AutoCloner

Multiple sequence alignment - TraesCS4D01G125500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G125500	chr4D	100.000	3316	0	0	1	3316	109913110	109909795	0.000000e+00	6124.0
1	TraesCS4D01G125500	chr4D	100.000	517	0	0	3659	4175	109909452	109908936	0.000000e+00	955.0
2	TraesCS4D01G125500	chr4A	94.081	3058	124	29	1	3036	466924873	466927895	0.000000e+00	4591.0
3	TraesCS4D01G125500	chr4A	95.882	510	11	6	3662	4170	466928237	466928737	0.000000e+00	817.0
4	TraesCS4D01G125500	chr4A	96.538	260	7	2	3059	3316	466927891	466928150	2.980000e-116	429.0
5	TraesCS4D01G125500	chr4B	94.421	2599	76	24	740	3316	171028959	171026408	0.000000e+00	3932.0
6	TraesCS4D01G125500	chr4B	91.939	521	21	6	3659	4175	171026332	171025829	0.000000e+00	710.0
7	TraesCS4D01G125500	chr4B	84.146	492	50	17	1	483	171090242	171089770	6.360000e-123	451.0
8	TraesCS4D01G125500	chr4B	86.957	230	17	6	524	745	171089699	171089475	3.220000e-61	246.0
9	TraesCS4D01G125500	chr4B	77.236	123	20	5	2582	2696	250806087	250805965	9.690000e-07	65.8
10	TraesCS4D01G125500	chr4B	76.423	123	21	5	2582	2696	250758337	250758215	4.510000e-05	60.2
11	TraesCS4D01G125500	chr5D	84.428	1066	127	27	1159	2191	242356809	242357868	0.000000e+00	1013.0
12	TraesCS4D01G125500	chr5A	88.186	838	90	6	1159	1991	310874921	310874088	0.000000e+00	990.0
13	TraesCS4D01G125500	chr5B	88.053	837	93	6	1159	1991	259538264	259539097	0.000000e+00	985.0
14	TraesCS4D01G125500	chr1A	83.654	832	132	4	1159	1988	500343352	500342523	0.000000e+00	780.0
15	TraesCS4D01G125500	chr1D	80.607	1021	174	18	1187	2188	404970783	404969768	0.000000e+00	767.0
16	TraesCS4D01G125500	chr1B	83.562	803	130	2	1187	1988	544726890	544726089	0.000000e+00	750.0
17	TraesCS4D01G125500	chr3A	87.335	529	67	0	1159	1687	579552998	579553526	1.280000e-169	606.0
18	TraesCS4D01G125500	chr3A	79.562	137	28	0	2299	2435	579554290	579554426	9.550000e-17	99.0
19	TraesCS4D01G125500	chr6B	79.801	302	55	6	1643	1941	717076325	717076027	9.090000e-52	215.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G125500	chr4D	109908936	109913110	4174	True	3539.500000	6124	100.000000	1	4175	2	chr4D.!!$R1	4174
1	TraesCS4D01G125500	chr4A	466924873	466928737	3864	False	1945.666667	4591	95.500333	1	4170	3	chr4A.!!$F1	4169
2	TraesCS4D01G125500	chr4B	171025829	171028959	3130	True	2321.000000	3932	93.180000	740	4175	2	chr4B.!!$R3	3435
3	TraesCS4D01G125500	chr4B	171089475	171090242	767	True	348.500000	451	85.551500	1	745	2	chr4B.!!$R4	744
4	TraesCS4D01G125500	chr5D	242356809	242357868	1059	False	1013.000000	1013	84.428000	1159	2191	1	chr5D.!!$F1	1032
5	TraesCS4D01G125500	chr5A	310874088	310874921	833	True	990.000000	990	88.186000	1159	1991	1	chr5A.!!$R1	832
6	TraesCS4D01G125500	chr5B	259538264	259539097	833	False	985.000000	985	88.053000	1159	1991	1	chr5B.!!$F1	832
7	TraesCS4D01G125500	chr1A	500342523	500343352	829	True	780.000000	780	83.654000	1159	1988	1	chr1A.!!$R1	829
8	TraesCS4D01G125500	chr1D	404969768	404970783	1015	True	767.000000	767	80.607000	1187	2188	1	chr1D.!!$R1	1001
9	TraesCS4D01G125500	chr1B	544726089	544726890	801	True	750.000000	750	83.562000	1187	1988	1	chr1B.!!$R1	801
10	TraesCS4D01G125500	chr3A	579552998	579554426	1428	False	352.500000	606	83.448500	1159	2435	2	chr3A.!!$F1	1276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
881	942	0.107831	TCCACACCTTCCAAACTCCG	59.892	55.0	4.63	F
899	960	6.546428	ACTCCGAATCCATCTTTTTCTCTA	57.454	37.5	2.43	F
1776	1961	1.326213	CCGAGGCTGACATCTGGAGT	61.326	60.0	3.85	F
2296	2599	0.594602	CCTTGATGGTGTGTGTGCTG	59.405	55.0	4.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1776	1961	1.314730	TGTAGAGCATGACGCCGATA	58.685	50.000	44.04	2.92	R
2056	2335	1.541588	GGGTGATCTGGCAACTCAAAC	59.458	52.381	37.61	2.93	R
3096	3402	2.027285	TCCTTTCTTCATCATCGCCACA	60.027	45.455	0.00	4.17	R
3984	4300	1.071471	CCAAGGAACACCAGACGCT	59.929	57.895	0.00	5.07	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	72	7.066307	AGCCAATTTTTATTCAGAACAAGGT	57.934	32.000	0.00	0.00	0.00	3.50
113	114	3.004106	GCTTTTGCGCAGGATGATCTATT	59.996	43.478	11.31	0.00	34.25	1.73
176	178	5.913137	TTTGGAAGGGTTTACATGCTATG	57.087	39.130	0.00	0.00	0.00	2.23
184	186	9.289782	GAAGGGTTTACATGCTATGATAATCTT	57.710	33.333	0.00	0.00	0.00	2.40
195	197	8.310406	TGCTATGATAATCTTGTTTACGATGG	57.690	34.615	0.00	0.00	0.00	3.51
213	215	4.499183	GATGGGAGCTGCATATACTGTAC	58.501	47.826	7.79	0.00	0.00	2.90
231	241	2.703798	CGCAAGTTGCCCCATGAGG	61.704	63.158	21.84	1.51	41.12	3.86
238	248	4.059773	AGTTGCCCCATGAGGAATTTTA	57.940	40.909	0.00	0.00	38.24	1.52
241	251	2.024080	TGCCCCATGAGGAATTTTAGCT	60.024	45.455	0.00	0.00	38.24	3.32
280	293	8.478066	TCAGTTCTCAACATAAGCACTGTATAT	58.522	33.333	3.52	0.00	38.59	0.86
359	372	3.643792	GCTTCCAGGTGATAGGATACAGT	59.356	47.826	0.00	0.00	41.41	3.55
361	374	4.536295	TCCAGGTGATAGGATACAGTCA	57.464	45.455	0.00	0.00	41.41	3.41
362	375	4.215908	TCCAGGTGATAGGATACAGTCAC	58.784	47.826	4.56	4.56	46.37	3.67
368	381	3.891977	TGATAGGATACAGTCACCTGAGC	59.108	47.826	8.28	0.00	41.50	4.26
377	390	1.986757	TCACCTGAGCTCTGAGGCC	60.987	63.158	21.10	0.00	37.49	5.19
382	395	1.229304	TGAGCTCTGAGGCCTGGAA	60.229	57.895	12.00	0.00	0.00	3.53
424	439	8.890124	ATGTAGAGATGTTGAATCATCAGAAG	57.110	34.615	8.93	0.00	44.46	2.85
426	441	8.534496	TGTAGAGATGTTGAATCATCAGAAGAA	58.466	33.333	8.93	0.00	44.46	2.52
430	445	9.761504	GAGATGTTGAATCATCAGAAGAATAGA	57.238	33.333	8.93	0.00	44.46	1.98
492	508	7.064728	GTGTGTGTATAGAGATTGAAAAGTCCC	59.935	40.741	0.00	0.00	0.00	4.46
496	512	3.618690	AGAGATTGAAAAGTCCCGGAG	57.381	47.619	0.73	0.00	0.00	4.63
510	526	0.109342	CCGGAGCCTTATGGATGCTT	59.891	55.000	0.00	0.00	37.97	3.91
514	530	3.244215	CGGAGCCTTATGGATGCTTTAGA	60.244	47.826	3.02	0.00	37.97	2.10
517	533	6.112058	GGAGCCTTATGGATGCTTTAGATAG	58.888	44.000	0.00	0.00	37.11	2.08
518	534	6.070538	GGAGCCTTATGGATGCTTTAGATAGA	60.071	42.308	0.00	0.00	37.11	1.98
519	535	7.365473	GGAGCCTTATGGATGCTTTAGATAGAT	60.365	40.741	0.00	0.00	37.11	1.98
520	536	7.337167	AGCCTTATGGATGCTTTAGATAGATG	58.663	38.462	0.00	0.00	34.57	2.90
538	582	7.655328	AGATAGATGAGAAATGTTGAATCGACC	59.345	37.037	0.00	0.00	0.00	4.79
552	596	5.879237	TGAATCGACCTCAATTTTATGCAC	58.121	37.500	0.00	0.00	0.00	4.57
701	747	8.829612	GTGCATTTATCTTGGAAAAATAATGGG	58.170	33.333	0.00	0.00	0.00	4.00
722	768	4.270325	GGGCATACACTCGAAGAATTGTAC	59.730	45.833	0.00	0.00	37.73	2.90
813	874	1.952296	CAAGTGAGGAAGCAAGCAAGT	59.048	47.619	0.00	0.00	0.00	3.16
814	875	3.141398	CAAGTGAGGAAGCAAGCAAGTA	58.859	45.455	0.00	0.00	0.00	2.24
815	876	3.492102	AGTGAGGAAGCAAGCAAGTAA	57.508	42.857	0.00	0.00	0.00	2.24
816	877	3.406764	AGTGAGGAAGCAAGCAAGTAAG	58.593	45.455	0.00	0.00	0.00	2.34
817	878	2.095516	GTGAGGAAGCAAGCAAGTAAGC	60.096	50.000	0.00	0.00	0.00	3.09
819	880	3.007940	TGAGGAAGCAAGCAAGTAAGCTA	59.992	43.478	0.00	0.00	45.89	3.32
820	881	4.195416	GAGGAAGCAAGCAAGTAAGCTAT	58.805	43.478	0.00	0.00	45.89	2.97
821	882	5.104941	TGAGGAAGCAAGCAAGTAAGCTATA	60.105	40.000	0.00	0.00	45.89	1.31
822	883	5.934781	AGGAAGCAAGCAAGTAAGCTATAT	58.065	37.500	0.00	0.00	45.89	0.86
823	884	5.994668	AGGAAGCAAGCAAGTAAGCTATATC	59.005	40.000	0.00	0.00	45.89	1.63
824	885	5.180304	GGAAGCAAGCAAGTAAGCTATATCC	59.820	44.000	0.00	0.00	45.89	2.59
825	886	4.310769	AGCAAGCAAGTAAGCTATATCCG	58.689	43.478	0.00	0.00	45.89	4.18
826	887	3.433615	GCAAGCAAGTAAGCTATATCCGG	59.566	47.826	0.00	0.00	45.89	5.14
881	942	0.107831	TCCACACCTTCCAAACTCCG	59.892	55.000	0.00	0.00	0.00	4.63
899	960	6.546428	ACTCCGAATCCATCTTTTTCTCTA	57.454	37.500	0.00	0.00	0.00	2.43
902	963	7.124573	TCCGAATCCATCTTTTTCTCTATCA	57.875	36.000	0.00	0.00	0.00	2.15
1776	1961	1.326213	CCGAGGCTGACATCTGGAGT	61.326	60.000	0.00	0.00	0.00	3.85
1997	2271	1.480137	CCTCAGTAAGCACTCTCCCAG	59.520	57.143	0.00	0.00	30.46	4.45
2010	2284	2.770802	CTCTCCCAGACCTGATTCATGT	59.229	50.000	0.00	0.00	0.00	3.21
2056	2335	0.754957	TGGCCTGAAAGTTGTGTGGG	60.755	55.000	3.32	0.00	0.00	4.61
2213	2514	4.381411	AGGAACTCTTGTTTTTCTCCTCG	58.619	43.478	0.00	0.00	36.39	4.63
2296	2599	0.594602	CCTTGATGGTGTGTGTGCTG	59.405	55.000	0.00	0.00	0.00	4.41
2511	2815	2.049228	GCTATCGATAACACGGTTCCG	58.951	52.381	6.58	9.81	0.00	4.30
2732	3036	7.661536	ATCAACAGACTAGGTAGCTGAATTA	57.338	36.000	4.27	0.00	34.12	1.40
2893	3197	2.744202	GGCTGACACTGACAATGTAAGG	59.256	50.000	3.63	0.00	30.10	2.69
2894	3198	3.557054	GGCTGACACTGACAATGTAAGGA	60.557	47.826	3.63	0.00	30.10	3.36
2898	3202	5.432645	TGACACTGACAATGTAAGGAACAA	58.567	37.500	2.36	0.00	42.70	2.83
2907	3211	9.214957	TGACAATGTAAGGAACAACAAGTATAG	57.785	33.333	0.00	0.00	42.70	1.31
2934	3238	8.663771	TTGAGTATATACATTACACATACGCG	57.336	34.615	15.18	3.53	0.00	6.01
2941	3245	4.042398	ACATTACACATACGCGATCTGAC	58.958	43.478	15.93	0.00	0.00	3.51
2962	3266	2.665519	CGCACAGAAGTTACATTGCACC	60.666	50.000	0.00	0.00	0.00	5.01
3012	3318	6.299805	TGATAGCCAGTTTACTCAGTTGAT	57.700	37.500	0.00	0.00	0.00	2.57
3021	3327	9.334947	CCAGTTTACTCAGTTGATGATGATTAT	57.665	33.333	0.00	0.00	37.28	1.28
3051	3357	9.696917	ACTTTATTGCATCCAAAGAAACTAAAG	57.303	29.630	17.30	0.00	34.89	1.85
3052	3358	9.912634	CTTTATTGCATCCAAAGAAACTAAAGA	57.087	29.630	8.70	0.00	32.77	2.52
3056	3362	8.635765	TTGCATCCAAAGAAACTAAAGATACT	57.364	30.769	0.00	0.00	0.00	2.12
3057	3363	8.635765	TGCATCCAAAGAAACTAAAGATACTT	57.364	30.769	0.00	0.00	0.00	2.24
3096	3402	9.972106	GATGGGAGGATAGATTATTCAGAATTT	57.028	33.333	0.00	0.00	0.00	1.82
3179	3485	9.120538	GAGAGATCTAGTTCTAGAGTGAAACAT	57.879	37.037	13.75	0.00	41.43	2.71
3197	3503	8.905702	GTGAAACATACATTTTAGCTCAAACAG	58.094	33.333	0.00	0.00	36.32	3.16
3779	4095	4.264850	TGAGGGAGAAGAAACATAGAGGGA	60.265	45.833	0.00	0.00	0.00	4.20
4026	4342	7.041167	TGGTTTGTCATTACAGAGAATTGACTG	60.041	37.037	6.85	6.85	36.83	3.51
4031	4347	5.863935	TCATTACAGAGAATTGACTGACACG	59.136	40.000	13.24	0.00	37.54	4.49
4106	4422	3.380004	TGGTCGCAACTTCATCAAACTTT	59.620	39.130	0.00	0.00	0.00	2.66
4109	4425	5.273944	GTCGCAACTTCATCAAACTTTCTT	58.726	37.500	0.00	0.00	0.00	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	6.703607	AGGCATACATCGATCTTTCTAGTTTG	59.296	38.462	0.00	0.00	0.00	2.93
25	26	5.615544	GCTTACATTTAGCAGGCATACATCG	60.616	44.000	0.00	0.00	38.51	3.84
176	178	5.992217	AGCTCCCATCGTAAACAAGATTATC	59.008	40.000	0.00	0.00	0.00	1.75
184	186	0.323302	TGCAGCTCCCATCGTAAACA	59.677	50.000	0.00	0.00	0.00	2.83
195	197	2.288213	TGCGTACAGTATATGCAGCTCC	60.288	50.000	0.00	0.00	34.84	4.70
213	215	2.703798	CCTCATGGGGCAACTTGCG	61.704	63.158	0.00	0.00	46.21	4.85
222	232	4.141158	ACCTAGCTAAAATTCCTCATGGGG	60.141	45.833	4.76	4.76	35.33	4.96
229	239	6.898521	ACTAGAGACACCTAGCTAAAATTCCT	59.101	38.462	0.00	0.00	39.71	3.36
231	241	7.773149	TGACTAGAGACACCTAGCTAAAATTC	58.227	38.462	0.00	0.00	39.71	2.17
238	248	4.018779	AGAACTGACTAGAGACACCTAGCT	60.019	45.833	0.00	0.00	39.71	3.32
241	251	5.500546	TGAGAACTGACTAGAGACACCTA	57.499	43.478	0.00	0.00	0.00	3.08
280	293	8.424918	CCTCTGAAACTCCAAATAAGATAGCTA	58.575	37.037	0.00	0.00	0.00	3.32
359	372	1.986757	GGCCTCAGAGCTCAGGTGA	60.987	63.158	17.77	10.20	31.65	4.02
361	374	1.988956	CAGGCCTCAGAGCTCAGGT	60.989	63.158	17.77	0.00	31.65	4.00
362	375	2.733669	CCAGGCCTCAGAGCTCAGG	61.734	68.421	17.77	15.89	0.00	3.86
363	376	1.263342	TTCCAGGCCTCAGAGCTCAG	61.263	60.000	17.77	8.39	0.00	3.35
364	377	1.229304	TTCCAGGCCTCAGAGCTCA	60.229	57.895	17.77	0.00	0.00	4.26
365	378	0.975040	TCTTCCAGGCCTCAGAGCTC	60.975	60.000	0.00	5.27	0.00	4.09
368	381	3.037549	AGTAATCTTCCAGGCCTCAGAG	58.962	50.000	0.00	0.00	0.00	3.35
492	508	1.972872	AAAGCATCCATAAGGCTCCG	58.027	50.000	0.00	0.00	36.76	4.63
496	512	7.334090	TCATCTATCTAAAGCATCCATAAGGC	58.666	38.462	0.00	0.00	33.74	4.35
514	530	7.504403	AGGTCGATTCAACATTTCTCATCTAT	58.496	34.615	0.00	0.00	0.00	1.98
517	533	5.582269	TGAGGTCGATTCAACATTTCTCATC	59.418	40.000	0.00	0.00	0.00	2.92
518	534	5.491070	TGAGGTCGATTCAACATTTCTCAT	58.509	37.500	0.00	0.00	0.00	2.90
519	535	4.893608	TGAGGTCGATTCAACATTTCTCA	58.106	39.130	0.00	0.00	0.00	3.27
520	536	5.862924	TTGAGGTCGATTCAACATTTCTC	57.137	39.130	10.24	0.00	30.03	2.87
538	582	2.684881	AGCCCTCGTGCATAAAATTGAG	59.315	45.455	0.00	0.00	0.00	3.02
701	747	7.932120	ATAGTACAATTCTTCGAGTGTATGC	57.068	36.000	0.00	0.00	0.00	3.14
722	768	6.370718	GGTACGCCCCATTTTGATACTAATAG	59.629	42.308	0.00	0.00	0.00	1.73
881	942	8.498054	TGTGTGATAGAGAAAAAGATGGATTC	57.502	34.615	0.00	0.00	0.00	2.52
899	960	2.365293	GGTTGGAAAGCCTTTGTGTGAT	59.635	45.455	0.00	0.00	38.67	3.06
902	963	1.859302	TGGTTGGAAAGCCTTTGTGT	58.141	45.000	0.00	0.00	45.42	3.72
1776	1961	1.314730	TGTAGAGCATGACGCCGATA	58.685	50.000	0.00	0.00	44.04	2.92
1997	2271	4.139786	ACCATATGCACATGAATCAGGTC	58.860	43.478	6.52	0.00	0.00	3.85
2010	2284	3.326836	TCGACACAAGAACCATATGCA	57.673	42.857	0.00	0.00	0.00	3.96
2056	2335	1.541588	GGGTGATCTGGCAACTCAAAC	59.458	52.381	0.00	0.00	37.61	2.93
2213	2514	7.194278	TCAATTCAACAGCTACGAGTAGATAC	58.806	38.462	13.89	0.00	35.21	2.24
2296	2599	1.954927	GCACCCAGCTATAACCTGAC	58.045	55.000	0.00	0.00	41.15	3.51
2511	2815	4.536065	TGATGAAAAATCTGTCGTGCAAC	58.464	39.130	0.00	0.00	0.00	4.17
2918	3222	5.209977	GTCAGATCGCGTATGTGTAATGTA	58.790	41.667	5.77	0.00	30.88	2.29
2919	3223	4.042398	GTCAGATCGCGTATGTGTAATGT	58.958	43.478	5.77	0.00	30.88	2.71
2941	3245	2.574322	GTGCAATGTAACTTCTGTGCG	58.426	47.619	0.00	0.00	0.00	5.34
2946	3250	5.606348	TTTTTGGGTGCAATGTAACTTCT	57.394	34.783	0.00	0.00	0.00	2.85
2954	3258	3.515104	AGGTCCTATTTTTGGGTGCAATG	59.485	43.478	0.00	0.00	0.00	2.82
3031	3337	8.635765	AGTATCTTTAGTTTCTTTGGATGCAA	57.364	30.769	0.00	0.00	0.00	4.08
3032	3338	8.635765	AAGTATCTTTAGTTTCTTTGGATGCA	57.364	30.769	0.00	0.00	0.00	3.96
3033	3339	9.914131	AAAAGTATCTTTAGTTTCTTTGGATGC	57.086	29.630	0.00	0.00	31.20	3.91
3035	3341	9.914131	GCAAAAGTATCTTTAGTTTCTTTGGAT	57.086	29.630	0.00	0.00	31.20	3.41
3036	3342	8.908903	TGCAAAAGTATCTTTAGTTTCTTTGGA	58.091	29.630	0.00	0.00	31.20	3.53
3037	3343	8.968242	GTGCAAAAGTATCTTTAGTTTCTTTGG	58.032	33.333	0.00	0.00	31.20	3.28
3038	3344	9.515020	TGTGCAAAAGTATCTTTAGTTTCTTTG	57.485	29.630	0.00	0.00	31.20	2.77
3048	3354	9.071276	CCATCCTATATGTGCAAAAGTATCTTT	57.929	33.333	0.00	0.00	0.00	2.52
3049	3355	7.667219	CCCATCCTATATGTGCAAAAGTATCTT	59.333	37.037	0.00	0.00	0.00	2.40
3050	3356	7.017551	TCCCATCCTATATGTGCAAAAGTATCT	59.982	37.037	0.00	0.00	0.00	1.98
3051	3357	7.168219	TCCCATCCTATATGTGCAAAAGTATC	58.832	38.462	0.00	0.00	0.00	2.24
3052	3358	7.090319	TCCCATCCTATATGTGCAAAAGTAT	57.910	36.000	0.00	0.00	0.00	2.12
3053	3359	6.465751	CCTCCCATCCTATATGTGCAAAAGTA	60.466	42.308	0.00	0.00	0.00	2.24
3054	3360	5.380043	CTCCCATCCTATATGTGCAAAAGT	58.620	41.667	0.00	0.00	0.00	2.66
3055	3361	4.763793	CCTCCCATCCTATATGTGCAAAAG	59.236	45.833	0.00	0.00	0.00	2.27
3056	3362	4.415179	TCCTCCCATCCTATATGTGCAAAA	59.585	41.667	0.00	0.00	0.00	2.44
3057	3363	3.980022	TCCTCCCATCCTATATGTGCAAA	59.020	43.478	0.00	0.00	0.00	3.68
3096	3402	2.027285	TCCTTTCTTCATCATCGCCACA	60.027	45.455	0.00	0.00	0.00	4.17
3179	3485	6.121776	TCTCCCTGTTTGAGCTAAAATGTA	57.878	37.500	0.00	0.00	0.00	2.29
3180	3486	4.985538	TCTCCCTGTTTGAGCTAAAATGT	58.014	39.130	0.00	0.00	0.00	2.71
3197	3503	2.042831	GTGGTGCTGCACATCTCCC	61.043	63.158	31.35	15.50	35.86	4.30
3262	3569	2.103432	TCTGTCCACGGTTTTAGCTCAA	59.897	45.455	0.00	0.00	0.00	3.02
3269	3576	4.200874	TGTACAAATCTGTCCACGGTTTT	58.799	39.130	0.00	0.00	36.96	2.43
3273	3580	4.253685	AGATTGTACAAATCTGTCCACGG	58.746	43.478	13.23	0.00	35.79	4.94
3974	4290	3.067106	ACACCAGACGCTGTGAAATAAG	58.933	45.455	0.00	0.00	0.00	1.73
3984	4300	1.071471	CCAAGGAACACCAGACGCT	59.929	57.895	0.00	0.00	0.00	5.07
4106	4422	4.900684	TGTTCATTTACGTGGGATGAAGA	58.099	39.130	17.67	15.18	39.63	2.87
4109	4425	4.638421	GGATTGTTCATTTACGTGGGATGA	59.362	41.667	0.00	2.12	0.00	2.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.