00 0.00 40.43 2.01
3883 4559 6.401047 CGCTAACCCGTAGTTAAAAGGTTTAC 60.401 42.308 0.00 0.00 40.43 2.01
3954 4665 1.415374 CCGTATAGTCGCCGGATTTG 58.585 55.000 5.05 0.00 44.41 2.32
4004 4715 2.173126 AGAGATGCTCTTAGTGGGCT 57.827 50.000 0.00 0.00 37.60 5.19
4014 4725 1.822990 CTTAGTGGGCTACTCAACCGA 59.177 52.381 6.84 0.00 40.89 4.69
4120 4831 1.202348 ACATGATCGCGTCAAGAGTGA 59.798 47.619 16.68 0.00 40.97 3.41
4160 4871 6.321821 ACCATACCTCCTAATTAGTTGCAA 57.678 37.500 11.50 0.00 0.00 4.08
4462 5744 7.600065 TCAGTACAACAGAAACTGTATCTACC 58.400 38.462 4.84 0.00 44.62 3.18
4742 6024 5.187967 GGTAACTCCCTATCCATACCTGATG 59.812 48.000 0.00 0.00 32.06 3.07
4982 6271 7.086685 TCCTGGTAGAAATTTTACAGTCCTT 57.913 36.000 0.00 0.00 0.00 3.36
5032 6321 6.884280 AGGGCAATCAGTTTATATGTTAGC 57.116 37.500 0.00 0.00 0.00 3.09
5053 6342 2.958355 CCAAGTTGTGATGGGACTGTTT 59.042 45.455 1.45 0.00 32.87 2.83
5059 6348 4.286297 TGTGATGGGACTGTTTAGGAAG 57.714 45.455 0.00 0.00 0.00 3.46
5126 6415 9.671279 TGTGAAATACAATCATGAGATAGTTGT 57.329 29.630 14.29 14.29 36.06 3.32
5173 6462 9.863845 TGTGAGATCAAGTATGTTTTTATCGTA 57.136 29.630 0.00 0.00 0.00 3.43
5193 6482 6.491394 TCGTAAACTTTGAAGTGGAAATGTG 58.509 36.000 0.00 0.00 39.66 3.21
5235 6524 1.028905 TGCCCAAAAACCGTCTTCAG 58.971 50.000 0.00 0.00 0.00 3.02
5263 6554 9.410556 CATTTTACCTGACATTTCTTTAACTGG 57.589 33.333 0.00 0.00 0.00 4.00
5377 6669 6.721208 CCCCAGCCTGTACATCAATTATAAAT 59.279 38.462 0.00 0.00 0.00 1.40
5447 6739 6.442952 TCACCGGAAACTCAAAAATTACATG 58.557 36.000 9.46 0.00 0.00 3.21
5529 6822 0.664224 ACCTTGTAAAAACCGGCGTG 59.336 50.000 6.01 0.00 0.00 5.34
5555 6859 3.250744 GTTCGATTGACGTGAATCCTCA 58.749 45.455 19.96 3.78 43.13 3.86
5629 6934 3.686726 CAGCCAACCTAGCTCAAACTTAG 59.313 47.826 0.00 0.00 38.95 2.18
5840 7145 3.114606 TCCCTGCCAAATCTATCTCACA 58.885 45.455 0.00 0.00 0.00 3.58
5842 7147 2.868583 CCTGCCAAATCTATCTCACACG 59.131 50.000 0.00 0.00 0.00 4.49
5847 7152 4.740634 GCCAAATCTATCTCACACGGATCA 60.741 45.833 0.00 0.00 0.00 2.92
5944 7249 7.408543 CCTATGAATGATATTGAAGTCCCCAT 58.591 38.462 0.00 0.00 0.00 4.00
6073 7380 9.087871 TCCATTCAAAACCATCTCTTTATTTCA 57.912 29.630 0.00 0.00 0.00 2.69
6085 7392 6.049149 TCTCTTTATTTCATAGCCGGAACTG 58.951 40.000 5.05 0.00 0.00 3.16
6344 7726 4.573607 GTGATTGCTGATCTGATTAGTGCA 59.426 41.667 10.64 7.31 35.69 4.57
6386 7770 2.824341 GTCTCGGAAGGACAGGAACTTA 59.176 50.000 0.00 0.00 34.60 2.24
6404 7788 1.094785 TATGCTTGAAAGAAGCCGCC 58.905 50.000 4.05 0.00 42.36 6.13
6431 7815 1.531748 CCAGTACATGGGGCGGATT 59.468 57.895 0.00 0.00 46.36 3.01
6482 7866 3.450457 ACCAATCTCTCTACAGGCTTCAG 59.550 47.826 0.00 0.00 0.00 3.02
6505 7889 2.084546 GATTTGAACCTGAAGACGGGG 58.915 52.381 0.00 0.00 46.20 5.73
6507 7891 0.685097 TTGAACCTGAAGACGGGGAG 59.315 55.000 0.00 0.00 46.20 4.30
6532 7916 4.684877 GCTAGAGGCTTAGTGTAGTTTCC 58.315 47.826 0.00 0.00 38.06 3.13
6533 7917 4.441773 GCTAGAGGCTTAGTGTAGTTTCCC 60.442 50.000 0.00 0.00 38.06 3.97
6534 7918 3.517612 AGAGGCTTAGTGTAGTTTCCCA 58.482 45.455 0.00 0.00 0.00 4.37
6535 7919 3.908103 AGAGGCTTAGTGTAGTTTCCCAA 59.092 43.478 0.00 0.00 0.00 4.12
6573 7986 2.392662 TCCTGTTAGAGATGGAGCTGG 58.607 52.381 0.00 0.00 0.00 4.85
6579 7992 1.040339 AGAGATGGAGCTGGTCGACC 61.040 60.000 28.17 28.17 0.00 4.79
6581 7994 1.040339 AGATGGAGCTGGTCGACCTC 61.040 60.000 33.39 22.71 36.82 3.85
6586 7999 2.183046 GCTGGTCGACCTCTGCTC 59.817 66.667 33.39 13.09 36.82 4.26
6593 8006 4.500116 GACCTCTGCTCCGCGACC 62.500 72.222 8.23 0.00 0.00 4.79
6602 8015 4.753662 TCCGCGACCCCTGCTAGT 62.754 66.667 8.23 0.00 0.00 2.57
6614 8027 4.223953 CCCCTGCTAGTCTATTCTTGGTA 58.776 47.826 0.00 0.00 0.00 3.25
6615 8028 4.841246 CCCCTGCTAGTCTATTCTTGGTAT 59.159 45.833 0.00 0.00 0.00 2.73
6617 8030 5.336055 CCCTGCTAGTCTATTCTTGGTATCG 60.336 48.000 0.00 0.00 0.00 2.92
6619 8032 4.583073 TGCTAGTCTATTCTTGGTATCGCA 59.417 41.667 0.00 0.00 0.00 5.10
6622 8035 3.060602 GTCTATTCTTGGTATCGCAGGC 58.939 50.000 0.00 0.00 0.00 4.85
6624 8037 0.178068 ATTCTTGGTATCGCAGGCGT 59.822 50.000 13.83 3.96 40.74 5.68
6625 8038 0.739462 TTCTTGGTATCGCAGGCGTG 60.739 55.000 13.83 1.01 40.74 5.34
6674 8163 5.290643 GCACTCAGTGAGTTCTGATAATGAC 59.709 44.000 23.33 2.48 41.37 3.06
6677 8166 3.553511 CAGTGAGTTCTGATAATGACGGC 59.446 47.826 0.00 0.00 37.61 5.68
6689 8178 0.802494 ATGACGGCGGTGATTTTGAC 59.198 50.000 13.24 0.00 0.00 3.18
6690 8179 0.533085 TGACGGCGGTGATTTTGACA 60.533 50.000 13.24 0.00 0.00 3.58
6696 8185 3.561503 GGCGGTGATTTTGACAGTAAAC 58.438 45.455 0.00 0.00 0.00 2.01
6697 8186 3.003897 GGCGGTGATTTTGACAGTAAACA 59.996 43.478 0.00 0.00 0.00 2.83
6707 8196 5.666969 TTGACAGTAAACACTGGAAATCG 57.333 39.130 9.42 0.00 41.76 3.34
6746 8238 5.425539 CCTAATCTAGGTCAAAGGAGTGGAA 59.574 44.000 0.00 0.00 41.18 3.53
6770 8262 1.837051 CTCTATGGCGCCCCTGGTA 60.837 63.158 26.77 3.54 0.00 3.25
6776 8268 3.085296 GCGCCCCTGGTACCCTTA 61.085 66.667 10.07 0.00 0.00 2.69
6778 8270 1.450211 CGCCCCTGGTACCCTTATG 59.550 63.158 10.07 0.00 0.00 1.90
6781 8273 1.222567 CCCCTGGTACCCTTATGCTT 58.777 55.000 10.07 0.00 0.00 3.91
6793 8285 3.403038 CCTTATGCTTCGGTTATGGAGG 58.597 50.000 0.00 0.00 0.00 4.30
6796 8288 0.107703 TGCTTCGGTTATGGAGGCTG 60.108 55.000 0.00 0.00 37.40 4.85
6797 8289 0.815615 GCTTCGGTTATGGAGGCTGG 60.816 60.000 0.00 0.00 34.09 4.85
6801 8293 0.469917 CGGTTATGGAGGCTGGATGT 59.530 55.000 0.00 0.00 0.00 3.06
6825 8549 3.706594 AGTGTGAGGACGTTCATGGATAT 59.293 43.478 0.00 0.00 0.00 1.63
6831 8555 4.219115 AGGACGTTCATGGATATGAGTCT 58.781 43.478 0.00 0.00 43.76 3.24
6833 8557 4.302455 GACGTTCATGGATATGAGTCTGG 58.698 47.826 0.00 0.00 43.76 3.86
6834 8558 3.960755 ACGTTCATGGATATGAGTCTGGA 59.039 43.478 0.00 0.00 43.76 3.86
6835 8559 4.038522 ACGTTCATGGATATGAGTCTGGAG 59.961 45.833 0.00 0.00 43.76 3.86
6836 8560 4.560311 CGTTCATGGATATGAGTCTGGAGG 60.560 50.000 0.00 0.00 43.76 4.30
6837 8561 4.204792 TCATGGATATGAGTCTGGAGGT 57.795 45.455 0.00 0.00 38.37 3.85
6838 8562 5.339423 TCATGGATATGAGTCTGGAGGTA 57.661 43.478 0.00 0.00 38.37 3.08
6839 8563 5.715921 TCATGGATATGAGTCTGGAGGTAA 58.284 41.667 0.00 0.00 38.37 2.85
6840 8564 6.326161 TCATGGATATGAGTCTGGAGGTAAT 58.674 40.000 0.00 0.00 38.37 1.89
6841 8565 6.212187 TCATGGATATGAGTCTGGAGGTAATG 59.788 42.308 0.00 0.00 38.37 1.90
6842 8566 5.467738 TGGATATGAGTCTGGAGGTAATGT 58.532 41.667 0.00 0.00 0.00 2.71
6843 8567 5.905331 TGGATATGAGTCTGGAGGTAATGTT 59.095 40.000 0.00 0.00 0.00 2.71
6848 8572 2.904434 AGTCTGGAGGTAATGTTCGGTT 59.096 45.455 0.00 0.00 0.00 4.44
6866 8590 9.316730 TGTTCGGTTATGTTGGTTTATACTATC 57.683 33.333 0.00 0.00 0.00 2.08
6909 8651 5.276461 TGTAGTGCTCTCTTGACAGAAAA 57.724 39.130 0.00 0.00 0.00 2.29
6910 8652 5.292765 TGTAGTGCTCTCTTGACAGAAAAG 58.707 41.667 0.00 0.00 0.00 2.27
6911 8653 4.414337 AGTGCTCTCTTGACAGAAAAGT 57.586 40.909 0.00 0.00 0.00 2.66
6912 8654 4.376146 AGTGCTCTCTTGACAGAAAAGTC 58.624 43.478 0.00 0.00 38.99 3.01
6913 8655 4.100808 AGTGCTCTCTTGACAGAAAAGTCT 59.899 41.667 0.00 0.00 39.27 3.24
6915 8657 3.993736 GCTCTCTTGACAGAAAAGTCTCC 59.006 47.826 0.00 0.00 39.27 3.71
6916 8658 4.262420 GCTCTCTTGACAGAAAAGTCTCCT 60.262 45.833 0.00 0.00 39.27 3.69
6917 8659 5.461032 TCTCTTGACAGAAAAGTCTCCTC 57.539 43.478 0.00 0.00 39.27 3.71
6918 8660 4.022762 TCTCTTGACAGAAAAGTCTCCTCG 60.023 45.833 0.00 0.00 39.27 4.63
6929 8671 2.754658 CTCCTCGGTAGGCGGTGT 60.755 66.667 0.00 0.00 43.31 4.16
6957 8699 3.750371 TCCTTGGGTTGATGTGTTGTAG 58.250 45.455 0.00 0.00 0.00 2.74
6958 8700 3.392947 TCCTTGGGTTGATGTGTTGTAGA 59.607 43.478 0.00 0.00 0.00 2.59
6960 8702 5.249622 TCCTTGGGTTGATGTGTTGTAGATA 59.750 40.000 0.00 0.00 0.00 1.98
6961 8703 5.943416 CCTTGGGTTGATGTGTTGTAGATAA 59.057 40.000 0.00 0.00 0.00 1.75
6968 8710 7.692291 GGTTGATGTGTTGTAGATAATTTGACG 59.308 37.037 0.00 0.00 0.00 4.35
6969 8711 7.899178 TGATGTGTTGTAGATAATTTGACGT 57.101 32.000 0.00 0.00 0.00 4.34
6991 8738 9.125906 GACGTATCATTGATACTACATGGTTAC 57.874 37.037 26.34 6.51 41.71 2.50
7004 8751 3.830755 ACATGGTTACTGTAGTTCGGAGT 59.169 43.478 0.00 0.00 0.00 3.85
7040 8792 3.442977 ACTCGGAGTACCAATACACTGTC 59.557 47.826 9.33 0.00 33.30 3.51
7045 8797 0.173935 TACCAATACACTGTCGCGGG 59.826 55.000 6.13 0.00 0.00 6.13
7128 8939 6.173427 ACTAACGTTGGGGAGTAAAAAGTA 57.827 37.500 16.48 0.00 0.00 2.24
7129 8940 5.991606 ACTAACGTTGGGGAGTAAAAAGTAC 59.008 40.000 16.48 0.00 0.00 2.73
7152 8963 2.233271 ACATTGTTGAAGGGAGCACAG 58.767 47.619 0.00 0.00 0.00 3.66
7219 9030 4.696455 ACAACTTGCCCTCAGAATTTTTG 58.304 39.130 0.00 0.00 0.00 2.44
7233 9081 8.659569 TCAGAATTTTTGAATTTCGAAGATCG 57.340 30.769 0.00 0.00 42.10 3.69
7235 9083 7.272084 CAGAATTTTTGAATTTCGAAGATCGCT 59.728 33.333 0.00 2.74 40.21 4.93
7242 9090 6.042777 TGAATTTCGAAGATCGCTACAAGAT 58.957 36.000 0.00 0.00 40.21 2.40
7334 11456 2.430465 CACAGCAATGTCAACCTAGCT 58.570 47.619 0.00 0.00 0.00 3.32
7335 11457 3.599343 CACAGCAATGTCAACCTAGCTA 58.401 45.455 0.00 0.00 0.00 3.32
7336 11458 3.372206 CACAGCAATGTCAACCTAGCTAC 59.628 47.826 0.00 0.00 0.00 3.58
7337 11459 3.261897 ACAGCAATGTCAACCTAGCTACT 59.738 43.478 0.00 0.00 0.00 2.57
7338 11460 4.466370 ACAGCAATGTCAACCTAGCTACTA 59.534 41.667 0.00 0.00 0.00 1.82
7339 11461 4.806247 CAGCAATGTCAACCTAGCTACTAC 59.194 45.833 0.00 0.00 0.00 2.73
7340 11462 3.797256 GCAATGTCAACCTAGCTACTACG 59.203 47.826 0.00 0.00 0.00 3.51
7376 11498 2.435372 TATTTAAGGCCACCCTGCTG 57.565 50.000 5.01 0.00 41.90 4.41
7377 11499 0.972471 ATTTAAGGCCACCCTGCTGC 60.972 55.000 5.01 0.00 41.90 5.25
7378 11500 2.080336 TTTAAGGCCACCCTGCTGCT 62.080 55.000 5.01 0.00 41.90 4.24
7391 11513 0.905357 TGCTGCTACTTCTTCCCCTC 59.095 55.000 0.00 0.00 0.00 4.30
7394 11516 0.417841 TGCTACTTCTTCCCCTCCCT 59.582 55.000 0.00 0.00 0.00 4.20
7395 11517 1.124780 GCTACTTCTTCCCCTCCCTC 58.875 60.000 0.00 0.00 0.00 4.30
7406 11536 2.284699 CTCCCTCCCTCCCAACGT 60.285 66.667 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.734620 CGTGTAATGTATCCAAAATTTCATGAT 57.265 29.630 0.00 0.00 0.00 2.45
8 9 6.978080 GGCGTGTAATGTATCCAAAATTTCAT 59.022 34.615 0.00 0.00 0.00 2.57
9 10 6.151985 AGGCGTGTAATGTATCCAAAATTTCA 59.848 34.615 0.00 0.00 0.00 2.69
10 11 6.472163 CAGGCGTGTAATGTATCCAAAATTTC 59.528 38.462 0.00 0.00 0.00 2.17
11 12 6.071616 ACAGGCGTGTAATGTATCCAAAATTT 60.072 34.615 10.95 0.00 34.05 1.82
12 13 5.417580 ACAGGCGTGTAATGTATCCAAAATT 59.582 36.000 10.95 0.00 34.05 1.82
13 14 4.947388 ACAGGCGTGTAATGTATCCAAAAT 59.053 37.500 10.95 0.00 34.05 1.82
14 15 4.155099 CACAGGCGTGTAATGTATCCAAAA 59.845 41.667 12.40 0.00 38.41 2.44
15 16 3.687212 CACAGGCGTGTAATGTATCCAAA 59.313 43.478 12.40 0.00 38.41 3.28
16 17 3.266636 CACAGGCGTGTAATGTATCCAA 58.733 45.455 12.40 0.00 38.41 3.53
17 18 2.899976 CACAGGCGTGTAATGTATCCA 58.100 47.619 12.40 0.00 38.41 3.41
29 30 1.600636 CACCCAATCACACAGGCGT 60.601 57.895 0.00 0.00 0.00 5.68
30 31 1.302431 TCACCCAATCACACAGGCG 60.302 57.895 0.00 0.00 0.00 5.52
31 32 0.250901 AGTCACCCAATCACACAGGC 60.251 55.000 0.00 0.00 0.00 4.85
32 33 3.634397 ATAGTCACCCAATCACACAGG 57.366 47.619 0.00 0.00 0.00 4.00
33 34 5.702865 CAAAATAGTCACCCAATCACACAG 58.297 41.667 0.00 0.00 0.00 3.66
34 35 4.022416 GCAAAATAGTCACCCAATCACACA 60.022 41.667 0.00 0.00 0.00 3.72
35 36 4.485163 GCAAAATAGTCACCCAATCACAC 58.515 43.478 0.00 0.00 0.00 3.82
54 55 4.155709 TCCCATTTAACACAATCAGGCAA 58.844 39.130 0.00 0.00 0.00 4.52
60 61 5.733676 AGGCAAATCCCATTTAACACAATC 58.266 37.500 0.00 0.00 34.51 2.67
70 71 1.284785 TCGAAGGAGGCAAATCCCATT 59.715 47.619 0.00 0.00 40.53 3.16
100 101 4.318332 CTTCATGTTTGAGCCACTCACTA 58.682 43.478 0.00 0.00 40.46 2.74
115 116 3.766051 GGCTCAATTTCCTTCCTTCATGT 59.234 43.478 0.00 0.00 0.00 3.21
139 140 0.326618 AGTGGTAGCCAGTAGCCCAT 60.327 55.000 0.00 0.00 45.47 4.00
164 165 3.408634 CTCCCTTGTTTCTTCGCCTTAA 58.591 45.455 0.00 0.00 0.00 1.85
193 194 2.649816 AGGAGCCTTAATTGGACCAAGT 59.350 45.455 13.43 12.96 0.00 3.16
282 294 8.532977 AAAAACGTCCAAGGATTTAAATCATG 57.467 30.769 25.55 21.91 37.15 3.07
283 295 7.817478 GGAAAAACGTCCAAGGATTTAAATCAT 59.183 33.333 25.55 18.39 37.65 2.45
285 297 7.375834 AGGAAAAACGTCCAAGGATTTAAATC 58.624 34.615 18.22 18.22 40.48 2.17
286 298 7.297936 AGGAAAAACGTCCAAGGATTTAAAT 57.702 32.000 0.00 0.00 40.48 1.40
291 307 4.211920 TCAAGGAAAAACGTCCAAGGATT 58.788 39.130 0.00 0.00 40.48 3.01
298 314 8.699749 CAAATTAATCTTCAAGGAAAAACGTCC 58.300 33.333 0.00 0.00 38.03 4.79
300 316 7.708752 TGCAAATTAATCTTCAAGGAAAAACGT 59.291 29.630 0.00 0.00 0.00 3.99
301 317 8.003784 GTGCAAATTAATCTTCAAGGAAAAACG 58.996 33.333 0.00 0.00 0.00 3.60
302 318 9.045223 AGTGCAAATTAATCTTCAAGGAAAAAC 57.955 29.630 0.00 0.00 0.00 2.43
311 327 7.894708 TCAAATGGAGTGCAAATTAATCTTCA 58.105 30.769 0.00 0.00 0.00 3.02
312 328 8.761575 TTCAAATGGAGTGCAAATTAATCTTC 57.238 30.769 0.00 0.00 0.00 2.87
351 367 4.789012 TGGATGAAAGAGGTTTGATTGC 57.211 40.909 0.00 0.00 0.00 3.56
353 369 8.654094 AGAAATTTGGATGAAAGAGGTTTGATT 58.346 29.630 0.00 0.00 0.00 2.57
354 370 8.198807 AGAAATTTGGATGAAAGAGGTTTGAT 57.801 30.769 0.00 0.00 0.00 2.57
535 552 1.442857 GGTCGAGCTCAGTGTCACG 60.443 63.158 15.40 0.00 0.00 4.35
536 553 0.664767 GTGGTCGAGCTCAGTGTCAC 60.665 60.000 16.64 10.20 0.00 3.67
537 554 0.823769 AGTGGTCGAGCTCAGTGTCA 60.824 55.000 16.64 1.44 0.00 3.58
543 560 2.026945 TTGTGCAGTGGTCGAGCTCA 62.027 55.000 16.64 5.24 0.00 4.26
562 579 2.928801 TTCGCCATACATATGCACCT 57.071 45.000 1.58 0.00 32.40 4.00
578 825 5.459768 TGTGTTGACCAATGAATGAATTCG 58.540 37.500 0.04 0.00 39.62 3.34
632 879 6.215431 TCCCTCCGATCCATATTATTTGTCAT 59.785 38.462 0.00 0.00 0.00 3.06
633 880 5.546110 TCCCTCCGATCCATATTATTTGTCA 59.454 40.000 0.00 0.00 0.00 3.58
636 883 6.054860 ACTCCCTCCGATCCATATTATTTG 57.945 41.667 0.00 0.00 0.00 2.32
639 886 6.261435 TGTTACTCCCTCCGATCCATATTAT 58.739 40.000 0.00 0.00 0.00 1.28
710 960 7.841282 TGTTGGAAAAACTTCATATAACCCA 57.159 32.000 0.00 0.00 0.00 4.51
724 974 7.884816 TTTTTGTTACGTCATGTTGGAAAAA 57.115 28.000 0.00 0.00 0.00 1.94
801 1053 7.720442 AGAAAATGCTCCCAAAATCTTATAGC 58.280 34.615 0.00 0.00 0.00 2.97
858 1111 7.452880 TCTGAAATTCGAGAAAAATGGATGT 57.547 32.000 0.00 0.00 0.00 3.06
859 1112 8.746922 TTTCTGAAATTCGAGAAAAATGGATG 57.253 30.769 13.93 0.00 35.69 3.51
929 1257 4.279671 TCCTATTCATTCTCTCGCTCCTTC 59.720 45.833 0.00 0.00 0.00 3.46
938 1266 2.366916 CCACCGCTCCTATTCATTCTCT 59.633 50.000 0.00 0.00 0.00 3.10
939 1267 2.103263 ACCACCGCTCCTATTCATTCTC 59.897 50.000 0.00 0.00 0.00 2.87
940 1268 2.119495 ACCACCGCTCCTATTCATTCT 58.881 47.619 0.00 0.00 0.00 2.40
941 1269 2.158957 TCACCACCGCTCCTATTCATTC 60.159 50.000 0.00 0.00 0.00 2.67
942 1270 1.837439 TCACCACCGCTCCTATTCATT 59.163 47.619 0.00 0.00 0.00 2.57
943 1271 1.139058 GTCACCACCGCTCCTATTCAT 59.861 52.381 0.00 0.00 0.00 2.57
944 1272 0.535335 GTCACCACCGCTCCTATTCA 59.465 55.000 0.00 0.00 0.00 2.57
1087 1415 3.794270 GCAGCGCGTTCTGGATAA 58.206 55.556 8.43 0.00 34.74 1.75
1278 1606 2.124293 CGATTCATCGTCCTCCCCA 58.876 57.895 0.80 0.00 44.74 4.96
1374 1720 0.460987 GCATCCACTCCTCCACTTCG 60.461 60.000 0.00 0.00 0.00 3.79
1470 1816 4.351938 CAGGCGACGTCCGTGGAA 62.352 66.667 10.58 0.00 41.15 3.53
1556 1902 5.461526 GGAAAAGAACACCTGCACTAATTC 58.538 41.667 0.00 0.00 0.00 2.17
1568 1914 1.866925 CCGCTCGGGAAAAGAACAC 59.133 57.895 0.00 0.00 38.47 3.32
1620 1966 3.008049 AGTGACCACTACAAGTCCCAATC 59.992 47.826 0.03 0.00 40.43 2.67
1627 1973 0.396811 GGGCAGTGACCACTACAAGT 59.603 55.000 11.25 0.00 40.20 3.16
1638 1990 2.359850 GCGTCCAATGGGCAGTGA 60.360 61.111 4.21 0.00 0.00 3.41
1640 1992 2.048023 CATGCGTCCAATGGGCAGT 61.048 57.895 4.21 0.00 40.44 4.40
1642 1994 0.322906 TAACATGCGTCCAATGGGCA 60.323 50.000 4.21 5.06 41.48 5.36
1643 1995 0.814457 TTAACATGCGTCCAATGGGC 59.186 50.000 0.00 0.00 0.00 5.36
1644 1996 2.091541 ACTTAACATGCGTCCAATGGG 58.908 47.619 0.00 0.00 0.00 4.00
1645 1997 3.312421 CCTACTTAACATGCGTCCAATGG 59.688 47.826 0.00 0.00 0.00 3.16
1646 1998 4.188462 TCCTACTTAACATGCGTCCAATG 58.812 43.478 0.00 0.00 0.00 2.82
1648 2000 3.259876 ACTCCTACTTAACATGCGTCCAA 59.740 43.478 0.00 0.00 0.00 3.53
1649 2001 2.829720 ACTCCTACTTAACATGCGTCCA 59.170 45.455 0.00 0.00 0.00 4.02
1650 2002 3.521947 ACTCCTACTTAACATGCGTCC 57.478 47.619 0.00 0.00 0.00 4.79
1651 2003 6.755141 TCAAATACTCCTACTTAACATGCGTC 59.245 38.462 0.00 0.00 0.00 5.19
1652 2004 6.636705 TCAAATACTCCTACTTAACATGCGT 58.363 36.000 0.00 0.00 0.00 5.24
1653 2005 6.757010 ACTCAAATACTCCTACTTAACATGCG 59.243 38.462 0.00 0.00 0.00 4.73
1654 2006 7.549488 ACACTCAAATACTCCTACTTAACATGC 59.451 37.037 0.00 0.00 0.00 4.06
1655 2007 9.436957 AACACTCAAATACTCCTACTTAACATG 57.563 33.333 0.00 0.00 0.00 3.21
1657 2009 9.485206 GAAACACTCAAATACTCCTACTTAACA 57.515 33.333 0.00 0.00 0.00 2.41
1658 2010 9.485206 TGAAACACTCAAATACTCCTACTTAAC 57.515 33.333 0.00 0.00 0.00 2.01
1665 2017 9.911788 ATGATAATGAAACACTCAAATACTCCT 57.088 29.630 0.00 0.00 37.67 3.69
1666 2018 9.941664 CATGATAATGAAACACTCAAATACTCC 57.058 33.333 0.00 0.00 37.67 3.85
1671 2023 9.850628 CTGAACATGATAATGAAACACTCAAAT 57.149 29.630 0.00 0.00 37.67 2.32
1672 2024 7.809331 GCTGAACATGATAATGAAACACTCAAA 59.191 33.333 0.00 0.00 37.67 2.69
1673 2025 7.175467 AGCTGAACATGATAATGAAACACTCAA 59.825 33.333 0.00 0.00 37.67 3.02
1674 2026 6.656270 AGCTGAACATGATAATGAAACACTCA 59.344 34.615 0.00 0.00 38.81 3.41
1694 2069 1.297689 GGCATGGAGTCACAGCTGA 59.702 57.895 23.35 0.00 0.00 4.26
1695 2070 0.393944 ATGGCATGGAGTCACAGCTG 60.394 55.000 13.48 13.48 32.48 4.24
1696 2071 0.330604 AATGGCATGGAGTCACAGCT 59.669 50.000 0.00 0.00 32.48 4.24
1697 2072 1.180029 AAATGGCATGGAGTCACAGC 58.820 50.000 0.00 0.00 32.48 4.40
1698 2073 3.087031 AGAAAATGGCATGGAGTCACAG 58.913 45.455 0.00 0.00 32.48 3.66
1700 2075 2.416431 GCAGAAAATGGCATGGAGTCAC 60.416 50.000 0.00 0.00 32.48 3.67
1703 2078 2.226962 AGCAGAAAATGGCATGGAGT 57.773 45.000 0.00 0.00 0.00 3.85
1704 2079 4.724074 TTAAGCAGAAAATGGCATGGAG 57.276 40.909 0.00 0.00 0.00 3.86
1705 2080 5.011943 ACTTTTAAGCAGAAAATGGCATGGA 59.988 36.000 0.00 0.00 0.00 3.41
1706 2081 5.240121 ACTTTTAAGCAGAAAATGGCATGG 58.760 37.500 0.00 0.00 0.00 3.66
1707 2082 6.790285 AACTTTTAAGCAGAAAATGGCATG 57.210 33.333 0.00 0.00 0.00 4.06
1708 2083 7.806409 AAAACTTTTAAGCAGAAAATGGCAT 57.194 28.000 0.00 0.00 0.00 4.40
1709 2084 7.622893 AAAAACTTTTAAGCAGAAAATGGCA 57.377 28.000 0.00 0.00 0.00 4.92
1732 2107 4.262851 GCCCAAAGAAATAGCAAGGGAAAA 60.263 41.667 0.00 0.00 36.96 2.29
1757 2132 4.342378 ACAAGTCAGACTGTGAGCTTCTAA 59.658 41.667 3.05 0.00 35.13 2.10
1772 2147 4.579869 ACAGCCCTAACAATACAAGTCAG 58.420 43.478 0.00 0.00 0.00 3.51
1822 2214 3.125316 CACATCCGACTTTTGCTTAGGTC 59.875 47.826 0.00 0.00 0.00 3.85
1835 2227 0.180406 AATAGGGTGCCACATCCGAC 59.820 55.000 0.00 0.00 40.09 4.79
1838 2230 2.616842 CGTTAAATAGGGTGCCACATCC 59.383 50.000 0.00 0.00 34.24 3.51
1850 2242 9.505995 GTAACTCTCTCTTTCCTCGTTAAATAG 57.494 37.037 0.00 0.00 0.00 1.73
1853 2248 6.266103 TGGTAACTCTCTCTTTCCTCGTTAAA 59.734 38.462 0.00 0.00 37.61 1.52
1861 2256 5.669164 AGACATGGTAACTCTCTCTTTCC 57.331 43.478 0.00 0.00 37.61 3.13
1888 2283 7.600752 GGTTTTGGTGCTAAGAGCTATATCTAG 59.399 40.741 0.00 0.00 42.97 2.43
1917 2312 4.074970 CAAAAGTATGAGCTGTCCTGGTT 58.925 43.478 0.00 0.00 0.00 3.67
1918 2313 3.679389 CAAAAGTATGAGCTGTCCTGGT 58.321 45.455 0.00 0.00 0.00 4.00
1919 2314 2.421424 GCAAAAGTATGAGCTGTCCTGG 59.579 50.000 0.00 0.00 0.00 4.45
1920 2315 3.341823 AGCAAAAGTATGAGCTGTCCTG 58.658 45.455 0.00 0.00 35.72 3.86
1921 2316 3.262915 AGAGCAAAAGTATGAGCTGTCCT 59.737 43.478 0.00 0.00 37.48 3.85
1922 2317 3.604582 AGAGCAAAAGTATGAGCTGTCC 58.395 45.455 0.00 0.00 37.48 4.02
1927 2322 5.149977 GTTTGTGAGAGCAAAAGTATGAGC 58.850 41.667 0.00 0.00 39.65 4.26
1939 2334 7.518731 TTTAATGTGTTTTGTTTGTGAGAGC 57.481 32.000 0.00 0.00 0.00 4.09
1945 2340 8.945057 AGCTTTCATTTAATGTGTTTTGTTTGT 58.055 25.926 4.77 0.00 0.00 2.83
1946 2341 9.424659 GAGCTTTCATTTAATGTGTTTTGTTTG 57.575 29.630 4.77 0.00 0.00 2.93
1947 2342 9.382275 AGAGCTTTCATTTAATGTGTTTTGTTT 57.618 25.926 4.77 0.00 0.00 2.83
1948 2343 8.947055 AGAGCTTTCATTTAATGTGTTTTGTT 57.053 26.923 4.77 0.00 0.00 2.83
1949 2344 8.947055 AAGAGCTTTCATTTAATGTGTTTTGT 57.053 26.923 4.77 0.00 0.00 2.83
2043 2510 5.654497 GCCAAATGCATTATATCCTAAGCC 58.346 41.667 13.39 0.00 40.77 4.35
2044 2511 5.123820 TCGCCAAATGCATTATATCCTAAGC 59.876 40.000 13.39 4.70 41.33 3.09
2046 2513 5.123820 GCTCGCCAAATGCATTATATCCTAA 59.876 40.000 13.39 0.00 41.33 2.69
2063 2530 3.003173 AGCACTAAGGGCTCGCCA 61.003 61.111 10.51 0.00 36.81 5.69
2066 2533 0.461548 TCATCAGCACTAAGGGCTCG 59.538 55.000 0.00 0.00 40.23 5.03
2248 2718 2.668632 GATCCACCGCAACCAGGA 59.331 61.111 0.00 0.00 34.12 3.86
2276 2765 3.023119 TGCGCCATGATTTTAAGTGGAT 58.977 40.909 4.18 0.00 33.53 3.41
2350 2839 1.985895 CCAAGGGGTATGGGAGGATAC 59.014 57.143 0.00 0.00 34.15 2.24
2654 3157 5.059161 TGACAAGAACTCCTCAAATGACAG 58.941 41.667 0.00 0.00 0.00 3.51
2723 3236 1.538512 TCAAGTGACTCCTAACCGTCG 59.461 52.381 0.00 0.00 32.93 5.12
2758 3271 1.583054 GCCATCTCCGAACCATGTAC 58.417 55.000 0.00 0.00 0.00 2.90
2765 3278 1.473434 CCAAGTAGGCCATCTCCGAAC 60.473 57.143 5.01 0.00 0.00 3.95
2766 3279 0.830648 CCAAGTAGGCCATCTCCGAA 59.169 55.000 5.01 0.00 0.00 4.30
2955 3494 8.926715 ACAGGTTCATTTTAAGTTTCTGTTTC 57.073 30.769 0.00 0.00 29.96 2.78
3078 3649 2.805099 CCGCTCCTCTGATCTATTTTGC 59.195 50.000 0.00 0.00 0.00 3.68
3407 3994 3.016260 GGGTTGGAGGATTCCCCC 58.984 66.667 0.00 0.00 43.33 5.40
3408 3995 1.353394 ATCGGGTTGGAGGATTCCCC 61.353 60.000 0.00 1.18 43.33 4.81
3409 3996 0.179018 CATCGGGTTGGAGGATTCCC 60.179 60.000 0.00 0.00 43.33 3.97
3496 4112 1.000896 ATGCCGGTGAAAAGGGAGG 60.001 57.895 1.90 0.00 0.00 4.30
3845 4521 0.588252 GTTAGCGGCGAGTATACGGA 59.412 55.000 12.98 0.00 0.00 4.69
3874 4550 2.034532 CCCGGCCCGTAAACCTTT 59.965 61.111 0.85 0.00 0.00 3.11
3954 4665 3.331178 CTTAAAATCGCGCGAACTGTAC 58.669 45.455 38.07 0.00 0.00 2.90
4377 5363 8.230472 AGATGTTTCTTGAAGGCCATTATTAG 57.770 34.615 5.01 0.00 0.00 1.73
4742 6024 9.941325 ATAACTGAGACAAGATCATGGATATTC 57.059 33.333 2.59 0.00 0.00 1.75
4935 6224 8.611257 AGGAATAGATACTCTGCAGTACTATCT 58.389 37.037 22.61 22.61 37.97 1.98
5007 6296 7.119846 GGCTAACATATAAACTGATTGCCCTAG 59.880 40.741 0.00 0.00 0.00 3.02
5009 6298 5.770162 GGCTAACATATAAACTGATTGCCCT 59.230 40.000 0.00 0.00 0.00 5.19
5012 6301 7.707104 ACTTGGCTAACATATAAACTGATTGC 58.293 34.615 0.00 0.00 0.00 3.56
5032 6321 2.276732 ACAGTCCCATCACAACTTGG 57.723 50.000 0.00 0.00 0.00 3.61
5053 6342 7.284074 TCAACAAAACTTATGGACACTTCCTA 58.716 34.615 0.00 0.00 43.31 2.94
5126 6415 1.612442 GGACAGAGGGGGCACACTA 60.612 63.158 0.00 0.00 0.00 2.74
5173 6462 6.036577 ACACACATTTCCACTTCAAAGTTT 57.963 33.333 0.00 0.00 37.08 2.66
5180 6469 4.601019 CACAGAACACACATTTCCACTTC 58.399 43.478 0.00 0.00 0.00 3.01
5184 6473 2.373224 TGCACAGAACACACATTTCCA 58.627 42.857 0.00 0.00 0.00 3.53
5193 6482 0.040958 CGAAGGCTTGCACAGAACAC 60.041 55.000 3.46 0.00 0.00 3.32
5263 6554 7.112452 AGTCCAATTACCAAGCCAAAATATC 57.888 36.000 0.00 0.00 0.00 1.63
5377 6669 8.500753 TTTGTTTTGCTTGAGAAGTACTAGAA 57.499 30.769 0.00 0.00 0.00 2.10
5447 6739 4.213513 AGGTGTACACAGTATACTAGGCC 58.786 47.826 26.51 0.00 0.00 5.19
5840 7145 5.760253 GTGGTCATTGATAATCTTGATCCGT 59.240 40.000 0.00 0.00 0.00 4.69
5842 7147 5.760253 ACGTGGTCATTGATAATCTTGATCC 59.240 40.000 0.00 0.00 0.00 3.36
5847 7152 7.447374 TTTCAACGTGGTCATTGATAATCTT 57.553 32.000 0.00 0.00 34.87 2.40
5917 7222 6.012508 GGGGACTTCAATATCATTCATAGGGA 60.013 42.308 0.00 0.00 0.00 4.20
6073 7380 4.080299 AGGAAATCTTTCAGTTCCGGCTAT 60.080 41.667 0.00 0.00 44.64 2.97
6085 7392 5.812642 TCGAAGACAGCATAGGAAATCTTTC 59.187 40.000 0.00 0.00 36.46 2.62
6386 7770 0.895100 TGGCGGCTTCTTTCAAGCAT 60.895 50.000 11.43 0.00 44.71 3.79
6431 7815 4.327898 GTCTATGAAACGATTAACCGCACA 59.672 41.667 0.00 0.00 0.00 4.57
6482 7866 3.058224 CCCGTCTTCAGGTTCAAATCAAC 60.058 47.826 0.00 0.00 0.00 3.18
6532 7916 4.038402 GGAAAAGACATCTATGGGCATTGG 59.962 45.833 0.00 0.00 0.00 3.16
6533 7917 4.891756 AGGAAAAGACATCTATGGGCATTG 59.108 41.667 0.00 0.00 0.00 2.82
6534 7918 4.891756 CAGGAAAAGACATCTATGGGCATT 59.108 41.667 0.00 0.00 0.00 3.56
6535 7919 4.079558 ACAGGAAAAGACATCTATGGGCAT 60.080 41.667 0.00 0.00 0.00 4.40
6586 7999 4.208686 GACTAGCAGGGGTCGCGG 62.209 72.222 6.13 0.00 0.00 6.46
6593 8006 5.336055 CGATACCAAGAATAGACTAGCAGGG 60.336 48.000 0.00 0.00 0.00 4.45
6600 8013 3.243907 GCCTGCGATACCAAGAATAGACT 60.244 47.826 0.00 0.00 0.00 3.24
6602 8015 2.288213 CGCCTGCGATACCAAGAATAGA 60.288 50.000 5.43 0.00 42.83 1.98
6626 8039 1.884926 GATGAAGAAGGCGCCGAGG 60.885 63.158 23.20 0.00 0.00 4.63
6630 8043 1.576356 CAGTAGATGAAGAAGGCGCC 58.424 55.000 21.89 21.89 0.00 6.53
6659 8148 2.128035 CCGCCGTCATTATCAGAACTC 58.872 52.381 0.00 0.00 0.00 3.01
6661 8150 1.593006 CACCGCCGTCATTATCAGAAC 59.407 52.381 0.00 0.00 0.00 3.01
6664 8153 2.154854 ATCACCGCCGTCATTATCAG 57.845 50.000 0.00 0.00 0.00 2.90
6674 8163 1.434555 TACTGTCAAAATCACCGCCG 58.565 50.000 0.00 0.00 0.00 6.46
6677 8166 5.418310 AGTGTTTACTGTCAAAATCACCG 57.582 39.130 0.00 0.00 35.34 4.94
6696 8185 3.125146 CACCACATACACGATTTCCAGTG 59.875 47.826 0.00 0.00 43.46 3.66
6697 8186 3.244422 ACACCACATACACGATTTCCAGT 60.244 43.478 0.00 0.00 0.00 4.00
6707 8196 5.277857 AGATTAGGCTACACCACATACAC 57.722 43.478 0.00 0.00 43.14 2.90
6752 8244 1.837051 TACCAGGGGCGCCATAGAG 60.837 63.158 30.85 14.88 0.00 2.43
6755 8247 3.165685 GGTACCAGGGGCGCCATA 61.166 66.667 30.85 9.14 0.00 2.74
6770 8262 2.775384 TCCATAACCGAAGCATAAGGGT 59.225 45.455 0.00 0.00 0.00 4.34
6775 8267 2.047061 AGCCTCCATAACCGAAGCATA 58.953 47.619 0.00 0.00 0.00 3.14
6776 8268 0.839946 AGCCTCCATAACCGAAGCAT 59.160 50.000 0.00 0.00 0.00 3.79
6778 8270 0.815615 CCAGCCTCCATAACCGAAGC 60.816 60.000 0.00 0.00 0.00 3.86
6781 8273 0.758734 CATCCAGCCTCCATAACCGA 59.241 55.000 0.00 0.00 0.00 4.69
6793 8285 0.610174 TCCTCACACTGACATCCAGC 59.390 55.000 0.00 0.00 46.81 4.85
6796 8288 0.603569 ACGTCCTCACACTGACATCC 59.396 55.000 0.00 0.00 0.00 3.51
6797 8289 2.288213 TGAACGTCCTCACACTGACATC 60.288 50.000 0.00 0.00 0.00 3.06
6801 8293 1.000843 CCATGAACGTCCTCACACTGA 59.999 52.381 0.00 0.00 0.00 3.41
6825 8549 2.496070 CCGAACATTACCTCCAGACTCA 59.504 50.000 0.00 0.00 0.00 3.41
6831 8555 4.829872 ACATAACCGAACATTACCTCCA 57.170 40.909 0.00 0.00 0.00 3.86
6833 8557 4.939439 ACCAACATAACCGAACATTACCTC 59.061 41.667 0.00 0.00 0.00 3.85
6834 8558 4.913784 ACCAACATAACCGAACATTACCT 58.086 39.130 0.00 0.00 0.00 3.08
6835 8559 5.632244 AACCAACATAACCGAACATTACC 57.368 39.130 0.00 0.00 0.00 2.85
6836 8560 9.706846 GTATAAACCAACATAACCGAACATTAC 57.293 33.333 0.00 0.00 0.00 1.89
6837 8561 9.669887 AGTATAAACCAACATAACCGAACATTA 57.330 29.630 0.00 0.00 0.00 1.90
6838 8562 8.570068 AGTATAAACCAACATAACCGAACATT 57.430 30.769 0.00 0.00 0.00 2.71
6839 8563 9.841295 ATAGTATAAACCAACATAACCGAACAT 57.159 29.630 0.00 0.00 0.00 2.71
6840 8564 9.316730 GATAGTATAAACCAACATAACCGAACA 57.683 33.333 0.00 0.00 0.00 3.18
6841 8565 9.538508 AGATAGTATAAACCAACATAACCGAAC 57.461 33.333 0.00 0.00 0.00 3.95
6842 8566 9.537192 CAGATAGTATAAACCAACATAACCGAA 57.463 33.333 0.00 0.00 0.00 4.30
6843 8567 8.698210 ACAGATAGTATAAACCAACATAACCGA 58.302 33.333 0.00 0.00 0.00 4.69
6848 8572 9.996554 CCATGACAGATAGTATAAACCAACATA 57.003 33.333 0.00 0.00 0.00 2.29
6929 8671 0.984230 ATCAACCCAAGGAGAAGCGA 59.016 50.000 0.00 0.00 0.00 4.93
6961 8703 9.208022 CCATGTAGTATCAATGATACGTCAAAT 57.792 33.333 22.99 12.72 46.52 2.32
6968 8710 9.982651 ACAGTAACCATGTAGTATCAATGATAC 57.017 33.333 22.14 22.14 43.52 2.24
6991 8738 6.866179 GTACATTTGTACTCCGAACTACAG 57.134 41.667 12.51 0.00 45.47 2.74
7016 8763 2.165845 AGTGTATTGGTACTCCGAGTGC 59.834 50.000 11.52 9.72 36.30 4.40
7020 8767 2.421073 CGACAGTGTATTGGTACTCCGA 59.579 50.000 0.00 0.00 36.30 4.55
7021 8768 2.793933 CGACAGTGTATTGGTACTCCG 58.206 52.381 0.00 0.00 36.30 4.63
7022 8769 2.537401 GCGACAGTGTATTGGTACTCC 58.463 52.381 0.00 0.00 0.00 3.85
7026 8778 0.173935 CCCGCGACAGTGTATTGGTA 59.826 55.000 8.23 0.00 0.00 3.25
7040 8792 1.940883 TAGTACTTGTGCTCCCCGCG 61.941 60.000 0.00 0.00 43.27 6.46
7045 8797 4.022242 TCTGAACTGTAGTACTTGTGCTCC 60.022 45.833 0.00 0.00 0.00 4.70
7059 8811 3.871594 GTGCACTTTGTACTCTGAACTGT 59.128 43.478 10.32 0.00 30.04 3.55
7128 8939 2.224426 TGCTCCCTTCAACAATGTACGT 60.224 45.455 0.00 0.00 0.00 3.57
7129 8940 2.159627 GTGCTCCCTTCAACAATGTACG 59.840 50.000 0.00 0.00 0.00 3.67
7161 8972 6.368779 AGTTTACTTGCACTTCCCTATGTA 57.631 37.500 0.00 0.00 0.00 2.29
7163 8974 6.170506 TGTAGTTTACTTGCACTTCCCTATG 58.829 40.000 0.00 0.00 0.00 2.23
7165 8976 5.306160 ACTGTAGTTTACTTGCACTTCCCTA 59.694 40.000 0.00 0.00 0.00 3.53
7166 8977 4.102681 ACTGTAGTTTACTTGCACTTCCCT 59.897 41.667 0.00 0.00 0.00 4.20
7167 8978 4.386711 ACTGTAGTTTACTTGCACTTCCC 58.613 43.478 0.00 0.00 0.00 3.97
7168 8979 6.199393 CAAACTGTAGTTTACTTGCACTTCC 58.801 40.000 9.47 0.00 45.54 3.46
7169 8980 6.037830 TCCAAACTGTAGTTTACTTGCACTTC 59.962 38.462 9.47 0.00 45.54 3.01
7219 9030 5.950965 TCTTGTAGCGATCTTCGAAATTC 57.049 39.130 0.00 0.00 43.74 2.17
7296 11418 5.244851 TGCTGTGGGCTGATTTATTTTGTTA 59.755 36.000 0.00 0.00 42.39 2.41
7334 11456 2.720578 GCGCGCATAAATGTACGTAGTA 59.279 45.455 29.10 0.00 45.11 1.82
7336 11458 1.784856 AGCGCGCATAAATGTACGTAG 59.215 47.619 35.10 0.00 33.09 3.51
7337 11459 1.842720 AGCGCGCATAAATGTACGTA 58.157 45.000 35.10 0.00 33.09 3.57
7338 11460 1.003851 AAGCGCGCATAAATGTACGT 58.996 45.000 35.10 4.19 33.09 3.57
7339 11461 2.914816 TAAGCGCGCATAAATGTACG 57.085 45.000 35.10 3.40 0.00 3.67
7340 11462 6.302313 CCTTAAATAAGCGCGCATAAATGTAC 59.698 38.462 35.10 0.00 32.02 2.90
7376 11498 1.124780 GAGGGAGGGGAAGAAGTAGC 58.875 60.000 0.00 0.00 0.00 3.58
7377 11499 1.693083 GGGAGGGAGGGGAAGAAGTAG 60.693 61.905 0.00 0.00 0.00 2.57
7378 11500 0.342313 GGGAGGGAGGGGAAGAAGTA 59.658 60.000 0.00 0.00 0.00 2.24
7391 11513 2.606519 TGACGTTGGGAGGGAGGG 60.607 66.667 0.00 0.00 0.00 4.30
7394 11516 1.052124 AGTTGTGACGTTGGGAGGGA 61.052 55.000 0.00 0.00 0.00 4.20
7395 11517 0.602905 GAGTTGTGACGTTGGGAGGG 60.603 60.000 0.00 0.00 0.00 4.30
7406 11536 1.658994 GTGTTGGTTCGGAGTTGTGA 58.341 50.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.