Multiple sequence alignment - TraesCS4D01G125300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G125300 chr4D 100.000 4375 0 0 1 4375 109468594 109472968 0.000000e+00 8080.0
1 TraesCS4D01G125300 chr4D 92.750 400 28 1 229 627 203460792 203460393 1.060000e-160 577.0
2 TraesCS4D01G125300 chr4B 89.918 3432 143 72 758 4099 170926789 170930107 0.000000e+00 4233.0
3 TraesCS4D01G125300 chr4B 87.410 278 26 4 4105 4374 170930153 170930429 1.180000e-80 311.0
4 TraesCS4D01G125300 chr4B 86.463 229 10 12 3 228 170926399 170926609 9.460000e-57 231.0
5 TraesCS4D01G125300 chr4A 91.895 2517 117 32 797 3273 466941813 466939344 0.000000e+00 3437.0
6 TraesCS4D01G125300 chr4A 86.567 871 37 26 3272 4095 466939170 466938333 0.000000e+00 887.0
7 TraesCS4D01G125300 chr7B 82.192 803 117 19 1001 1796 109702396 109703179 0.000000e+00 667.0
8 TraesCS4D01G125300 chr7A 82.170 802 119 17 1001 1796 148415106 148415889 0.000000e+00 667.0
9 TraesCS4D01G125300 chr7A 81.132 318 48 5 1292 1606 681014635 681014327 1.220000e-60 244.0
10 TraesCS4D01G125300 chr7D 82.067 803 118 19 1001 1796 146862920 146863703 0.000000e+00 662.0
11 TraesCS4D01G125300 chr7D 93.267 401 25 2 228 627 266698333 266697934 1.360000e-164 590.0
12 TraesCS4D01G125300 chr7D 92.537 402 29 1 228 628 524111307 524110906 3.790000e-160 575.0
13 TraesCS4D01G125300 chr6B 81.763 817 123 23 1001 1810 593711934 593712731 0.000000e+00 660.0
14 TraesCS4D01G125300 chr6B 100.000 28 0 0 3246 3273 423096414 423096441 8.000000e-03 52.8
15 TraesCS4D01G125300 chr6A 81.763 817 123 23 1001 1810 543394805 543395602 0.000000e+00 660.0
16 TraesCS4D01G125300 chr6A 100.000 28 0 0 3246 3273 26325351 26325324 8.000000e-03 52.8
17 TraesCS4D01G125300 chr6D 81.518 817 125 23 1001 1810 397082345 397083142 0.000000e+00 649.0
18 TraesCS4D01G125300 chr3D 92.875 407 25 3 222 627 143129871 143130274 4.870000e-164 588.0
19 TraesCS4D01G125300 chr3D 80.961 541 90 11 1016 1551 302850164 302849632 2.430000e-112 416.0
20 TraesCS4D01G125300 chr1D 92.804 403 23 5 229 627 436967766 436968166 2.930000e-161 579.0
21 TraesCS4D01G125300 chr1D 100.000 28 0 0 3246 3273 310161159 310161132 8.000000e-03 52.8
22 TraesCS4D01G125300 chr1A 92.537 402 27 3 227 627 513366622 513367021 1.360000e-159 573.0
23 TraesCS4D01G125300 chr1A 100.000 28 0 0 3246 3273 508959173 508959146 8.000000e-03 52.8
24 TraesCS4D01G125300 chr5B 91.367 417 31 5 214 627 389754844 389754430 2.280000e-157 566.0
25 TraesCS4D01G125300 chr3B 91.367 417 30 6 214 627 766299604 766299191 2.280000e-157 566.0
26 TraesCS4D01G125300 chr1B 91.367 417 31 5 214 627 70554006 70554420 2.280000e-157 566.0
27 TraesCS4D01G125300 chr3A 100.000 28 0 0 3246 3273 411267369 411267342 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G125300 chr4D 109468594 109472968 4374 False 8080.000000 8080 100.000000 1 4375 1 chr4D.!!$F1 4374
1 TraesCS4D01G125300 chr4B 170926399 170930429 4030 False 1591.666667 4233 87.930333 3 4374 3 chr4B.!!$F1 4371
2 TraesCS4D01G125300 chr4A 466938333 466941813 3480 True 2162.000000 3437 89.231000 797 4095 2 chr4A.!!$R1 3298
3 TraesCS4D01G125300 chr7B 109702396 109703179 783 False 667.000000 667 82.192000 1001 1796 1 chr7B.!!$F1 795
4 TraesCS4D01G125300 chr7A 148415106 148415889 783 False 667.000000 667 82.170000 1001 1796 1 chr7A.!!$F1 795
5 TraesCS4D01G125300 chr7D 146862920 146863703 783 False 662.000000 662 82.067000 1001 1796 1 chr7D.!!$F1 795
6 TraesCS4D01G125300 chr6B 593711934 593712731 797 False 660.000000 660 81.763000 1001 1810 1 chr6B.!!$F2 809
7 TraesCS4D01G125300 chr6A 543394805 543395602 797 False 660.000000 660 81.763000 1001 1810 1 chr6A.!!$F1 809
8 TraesCS4D01G125300 chr6D 397082345 397083142 797 False 649.000000 649 81.518000 1001 1810 1 chr6D.!!$F1 809
9 TraesCS4D01G125300 chr3D 302849632 302850164 532 True 416.000000 416 80.961000 1016 1551 1 chr3D.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.036671 CCTTCCTTTACGCCGTTCCT 60.037 55.0 0.00 0.0 0.00 3.36 F
220 221 0.037605 CTTTACGCCGTTCCTCACCT 60.038 55.0 0.00 0.0 0.00 4.00 F
2030 2120 0.037975 GACGTCCTCGCCAAAGGTAA 60.038 55.0 3.51 0.0 41.18 2.85 F
2480 2597 0.248377 GCTGATTGATCTTGTGCGCC 60.248 55.0 4.18 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2138 0.171903 GGCCGCTAGTAGACGAAACA 59.828 55.0 13.35 0.00 0.00 2.83 R
2056 2146 0.318784 GATTGGACGGCCGCTAGTAG 60.319 60.0 28.58 0.00 36.79 2.57 R
2866 2991 0.107165 ATTTTCTCTAGGTGGCGGCC 60.107 55.0 13.32 13.32 0.00 6.13 R
4345 4776 0.237498 CGTTCGCTGGGAAGGTTTTC 59.763 55.0 16.15 0.89 36.13 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.611225 AGCAAGCTATACTCCTGCAC 57.389 50.000 7.03 0.00 0.00 4.57
32 33 1.134401 GCAAGCTATACTCCTGCACCA 60.134 52.381 0.00 0.00 0.00 4.17
33 34 2.831333 CAAGCTATACTCCTGCACCAG 58.169 52.381 0.00 0.00 0.00 4.00
35 36 0.755686 GCTATACTCCTGCACCAGCT 59.244 55.000 0.00 0.00 42.74 4.24
61 62 2.264124 CATATGCATGCAGGAGGCC 58.736 57.895 26.69 0.00 43.89 5.19
62 63 0.538746 CATATGCATGCAGGAGGCCA 60.539 55.000 26.69 0.00 43.89 5.36
118 119 3.189376 TTGCACCTCCATGTCGCCA 62.189 57.895 0.00 0.00 0.00 5.69
119 120 2.821366 GCACCTCCATGTCGCCAG 60.821 66.667 0.00 0.00 0.00 4.85
120 121 2.821366 CACCTCCATGTCGCCAGC 60.821 66.667 0.00 0.00 0.00 4.85
121 122 4.101448 ACCTCCATGTCGCCAGCC 62.101 66.667 0.00 0.00 0.00 4.85
122 123 4.100084 CCTCCATGTCGCCAGCCA 62.100 66.667 0.00 0.00 0.00 4.75
123 124 2.821366 CTCCATGTCGCCAGCCAC 60.821 66.667 0.00 0.00 0.00 5.01
124 125 3.610619 CTCCATGTCGCCAGCCACA 62.611 63.158 0.00 0.00 0.00 4.17
125 126 3.434319 CCATGTCGCCAGCCACAC 61.434 66.667 0.00 0.00 0.00 3.82
126 127 2.359107 CATGTCGCCAGCCACACT 60.359 61.111 0.00 0.00 0.00 3.55
127 128 2.046892 ATGTCGCCAGCCACACTC 60.047 61.111 0.00 0.00 0.00 3.51
180 181 0.179140 CCATTACGCCAACACCATGC 60.179 55.000 0.00 0.00 0.00 4.06
200 201 1.064389 CCCCCTTTCATCTCACCCTTC 60.064 57.143 0.00 0.00 0.00 3.46
201 202 1.064389 CCCCTTTCATCTCACCCTTCC 60.064 57.143 0.00 0.00 0.00 3.46
202 203 1.918957 CCCTTTCATCTCACCCTTCCT 59.081 52.381 0.00 0.00 0.00 3.36
203 204 2.310052 CCCTTTCATCTCACCCTTCCTT 59.690 50.000 0.00 0.00 0.00 3.36
215 216 0.036671 CCTTCCTTTACGCCGTTCCT 60.037 55.000 0.00 0.00 0.00 3.36
217 218 0.680618 TTCCTTTACGCCGTTCCTCA 59.319 50.000 0.00 0.00 0.00 3.86
220 221 0.037605 CTTTACGCCGTTCCTCACCT 60.038 55.000 0.00 0.00 0.00 4.00
221 222 1.203052 CTTTACGCCGTTCCTCACCTA 59.797 52.381 0.00 0.00 0.00 3.08
222 223 1.477553 TTACGCCGTTCCTCACCTAT 58.522 50.000 0.00 0.00 0.00 2.57
223 224 1.477553 TACGCCGTTCCTCACCTATT 58.522 50.000 0.00 0.00 0.00 1.73
224 225 0.175073 ACGCCGTTCCTCACCTATTC 59.825 55.000 0.00 0.00 0.00 1.75
225 226 0.529992 CGCCGTTCCTCACCTATTCC 60.530 60.000 0.00 0.00 0.00 3.01
226 227 0.831307 GCCGTTCCTCACCTATTCCT 59.169 55.000 0.00 0.00 0.00 3.36
227 228 2.037144 GCCGTTCCTCACCTATTCCTA 58.963 52.381 0.00 0.00 0.00 2.94
228 229 2.036089 GCCGTTCCTCACCTATTCCTAG 59.964 54.545 0.00 0.00 0.00 3.02
238 239 3.214696 CCTATTCCTAGGCCCTGTTTG 57.785 52.381 2.96 0.00 38.29 2.93
239 240 2.158608 CCTATTCCTAGGCCCTGTTTGG 60.159 54.545 2.96 0.00 38.29 3.28
240 241 1.681229 ATTCCTAGGCCCTGTTTGGA 58.319 50.000 2.96 0.00 38.35 3.53
241 242 1.681229 TTCCTAGGCCCTGTTTGGAT 58.319 50.000 2.96 0.00 38.35 3.41
242 243 1.681229 TCCTAGGCCCTGTTTGGATT 58.319 50.000 2.96 0.00 38.35 3.01
243 244 1.564348 TCCTAGGCCCTGTTTGGATTC 59.436 52.381 2.96 0.00 38.35 2.52
244 245 1.284785 CCTAGGCCCTGTTTGGATTCA 59.715 52.381 0.00 0.00 38.35 2.57
245 246 2.091665 CCTAGGCCCTGTTTGGATTCAT 60.092 50.000 0.00 0.00 38.35 2.57
246 247 3.138283 CCTAGGCCCTGTTTGGATTCATA 59.862 47.826 0.00 0.00 38.35 2.15
247 248 3.303351 AGGCCCTGTTTGGATTCATAG 57.697 47.619 0.00 0.00 38.35 2.23
248 249 2.091665 AGGCCCTGTTTGGATTCATAGG 60.092 50.000 0.00 0.00 38.35 2.57
249 250 2.358195 GGCCCTGTTTGGATTCATAGGT 60.358 50.000 0.00 0.00 38.35 3.08
250 251 3.365472 GCCCTGTTTGGATTCATAGGTT 58.635 45.455 0.00 0.00 38.35 3.50
251 252 4.532834 GCCCTGTTTGGATTCATAGGTTA 58.467 43.478 0.00 0.00 38.35 2.85
252 253 4.580580 GCCCTGTTTGGATTCATAGGTTAG 59.419 45.833 0.00 0.00 38.35 2.34
253 254 5.631481 GCCCTGTTTGGATTCATAGGTTAGA 60.631 44.000 0.00 0.00 38.35 2.10
254 255 6.058183 CCCTGTTTGGATTCATAGGTTAGAG 58.942 44.000 0.00 0.00 38.35 2.43
255 256 6.353082 CCCTGTTTGGATTCATAGGTTAGAGT 60.353 42.308 0.00 0.00 38.35 3.24
256 257 7.112779 CCTGTTTGGATTCATAGGTTAGAGTT 58.887 38.462 0.00 0.00 38.35 3.01
257 258 8.265055 CCTGTTTGGATTCATAGGTTAGAGTTA 58.735 37.037 0.00 0.00 38.35 2.24
258 259 9.319143 CTGTTTGGATTCATAGGTTAGAGTTAG 57.681 37.037 0.00 0.00 0.00 2.34
259 260 8.822805 TGTTTGGATTCATAGGTTAGAGTTAGT 58.177 33.333 0.00 0.00 0.00 2.24
260 261 9.668497 GTTTGGATTCATAGGTTAGAGTTAGTT 57.332 33.333 0.00 0.00 0.00 2.24
262 263 9.667107 TTGGATTCATAGGTTAGAGTTAGTTTG 57.333 33.333 0.00 0.00 0.00 2.93
263 264 8.265055 TGGATTCATAGGTTAGAGTTAGTTTGG 58.735 37.037 0.00 0.00 0.00 3.28
264 265 7.715686 GGATTCATAGGTTAGAGTTAGTTTGGG 59.284 40.741 0.00 0.00 0.00 4.12
265 266 7.563724 TTCATAGGTTAGAGTTAGTTTGGGT 57.436 36.000 0.00 0.00 0.00 4.51
266 267 7.563724 TCATAGGTTAGAGTTAGTTTGGGTT 57.436 36.000 0.00 0.00 0.00 4.11
267 268 8.669055 TCATAGGTTAGAGTTAGTTTGGGTTA 57.331 34.615 0.00 0.00 0.00 2.85
268 269 8.755977 TCATAGGTTAGAGTTAGTTTGGGTTAG 58.244 37.037 0.00 0.00 0.00 2.34
269 270 8.755977 CATAGGTTAGAGTTAGTTTGGGTTAGA 58.244 37.037 0.00 0.00 0.00 2.10
270 271 7.809880 AGGTTAGAGTTAGTTTGGGTTAGAT 57.190 36.000 0.00 0.00 0.00 1.98
271 272 8.215954 AGGTTAGAGTTAGTTTGGGTTAGATT 57.784 34.615 0.00 0.00 0.00 2.40
272 273 8.101419 AGGTTAGAGTTAGTTTGGGTTAGATTG 58.899 37.037 0.00 0.00 0.00 2.67
273 274 7.336176 GGTTAGAGTTAGTTTGGGTTAGATTGG 59.664 40.741 0.00 0.00 0.00 3.16
274 275 6.697641 AGAGTTAGTTTGGGTTAGATTGGA 57.302 37.500 0.00 0.00 0.00 3.53
275 276 6.473758 AGAGTTAGTTTGGGTTAGATTGGAC 58.526 40.000 0.00 0.00 0.00 4.02
276 277 6.272558 AGAGTTAGTTTGGGTTAGATTGGACT 59.727 38.462 0.00 0.00 0.00 3.85
277 278 6.473758 AGTTAGTTTGGGTTAGATTGGACTC 58.526 40.000 0.00 0.00 0.00 3.36
278 279 4.993705 AGTTTGGGTTAGATTGGACTCA 57.006 40.909 0.00 0.00 0.00 3.41
279 280 5.319043 AGTTTGGGTTAGATTGGACTCAA 57.681 39.130 0.00 0.00 34.61 3.02
280 281 5.070685 AGTTTGGGTTAGATTGGACTCAAC 58.929 41.667 0.00 0.00 36.07 3.18
281 282 4.993705 TTGGGTTAGATTGGACTCAACT 57.006 40.909 0.00 0.00 31.63 3.16
282 283 6.043938 AGTTTGGGTTAGATTGGACTCAACTA 59.956 38.462 0.00 0.00 36.07 2.24
283 284 6.442541 TTGGGTTAGATTGGACTCAACTAA 57.557 37.500 0.00 0.00 31.63 2.24
284 285 5.801380 TGGGTTAGATTGGACTCAACTAAC 58.199 41.667 0.00 0.00 40.96 2.34
286 287 5.183969 GGTTAGATTGGACTCAACTAACCC 58.816 45.833 22.42 13.88 45.94 4.11
287 288 5.280317 GGTTAGATTGGACTCAACTAACCCA 60.280 44.000 22.42 0.00 45.94 4.51
288 289 4.993705 AGATTGGACTCAACTAACCCAA 57.006 40.909 0.00 0.00 40.65 4.12
289 290 5.319043 AGATTGGACTCAACTAACCCAAA 57.681 39.130 0.00 0.00 39.91 3.28
290 291 5.701224 AGATTGGACTCAACTAACCCAAAA 58.299 37.500 0.00 0.00 39.91 2.44
291 292 6.133356 AGATTGGACTCAACTAACCCAAAAA 58.867 36.000 0.00 0.00 39.91 1.94
292 293 6.782494 AGATTGGACTCAACTAACCCAAAAAT 59.218 34.615 0.00 0.00 39.91 1.82
293 294 7.947890 AGATTGGACTCAACTAACCCAAAAATA 59.052 33.333 0.00 0.00 39.91 1.40
294 295 8.664669 ATTGGACTCAACTAACCCAAAAATAT 57.335 30.769 0.00 0.00 39.91 1.28
295 296 7.696992 TGGACTCAACTAACCCAAAAATATC 57.303 36.000 0.00 0.00 0.00 1.63
296 297 6.661805 TGGACTCAACTAACCCAAAAATATCC 59.338 38.462 0.00 0.00 0.00 2.59
297 298 6.661805 GGACTCAACTAACCCAAAAATATCCA 59.338 38.462 0.00 0.00 0.00 3.41
298 299 7.177744 GGACTCAACTAACCCAAAAATATCCAA 59.822 37.037 0.00 0.00 0.00 3.53
299 300 8.485578 ACTCAACTAACCCAAAAATATCCAAA 57.514 30.769 0.00 0.00 0.00 3.28
300 301 8.364894 ACTCAACTAACCCAAAAATATCCAAAC 58.635 33.333 0.00 0.00 0.00 2.93
301 302 8.251383 TCAACTAACCCAAAAATATCCAAACA 57.749 30.769 0.00 0.00 0.00 2.83
302 303 8.364142 TCAACTAACCCAAAAATATCCAAACAG 58.636 33.333 0.00 0.00 0.00 3.16
303 304 7.239763 ACTAACCCAAAAATATCCAAACAGG 57.760 36.000 0.00 0.00 39.47 4.00
315 316 3.827722 TCCAAACAGGAGGGTTAGTTTG 58.172 45.455 9.27 9.27 46.23 2.93
317 318 2.890945 CAAACAGGAGGGTTAGTTTGGG 59.109 50.000 8.55 0.00 44.17 4.12
318 319 1.829138 ACAGGAGGGTTAGTTTGGGT 58.171 50.000 0.00 0.00 0.00 4.51
319 320 2.141067 ACAGGAGGGTTAGTTTGGGTT 58.859 47.619 0.00 0.00 0.00 4.11
320 321 3.329277 ACAGGAGGGTTAGTTTGGGTTA 58.671 45.455 0.00 0.00 0.00 2.85
321 322 3.329814 ACAGGAGGGTTAGTTTGGGTTAG 59.670 47.826 0.00 0.00 0.00 2.34
322 323 3.585732 CAGGAGGGTTAGTTTGGGTTAGA 59.414 47.826 0.00 0.00 0.00 2.10
323 324 4.227527 CAGGAGGGTTAGTTTGGGTTAGAT 59.772 45.833 0.00 0.00 0.00 1.98
324 325 4.227527 AGGAGGGTTAGTTTGGGTTAGATG 59.772 45.833 0.00 0.00 0.00 2.90
325 326 3.945921 GAGGGTTAGTTTGGGTTAGATGC 59.054 47.826 0.00 0.00 0.00 3.91
326 327 3.332485 AGGGTTAGTTTGGGTTAGATGCA 59.668 43.478 0.00 0.00 0.00 3.96
327 328 4.017499 AGGGTTAGTTTGGGTTAGATGCAT 60.017 41.667 0.00 0.00 0.00 3.96
328 329 4.338400 GGGTTAGTTTGGGTTAGATGCATC 59.662 45.833 19.37 19.37 0.00 3.91
329 330 5.193679 GGTTAGTTTGGGTTAGATGCATCT 58.806 41.667 30.85 30.85 40.86 2.90
330 331 6.354130 GGTTAGTTTGGGTTAGATGCATCTA 58.646 40.000 28.69 28.69 38.32 1.98
331 332 6.826741 GGTTAGTTTGGGTTAGATGCATCTAA 59.173 38.462 34.91 34.91 44.63 2.10
340 341 5.645056 TTAGATGCATCTAACCCATCCAA 57.355 39.130 34.91 18.66 42.66 3.53
341 342 4.524802 AGATGCATCTAACCCATCCAAA 57.475 40.909 27.73 0.00 36.82 3.28
342 343 4.870636 AGATGCATCTAACCCATCCAAAA 58.129 39.130 27.73 0.00 36.82 2.44
343 344 5.271598 AGATGCATCTAACCCATCCAAAAA 58.728 37.500 27.73 0.00 36.82 1.94
364 365 7.693969 AAAAATCTAACTCACCCAAGAGATG 57.306 36.000 0.00 0.00 38.98 2.90
365 366 6.380079 AAATCTAACTCACCCAAGAGATGT 57.620 37.500 0.00 0.00 38.98 3.06
366 367 6.380079 AATCTAACTCACCCAAGAGATGTT 57.620 37.500 0.00 0.00 38.98 2.71
367 368 5.825593 TCTAACTCACCCAAGAGATGTTT 57.174 39.130 0.00 0.00 38.98 2.83
368 369 6.187727 TCTAACTCACCCAAGAGATGTTTT 57.812 37.500 0.00 0.00 38.98 2.43
369 370 6.601332 TCTAACTCACCCAAGAGATGTTTTT 58.399 36.000 0.00 0.00 38.98 1.94
388 389 3.412237 TTTGGGTTAGTTCTTCTCGGG 57.588 47.619 0.00 0.00 0.00 5.14
389 390 2.314071 TGGGTTAGTTCTTCTCGGGA 57.686 50.000 0.00 0.00 0.00 5.14
390 391 1.897802 TGGGTTAGTTCTTCTCGGGAC 59.102 52.381 0.00 0.00 0.00 4.46
391 392 1.206610 GGGTTAGTTCTTCTCGGGACC 59.793 57.143 0.00 0.00 0.00 4.46
392 393 1.897802 GGTTAGTTCTTCTCGGGACCA 59.102 52.381 0.00 0.00 0.00 4.02
393 394 2.500504 GGTTAGTTCTTCTCGGGACCAT 59.499 50.000 0.00 0.00 0.00 3.55
394 395 3.703052 GGTTAGTTCTTCTCGGGACCATA 59.297 47.826 0.00 0.00 0.00 2.74
395 396 4.161001 GGTTAGTTCTTCTCGGGACCATAA 59.839 45.833 0.00 0.00 0.00 1.90
396 397 5.337813 GGTTAGTTCTTCTCGGGACCATAAA 60.338 44.000 0.00 0.00 0.00 1.40
397 398 4.903045 AGTTCTTCTCGGGACCATAAAA 57.097 40.909 0.00 0.00 0.00 1.52
398 399 5.237236 AGTTCTTCTCGGGACCATAAAAA 57.763 39.130 0.00 0.00 0.00 1.94
421 422 7.761651 AAAAACATGTTTTTCTCTTGCTCTC 57.238 32.000 33.39 0.00 46.30 3.20
422 423 4.739046 ACATGTTTTTCTCTTGCTCTCG 57.261 40.909 0.00 0.00 0.00 4.04
423 424 3.058639 ACATGTTTTTCTCTTGCTCTCGC 60.059 43.478 0.00 0.00 0.00 5.03
424 425 1.873591 TGTTTTTCTCTTGCTCTCGCC 59.126 47.619 0.00 0.00 34.43 5.54
425 426 1.136224 GTTTTTCTCTTGCTCTCGCCG 60.136 52.381 0.00 0.00 34.43 6.46
426 427 1.291877 TTTTCTCTTGCTCTCGCCGC 61.292 55.000 0.00 0.00 34.43 6.53
427 428 2.434658 TTTCTCTTGCTCTCGCCGCA 62.435 55.000 0.00 0.00 35.22 5.69
428 429 2.825726 TTCTCTTGCTCTCGCCGCAG 62.826 60.000 0.00 0.00 38.80 5.18
433 434 4.887987 GCTCTCGCCGCAGCAGAT 62.888 66.667 3.34 0.00 39.83 2.90
434 435 2.657944 CTCTCGCCGCAGCAGATC 60.658 66.667 0.00 0.00 39.83 2.75
435 436 4.212913 TCTCGCCGCAGCAGATCC 62.213 66.667 0.00 0.00 39.83 3.36
439 440 4.925861 GCCGCAGCAGATCCCTCC 62.926 72.222 0.00 0.00 39.53 4.30
440 441 4.247380 CCGCAGCAGATCCCTCCC 62.247 72.222 0.00 0.00 0.00 4.30
441 442 4.247380 CGCAGCAGATCCCTCCCC 62.247 72.222 0.00 0.00 0.00 4.81
442 443 3.092511 GCAGCAGATCCCTCCCCA 61.093 66.667 0.00 0.00 0.00 4.96
443 444 2.914289 CAGCAGATCCCTCCCCAC 59.086 66.667 0.00 0.00 0.00 4.61
444 445 2.367512 AGCAGATCCCTCCCCACC 60.368 66.667 0.00 0.00 0.00 4.61
445 446 2.367512 GCAGATCCCTCCCCACCT 60.368 66.667 0.00 0.00 0.00 4.00
446 447 2.447714 GCAGATCCCTCCCCACCTC 61.448 68.421 0.00 0.00 0.00 3.85
447 448 1.768077 CAGATCCCTCCCCACCTCC 60.768 68.421 0.00 0.00 0.00 4.30
448 449 1.949449 AGATCCCTCCCCACCTCCT 60.949 63.158 0.00 0.00 0.00 3.69
449 450 1.460497 GATCCCTCCCCACCTCCTC 60.460 68.421 0.00 0.00 0.00 3.71
450 451 3.396822 ATCCCTCCCCACCTCCTCG 62.397 68.421 0.00 0.00 0.00 4.63
451 452 4.075793 CCCTCCCCACCTCCTCGA 62.076 72.222 0.00 0.00 0.00 4.04
452 453 2.038975 CCTCCCCACCTCCTCGAA 59.961 66.667 0.00 0.00 0.00 3.71
453 454 2.060980 CCTCCCCACCTCCTCGAAG 61.061 68.421 0.00 0.00 0.00 3.79
454 455 2.683933 TCCCCACCTCCTCGAAGC 60.684 66.667 0.00 0.00 0.00 3.86
455 456 2.685380 CCCCACCTCCTCGAAGCT 60.685 66.667 0.00 0.00 0.00 3.74
456 457 2.294078 CCCCACCTCCTCGAAGCTT 61.294 63.158 0.00 0.00 0.00 3.74
457 458 1.219393 CCCACCTCCTCGAAGCTTC 59.781 63.158 16.84 16.84 0.00 3.86
458 459 1.261238 CCCACCTCCTCGAAGCTTCT 61.261 60.000 23.50 0.37 0.00 2.85
459 460 0.174617 CCACCTCCTCGAAGCTTCTC 59.825 60.000 23.50 0.00 0.00 2.87
460 461 0.179150 CACCTCCTCGAAGCTTCTCG 60.179 60.000 23.50 13.05 40.25 4.04
461 462 0.609681 ACCTCCTCGAAGCTTCTCGT 60.610 55.000 23.50 7.78 39.84 4.18
462 463 0.099791 CCTCCTCGAAGCTTCTCGTC 59.900 60.000 23.50 0.00 39.84 4.20
463 464 0.099791 CTCCTCGAAGCTTCTCGTCC 59.900 60.000 23.50 0.00 39.84 4.79
464 465 0.322636 TCCTCGAAGCTTCTCGTCCT 60.323 55.000 23.50 0.00 39.84 3.85
465 466 0.099791 CCTCGAAGCTTCTCGTCCTC 59.900 60.000 23.50 0.00 39.84 3.71
466 467 1.091537 CTCGAAGCTTCTCGTCCTCT 58.908 55.000 23.50 0.00 39.84 3.69
467 468 1.063469 CTCGAAGCTTCTCGTCCTCTC 59.937 57.143 23.50 0.00 39.84 3.20
468 469 0.099791 CGAAGCTTCTCGTCCTCTCC 59.900 60.000 23.50 0.00 34.08 3.71
469 470 0.458260 GAAGCTTCTCGTCCTCTCCC 59.542 60.000 19.44 0.00 0.00 4.30
470 471 0.040499 AAGCTTCTCGTCCTCTCCCT 59.960 55.000 0.00 0.00 0.00 4.20
471 472 0.395173 AGCTTCTCGTCCTCTCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
472 473 1.388837 GCTTCTCGTCCTCTCCCTCC 61.389 65.000 0.00 0.00 0.00 4.30
473 474 0.753848 CTTCTCGTCCTCTCCCTCCC 60.754 65.000 0.00 0.00 0.00 4.30
474 475 1.215679 TTCTCGTCCTCTCCCTCCCT 61.216 60.000 0.00 0.00 0.00 4.20
475 476 1.152839 CTCGTCCTCTCCCTCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
476 477 2.123640 CGTCCTCTCCCTCCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
477 478 2.284151 GTCCTCTCCCTCCCTCCC 59.716 72.222 0.00 0.00 0.00 4.30
478 479 2.133201 TCCTCTCCCTCCCTCCCT 59.867 66.667 0.00 0.00 0.00 4.20
479 480 2.015726 TCCTCTCCCTCCCTCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
480 481 2.018086 CCTCTCCCTCCCTCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
481 482 1.541672 CTCTCCCTCCCTCCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
482 483 2.197324 CTCCCTCCCTCCCTCTCG 59.803 72.222 0.00 0.00 0.00 4.04
483 484 4.144727 TCCCTCCCTCCCTCTCGC 62.145 72.222 0.00 0.00 0.00 5.03
484 485 4.465446 CCCTCCCTCCCTCTCGCA 62.465 72.222 0.00 0.00 0.00 5.10
485 486 3.151022 CCTCCCTCCCTCTCGCAC 61.151 72.222 0.00 0.00 0.00 5.34
486 487 3.151022 CTCCCTCCCTCTCGCACC 61.151 72.222 0.00 0.00 0.00 5.01
508 509 4.719369 GTGAAGACGCCTCGCCGT 62.719 66.667 0.00 0.00 45.30 5.68
509 510 3.057548 TGAAGACGCCTCGCCGTA 61.058 61.111 0.00 0.00 42.24 4.02
510 511 2.412112 GAAGACGCCTCGCCGTAT 59.588 61.111 0.00 0.00 42.24 3.06
511 512 1.657794 GAAGACGCCTCGCCGTATC 60.658 63.158 0.00 0.00 42.24 2.24
512 513 3.135056 AAGACGCCTCGCCGTATCC 62.135 63.158 0.00 0.00 42.24 2.59
513 514 4.977126 GACGCCTCGCCGTATCCG 62.977 72.222 0.00 0.00 42.24 4.18
521 522 4.664677 GCCGTATCCGCGCTCCAT 62.665 66.667 5.56 0.00 0.00 3.41
522 523 2.430921 CCGTATCCGCGCTCCATC 60.431 66.667 5.56 0.00 0.00 3.51
523 524 2.645567 CGTATCCGCGCTCCATCT 59.354 61.111 5.56 0.00 0.00 2.90
524 525 1.583495 CCGTATCCGCGCTCCATCTA 61.583 60.000 5.56 0.00 0.00 1.98
525 526 0.240145 CGTATCCGCGCTCCATCTAA 59.760 55.000 5.56 0.00 0.00 2.10
526 527 1.699343 GTATCCGCGCTCCATCTAAC 58.301 55.000 5.56 0.00 0.00 2.34
527 528 1.269998 GTATCCGCGCTCCATCTAACT 59.730 52.381 5.56 0.00 0.00 2.24
528 529 0.315568 ATCCGCGCTCCATCTAACTC 59.684 55.000 5.56 0.00 0.00 3.01
529 530 0.752009 TCCGCGCTCCATCTAACTCT 60.752 55.000 5.56 0.00 0.00 3.24
530 531 0.952280 CCGCGCTCCATCTAACTCTA 59.048 55.000 5.56 0.00 0.00 2.43
531 532 1.335142 CCGCGCTCCATCTAACTCTAC 60.335 57.143 5.56 0.00 0.00 2.59
532 533 1.335142 CGCGCTCCATCTAACTCTACC 60.335 57.143 5.56 0.00 0.00 3.18
533 534 1.681793 GCGCTCCATCTAACTCTACCA 59.318 52.381 0.00 0.00 0.00 3.25
534 535 2.297597 GCGCTCCATCTAACTCTACCAT 59.702 50.000 0.00 0.00 0.00 3.55
535 536 3.612955 GCGCTCCATCTAACTCTACCATC 60.613 52.174 0.00 0.00 0.00 3.51
536 537 3.057174 CGCTCCATCTAACTCTACCATCC 60.057 52.174 0.00 0.00 0.00 3.51
537 538 3.898123 GCTCCATCTAACTCTACCATCCA 59.102 47.826 0.00 0.00 0.00 3.41
538 539 4.345257 GCTCCATCTAACTCTACCATCCAA 59.655 45.833 0.00 0.00 0.00 3.53
539 540 5.163301 GCTCCATCTAACTCTACCATCCAAA 60.163 44.000 0.00 0.00 0.00 3.28
540 541 6.235231 TCCATCTAACTCTACCATCCAAAC 57.765 41.667 0.00 0.00 0.00 2.93
541 542 5.724370 TCCATCTAACTCTACCATCCAAACA 59.276 40.000 0.00 0.00 0.00 2.83
542 543 5.817816 CCATCTAACTCTACCATCCAAACAC 59.182 44.000 0.00 0.00 0.00 3.32
543 544 5.416271 TCTAACTCTACCATCCAAACACC 57.584 43.478 0.00 0.00 0.00 4.16
544 545 5.091552 TCTAACTCTACCATCCAAACACCT 58.908 41.667 0.00 0.00 0.00 4.00
545 546 3.983044 ACTCTACCATCCAAACACCTC 57.017 47.619 0.00 0.00 0.00 3.85
546 547 3.521727 ACTCTACCATCCAAACACCTCT 58.478 45.455 0.00 0.00 0.00 3.69
547 548 3.910627 ACTCTACCATCCAAACACCTCTT 59.089 43.478 0.00 0.00 0.00 2.85
548 549 4.351111 ACTCTACCATCCAAACACCTCTTT 59.649 41.667 0.00 0.00 0.00 2.52
549 550 4.651778 TCTACCATCCAAACACCTCTTTG 58.348 43.478 0.00 0.00 0.00 2.77
551 552 1.273327 CCATCCAAACACCTCTTTGGC 59.727 52.381 5.91 0.00 46.88 4.52
552 553 2.242043 CATCCAAACACCTCTTTGGCT 58.758 47.619 5.91 0.00 46.88 4.75
553 554 3.420893 CATCCAAACACCTCTTTGGCTA 58.579 45.455 5.91 0.00 46.88 3.93
554 555 3.586470 TCCAAACACCTCTTTGGCTAA 57.414 42.857 5.91 0.00 46.88 3.09
555 556 3.904717 TCCAAACACCTCTTTGGCTAAA 58.095 40.909 5.91 0.00 46.88 1.85
556 557 3.888930 TCCAAACACCTCTTTGGCTAAAG 59.111 43.478 15.89 15.89 46.88 1.85
557 558 3.636764 CCAAACACCTCTTTGGCTAAAGT 59.363 43.478 20.43 1.46 42.89 2.66
558 559 4.099419 CCAAACACCTCTTTGGCTAAAGTT 59.901 41.667 20.43 6.84 42.89 2.66
559 560 5.300792 CCAAACACCTCTTTGGCTAAAGTTA 59.699 40.000 20.43 3.38 42.89 2.24
560 561 6.438763 CAAACACCTCTTTGGCTAAAGTTAG 58.561 40.000 20.43 12.23 43.04 2.34
561 562 5.306114 ACACCTCTTTGGCTAAAGTTAGT 57.694 39.130 20.43 13.70 43.04 2.24
562 563 5.691896 ACACCTCTTTGGCTAAAGTTAGTT 58.308 37.500 20.43 0.00 43.04 2.24
563 564 6.127101 ACACCTCTTTGGCTAAAGTTAGTTT 58.873 36.000 20.43 8.33 43.04 2.66
564 565 7.284820 ACACCTCTTTGGCTAAAGTTAGTTTA 58.715 34.615 20.43 0.63 43.04 2.01
566 567 6.940867 ACCTCTTTGGCTAAAGTTAGTTTAGG 59.059 38.462 20.43 18.69 45.53 2.69
567 568 6.374613 CCTCTTTGGCTAAAGTTAGTTTAGGG 59.625 42.308 20.43 7.65 45.53 3.53
568 569 6.844829 TCTTTGGCTAAAGTTAGTTTAGGGT 58.155 36.000 20.43 0.00 45.53 4.34
569 570 7.292319 TCTTTGGCTAAAGTTAGTTTAGGGTT 58.708 34.615 20.43 0.00 45.53 4.11
570 571 8.439172 TCTTTGGCTAAAGTTAGTTTAGGGTTA 58.561 33.333 20.43 0.00 45.53 2.85
571 572 8.625786 TTTGGCTAAAGTTAGTTTAGGGTTAG 57.374 34.615 17.95 0.00 45.53 2.34
572 573 7.320384 TGGCTAAAGTTAGTTTAGGGTTAGT 57.680 36.000 17.95 0.00 45.53 2.24
573 574 7.748677 TGGCTAAAGTTAGTTTAGGGTTAGTT 58.251 34.615 17.95 0.00 45.53 2.24
574 575 7.879677 TGGCTAAAGTTAGTTTAGGGTTAGTTC 59.120 37.037 17.95 2.64 45.53 3.01
575 576 7.879677 GGCTAAAGTTAGTTTAGGGTTAGTTCA 59.120 37.037 17.95 0.00 45.53 3.18
576 577 8.933807 GCTAAAGTTAGTTTAGGGTTAGTTCAG 58.066 37.037 17.95 0.00 45.53 3.02
577 578 9.433153 CTAAAGTTAGTTTAGGGTTAGTTCAGG 57.567 37.037 10.78 0.00 42.82 3.86
578 579 6.370186 AGTTAGTTTAGGGTTAGTTCAGGG 57.630 41.667 0.00 0.00 0.00 4.45
579 580 5.848369 AGTTAGTTTAGGGTTAGTTCAGGGT 59.152 40.000 0.00 0.00 0.00 4.34
580 581 6.331042 AGTTAGTTTAGGGTTAGTTCAGGGTT 59.669 38.462 0.00 0.00 0.00 4.11
581 582 7.513781 AGTTAGTTTAGGGTTAGTTCAGGGTTA 59.486 37.037 0.00 0.00 0.00 2.85
582 583 6.370186 AGTTTAGGGTTAGTTCAGGGTTAG 57.630 41.667 0.00 0.00 0.00 2.34
583 584 6.086775 AGTTTAGGGTTAGTTCAGGGTTAGA 58.913 40.000 0.00 0.00 0.00 2.10
584 585 6.559921 AGTTTAGGGTTAGTTCAGGGTTAGAA 59.440 38.462 0.00 0.00 0.00 2.10
585 586 7.239143 AGTTTAGGGTTAGTTCAGGGTTAGAAT 59.761 37.037 0.00 0.00 0.00 2.40
586 587 5.695424 AGGGTTAGTTCAGGGTTAGAATC 57.305 43.478 0.00 0.00 0.00 2.52
587 588 5.351405 AGGGTTAGTTCAGGGTTAGAATCT 58.649 41.667 0.00 0.00 0.00 2.40
588 589 6.509386 AGGGTTAGTTCAGGGTTAGAATCTA 58.491 40.000 0.00 0.00 0.00 1.98
589 590 6.964086 AGGGTTAGTTCAGGGTTAGAATCTAA 59.036 38.462 0.00 0.00 0.00 2.10
590 591 7.046652 GGGTTAGTTCAGGGTTAGAATCTAAC 58.953 42.308 21.48 21.48 37.95 2.34
591 592 7.092979 GGGTTAGTTCAGGGTTAGAATCTAACT 60.093 40.741 26.42 13.45 38.26 2.24
592 593 7.980662 GGTTAGTTCAGGGTTAGAATCTAACTC 59.019 40.741 26.42 24.35 38.26 3.01
593 594 8.751242 GTTAGTTCAGGGTTAGAATCTAACTCT 58.249 37.037 25.42 25.42 38.68 3.24
594 595 9.986157 TTAGTTCAGGGTTAGAATCTAACTCTA 57.014 33.333 28.99 16.07 36.19 2.43
595 596 8.896722 AGTTCAGGGTTAGAATCTAACTCTAA 57.103 34.615 28.99 17.07 36.19 2.10
607 608 9.403583 AGAATCTAACTCTAACCTCTAACTGAG 57.596 37.037 0.00 0.00 42.30 3.35
608 609 9.181061 GAATCTAACTCTAACCTCTAACTGAGT 57.819 37.037 0.00 0.00 41.11 3.41
609 610 9.536510 AATCTAACTCTAACCTCTAACTGAGTT 57.463 33.333 2.37 2.37 43.96 3.01
622 623 7.336161 TCTAACTGAGTTAGAGTATCCAAGC 57.664 40.000 26.45 0.00 46.18 4.01
623 624 6.890268 TCTAACTGAGTTAGAGTATCCAAGCA 59.110 38.462 26.45 4.73 46.18 3.91
624 625 5.590530 ACTGAGTTAGAGTATCCAAGCAG 57.409 43.478 0.00 0.00 33.66 4.24
625 626 4.404073 ACTGAGTTAGAGTATCCAAGCAGG 59.596 45.833 0.00 0.00 33.66 4.85
626 627 3.706594 TGAGTTAGAGTATCCAAGCAGGG 59.293 47.826 0.00 0.00 38.24 4.45
627 628 3.707102 GAGTTAGAGTATCCAAGCAGGGT 59.293 47.826 0.00 0.00 38.24 4.34
647 648 1.557099 TAGTCCTACACCTGCACCTG 58.443 55.000 0.00 0.00 0.00 4.00
675 685 0.834612 TCCTCTCTCTCTCTCGGACC 59.165 60.000 0.00 0.00 0.00 4.46
700 710 2.701780 CGCACTGCTCCCTCTACGT 61.702 63.158 0.00 0.00 0.00 3.57
711 721 0.463295 CCTCTACGTCCTCGCCTACA 60.463 60.000 0.00 0.00 41.18 2.74
714 724 0.098376 CTACGTCCTCGCCTACACAC 59.902 60.000 0.00 0.00 41.18 3.82
753 775 3.620300 CTTGCACCACGCCATGCTG 62.620 63.158 6.88 0.00 42.55 4.41
845 904 2.814913 AATTTCCAGCGTCCCCGTCC 62.815 60.000 0.00 0.00 36.15 4.79
849 908 3.382832 CAGCGTCCCCGTCCTCTT 61.383 66.667 0.00 0.00 36.15 2.85
881 940 2.033757 CACCAAGCCTGCTCTGCT 59.966 61.111 0.00 0.00 41.89 4.24
882 941 2.039405 CACCAAGCCTGCTCTGCTC 61.039 63.158 0.00 0.00 38.34 4.26
883 942 2.222727 ACCAAGCCTGCTCTGCTCT 61.223 57.895 0.00 0.00 38.34 4.09
884 943 1.449956 CCAAGCCTGCTCTGCTCTC 60.450 63.158 0.00 0.00 38.34 3.20
885 944 1.449956 CAAGCCTGCTCTGCTCTCC 60.450 63.158 0.00 0.00 38.34 3.71
889 948 1.994507 CCTGCTCTGCTCTCCCCTT 60.995 63.158 0.00 0.00 0.00 3.95
896 955 0.829990 CTGCTCTCCCCTTCTCTTCC 59.170 60.000 0.00 0.00 0.00 3.46
919 978 3.244112 CCCTTGTCTTACTTGAACCGTCT 60.244 47.826 0.00 0.00 0.00 4.18
925 1002 2.599408 TACTTGAACCGTCTCCCTCT 57.401 50.000 0.00 0.00 0.00 3.69
2030 2120 0.037975 GACGTCCTCGCCAAAGGTAA 60.038 55.000 3.51 0.00 41.18 2.85
2032 2122 0.320073 CGTCCTCGCCAAAGGTAACA 60.320 55.000 0.00 0.00 37.69 2.41
2034 2124 2.433436 GTCCTCGCCAAAGGTAACATT 58.567 47.619 0.00 0.00 37.69 2.71
2042 2132 4.669197 CGCCAAAGGTAACATTTTCTCTCG 60.669 45.833 0.00 0.00 41.41 4.04
2048 2138 5.070685 AGGTAACATTTTCTCTCGCCTTTT 58.929 37.500 0.00 0.00 41.41 2.27
2049 2139 5.048713 AGGTAACATTTTCTCTCGCCTTTTG 60.049 40.000 0.00 0.00 41.41 2.44
2051 2141 4.918810 ACATTTTCTCTCGCCTTTTGTT 57.081 36.364 0.00 0.00 0.00 2.83
2053 2143 5.281727 ACATTTTCTCTCGCCTTTTGTTTC 58.718 37.500 0.00 0.00 0.00 2.78
2055 2145 2.234300 TCTCTCGCCTTTTGTTTCGT 57.766 45.000 0.00 0.00 0.00 3.85
2056 2146 2.132762 TCTCTCGCCTTTTGTTTCGTC 58.867 47.619 0.00 0.00 0.00 4.20
2057 2147 2.135933 CTCTCGCCTTTTGTTTCGTCT 58.864 47.619 0.00 0.00 0.00 4.18
2058 2148 3.005050 TCTCTCGCCTTTTGTTTCGTCTA 59.995 43.478 0.00 0.00 0.00 2.59
2059 2149 3.054878 TCTCGCCTTTTGTTTCGTCTAC 58.945 45.455 0.00 0.00 0.00 2.59
2060 2150 3.057734 CTCGCCTTTTGTTTCGTCTACT 58.942 45.455 0.00 0.00 0.00 2.57
2061 2151 4.022935 TCTCGCCTTTTGTTTCGTCTACTA 60.023 41.667 0.00 0.00 0.00 1.82
2062 2152 4.232221 TCGCCTTTTGTTTCGTCTACTAG 58.768 43.478 0.00 0.00 0.00 2.57
2091 2201 0.668401 AATCGACGAACCAACGGTCC 60.668 55.000 0.00 0.00 33.12 4.46
2113 2223 2.420129 GGATCGTATGGTTTCAGGTGCT 60.420 50.000 0.00 0.00 0.00 4.40
2399 2509 2.022934 CCCTCGTCTCCTACAGGTAAC 58.977 57.143 0.00 0.00 36.34 2.50
2457 2574 3.678289 TCATCACTCACTCCACATTTGG 58.322 45.455 0.00 0.00 45.56 3.28
2459 2576 3.576078 TCACTCACTCCACATTTGGTT 57.424 42.857 0.00 0.00 44.35 3.67
2477 2594 3.248266 GGTTTGCTGATTGATCTTGTGC 58.752 45.455 0.00 0.00 0.00 4.57
2478 2595 2.905959 TTGCTGATTGATCTTGTGCG 57.094 45.000 0.00 0.00 0.00 5.34
2480 2597 0.248377 GCTGATTGATCTTGTGCGCC 60.248 55.000 4.18 0.00 0.00 6.53
2605 2722 2.289072 GGTTTGCACAGCTCTGACTCTA 60.289 50.000 3.60 0.00 0.00 2.43
2610 2727 2.415357 GCACAGCTCTGACTCTACACTC 60.415 54.545 3.60 0.00 0.00 3.51
2629 2746 3.560068 ACTCTTCCTGTAAAACTGTTGCG 59.440 43.478 0.00 0.00 0.00 4.85
2630 2747 3.799366 TCTTCCTGTAAAACTGTTGCGA 58.201 40.909 0.00 0.00 0.00 5.10
2631 2748 3.807622 TCTTCCTGTAAAACTGTTGCGAG 59.192 43.478 0.00 0.00 0.00 5.03
2632 2749 3.188159 TCCTGTAAAACTGTTGCGAGT 57.812 42.857 0.00 0.00 0.00 4.18
2633 2750 2.869801 TCCTGTAAAACTGTTGCGAGTG 59.130 45.455 0.00 0.00 0.00 3.51
2634 2751 2.032030 CCTGTAAAACTGTTGCGAGTGG 60.032 50.000 0.00 0.00 0.00 4.00
2720 2837 3.423154 GGGAACAAGCTGGCGTCG 61.423 66.667 0.00 0.00 0.00 5.12
2747 2864 1.003233 GGCTGTGAGGTTCCTGGTC 60.003 63.158 0.00 0.00 0.00 4.02
2750 2867 2.047179 GTGAGGTTCCTGGTCGGC 60.047 66.667 0.00 0.00 0.00 5.54
2837 2962 2.708861 TGTTCAGGTACATCCCAGTTGT 59.291 45.455 0.00 0.00 36.75 3.32
2848 2973 2.571548 CCAGTTGTGGGCCTTGATC 58.428 57.895 4.53 0.00 40.67 2.92
2849 2974 1.308069 CCAGTTGTGGGCCTTGATCG 61.308 60.000 4.53 0.00 40.67 3.69
2864 2989 3.071874 TGATCGGCAAGGAGAAAATGT 57.928 42.857 0.00 0.00 0.00 2.71
2865 2990 4.214986 TGATCGGCAAGGAGAAAATGTA 57.785 40.909 0.00 0.00 0.00 2.29
2866 2991 4.191544 TGATCGGCAAGGAGAAAATGTAG 58.808 43.478 0.00 0.00 0.00 2.74
2867 2992 2.985896 TCGGCAAGGAGAAAATGTAGG 58.014 47.619 0.00 0.00 0.00 3.18
2868 2993 1.401905 CGGCAAGGAGAAAATGTAGGC 59.598 52.381 0.00 0.00 0.00 3.93
2869 2994 1.751351 GGCAAGGAGAAAATGTAGGCC 59.249 52.381 0.00 0.00 0.00 5.19
2870 2995 1.401905 GCAAGGAGAAAATGTAGGCCG 59.598 52.381 0.00 0.00 0.00 6.13
2871 2996 1.401905 CAAGGAGAAAATGTAGGCCGC 59.598 52.381 0.00 0.00 0.00 6.53
2874 2999 0.733150 GAGAAAATGTAGGCCGCCAC 59.267 55.000 13.15 8.52 0.00 5.01
2895 3020 5.187967 CCACCTAGAGAAAATGTAGTGACCT 59.812 44.000 0.00 0.00 0.00 3.85
2927 3052 1.183030 TTGCATTGCAGGCTGCTCTT 61.183 50.000 36.50 20.13 45.31 2.85
2930 3055 1.748122 ATTGCAGGCTGCTCTTCCG 60.748 57.895 36.50 0.00 45.31 4.30
2972 3097 1.246649 TCGCCAAGGAGTACAACGTA 58.753 50.000 0.00 0.00 0.00 3.57
3006 3131 1.067669 TCAGCACAGCGTATGATCTCC 59.932 52.381 0.00 0.00 0.00 3.71
3036 3161 4.940654 ACCTCTATCTTTCTTTCTTGCTGC 59.059 41.667 0.00 0.00 0.00 5.25
3101 3226 4.519906 TTCCCACCTTTTCTCTTCTTGT 57.480 40.909 0.00 0.00 0.00 3.16
3102 3227 5.640158 TTCCCACCTTTTCTCTTCTTGTA 57.360 39.130 0.00 0.00 0.00 2.41
3137 3262 3.794717 CATCATCCACTCAAGTCAGAGG 58.205 50.000 0.00 0.00 39.97 3.69
3144 3269 3.134458 CACTCAAGTCAGAGGAAACACC 58.866 50.000 0.00 0.00 39.97 4.16
3240 3372 2.448926 TGCTGCTGCGTCTACTTTAA 57.551 45.000 11.21 0.00 43.34 1.52
3292 3599 6.183361 TGGTATTCCTGACATGATGATGGAAT 60.183 38.462 22.95 22.95 43.83 3.01
3423 3750 2.290134 ACTGACAGCAGCATCATTCAGT 60.290 45.455 1.25 1.99 46.26 3.41
3427 3754 1.596260 CAGCAGCATCATTCAGTACCG 59.404 52.381 0.00 0.00 0.00 4.02
3437 3764 2.211250 TTCAGTACCGGTGCTCTAGT 57.789 50.000 23.48 0.00 0.00 2.57
3479 3812 0.968405 GCTTGCTTGGTTGATCCCAA 59.032 50.000 3.73 3.73 42.16 4.12
3565 3906 3.170717 TGATGGAAGGAGTCGGTTTAGT 58.829 45.455 0.00 0.00 0.00 2.24
3665 4006 9.342308 TCATTGAGATTTGTAACTCTTTCACTT 57.658 29.630 0.00 0.00 34.65 3.16
3666 4007 9.604626 CATTGAGATTTGTAACTCTTTCACTTC 57.395 33.333 0.00 0.00 34.65 3.01
3667 4008 7.408132 TGAGATTTGTAACTCTTTCACTTCG 57.592 36.000 0.00 0.00 34.65 3.79
3668 4009 6.984474 TGAGATTTGTAACTCTTTCACTTCGT 59.016 34.615 0.00 0.00 34.65 3.85
3669 4010 7.169308 TGAGATTTGTAACTCTTTCACTTCGTC 59.831 37.037 0.00 0.00 34.65 4.20
3690 4031 5.802451 CGTCTTCATTCATCTATCGTATGGG 59.198 44.000 0.00 0.00 0.00 4.00
3735 4088 9.791820 TGAAATTCATTGCATGTCTTTATACTG 57.208 29.630 0.00 0.00 0.00 2.74
3763 4116 2.146920 TTGTTTTCCCTTGGAACGGT 57.853 45.000 0.00 0.00 41.87 4.83
3764 4117 1.394618 TGTTTTCCCTTGGAACGGTG 58.605 50.000 0.00 0.00 41.87 4.94
3765 4118 0.671796 GTTTTCCCTTGGAACGGTGG 59.328 55.000 0.00 0.00 41.87 4.61
3766 4119 0.259356 TTTTCCCTTGGAACGGTGGT 59.741 50.000 0.00 0.00 41.87 4.16
3768 4121 2.282180 CCCTTGGAACGGTGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
3770 4123 1.378762 CCTTGGAACGGTGGTGGAT 59.621 57.895 0.00 0.00 0.00 3.41
3771 4124 0.676782 CCTTGGAACGGTGGTGGATC 60.677 60.000 0.00 0.00 0.00 3.36
3772 4125 0.036164 CTTGGAACGGTGGTGGATCA 59.964 55.000 0.00 0.00 0.00 2.92
3779 4143 1.482593 ACGGTGGTGGATCAGAGAATC 59.517 52.381 0.00 0.00 0.00 2.52
3798 4162 7.281040 AGAATCTTTTGTGCTTTCATGAAGA 57.719 32.000 8.41 0.00 37.57 2.87
3812 4176 4.289342 TCATGAAGAAAAACGTGCATGTG 58.711 39.130 13.39 0.00 35.75 3.21
3989 4367 2.939103 CTCGAGTGGAAATCAATGGGTC 59.061 50.000 3.62 0.00 0.00 4.46
3990 4368 2.304470 TCGAGTGGAAATCAATGGGTCA 59.696 45.455 0.00 0.00 0.00 4.02
3991 4369 3.081061 CGAGTGGAAATCAATGGGTCAA 58.919 45.455 0.00 0.00 0.00 3.18
4053 4436 2.413837 GCGTTGGCTTTCTCTTGAGTA 58.586 47.619 0.00 0.00 35.83 2.59
4099 4483 2.295885 GCAGCCTAGTGAAATGATGCT 58.704 47.619 0.00 0.00 0.00 3.79
4101 4485 2.877168 CAGCCTAGTGAAATGATGCTCC 59.123 50.000 0.00 0.00 0.00 4.70
4107 4531 3.972133 AGTGAAATGATGCTCCATTCCA 58.028 40.909 4.96 0.00 35.86 3.53
4114 4538 0.481567 ATGCTCCATTCCATGAGGGG 59.518 55.000 0.00 0.00 37.22 4.79
4116 4540 2.004408 GCTCCATTCCATGAGGGGCT 62.004 60.000 10.01 0.00 45.53 5.19
4120 4544 2.190538 CCATTCCATGAGGGGCTTTTT 58.809 47.619 0.00 0.00 37.22 1.94
4148 4572 6.969993 TTTAACTTAGAAAGGGCACACAAT 57.030 33.333 0.00 0.00 0.00 2.71
4190 4614 0.107361 TCCTCGTAGCTGTCGGATCA 60.107 55.000 11.91 0.00 0.00 2.92
4250 4674 4.546570 GACGACCAGGAAATTCCTTTTTG 58.453 43.478 12.63 8.39 46.91 2.44
4251 4675 3.243737 ACGACCAGGAAATTCCTTTTTGC 60.244 43.478 12.63 0.00 46.91 3.68
4252 4676 3.243704 CGACCAGGAAATTCCTTTTTGCA 60.244 43.478 12.63 0.00 46.91 4.08
4260 4691 6.813152 AGGAAATTCCTTTTTGCAATATGACG 59.187 34.615 9.08 0.00 46.91 4.35
4295 4726 6.186957 TCATACATGGCAAGTCCTTTACAAT 58.813 36.000 0.00 0.00 35.26 2.71
4312 4743 0.823356 AATGGCGTGGCAAGTTCAGT 60.823 50.000 0.00 0.00 0.00 3.41
4329 4760 5.069516 AGTTCAGTTGTTTTGGCATGAGAAT 59.930 36.000 0.00 0.00 0.00 2.40
4345 4776 3.367932 TGAGAATTCTTGCGTTCGCTAAG 59.632 43.478 17.63 17.05 0.00 2.18
4374 4806 1.535462 CCCAGCGAACGTCAGATTTTT 59.465 47.619 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.305769 CAGGAGTATAGCTTGCTTGCTAG 58.694 47.826 14.46 0.00 46.89 3.42
14 15 1.139853 GCTGGTGCAGGAGTATAGCTT 59.860 52.381 0.00 0.00 39.41 3.74
46 47 2.123854 CTGGCCTCCTGCATGCAT 60.124 61.111 22.97 0.00 43.89 3.96
118 119 2.520536 GGAGGTGTGGAGTGTGGCT 61.521 63.158 0.00 0.00 0.00 4.75
119 120 2.032681 GGAGGTGTGGAGTGTGGC 59.967 66.667 0.00 0.00 0.00 5.01
120 121 1.705002 TTGGGAGGTGTGGAGTGTGG 61.705 60.000 0.00 0.00 0.00 4.17
121 122 0.535102 GTTGGGAGGTGTGGAGTGTG 60.535 60.000 0.00 0.00 0.00 3.82
122 123 1.837090 GTTGGGAGGTGTGGAGTGT 59.163 57.895 0.00 0.00 0.00 3.55
123 124 1.301716 CGTTGGGAGGTGTGGAGTG 60.302 63.158 0.00 0.00 0.00 3.51
124 125 3.148084 CGTTGGGAGGTGTGGAGT 58.852 61.111 0.00 0.00 0.00 3.85
125 126 2.358737 GCGTTGGGAGGTGTGGAG 60.359 66.667 0.00 0.00 0.00 3.86
126 127 3.948719 GGCGTTGGGAGGTGTGGA 61.949 66.667 0.00 0.00 0.00 4.02
127 128 3.901797 GAGGCGTTGGGAGGTGTGG 62.902 68.421 0.00 0.00 0.00 4.17
180 181 1.002857 AAGGGTGAGATGAAAGGGGG 58.997 55.000 0.00 0.00 0.00 5.40
200 201 1.017701 GGTGAGGAACGGCGTAAAGG 61.018 60.000 15.20 0.00 0.00 3.11
201 202 0.037605 AGGTGAGGAACGGCGTAAAG 60.038 55.000 15.20 0.00 0.00 1.85
202 203 1.255882 TAGGTGAGGAACGGCGTAAA 58.744 50.000 15.20 0.00 0.00 2.01
203 204 1.477553 ATAGGTGAGGAACGGCGTAA 58.522 50.000 15.20 0.00 0.00 3.18
215 216 1.294068 ACAGGGCCTAGGAATAGGTGA 59.706 52.381 14.75 0.00 39.42 4.02
217 218 2.509964 CAAACAGGGCCTAGGAATAGGT 59.490 50.000 14.75 0.00 39.42 3.08
220 221 2.853430 TCCAAACAGGGCCTAGGAATA 58.147 47.619 14.75 0.00 38.24 1.75
221 222 1.681229 TCCAAACAGGGCCTAGGAAT 58.319 50.000 14.75 0.00 38.24 3.01
222 223 1.681229 ATCCAAACAGGGCCTAGGAA 58.319 50.000 14.75 0.00 38.24 3.36
223 224 1.564348 GAATCCAAACAGGGCCTAGGA 59.436 52.381 14.75 12.22 38.24 2.94
224 225 1.284785 TGAATCCAAACAGGGCCTAGG 59.715 52.381 5.28 3.67 38.24 3.02
225 226 2.806945 TGAATCCAAACAGGGCCTAG 57.193 50.000 5.28 3.22 38.24 3.02
226 227 3.138283 CCTATGAATCCAAACAGGGCCTA 59.862 47.826 5.28 0.00 38.24 3.93
227 228 2.091665 CCTATGAATCCAAACAGGGCCT 60.092 50.000 0.00 0.00 38.24 5.19
228 229 2.310538 CCTATGAATCCAAACAGGGCC 58.689 52.381 0.00 0.00 38.24 5.80
229 230 3.018423 ACCTATGAATCCAAACAGGGC 57.982 47.619 0.00 0.00 38.24 5.19
230 231 6.001449 TCTAACCTATGAATCCAAACAGGG 57.999 41.667 0.00 0.00 38.24 4.45
231 232 6.653989 ACTCTAACCTATGAATCCAAACAGG 58.346 40.000 0.00 0.00 39.47 4.00
232 233 9.319143 CTAACTCTAACCTATGAATCCAAACAG 57.681 37.037 0.00 0.00 0.00 3.16
233 234 8.822805 ACTAACTCTAACCTATGAATCCAAACA 58.177 33.333 0.00 0.00 0.00 2.83
234 235 9.668497 AACTAACTCTAACCTATGAATCCAAAC 57.332 33.333 0.00 0.00 0.00 2.93
236 237 9.667107 CAAACTAACTCTAACCTATGAATCCAA 57.333 33.333 0.00 0.00 0.00 3.53
237 238 8.265055 CCAAACTAACTCTAACCTATGAATCCA 58.735 37.037 0.00 0.00 0.00 3.41
238 239 7.715686 CCCAAACTAACTCTAACCTATGAATCC 59.284 40.741 0.00 0.00 0.00 3.01
239 240 8.265764 ACCCAAACTAACTCTAACCTATGAATC 58.734 37.037 0.00 0.00 0.00 2.52
240 241 8.159229 ACCCAAACTAACTCTAACCTATGAAT 57.841 34.615 0.00 0.00 0.00 2.57
241 242 7.563724 ACCCAAACTAACTCTAACCTATGAA 57.436 36.000 0.00 0.00 0.00 2.57
242 243 7.563724 AACCCAAACTAACTCTAACCTATGA 57.436 36.000 0.00 0.00 0.00 2.15
243 244 8.755977 TCTAACCCAAACTAACTCTAACCTATG 58.244 37.037 0.00 0.00 0.00 2.23
244 245 8.906238 TCTAACCCAAACTAACTCTAACCTAT 57.094 34.615 0.00 0.00 0.00 2.57
245 246 8.906238 ATCTAACCCAAACTAACTCTAACCTA 57.094 34.615 0.00 0.00 0.00 3.08
246 247 7.809880 ATCTAACCCAAACTAACTCTAACCT 57.190 36.000 0.00 0.00 0.00 3.50
247 248 7.336176 CCAATCTAACCCAAACTAACTCTAACC 59.664 40.741 0.00 0.00 0.00 2.85
248 249 8.098912 TCCAATCTAACCCAAACTAACTCTAAC 58.901 37.037 0.00 0.00 0.00 2.34
249 250 8.098912 GTCCAATCTAACCCAAACTAACTCTAA 58.901 37.037 0.00 0.00 0.00 2.10
250 251 7.456902 AGTCCAATCTAACCCAAACTAACTCTA 59.543 37.037 0.00 0.00 0.00 2.43
251 252 6.272558 AGTCCAATCTAACCCAAACTAACTCT 59.727 38.462 0.00 0.00 0.00 3.24
252 253 6.473758 AGTCCAATCTAACCCAAACTAACTC 58.526 40.000 0.00 0.00 0.00 3.01
253 254 6.043938 TGAGTCCAATCTAACCCAAACTAACT 59.956 38.462 0.00 0.00 0.00 2.24
254 255 6.235664 TGAGTCCAATCTAACCCAAACTAAC 58.764 40.000 0.00 0.00 0.00 2.34
255 256 6.442541 TGAGTCCAATCTAACCCAAACTAA 57.557 37.500 0.00 0.00 0.00 2.24
256 257 6.043938 AGTTGAGTCCAATCTAACCCAAACTA 59.956 38.462 0.00 0.00 34.39 2.24
257 258 4.993705 TGAGTCCAATCTAACCCAAACT 57.006 40.909 0.00 0.00 0.00 2.66
258 259 5.070685 AGTTGAGTCCAATCTAACCCAAAC 58.929 41.667 0.00 0.00 34.39 2.93
259 260 5.319043 AGTTGAGTCCAATCTAACCCAAA 57.681 39.130 0.00 0.00 34.39 3.28
260 261 4.993705 AGTTGAGTCCAATCTAACCCAA 57.006 40.909 0.00 0.00 34.39 4.12
261 262 5.280317 GGTTAGTTGAGTCCAATCTAACCCA 60.280 44.000 22.09 0.00 45.81 4.51
262 263 5.183969 GGTTAGTTGAGTCCAATCTAACCC 58.816 45.833 22.09 13.49 45.81 4.11
264 265 5.801380 TGGGTTAGTTGAGTCCAATCTAAC 58.199 41.667 14.72 14.72 40.76 2.34
265 266 6.442541 TTGGGTTAGTTGAGTCCAATCTAA 57.557 37.500 0.00 0.00 34.39 2.10
266 267 6.442541 TTTGGGTTAGTTGAGTCCAATCTA 57.557 37.500 0.00 0.00 37.34 1.98
267 268 4.993705 TTGGGTTAGTTGAGTCCAATCT 57.006 40.909 0.00 0.00 34.39 2.40
268 269 6.399639 TTTTTGGGTTAGTTGAGTCCAATC 57.600 37.500 0.00 0.00 37.34 2.67
269 270 6.994421 ATTTTTGGGTTAGTTGAGTCCAAT 57.006 33.333 0.00 0.00 37.34 3.16
270 271 7.177744 GGATATTTTTGGGTTAGTTGAGTCCAA 59.822 37.037 0.00 0.00 35.91 3.53
271 272 6.661805 GGATATTTTTGGGTTAGTTGAGTCCA 59.338 38.462 0.00 0.00 0.00 4.02
272 273 6.661805 TGGATATTTTTGGGTTAGTTGAGTCC 59.338 38.462 0.00 0.00 0.00 3.85
273 274 7.696992 TGGATATTTTTGGGTTAGTTGAGTC 57.303 36.000 0.00 0.00 0.00 3.36
274 275 8.364894 GTTTGGATATTTTTGGGTTAGTTGAGT 58.635 33.333 0.00 0.00 0.00 3.41
275 276 8.364142 TGTTTGGATATTTTTGGGTTAGTTGAG 58.636 33.333 0.00 0.00 0.00 3.02
276 277 8.251383 TGTTTGGATATTTTTGGGTTAGTTGA 57.749 30.769 0.00 0.00 0.00 3.18
277 278 7.602265 CCTGTTTGGATATTTTTGGGTTAGTTG 59.398 37.037 0.00 0.00 38.35 3.16
278 279 7.511028 TCCTGTTTGGATATTTTTGGGTTAGTT 59.489 33.333 0.00 0.00 40.56 2.24
279 280 7.013834 TCCTGTTTGGATATTTTTGGGTTAGT 58.986 34.615 0.00 0.00 40.56 2.24
280 281 7.363793 CCTCCTGTTTGGATATTTTTGGGTTAG 60.364 40.741 0.00 0.00 45.16 2.34
281 282 6.439058 CCTCCTGTTTGGATATTTTTGGGTTA 59.561 38.462 0.00 0.00 45.16 2.85
282 283 5.248248 CCTCCTGTTTGGATATTTTTGGGTT 59.752 40.000 0.00 0.00 45.16 4.11
283 284 4.777366 CCTCCTGTTTGGATATTTTTGGGT 59.223 41.667 0.00 0.00 45.16 4.51
284 285 4.162131 CCCTCCTGTTTGGATATTTTTGGG 59.838 45.833 0.00 0.00 45.16 4.12
285 286 4.777366 ACCCTCCTGTTTGGATATTTTTGG 59.223 41.667 0.00 0.00 45.16 3.28
286 287 6.358974 AACCCTCCTGTTTGGATATTTTTG 57.641 37.500 0.00 0.00 45.16 2.44
287 288 7.246027 ACTAACCCTCCTGTTTGGATATTTTT 58.754 34.615 0.00 0.00 45.16 1.94
288 289 6.800890 ACTAACCCTCCTGTTTGGATATTTT 58.199 36.000 0.00 0.00 45.16 1.82
289 290 6.402981 ACTAACCCTCCTGTTTGGATATTT 57.597 37.500 0.00 0.00 45.16 1.40
290 291 6.402981 AACTAACCCTCCTGTTTGGATATT 57.597 37.500 0.00 0.00 45.16 1.28
291 292 6.187682 CAAACTAACCCTCCTGTTTGGATAT 58.812 40.000 8.90 0.00 45.16 1.63
292 293 5.566469 CAAACTAACCCTCCTGTTTGGATA 58.434 41.667 8.90 0.00 45.16 2.59
293 294 4.407365 CAAACTAACCCTCCTGTTTGGAT 58.593 43.478 8.90 0.00 45.16 3.41
294 295 3.827722 CAAACTAACCCTCCTGTTTGGA 58.172 45.455 8.90 0.00 42.93 3.53
296 297 2.890945 CCCAAACTAACCCTCCTGTTTG 59.109 50.000 9.59 9.59 44.90 2.93
297 298 2.516702 ACCCAAACTAACCCTCCTGTTT 59.483 45.455 0.00 0.00 33.56 2.83
298 299 2.141067 ACCCAAACTAACCCTCCTGTT 58.859 47.619 0.00 0.00 0.00 3.16
299 300 1.829138 ACCCAAACTAACCCTCCTGT 58.171 50.000 0.00 0.00 0.00 4.00
300 301 2.971901 AACCCAAACTAACCCTCCTG 57.028 50.000 0.00 0.00 0.00 3.86
301 302 3.878086 TCTAACCCAAACTAACCCTCCT 58.122 45.455 0.00 0.00 0.00 3.69
302 303 4.524053 CATCTAACCCAAACTAACCCTCC 58.476 47.826 0.00 0.00 0.00 4.30
303 304 3.945921 GCATCTAACCCAAACTAACCCTC 59.054 47.826 0.00 0.00 0.00 4.30
304 305 3.332485 TGCATCTAACCCAAACTAACCCT 59.668 43.478 0.00 0.00 0.00 4.34
305 306 3.692690 TGCATCTAACCCAAACTAACCC 58.307 45.455 0.00 0.00 0.00 4.11
306 307 5.193679 AGATGCATCTAACCCAAACTAACC 58.806 41.667 27.73 0.00 34.85 2.85
307 308 7.859325 TTAGATGCATCTAACCCAAACTAAC 57.141 36.000 34.91 4.14 42.66 2.34
318 319 5.645056 TTGGATGGGTTAGATGCATCTAA 57.355 39.130 34.91 34.91 44.63 2.10
319 320 5.645056 TTTGGATGGGTTAGATGCATCTA 57.355 39.130 28.69 28.69 38.32 1.98
320 321 4.524802 TTTGGATGGGTTAGATGCATCT 57.475 40.909 30.85 30.85 40.86 2.90
321 322 5.596836 TTTTTGGATGGGTTAGATGCATC 57.403 39.130 19.37 19.37 0.00 3.91
340 341 7.234355 ACATCTCTTGGGTGAGTTAGATTTTT 58.766 34.615 0.00 0.00 35.68 1.94
341 342 6.784031 ACATCTCTTGGGTGAGTTAGATTTT 58.216 36.000 0.00 0.00 35.68 1.82
342 343 6.380079 ACATCTCTTGGGTGAGTTAGATTT 57.620 37.500 0.00 0.00 35.68 2.17
343 344 6.380079 AACATCTCTTGGGTGAGTTAGATT 57.620 37.500 0.00 0.00 35.68 2.40
344 345 6.380079 AAACATCTCTTGGGTGAGTTAGAT 57.620 37.500 0.00 0.00 35.68 1.98
345 346 5.825593 AAACATCTCTTGGGTGAGTTAGA 57.174 39.130 0.00 0.00 35.68 2.10
346 347 6.884280 AAAAACATCTCTTGGGTGAGTTAG 57.116 37.500 0.00 0.00 35.68 2.34
366 367 4.139038 CCCGAGAAGAACTAACCCAAAAA 58.861 43.478 0.00 0.00 0.00 1.94
367 368 3.391955 TCCCGAGAAGAACTAACCCAAAA 59.608 43.478 0.00 0.00 0.00 2.44
368 369 2.974099 TCCCGAGAAGAACTAACCCAAA 59.026 45.455 0.00 0.00 0.00 3.28
369 370 2.301009 GTCCCGAGAAGAACTAACCCAA 59.699 50.000 0.00 0.00 0.00 4.12
370 371 1.897802 GTCCCGAGAAGAACTAACCCA 59.102 52.381 0.00 0.00 0.00 4.51
371 372 1.206610 GGTCCCGAGAAGAACTAACCC 59.793 57.143 0.00 0.00 0.00 4.11
372 373 1.897802 TGGTCCCGAGAAGAACTAACC 59.102 52.381 0.00 0.00 0.00 2.85
373 374 3.889520 ATGGTCCCGAGAAGAACTAAC 57.110 47.619 0.00 0.00 0.00 2.34
374 375 6.363167 TTTTATGGTCCCGAGAAGAACTAA 57.637 37.500 0.00 0.00 0.00 2.24
375 376 6.363167 TTTTTATGGTCCCGAGAAGAACTA 57.637 37.500 0.00 0.00 0.00 2.24
376 377 4.903045 TTTTATGGTCCCGAGAAGAACT 57.097 40.909 0.00 0.00 0.00 3.01
398 399 5.973565 CGAGAGCAAGAGAAAAACATGTTTT 59.026 36.000 27.01 27.01 43.88 2.43
399 400 5.514279 CGAGAGCAAGAGAAAAACATGTTT 58.486 37.500 18.13 18.13 0.00 2.83
400 401 5.100751 CGAGAGCAAGAGAAAAACATGTT 57.899 39.130 4.92 4.92 0.00 2.71
401 402 4.739046 CGAGAGCAAGAGAAAAACATGT 57.261 40.909 0.00 0.00 0.00 3.21
417 418 2.657944 GATCTGCTGCGGCGAGAG 60.658 66.667 12.98 6.53 42.25 3.20
418 419 4.212913 GGATCTGCTGCGGCGAGA 62.213 66.667 12.98 16.44 42.25 4.04
422 423 4.925861 GGAGGGATCTGCTGCGGC 62.926 72.222 11.65 11.65 39.26 6.53
423 424 4.247380 GGGAGGGATCTGCTGCGG 62.247 72.222 0.95 0.95 0.00 5.69
424 425 4.247380 GGGGAGGGATCTGCTGCG 62.247 72.222 0.00 0.00 0.00 5.18
425 426 3.092511 TGGGGAGGGATCTGCTGC 61.093 66.667 0.00 0.00 0.00 5.25
426 427 2.750657 GGTGGGGAGGGATCTGCTG 61.751 68.421 0.00 0.00 0.00 4.41
427 428 2.367512 GGTGGGGAGGGATCTGCT 60.368 66.667 0.00 0.00 0.00 4.24
428 429 2.367512 AGGTGGGGAGGGATCTGC 60.368 66.667 0.00 0.00 0.00 4.26
429 430 1.768077 GGAGGTGGGGAGGGATCTG 60.768 68.421 0.00 0.00 0.00 2.90
430 431 1.949449 AGGAGGTGGGGAGGGATCT 60.949 63.158 0.00 0.00 0.00 2.75
431 432 1.460497 GAGGAGGTGGGGAGGGATC 60.460 68.421 0.00 0.00 0.00 3.36
432 433 2.706071 GAGGAGGTGGGGAGGGAT 59.294 66.667 0.00 0.00 0.00 3.85
433 434 4.075793 CGAGGAGGTGGGGAGGGA 62.076 72.222 0.00 0.00 0.00 4.20
434 435 3.618855 TTCGAGGAGGTGGGGAGGG 62.619 68.421 0.00 0.00 0.00 4.30
435 436 2.038975 TTCGAGGAGGTGGGGAGG 59.961 66.667 0.00 0.00 0.00 4.30
436 437 2.726351 GCTTCGAGGAGGTGGGGAG 61.726 68.421 0.00 0.00 0.00 4.30
437 438 2.683933 GCTTCGAGGAGGTGGGGA 60.684 66.667 0.00 0.00 0.00 4.81
438 439 2.245438 GAAGCTTCGAGGAGGTGGGG 62.245 65.000 11.40 0.00 0.00 4.96
439 440 1.219393 GAAGCTTCGAGGAGGTGGG 59.781 63.158 11.40 0.00 0.00 4.61
440 441 0.174617 GAGAAGCTTCGAGGAGGTGG 59.825 60.000 20.43 0.00 0.00 4.61
441 442 0.179150 CGAGAAGCTTCGAGGAGGTG 60.179 60.000 20.43 2.44 43.03 4.00
442 443 0.609681 ACGAGAAGCTTCGAGGAGGT 60.610 55.000 20.43 10.30 43.03 3.85
443 444 0.099791 GACGAGAAGCTTCGAGGAGG 59.900 60.000 20.43 9.72 43.03 4.30
444 445 0.099791 GGACGAGAAGCTTCGAGGAG 59.900 60.000 20.43 13.04 43.03 3.69
445 446 0.322636 AGGACGAGAAGCTTCGAGGA 60.323 55.000 20.43 0.00 43.03 3.71
446 447 0.099791 GAGGACGAGAAGCTTCGAGG 59.900 60.000 20.43 15.29 43.03 4.63
447 448 1.063469 GAGAGGACGAGAAGCTTCGAG 59.937 57.143 20.43 19.25 43.03 4.04
448 449 1.088306 GAGAGGACGAGAAGCTTCGA 58.912 55.000 20.43 0.00 43.03 3.71
449 450 0.099791 GGAGAGGACGAGAAGCTTCG 59.900 60.000 20.43 13.41 45.70 3.79
450 451 0.458260 GGGAGAGGACGAGAAGCTTC 59.542 60.000 19.11 19.11 0.00 3.86
451 452 0.040499 AGGGAGAGGACGAGAAGCTT 59.960 55.000 0.00 0.00 0.00 3.74
452 453 0.395173 GAGGGAGAGGACGAGAAGCT 60.395 60.000 0.00 0.00 0.00 3.74
453 454 1.388837 GGAGGGAGAGGACGAGAAGC 61.389 65.000 0.00 0.00 0.00 3.86
454 455 0.753848 GGGAGGGAGAGGACGAGAAG 60.754 65.000 0.00 0.00 0.00 2.85
455 456 1.215679 AGGGAGGGAGAGGACGAGAA 61.216 60.000 0.00 0.00 0.00 2.87
456 457 1.619975 AGGGAGGGAGAGGACGAGA 60.620 63.158 0.00 0.00 0.00 4.04
457 458 1.152839 GAGGGAGGGAGAGGACGAG 60.153 68.421 0.00 0.00 0.00 4.18
458 459 2.691779 GGAGGGAGGGAGAGGACGA 61.692 68.421 0.00 0.00 0.00 4.20
459 460 2.123640 GGAGGGAGGGAGAGGACG 60.124 72.222 0.00 0.00 0.00 4.79
460 461 2.284151 GGGAGGGAGGGAGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
461 462 2.015726 GAGGGAGGGAGGGAGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
462 463 2.018086 AGAGGGAGGGAGGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
463 464 1.541672 GAGAGGGAGGGAGGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
464 465 2.387772 CGAGAGGGAGGGAGGGAGA 61.388 68.421 0.00 0.00 0.00 3.71
465 466 2.197324 CGAGAGGGAGGGAGGGAG 59.803 72.222 0.00 0.00 0.00 4.30
466 467 4.144727 GCGAGAGGGAGGGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
467 468 4.465446 TGCGAGAGGGAGGGAGGG 62.465 72.222 0.00 0.00 0.00 4.30
468 469 3.151022 GTGCGAGAGGGAGGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
469 470 3.151022 GGTGCGAGAGGGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
491 492 2.609183 ATACGGCGAGGCGTCTTCAC 62.609 60.000 26.94 0.00 0.00 3.18
492 493 2.332362 GATACGGCGAGGCGTCTTCA 62.332 60.000 26.94 11.18 0.00 3.02
493 494 1.657794 GATACGGCGAGGCGTCTTC 60.658 63.158 26.94 20.13 0.00 2.87
494 495 2.412112 GATACGGCGAGGCGTCTT 59.588 61.111 26.94 16.26 0.00 3.01
495 496 3.593794 GGATACGGCGAGGCGTCT 61.594 66.667 26.94 18.17 0.00 4.18
507 508 1.269998 AGTTAGATGGAGCGCGGATAC 59.730 52.381 8.83 0.00 0.00 2.24
508 509 1.540267 GAGTTAGATGGAGCGCGGATA 59.460 52.381 8.83 0.00 0.00 2.59
509 510 0.315568 GAGTTAGATGGAGCGCGGAT 59.684 55.000 8.83 0.00 0.00 4.18
510 511 0.752009 AGAGTTAGATGGAGCGCGGA 60.752 55.000 8.83 0.00 0.00 5.54
511 512 0.952280 TAGAGTTAGATGGAGCGCGG 59.048 55.000 8.83 0.00 0.00 6.46
512 513 1.335142 GGTAGAGTTAGATGGAGCGCG 60.335 57.143 0.00 0.00 0.00 6.86
513 514 1.681793 TGGTAGAGTTAGATGGAGCGC 59.318 52.381 0.00 0.00 0.00 5.92
514 515 3.057174 GGATGGTAGAGTTAGATGGAGCG 60.057 52.174 0.00 0.00 0.00 5.03
515 516 3.898123 TGGATGGTAGAGTTAGATGGAGC 59.102 47.826 0.00 0.00 0.00 4.70
516 517 6.127054 TGTTTGGATGGTAGAGTTAGATGGAG 60.127 42.308 0.00 0.00 0.00 3.86
517 518 5.724370 TGTTTGGATGGTAGAGTTAGATGGA 59.276 40.000 0.00 0.00 0.00 3.41
518 519 5.817816 GTGTTTGGATGGTAGAGTTAGATGG 59.182 44.000 0.00 0.00 0.00 3.51
519 520 5.817816 GGTGTTTGGATGGTAGAGTTAGATG 59.182 44.000 0.00 0.00 0.00 2.90
520 521 5.726793 AGGTGTTTGGATGGTAGAGTTAGAT 59.273 40.000 0.00 0.00 0.00 1.98
521 522 5.091552 AGGTGTTTGGATGGTAGAGTTAGA 58.908 41.667 0.00 0.00 0.00 2.10
522 523 5.187967 AGAGGTGTTTGGATGGTAGAGTTAG 59.812 44.000 0.00 0.00 0.00 2.34
523 524 5.091552 AGAGGTGTTTGGATGGTAGAGTTA 58.908 41.667 0.00 0.00 0.00 2.24
524 525 3.910627 AGAGGTGTTTGGATGGTAGAGTT 59.089 43.478 0.00 0.00 0.00 3.01
525 526 3.521727 AGAGGTGTTTGGATGGTAGAGT 58.478 45.455 0.00 0.00 0.00 3.24
526 527 4.559862 AAGAGGTGTTTGGATGGTAGAG 57.440 45.455 0.00 0.00 0.00 2.43
527 528 4.651778 CAAAGAGGTGTTTGGATGGTAGA 58.348 43.478 0.00 0.00 34.34 2.59
536 537 4.918810 ACTTTAGCCAAAGAGGTGTTTG 57.081 40.909 11.75 0.00 43.32 2.93
537 538 6.127101 ACTAACTTTAGCCAAAGAGGTGTTT 58.873 36.000 11.75 0.00 43.32 2.83
538 539 5.691896 ACTAACTTTAGCCAAAGAGGTGTT 58.308 37.500 11.75 0.00 43.32 3.32
539 540 5.306114 ACTAACTTTAGCCAAAGAGGTGT 57.694 39.130 11.75 2.37 43.32 4.16
540 541 6.635030 AAACTAACTTTAGCCAAAGAGGTG 57.365 37.500 11.75 1.82 43.32 4.00
541 542 6.940867 CCTAAACTAACTTTAGCCAAAGAGGT 59.059 38.462 11.75 4.29 43.32 3.85
542 543 6.374613 CCCTAAACTAACTTTAGCCAAAGAGG 59.625 42.308 11.75 5.61 43.32 3.69
543 544 6.940867 ACCCTAAACTAACTTTAGCCAAAGAG 59.059 38.462 11.75 2.00 43.32 2.85
544 545 6.844829 ACCCTAAACTAACTTTAGCCAAAGA 58.155 36.000 11.75 0.00 43.32 2.52
545 546 7.520451 AACCCTAAACTAACTTTAGCCAAAG 57.480 36.000 2.86 2.86 45.63 2.77
546 547 8.219868 ACTAACCCTAAACTAACTTTAGCCAAA 58.780 33.333 0.00 0.00 40.07 3.28
547 548 7.748677 ACTAACCCTAAACTAACTTTAGCCAA 58.251 34.615 0.00 0.00 40.07 4.52
548 549 7.320384 ACTAACCCTAAACTAACTTTAGCCA 57.680 36.000 0.00 0.00 40.07 4.75
549 550 7.879677 TGAACTAACCCTAAACTAACTTTAGCC 59.120 37.037 0.00 0.00 40.07 3.93
550 551 8.837788 TGAACTAACCCTAAACTAACTTTAGC 57.162 34.615 0.00 0.00 40.07 3.09
551 552 9.433153 CCTGAACTAACCCTAAACTAACTTTAG 57.567 37.037 0.00 0.00 40.80 1.85
552 553 8.377799 CCCTGAACTAACCCTAAACTAACTTTA 58.622 37.037 0.00 0.00 0.00 1.85
553 554 7.147248 ACCCTGAACTAACCCTAAACTAACTTT 60.147 37.037 0.00 0.00 0.00 2.66
554 555 6.331042 ACCCTGAACTAACCCTAAACTAACTT 59.669 38.462 0.00 0.00 0.00 2.66
555 556 5.848369 ACCCTGAACTAACCCTAAACTAACT 59.152 40.000 0.00 0.00 0.00 2.24
556 557 6.119240 ACCCTGAACTAACCCTAAACTAAC 57.881 41.667 0.00 0.00 0.00 2.34
557 558 6.768641 AACCCTGAACTAACCCTAAACTAA 57.231 37.500 0.00 0.00 0.00 2.24
558 559 7.248237 TCTAACCCTGAACTAACCCTAAACTA 58.752 38.462 0.00 0.00 0.00 2.24
559 560 6.086775 TCTAACCCTGAACTAACCCTAAACT 58.913 40.000 0.00 0.00 0.00 2.66
560 561 6.364568 TCTAACCCTGAACTAACCCTAAAC 57.635 41.667 0.00 0.00 0.00 2.01
561 562 7.460082 AGATTCTAACCCTGAACTAACCCTAAA 59.540 37.037 0.00 0.00 0.00 1.85
562 563 6.964086 AGATTCTAACCCTGAACTAACCCTAA 59.036 38.462 0.00 0.00 0.00 2.69
563 564 6.509386 AGATTCTAACCCTGAACTAACCCTA 58.491 40.000 0.00 0.00 0.00 3.53
564 565 5.351405 AGATTCTAACCCTGAACTAACCCT 58.649 41.667 0.00 0.00 0.00 4.34
565 566 5.695424 AGATTCTAACCCTGAACTAACCC 57.305 43.478 0.00 0.00 0.00 4.11
566 567 7.849160 AGTTAGATTCTAACCCTGAACTAACC 58.151 38.462 25.81 4.05 37.89 2.85
567 568 8.751242 AGAGTTAGATTCTAACCCTGAACTAAC 58.249 37.037 25.81 0.00 37.72 2.34
568 569 8.896722 AGAGTTAGATTCTAACCCTGAACTAA 57.103 34.615 25.81 0.00 0.00 2.24
569 570 9.986157 TTAGAGTTAGATTCTAACCCTGAACTA 57.014 33.333 25.81 17.71 33.43 2.24
570 571 8.751242 GTTAGAGTTAGATTCTAACCCTGAACT 58.249 37.037 25.81 18.40 45.71 3.01
571 572 8.929827 GTTAGAGTTAGATTCTAACCCTGAAC 57.070 38.462 25.81 20.67 45.71 3.18
581 582 9.403583 CTCAGTTAGAGGTTAGAGTTAGATTCT 57.596 37.037 0.00 0.00 40.84 2.40
583 584 9.536510 AACTCAGTTAGAGGTTAGAGTTAGATT 57.463 33.333 0.00 0.00 43.38 2.40
599 600 7.101652 TGCTTGGATACTCTAACTCAGTTAG 57.898 40.000 17.42 17.42 44.65 2.34
600 601 6.096987 CCTGCTTGGATACTCTAACTCAGTTA 59.903 42.308 0.00 0.00 38.35 2.24
601 602 5.105146 CCTGCTTGGATACTCTAACTCAGTT 60.105 44.000 0.00 0.00 38.35 3.16
602 603 4.404073 CCTGCTTGGATACTCTAACTCAGT 59.596 45.833 0.00 0.00 38.35 3.41
603 604 4.202202 CCCTGCTTGGATACTCTAACTCAG 60.202 50.000 0.00 0.00 38.35 3.35
604 605 3.706594 CCCTGCTTGGATACTCTAACTCA 59.293 47.826 0.00 0.00 38.35 3.41
605 606 3.707102 ACCCTGCTTGGATACTCTAACTC 59.293 47.826 0.00 0.00 38.35 3.01
606 607 3.725634 ACCCTGCTTGGATACTCTAACT 58.274 45.455 0.00 0.00 38.35 2.24
607 608 4.489306 AACCCTGCTTGGATACTCTAAC 57.511 45.455 0.00 0.00 38.35 2.34
608 609 5.278061 ACTAACCCTGCTTGGATACTCTAA 58.722 41.667 0.00 0.00 38.35 2.10
609 610 4.880164 ACTAACCCTGCTTGGATACTCTA 58.120 43.478 0.00 0.00 38.35 2.43
610 611 3.707102 GACTAACCCTGCTTGGATACTCT 59.293 47.826 0.00 0.00 38.35 3.24
611 612 3.181464 GGACTAACCCTGCTTGGATACTC 60.181 52.174 0.00 0.00 38.35 2.59
612 613 2.772515 GGACTAACCCTGCTTGGATACT 59.227 50.000 0.00 0.00 38.35 2.12
613 614 2.772515 AGGACTAACCCTGCTTGGATAC 59.227 50.000 0.00 0.00 40.05 2.24
614 615 3.130734 AGGACTAACCCTGCTTGGATA 57.869 47.619 0.00 0.00 40.05 2.59
615 616 1.972588 AGGACTAACCCTGCTTGGAT 58.027 50.000 0.00 0.00 40.05 3.41
616 617 2.185387 GTAGGACTAACCCTGCTTGGA 58.815 52.381 0.00 0.00 40.05 3.53
617 618 1.906574 TGTAGGACTAACCCTGCTTGG 59.093 52.381 0.00 0.00 39.33 3.61
618 619 2.354805 GGTGTAGGACTAACCCTGCTTG 60.355 54.545 0.00 0.00 39.33 4.01
619 620 1.907255 GGTGTAGGACTAACCCTGCTT 59.093 52.381 0.00 0.00 39.33 3.91
620 621 1.078989 AGGTGTAGGACTAACCCTGCT 59.921 52.381 0.00 0.00 39.33 4.24
621 622 1.207329 CAGGTGTAGGACTAACCCTGC 59.793 57.143 10.73 0.00 40.05 4.85
622 623 1.207329 GCAGGTGTAGGACTAACCCTG 59.793 57.143 15.85 15.85 40.05 4.45
623 624 1.203262 TGCAGGTGTAGGACTAACCCT 60.203 52.381 0.00 0.00 40.05 4.34
624 625 1.066358 GTGCAGGTGTAGGACTAACCC 60.066 57.143 0.00 0.00 40.05 4.11
625 626 1.066358 GGTGCAGGTGTAGGACTAACC 60.066 57.143 0.00 0.00 39.35 2.85
626 627 1.900486 AGGTGCAGGTGTAGGACTAAC 59.100 52.381 0.00 0.00 0.00 2.34
627 628 1.899814 CAGGTGCAGGTGTAGGACTAA 59.100 52.381 0.00 0.00 0.00 2.24
647 648 1.076044 AGAGAGAGGAGGAGCAGGC 60.076 63.158 0.00 0.00 0.00 4.85
675 685 2.328099 GGGAGCAGTGCGTTTCCTG 61.328 63.158 18.41 0.00 0.00 3.86
700 710 1.532078 TGTGGTGTGTAGGCGAGGA 60.532 57.895 0.00 0.00 0.00 3.71
711 721 3.055094 GGGTAATCTGATCACTGTGGTGT 60.055 47.826 8.11 0.00 43.41 4.16
714 724 3.708631 AGAGGGTAATCTGATCACTGTGG 59.291 47.826 8.11 0.00 0.00 4.17
729 739 2.345991 GCGTGGTGCAAGAGGGTA 59.654 61.111 0.00 0.00 45.45 3.69
837 896 0.606604 CGAAGAAAAGAGGACGGGGA 59.393 55.000 0.00 0.00 0.00 4.81
845 904 5.050490 TGGTGAAGAAGACGAAGAAAAGAG 58.950 41.667 0.00 0.00 0.00 2.85
846 905 5.018539 TGGTGAAGAAGACGAAGAAAAGA 57.981 39.130 0.00 0.00 0.00 2.52
847 906 5.734855 TTGGTGAAGAAGACGAAGAAAAG 57.265 39.130 0.00 0.00 0.00 2.27
848 907 4.035208 GCTTGGTGAAGAAGACGAAGAAAA 59.965 41.667 0.00 0.00 32.54 2.29
849 908 3.560068 GCTTGGTGAAGAAGACGAAGAAA 59.440 43.478 0.00 0.00 32.54 2.52
881 940 1.162951 AGGGGGAAGAGAAGGGGAGA 61.163 60.000 0.00 0.00 0.00 3.71
882 941 0.253394 AAGGGGGAAGAGAAGGGGAG 60.253 60.000 0.00 0.00 0.00 4.30
883 942 0.550147 CAAGGGGGAAGAGAAGGGGA 60.550 60.000 0.00 0.00 0.00 4.81
884 943 0.846870 ACAAGGGGGAAGAGAAGGGG 60.847 60.000 0.00 0.00 0.00 4.79
885 944 0.621082 GACAAGGGGGAAGAGAAGGG 59.379 60.000 0.00 0.00 0.00 3.95
889 948 3.562108 AGTAAGACAAGGGGGAAGAGA 57.438 47.619 0.00 0.00 0.00 3.10
896 955 2.224450 ACGGTTCAAGTAAGACAAGGGG 60.224 50.000 0.00 0.00 0.00 4.79
919 978 2.596851 GCTGGGTCAAGCAGAGGGA 61.597 63.158 0.00 0.00 43.01 4.20
925 1002 3.137385 AAGGCAGCTGGGTCAAGCA 62.137 57.895 17.12 0.00 46.08 3.91
992 1073 3.274586 CGGTGATCATGGCCGCTG 61.275 66.667 9.97 0.00 38.99 5.18
1278 1362 2.050350 CCAGTCGAGGGAGCCGTTA 61.050 63.158 0.00 0.00 0.00 3.18
2030 2120 4.918810 AACAAAAGGCGAGAGAAAATGT 57.081 36.364 0.00 0.00 0.00 2.71
2032 2122 4.036380 ACGAAACAAAAGGCGAGAGAAAAT 59.964 37.500 0.00 0.00 0.00 1.82
2034 2124 2.940410 ACGAAACAAAAGGCGAGAGAAA 59.060 40.909 0.00 0.00 0.00 2.52
2042 2132 3.181533 CGCTAGTAGACGAAACAAAAGGC 60.182 47.826 0.00 0.00 0.00 4.35
2048 2138 0.171903 GGCCGCTAGTAGACGAAACA 59.828 55.000 13.35 0.00 0.00 2.83
2049 2139 0.864797 CGGCCGCTAGTAGACGAAAC 60.865 60.000 14.67 5.04 0.00 2.78
2051 2141 1.709147 GACGGCCGCTAGTAGACGAA 61.709 60.000 28.58 0.00 0.00 3.85
2053 2143 2.327244 GACGGCCGCTAGTAGACG 59.673 66.667 28.58 7.72 0.00 4.18
2055 2145 0.754217 ATTGGACGGCCGCTAGTAGA 60.754 55.000 28.58 5.22 36.79 2.59
2056 2146 0.318784 GATTGGACGGCCGCTAGTAG 60.319 60.000 28.58 0.00 36.79 2.57
2057 2147 1.737816 GATTGGACGGCCGCTAGTA 59.262 57.895 28.58 7.63 36.79 1.82
2058 2148 2.499685 GATTGGACGGCCGCTAGT 59.500 61.111 28.58 12.96 36.79 2.57
2059 2149 2.658593 CGATTGGACGGCCGCTAG 60.659 66.667 28.58 5.97 36.79 3.42
2060 2150 3.142162 TCGATTGGACGGCCGCTA 61.142 61.111 28.58 13.71 36.79 4.26
2061 2151 4.814294 GTCGATTGGACGGCCGCT 62.814 66.667 28.58 13.18 35.61 5.52
2091 2201 2.201732 CACCTGAAACCATACGATCCG 58.798 52.381 0.00 0.00 0.00 4.18
2113 2223 1.086067 CGTACTCGTCGTAGGCCTGA 61.086 60.000 17.99 0.93 0.00 3.86
2421 2538 8.636213 AGTGAGTGATGAAGAAACAAATTGATT 58.364 29.630 0.00 0.00 0.00 2.57
2422 2539 8.174733 AGTGAGTGATGAAGAAACAAATTGAT 57.825 30.769 0.00 0.00 0.00 2.57
2423 2540 7.255242 GGAGTGAGTGATGAAGAAACAAATTGA 60.255 37.037 0.00 0.00 0.00 2.57
2434 2551 5.292671 CAAATGTGGAGTGAGTGATGAAG 57.707 43.478 0.00 0.00 0.00 3.02
2457 2574 2.912967 CGCACAAGATCAATCAGCAAAC 59.087 45.455 0.00 0.00 0.00 2.93
2459 2576 1.135603 GCGCACAAGATCAATCAGCAA 60.136 47.619 0.30 0.00 0.00 3.91
2489 2606 1.075374 CAATCCCCCACCTGAAGTTGA 59.925 52.381 0.00 0.00 0.00 3.18
2545 2662 1.675310 CAAGCCCTGCATCCGACAA 60.675 57.895 0.00 0.00 0.00 3.18
2605 2722 4.335594 GCAACAGTTTTACAGGAAGAGTGT 59.664 41.667 0.00 0.00 37.39 3.55
2610 2727 3.560068 ACTCGCAACAGTTTTACAGGAAG 59.440 43.478 0.00 0.00 0.00 3.46
2634 2751 2.146073 AAAACATGAGCACGGCTGGC 62.146 55.000 0.00 0.00 39.88 4.85
2720 2837 1.878522 CCTCACAGCCATCGCGTAC 60.879 63.158 5.77 0.00 41.18 3.67
2846 2971 3.545703 CCTACATTTTCTCCTTGCCGAT 58.454 45.455 0.00 0.00 0.00 4.18
2848 2973 1.401905 GCCTACATTTTCTCCTTGCCG 59.598 52.381 0.00 0.00 0.00 5.69
2849 2974 1.751351 GGCCTACATTTTCTCCTTGCC 59.249 52.381 0.00 0.00 0.00 4.52
2851 2976 1.401905 GCGGCCTACATTTTCTCCTTG 59.598 52.381 0.00 0.00 0.00 3.61
2854 2979 0.393808 TGGCGGCCTACATTTTCTCC 60.394 55.000 21.46 0.00 0.00 3.71
2855 2980 0.733150 GTGGCGGCCTACATTTTCTC 59.267 55.000 21.46 0.00 0.00 2.87
2858 2983 0.621609 TAGGTGGCGGCCTACATTTT 59.378 50.000 21.46 6.51 39.94 1.82
2860 2985 0.689745 TCTAGGTGGCGGCCTACATT 60.690 55.000 21.46 10.77 39.94 2.71
2861 2986 1.075525 TCTAGGTGGCGGCCTACAT 60.076 57.895 21.46 15.91 39.94 2.29
2862 2987 1.756950 CTCTAGGTGGCGGCCTACA 60.757 63.158 21.46 0.00 39.94 2.74
2863 2988 1.041447 TTCTCTAGGTGGCGGCCTAC 61.041 60.000 21.46 15.75 39.94 3.18
2864 2989 0.324923 TTTCTCTAGGTGGCGGCCTA 60.325 55.000 21.46 3.28 39.94 3.93
2865 2990 1.198759 TTTTCTCTAGGTGGCGGCCT 61.199 55.000 21.46 2.03 42.43 5.19
2866 2991 0.107165 ATTTTCTCTAGGTGGCGGCC 60.107 55.000 13.32 13.32 0.00 6.13
2867 2992 1.017387 CATTTTCTCTAGGTGGCGGC 58.983 55.000 0.00 0.00 0.00 6.53
2868 2993 2.403252 ACATTTTCTCTAGGTGGCGG 57.597 50.000 0.00 0.00 0.00 6.13
2869 2994 3.865745 CACTACATTTTCTCTAGGTGGCG 59.134 47.826 0.00 0.00 0.00 5.69
2870 2995 4.870991 GTCACTACATTTTCTCTAGGTGGC 59.129 45.833 0.00 0.00 0.00 5.01
2871 2996 5.187967 AGGTCACTACATTTTCTCTAGGTGG 59.812 44.000 0.00 0.00 0.00 4.61
2874 2999 8.696374 TCATAAGGTCACTACATTTTCTCTAGG 58.304 37.037 0.00 0.00 30.96 3.02
2895 3020 6.647481 GCCTGCAATGCAAATTCATATCATAA 59.353 34.615 9.92 0.00 38.41 1.90
2927 3052 2.435938 GGCACGATTCCTTGCGGA 60.436 61.111 0.00 0.00 38.31 5.54
2930 3055 1.803289 GAAGGGCACGATTCCTTGC 59.197 57.895 11.33 0.00 42.85 4.01
2972 3097 2.224843 TGTGCTGAGAATGTTGGGATGT 60.225 45.455 0.00 0.00 0.00 3.06
3006 3131 8.930760 CAAGAAAGAAAGATAGAGGTGTGTTAG 58.069 37.037 0.00 0.00 0.00 2.34
3036 3161 6.176975 TGACTAAAATTGATAACAGTGGCG 57.823 37.500 0.00 0.00 0.00 5.69
3101 3226 6.043590 AGTGGATGATGCTCTCCAATTACATA 59.956 38.462 0.00 0.00 42.99 2.29
3102 3227 5.068636 GTGGATGATGCTCTCCAATTACAT 58.931 41.667 0.00 0.00 42.99 2.29
3137 3262 5.890334 TCATGAAAAGTCACAAGGTGTTTC 58.110 37.500 0.00 1.12 36.31 2.78
3144 3269 7.555554 AGGATAGGAATCATGAAAAGTCACAAG 59.444 37.037 0.00 0.00 36.31 3.16
3145 3270 7.405292 AGGATAGGAATCATGAAAAGTCACAA 58.595 34.615 0.00 0.00 36.31 3.33
3146 3271 6.962182 AGGATAGGAATCATGAAAAGTCACA 58.038 36.000 0.00 0.00 36.31 3.58
3147 3272 8.207545 AGTAGGATAGGAATCATGAAAAGTCAC 58.792 37.037 0.00 0.00 36.31 3.67
3149 3274 8.424918 TGAGTAGGATAGGAATCATGAAAAGTC 58.575 37.037 0.00 0.00 33.41 3.01
3292 3599 1.946081 TCACGCTGCATCAAAACAGAA 59.054 42.857 0.00 0.00 35.90 3.02
3423 3750 4.651503 ACTACTACTACTAGAGCACCGGTA 59.348 45.833 6.87 0.00 0.00 4.02
3427 3754 6.454795 ACGATACTACTACTACTAGAGCACC 58.545 44.000 0.00 0.00 0.00 5.01
3437 3764 8.059798 AGCAAAAGGAAACGATACTACTACTA 57.940 34.615 0.00 0.00 0.00 1.82
3565 3906 6.092396 CGCTAATCCGCTTTCTACTATCTCTA 59.908 42.308 0.00 0.00 0.00 2.43
3662 4003 6.137794 ACGATAGATGAATGAAGACGAAGT 57.862 37.500 0.00 0.00 43.48 3.01
3663 4004 7.272299 CCATACGATAGATGAATGAAGACGAAG 59.728 40.741 0.00 0.00 41.38 3.79
3665 4006 6.349363 CCCATACGATAGATGAATGAAGACGA 60.349 42.308 0.00 0.00 41.38 4.20
3666 4007 5.802451 CCCATACGATAGATGAATGAAGACG 59.198 44.000 0.00 0.00 41.38 4.18
3667 4008 6.925211 TCCCATACGATAGATGAATGAAGAC 58.075 40.000 0.00 0.00 41.38 3.01
3668 4009 7.724490 ATCCCATACGATAGATGAATGAAGA 57.276 36.000 0.00 0.00 41.38 2.87
3669 4010 8.783833 AAATCCCATACGATAGATGAATGAAG 57.216 34.615 0.00 0.00 41.38 3.02
3690 4031 8.767478 AATTTCACATGACATTGAAGGAAATC 57.233 30.769 0.00 0.00 33.36 2.17
3735 4088 3.457234 CAAGGGAAAACAAAGCACTTCC 58.543 45.455 0.00 0.00 37.25 3.46
3742 4095 2.429250 ACCGTTCCAAGGGAAAACAAAG 59.571 45.455 5.05 0.00 43.86 2.77
3763 4116 5.005740 CACAAAAGATTCTCTGATCCACCA 58.994 41.667 3.42 0.00 0.00 4.17
3764 4117 4.142513 GCACAAAAGATTCTCTGATCCACC 60.143 45.833 3.42 0.00 0.00 4.61
3765 4118 4.699257 AGCACAAAAGATTCTCTGATCCAC 59.301 41.667 3.42 0.00 0.00 4.02
3766 4119 4.914983 AGCACAAAAGATTCTCTGATCCA 58.085 39.130 3.42 0.00 0.00 3.41
3768 4121 6.906659 TGAAAGCACAAAAGATTCTCTGATC 58.093 36.000 3.42 0.00 0.00 2.92
3770 4123 6.487668 TCATGAAAGCACAAAAGATTCTCTGA 59.512 34.615 0.00 0.00 0.00 3.27
3771 4124 6.675026 TCATGAAAGCACAAAAGATTCTCTG 58.325 36.000 0.00 0.00 0.00 3.35
3772 4125 6.889301 TCATGAAAGCACAAAAGATTCTCT 57.111 33.333 0.00 0.00 0.00 3.10
3779 4143 6.896088 CGTTTTTCTTCATGAAAGCACAAAAG 59.104 34.615 9.88 3.86 44.40 2.27
3798 4162 6.654793 AAACAATAACACATGCACGTTTTT 57.345 29.167 3.59 0.58 0.00 1.94
3812 4176 9.256477 CTTTGTTCCCCTAAAGAAAACAATAAC 57.744 33.333 0.00 0.00 38.99 1.89
3865 4229 5.813080 ACAAAAGACCACAGTTCACTTAC 57.187 39.130 0.00 0.00 0.00 2.34
3866 4230 6.177610 AGAACAAAAGACCACAGTTCACTTA 58.822 36.000 0.00 0.00 40.63 2.24
3989 4367 4.444591 CCATCATCCCCTTCTCTTCTCTTG 60.445 50.000 0.00 0.00 0.00 3.02
3990 4368 3.715834 CCATCATCCCCTTCTCTTCTCTT 59.284 47.826 0.00 0.00 0.00 2.85
3991 4369 3.311252 ACCATCATCCCCTTCTCTTCTCT 60.311 47.826 0.00 0.00 0.00 3.10
4053 4436 0.870393 CTTCGATTGCGCATGCCTAT 59.130 50.000 12.75 0.00 41.78 2.57
4099 4483 1.009997 AAAGCCCCTCATGGAATGGA 58.990 50.000 0.00 0.00 46.73 3.41
4126 4550 5.242838 CCATTGTGTGCCCTTTCTAAGTTAA 59.757 40.000 0.00 0.00 0.00 2.01
4127 4551 4.764823 CCATTGTGTGCCCTTTCTAAGTTA 59.235 41.667 0.00 0.00 0.00 2.24
4148 4572 4.822896 ACGTTTGCTGGTTATAAAAGTCCA 59.177 37.500 0.00 0.00 0.00 4.02
4199 4623 9.581099 ACCTAATTTCTTAAAAATTACCATGCG 57.419 29.630 9.54 0.00 32.64 4.73
4223 4647 1.810755 GAATTTCCTGGTCGTCCAACC 59.189 52.381 2.32 0.00 43.81 3.77
4238 4662 8.776376 AATCGTCATATTGCAAAAAGGAATTT 57.224 26.923 1.71 0.00 39.22 1.82
4241 4665 7.061673 CGAAAATCGTCATATTGCAAAAAGGAA 59.938 33.333 1.71 0.00 34.72 3.36
4260 4691 6.586082 ACTTGCCATGTATGAAAACGAAAATC 59.414 34.615 0.00 0.00 0.00 2.17
4268 4699 6.491745 TGTAAAGGACTTGCCATGTATGAAAA 59.508 34.615 0.00 0.00 40.02 2.29
4273 4704 5.360714 CCATTGTAAAGGACTTGCCATGTAT 59.639 40.000 0.00 0.00 40.02 2.29
4277 4708 2.497273 GCCATTGTAAAGGACTTGCCAT 59.503 45.455 0.00 0.00 40.02 4.40
4295 4726 1.453015 AACTGAACTTGCCACGCCA 60.453 52.632 0.00 0.00 0.00 5.69
4312 4743 4.751098 GCAAGAATTCTCATGCCAAAACAA 59.249 37.500 17.76 0.00 39.79 2.83
4329 4760 3.303526 GGTTTTCTTAGCGAACGCAAGAA 60.304 43.478 25.80 25.80 44.88 2.52
4336 4767 3.143728 TGGGAAGGTTTTCTTAGCGAAC 58.856 45.455 0.00 0.00 35.50 3.95
4345 4776 0.237498 CGTTCGCTGGGAAGGTTTTC 59.763 55.000 16.15 0.89 36.13 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.