Multiple sequence alignment - TraesCS4D01G124900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G124900 chr4D 100.000 3809 0 0 1 3809 109239396 109243204 0.000000e+00 7035.0
1 TraesCS4D01G124900 chr4D 100.000 43 0 0 6 48 6672012 6672054 3.150000e-11 80.5
2 TraesCS4D01G124900 chr4A 95.236 2897 108 13 925 3808 467266819 467263940 0.000000e+00 4558.0
3 TraesCS4D01G124900 chr4A 84.422 199 21 6 437 634 467293895 467293706 1.810000e-43 187.0
4 TraesCS4D01G124900 chr4A 75.306 409 51 28 3410 3809 629351124 629350757 2.370000e-32 150.0
5 TraesCS4D01G124900 chr4B 95.536 2285 94 4 941 3224 167381253 167378976 0.000000e+00 3648.0
6 TraesCS4D01G124900 chr4B 92.773 512 33 2 3259 3769 167374576 167374068 0.000000e+00 737.0
7 TraesCS4D01G124900 chr4B 88.346 266 19 6 85 340 167383767 167383504 3.700000e-80 309.0
8 TraesCS4D01G124900 chr1D 85.638 188 17 7 3629 3809 402146357 402146173 5.020000e-44 189.0
9 TraesCS4D01G124900 chr1D 100.000 28 0 0 3043 3070 430415779 430415806 7.000000e-03 52.8
10 TraesCS4D01G124900 chr2D 85.106 188 19 6 3629 3809 7989109 7988924 2.340000e-42 183.0
11 TraesCS4D01G124900 chr2D 85.106 188 18 7 3629 3809 106352082 106351898 2.340000e-42 183.0
12 TraesCS4D01G124900 chr5D 84.574 188 20 6 3629 3809 15539757 15539572 1.090000e-40 178.0
13 TraesCS4D01G124900 chr5D 100.000 44 0 0 6 49 490595129 490595172 8.770000e-12 82.4
14 TraesCS4D01G124900 chr5D 96.000 50 0 2 6 54 387993838 387993886 3.150000e-11 80.5
15 TraesCS4D01G124900 chr3D 100.000 44 0 0 6 49 480013056 480013013 8.770000e-12 82.4
16 TraesCS4D01G124900 chr7B 97.778 45 1 0 6 50 633098901 633098945 1.130000e-10 78.7
17 TraesCS4D01G124900 chr7B 94.340 53 0 2 6 58 733475877 733475926 1.130000e-10 78.7
18 TraesCS4D01G124900 chr7B 94.118 51 2 1 6 55 710251598 710251648 4.080000e-10 76.8
19 TraesCS4D01G124900 chr2A 95.918 49 0 2 6 54 697377389 697377343 1.130000e-10 78.7
20 TraesCS4D01G124900 chr1A 94.118 51 2 1 6 55 581732569 581732519 4.080000e-10 76.8
21 TraesCS4D01G124900 chr1A 100.000 28 0 0 3043 3070 527955770 527955797 7.000000e-03 52.8
22 TraesCS4D01G124900 chr3B 89.796 49 5 0 3247 3295 726511352 726511400 3.180000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G124900 chr4D 109239396 109243204 3808 False 7035.0 7035 100.000 1 3809 1 chr4D.!!$F2 3808
1 TraesCS4D01G124900 chr4A 467263940 467266819 2879 True 4558.0 4558 95.236 925 3808 1 chr4A.!!$R1 2883
2 TraesCS4D01G124900 chr4B 167378976 167383767 4791 True 1978.5 3648 91.941 85 3224 2 chr4B.!!$R2 3139
3 TraesCS4D01G124900 chr4B 167374068 167374576 508 True 737.0 737 92.773 3259 3769 1 chr4B.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 2240 0.032515 TATTGCCAGTCGGGAGAGGA 60.033 55.000 0.00 0.00 41.26 3.71 F
708 2279 0.036448 TCGAGGAGAGTGACGAAGGT 59.964 55.000 0.00 0.00 0.00 3.50 F
909 2631 0.109504 GCTGCTCGATCTACCGATCC 60.110 60.000 0.00 0.00 42.49 3.36 F
969 2691 0.607489 CAGTTCCTGGGCCAAGACTG 60.607 60.000 21.64 21.64 0.00 3.51 F
2051 3773 1.076549 GGTTGGTGGATGAAGGGCA 59.923 57.895 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 3537 0.460284 CGCACCTGGTGTACATCTCC 60.460 60.000 26.48 7.62 35.75 3.71 R
1888 3610 0.681887 AGCATGGCATTGTAGCAGCA 60.682 50.000 9.78 0.00 35.83 4.41 R
2145 3867 1.002430 AGCTTCTCGGCAACATCAAGA 59.998 47.619 0.00 0.00 34.17 3.02 R
2261 3983 1.140452 GCCTCATCAGCTCTTGGATCA 59.860 52.381 0.00 0.00 0.00 2.92 R
3237 4967 0.035630 AGCTCCACCACTGAATGCTC 60.036 55.000 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.766545 AGTCCGTAACCTACCTTGTACA 58.233 45.455 0.00 0.00 0.00 2.90
22 23 3.507622 AGTCCGTAACCTACCTTGTACAC 59.492 47.826 0.00 0.00 0.00 2.90
23 24 3.255642 GTCCGTAACCTACCTTGTACACA 59.744 47.826 0.00 0.00 0.00 3.72
24 25 3.894427 TCCGTAACCTACCTTGTACACAA 59.106 43.478 0.00 0.00 0.00 3.33
25 26 4.527816 TCCGTAACCTACCTTGTACACAAT 59.472 41.667 0.00 0.00 35.02 2.71
26 27 5.714333 TCCGTAACCTACCTTGTACACAATA 59.286 40.000 0.00 0.00 35.02 1.90
27 28 6.380846 TCCGTAACCTACCTTGTACACAATAT 59.619 38.462 0.00 0.00 35.02 1.28
28 29 7.043565 CCGTAACCTACCTTGTACACAATATT 58.956 38.462 0.00 0.00 35.02 1.28
29 30 7.223387 CCGTAACCTACCTTGTACACAATATTC 59.777 40.741 0.00 0.00 35.02 1.75
30 31 7.043854 CGTAACCTACCTTGTACACAATATTCG 60.044 40.741 0.00 0.00 35.02 3.34
31 32 6.534475 ACCTACCTTGTACACAATATTCGA 57.466 37.500 0.00 0.00 35.02 3.71
32 33 6.335777 ACCTACCTTGTACACAATATTCGAC 58.664 40.000 0.00 0.00 35.02 4.20
33 34 6.071221 ACCTACCTTGTACACAATATTCGACA 60.071 38.462 0.00 0.00 35.02 4.35
34 35 6.255020 CCTACCTTGTACACAATATTCGACAC 59.745 42.308 0.00 0.00 35.02 3.67
35 36 5.543714 ACCTTGTACACAATATTCGACACA 58.456 37.500 0.00 0.00 35.02 3.72
36 37 5.992829 ACCTTGTACACAATATTCGACACAA 59.007 36.000 0.00 0.00 35.02 3.33
37 38 6.073440 ACCTTGTACACAATATTCGACACAAC 60.073 38.462 0.00 0.00 35.02 3.32
38 39 6.147164 CCTTGTACACAATATTCGACACAACT 59.853 38.462 0.00 0.00 35.02 3.16
39 40 6.699895 TGTACACAATATTCGACACAACTC 57.300 37.500 0.00 0.00 0.00 3.01
40 41 6.452242 TGTACACAATATTCGACACAACTCT 58.548 36.000 0.00 0.00 0.00 3.24
41 42 7.595604 TGTACACAATATTCGACACAACTCTA 58.404 34.615 0.00 0.00 0.00 2.43
42 43 8.083462 TGTACACAATATTCGACACAACTCTAA 58.917 33.333 0.00 0.00 0.00 2.10
43 44 7.347508 ACACAATATTCGACACAACTCTAAC 57.652 36.000 0.00 0.00 0.00 2.34
44 45 6.926826 ACACAATATTCGACACAACTCTAACA 59.073 34.615 0.00 0.00 0.00 2.41
45 46 7.116376 ACACAATATTCGACACAACTCTAACAG 59.884 37.037 0.00 0.00 0.00 3.16
46 47 7.328493 CACAATATTCGACACAACTCTAACAGA 59.672 37.037 0.00 0.00 0.00 3.41
47 48 7.328737 ACAATATTCGACACAACTCTAACAGAC 59.671 37.037 0.00 0.00 0.00 3.51
48 49 3.637998 TCGACACAACTCTAACAGACC 57.362 47.619 0.00 0.00 0.00 3.85
49 50 2.953648 TCGACACAACTCTAACAGACCA 59.046 45.455 0.00 0.00 0.00 4.02
50 51 3.572682 TCGACACAACTCTAACAGACCAT 59.427 43.478 0.00 0.00 0.00 3.55
51 52 4.763279 TCGACACAACTCTAACAGACCATA 59.237 41.667 0.00 0.00 0.00 2.74
52 53 5.417894 TCGACACAACTCTAACAGACCATAT 59.582 40.000 0.00 0.00 0.00 1.78
53 54 5.516696 CGACACAACTCTAACAGACCATATG 59.483 44.000 0.00 0.00 0.00 1.78
54 55 6.605471 ACACAACTCTAACAGACCATATGA 57.395 37.500 3.65 0.00 0.00 2.15
55 56 6.634805 ACACAACTCTAACAGACCATATGAG 58.365 40.000 3.65 0.00 0.00 2.90
56 57 5.521735 CACAACTCTAACAGACCATATGAGC 59.478 44.000 3.65 0.00 0.00 4.26
57 58 5.423610 ACAACTCTAACAGACCATATGAGCT 59.576 40.000 3.65 0.00 0.00 4.09
58 59 5.782893 ACTCTAACAGACCATATGAGCTC 57.217 43.478 6.82 6.82 0.00 4.09
59 60 4.277174 ACTCTAACAGACCATATGAGCTCG 59.723 45.833 9.64 0.00 0.00 5.03
60 61 2.898729 AACAGACCATATGAGCTCGG 57.101 50.000 9.64 6.53 0.00 4.63
61 62 1.043816 ACAGACCATATGAGCTCGGG 58.956 55.000 9.64 10.35 0.00 5.14
62 63 0.319728 CAGACCATATGAGCTCGGGG 59.680 60.000 9.64 9.98 0.00 5.73
63 64 1.004440 GACCATATGAGCTCGGGGC 60.004 63.158 9.64 6.43 42.19 5.80
64 65 2.348998 CCATATGAGCTCGGGGCC 59.651 66.667 9.64 0.00 43.05 5.80
65 66 2.047844 CATATGAGCTCGGGGCCG 60.048 66.667 9.64 0.00 43.05 6.13
66 67 2.524394 ATATGAGCTCGGGGCCGT 60.524 61.111 9.64 0.00 43.05 5.68
67 68 2.140792 ATATGAGCTCGGGGCCGTT 61.141 57.895 9.64 0.00 43.05 4.44
68 69 1.696097 ATATGAGCTCGGGGCCGTTT 61.696 55.000 9.64 0.00 43.05 3.60
69 70 1.906105 TATGAGCTCGGGGCCGTTTT 61.906 55.000 9.64 0.00 43.05 2.43
70 71 3.431725 GAGCTCGGGGCCGTTTTG 61.432 66.667 0.00 0.00 43.05 2.44
71 72 3.894547 GAGCTCGGGGCCGTTTTGA 62.895 63.158 0.00 0.00 43.05 2.69
72 73 3.431725 GCTCGGGGCCGTTTTGAG 61.432 66.667 0.00 0.00 40.74 3.02
73 74 2.032071 CTCGGGGCCGTTTTGAGT 59.968 61.111 0.00 0.00 40.74 3.41
74 75 1.599797 CTCGGGGCCGTTTTGAGTT 60.600 57.895 0.00 0.00 40.74 3.01
75 76 1.152922 TCGGGGCCGTTTTGAGTTT 60.153 52.632 0.00 0.00 40.74 2.66
76 77 1.167781 TCGGGGCCGTTTTGAGTTTC 61.168 55.000 0.00 0.00 40.74 2.78
77 78 1.663739 GGGGCCGTTTTGAGTTTCC 59.336 57.895 0.00 0.00 0.00 3.13
78 79 1.284715 GGGCCGTTTTGAGTTTCCG 59.715 57.895 0.00 0.00 0.00 4.30
79 80 1.449726 GGGCCGTTTTGAGTTTCCGT 61.450 55.000 0.00 0.00 0.00 4.69
80 81 1.228533 GGCCGTTTTGAGTTTCCGTA 58.771 50.000 0.00 0.00 0.00 4.02
81 82 1.808343 GGCCGTTTTGAGTTTCCGTAT 59.192 47.619 0.00 0.00 0.00 3.06
82 83 2.227149 GGCCGTTTTGAGTTTCCGTATT 59.773 45.455 0.00 0.00 0.00 1.89
83 84 3.485633 GCCGTTTTGAGTTTCCGTATTC 58.514 45.455 0.00 0.00 0.00 1.75
155 157 7.598278 ACATGTTTAAGTGTTTGTGTTTGAGA 58.402 30.769 0.00 0.00 0.00 3.27
224 226 1.052124 AACCACTGGTTGTCGAGGGA 61.052 55.000 12.97 0.00 45.07 4.20
225 227 1.293498 CCACTGGTTGTCGAGGGAG 59.707 63.158 0.00 0.00 0.00 4.30
227 229 0.038159 CACTGGTTGTCGAGGGAGAC 60.038 60.000 0.00 0.00 41.30 3.36
233 235 1.906824 TGTCGAGGGAGACACCACC 60.907 63.158 0.00 0.00 45.18 4.61
234 236 1.906824 GTCGAGGGAGACACCACCA 60.907 63.158 0.00 0.00 40.65 4.17
235 237 1.078528 TCGAGGGAGACACCACCAT 59.921 57.895 0.00 0.00 41.20 3.55
236 238 0.970937 TCGAGGGAGACACCACCATC 60.971 60.000 0.00 0.00 41.20 3.51
238 240 1.207791 GAGGGAGACACCACCATCAT 58.792 55.000 0.00 0.00 41.20 2.45
279 289 5.982516 AGTTTATGTCTCTGATCGATCTTGC 59.017 40.000 25.02 11.71 0.00 4.01
292 302 2.033407 CGATCTTGCCATGTTCATCGAC 60.033 50.000 0.00 0.00 36.14 4.20
303 313 5.869344 CCATGTTCATCGACAAAGTAGAAGA 59.131 40.000 0.00 0.00 32.47 2.87
311 321 8.034804 TCATCGACAAAGTAGAAGATGAAATGA 58.965 33.333 3.79 0.00 40.69 2.57
317 327 7.278868 ACAAAGTAGAAGATGAAATGACGATCC 59.721 37.037 0.00 0.00 0.00 3.36
319 329 4.655762 AGAAGATGAAATGACGATCCGA 57.344 40.909 0.00 0.00 0.00 4.55
352 938 3.558533 GGTGGAAACTGGGTACTTACTGG 60.559 52.174 0.00 0.00 0.00 4.00
353 939 2.640826 TGGAAACTGGGTACTTACTGGG 59.359 50.000 0.00 0.00 0.00 4.45
360 946 2.372837 TGGGTACTTACTGGGGAACAAC 59.627 50.000 0.00 0.00 0.00 3.32
363 949 0.470766 ACTTACTGGGGAACAACGCA 59.529 50.000 0.00 0.00 0.00 5.24
366 952 1.746322 TACTGGGGAACAACGCACGA 61.746 55.000 0.00 0.00 0.00 4.35
367 953 2.589442 TGGGGAACAACGCACGAC 60.589 61.111 0.00 0.00 0.00 4.34
373 959 2.159272 GAACAACGCACGACCAGAGC 62.159 60.000 0.00 0.00 0.00 4.09
403 989 4.692475 CGGTGACCGGAACCCACC 62.692 72.222 17.80 21.05 44.15 4.61
407 993 4.340246 GACCGGAACCCACCCACC 62.340 72.222 9.46 0.00 0.00 4.61
411 997 1.223487 CGGAACCCACCCACCTATG 59.777 63.158 0.00 0.00 0.00 2.23
434 1020 1.998315 CATGTCTGCCTCGAGAACTTG 59.002 52.381 15.71 10.52 0.00 3.16
442 1028 1.801178 CCTCGAGAACTTGAACCTTGC 59.199 52.381 15.71 0.00 0.00 4.01
456 1669 1.293924 CCTTGCGATTGTAGGAGCAG 58.706 55.000 0.00 0.00 40.90 4.24
460 1673 1.275010 TGCGATTGTAGGAGCAGTTCA 59.725 47.619 0.00 0.00 34.39 3.18
502 1715 0.324943 AGCGGAACAACTACATGGCT 59.675 50.000 0.00 0.00 0.00 4.75
515 1728 1.842562 ACATGGCTGATTACAGAGCCT 59.157 47.619 11.16 0.00 46.77 4.58
519 1732 2.170607 TGGCTGATTACAGAGCCTAACC 59.829 50.000 11.16 0.00 46.77 2.85
563 1777 5.451342 GCCGAAGAAAAGATTACGCAAATAC 59.549 40.000 0.00 0.00 0.00 1.89
564 1778 6.539324 CCGAAGAAAAGATTACGCAAATACA 58.461 36.000 0.00 0.00 0.00 2.29
565 1779 6.682863 CCGAAGAAAAGATTACGCAAATACAG 59.317 38.462 0.00 0.00 0.00 2.74
566 1780 7.234384 CGAAGAAAAGATTACGCAAATACAGT 58.766 34.615 0.00 0.00 0.00 3.55
568 1782 9.690434 GAAGAAAAGATTACGCAAATACAGTAG 57.310 33.333 0.00 0.00 0.00 2.57
569 1783 8.773404 AGAAAAGATTACGCAAATACAGTAGT 57.227 30.769 0.00 0.00 0.00 2.73
570 1784 9.216117 AGAAAAGATTACGCAAATACAGTAGTT 57.784 29.630 0.00 0.00 0.00 2.24
571 1785 9.821662 GAAAAGATTACGCAAATACAGTAGTTT 57.178 29.630 0.00 0.00 0.00 2.66
573 1787 9.607285 AAAGATTACGCAAATACAGTAGTTTTG 57.393 29.630 3.20 3.20 33.16 2.44
588 1802 1.069049 GTTTTGTGTGCTTGCCTCCAT 59.931 47.619 0.00 0.00 0.00 3.41
591 1805 1.825090 TGTGTGCTTGCCTCCATAAG 58.175 50.000 0.00 0.00 0.00 1.73
599 2170 2.574006 TGCCTCCATAAGCATCATCC 57.426 50.000 0.00 0.00 33.08 3.51
605 2176 3.865446 TCCATAAGCATCATCCGCTATG 58.135 45.455 0.00 0.00 39.29 2.23
608 2179 4.384599 GCATCATCCGCTATGCCA 57.615 55.556 0.00 0.00 42.13 4.92
650 2221 2.295253 GTGGAACCGATGATTCTCGT 57.705 50.000 0.00 0.00 36.93 4.18
651 2222 3.431922 GTGGAACCGATGATTCTCGTA 57.568 47.619 0.00 0.00 36.93 3.43
652 2223 3.978687 GTGGAACCGATGATTCTCGTAT 58.021 45.455 0.00 0.00 36.93 3.06
653 2224 4.369182 GTGGAACCGATGATTCTCGTATT 58.631 43.478 0.00 0.00 36.93 1.89
654 2225 4.209288 GTGGAACCGATGATTCTCGTATTG 59.791 45.833 0.00 0.00 36.93 1.90
655 2226 3.184581 GGAACCGATGATTCTCGTATTGC 59.815 47.826 0.00 0.00 36.93 3.56
656 2227 2.755650 ACCGATGATTCTCGTATTGCC 58.244 47.619 0.00 0.00 36.93 4.52
657 2228 2.102420 ACCGATGATTCTCGTATTGCCA 59.898 45.455 0.00 0.00 36.93 4.92
658 2229 2.733552 CCGATGATTCTCGTATTGCCAG 59.266 50.000 0.00 0.00 36.93 4.85
659 2230 3.384668 CGATGATTCTCGTATTGCCAGT 58.615 45.455 0.00 0.00 34.00 4.00
660 2231 3.426859 CGATGATTCTCGTATTGCCAGTC 59.573 47.826 0.00 0.00 34.00 3.51
661 2232 2.809446 TGATTCTCGTATTGCCAGTCG 58.191 47.619 0.00 0.00 0.00 4.18
662 2233 2.128035 GATTCTCGTATTGCCAGTCGG 58.872 52.381 0.00 0.00 0.00 4.79
663 2234 0.174845 TTCTCGTATTGCCAGTCGGG 59.825 55.000 0.00 0.00 40.85 5.14
664 2235 0.681887 TCTCGTATTGCCAGTCGGGA 60.682 55.000 0.00 0.00 40.01 5.14
665 2236 0.249073 CTCGTATTGCCAGTCGGGAG 60.249 60.000 0.00 0.00 40.01 4.30
666 2237 0.681887 TCGTATTGCCAGTCGGGAGA 60.682 55.000 0.00 0.00 40.01 3.71
667 2238 0.249073 CGTATTGCCAGTCGGGAGAG 60.249 60.000 0.00 0.00 41.26 3.20
668 2239 0.105039 GTATTGCCAGTCGGGAGAGG 59.895 60.000 0.00 0.00 41.26 3.69
669 2240 0.032515 TATTGCCAGTCGGGAGAGGA 60.033 55.000 0.00 0.00 41.26 3.71
670 2241 0.909610 ATTGCCAGTCGGGAGAGGAA 60.910 55.000 0.00 0.00 41.26 3.36
671 2242 1.544825 TTGCCAGTCGGGAGAGGAAG 61.545 60.000 0.00 0.00 41.26 3.46
672 2243 2.726351 GCCAGTCGGGAGAGGAAGG 61.726 68.421 0.00 0.00 41.26 3.46
673 2244 2.726351 CCAGTCGGGAGAGGAAGGC 61.726 68.421 0.00 0.00 41.26 4.35
674 2245 2.756283 AGTCGGGAGAGGAAGGCG 60.756 66.667 0.00 0.00 41.26 5.52
675 2246 3.839432 GTCGGGAGAGGAAGGCGG 61.839 72.222 0.00 0.00 41.26 6.13
676 2247 4.377760 TCGGGAGAGGAAGGCGGT 62.378 66.667 0.00 0.00 0.00 5.68
677 2248 4.148825 CGGGAGAGGAAGGCGGTG 62.149 72.222 0.00 0.00 0.00 4.94
678 2249 4.475135 GGGAGAGGAAGGCGGTGC 62.475 72.222 0.00 0.00 0.00 5.01
679 2250 3.706373 GGAGAGGAAGGCGGTGCA 61.706 66.667 0.00 0.00 0.00 4.57
680 2251 2.347490 GAGAGGAAGGCGGTGCAA 59.653 61.111 0.00 0.00 0.00 4.08
681 2252 1.302511 GAGAGGAAGGCGGTGCAAA 60.303 57.895 0.00 0.00 0.00 3.68
682 2253 1.301677 GAGAGGAAGGCGGTGCAAAG 61.302 60.000 0.00 0.00 0.00 2.77
683 2254 1.302511 GAGGAAGGCGGTGCAAAGA 60.303 57.895 0.00 0.00 0.00 2.52
684 2255 0.678048 GAGGAAGGCGGTGCAAAGAT 60.678 55.000 0.00 0.00 0.00 2.40
685 2256 0.962356 AGGAAGGCGGTGCAAAGATG 60.962 55.000 0.00 0.00 0.00 2.90
694 2265 3.093278 GCAAAGATGCGGTCGAGG 58.907 61.111 0.00 0.00 43.83 4.63
695 2266 1.447838 GCAAAGATGCGGTCGAGGA 60.448 57.895 0.00 0.00 43.83 3.71
696 2267 1.424493 GCAAAGATGCGGTCGAGGAG 61.424 60.000 0.00 0.00 43.83 3.69
697 2268 0.173481 CAAAGATGCGGTCGAGGAGA 59.827 55.000 0.00 0.00 0.00 3.71
698 2269 0.457851 AAAGATGCGGTCGAGGAGAG 59.542 55.000 0.00 0.00 0.00 3.20
699 2270 0.681564 AAGATGCGGTCGAGGAGAGT 60.682 55.000 0.00 0.00 0.00 3.24
700 2271 1.064946 GATGCGGTCGAGGAGAGTG 59.935 63.158 0.00 0.00 0.00 3.51
701 2272 1.377366 GATGCGGTCGAGGAGAGTGA 61.377 60.000 0.00 0.00 0.00 3.41
702 2273 1.658686 ATGCGGTCGAGGAGAGTGAC 61.659 60.000 0.00 0.00 0.00 3.67
703 2274 2.785921 CGGTCGAGGAGAGTGACG 59.214 66.667 0.00 0.00 33.45 4.35
704 2275 1.740664 CGGTCGAGGAGAGTGACGA 60.741 63.158 0.00 0.00 33.45 4.20
705 2276 1.296755 CGGTCGAGGAGAGTGACGAA 61.297 60.000 0.00 0.00 36.57 3.85
706 2277 0.448593 GGTCGAGGAGAGTGACGAAG 59.551 60.000 0.00 0.00 36.57 3.79
707 2278 0.448593 GTCGAGGAGAGTGACGAAGG 59.551 60.000 0.00 0.00 36.57 3.46
708 2279 0.036448 TCGAGGAGAGTGACGAAGGT 59.964 55.000 0.00 0.00 0.00 3.50
709 2280 0.882474 CGAGGAGAGTGACGAAGGTT 59.118 55.000 0.00 0.00 0.00 3.50
710 2281 1.269998 CGAGGAGAGTGACGAAGGTTT 59.730 52.381 0.00 0.00 0.00 3.27
711 2282 2.668834 CGAGGAGAGTGACGAAGGTTTC 60.669 54.545 0.00 0.00 0.00 2.78
712 2283 2.296471 GAGGAGAGTGACGAAGGTTTCA 59.704 50.000 0.00 0.00 0.00 2.69
713 2284 2.900546 AGGAGAGTGACGAAGGTTTCAT 59.099 45.455 0.00 0.00 0.00 2.57
714 2285 3.056465 AGGAGAGTGACGAAGGTTTCATC 60.056 47.826 0.00 0.00 0.00 2.92
715 2286 3.306088 GGAGAGTGACGAAGGTTTCATCA 60.306 47.826 0.00 0.00 28.16 3.07
716 2287 3.919216 AGAGTGACGAAGGTTTCATCAG 58.081 45.455 0.00 0.00 31.92 2.90
717 2288 3.574396 AGAGTGACGAAGGTTTCATCAGA 59.426 43.478 0.00 0.00 31.92 3.27
718 2289 3.919216 AGTGACGAAGGTTTCATCAGAG 58.081 45.455 0.00 0.00 31.92 3.35
719 2290 3.322254 AGTGACGAAGGTTTCATCAGAGT 59.678 43.478 0.00 0.00 31.92 3.24
720 2291 3.430218 GTGACGAAGGTTTCATCAGAGTG 59.570 47.826 0.00 0.00 31.92 3.51
721 2292 2.996621 GACGAAGGTTTCATCAGAGTGG 59.003 50.000 0.00 0.00 0.00 4.00
722 2293 2.632996 ACGAAGGTTTCATCAGAGTGGA 59.367 45.455 0.00 0.00 0.00 4.02
723 2294 2.996621 CGAAGGTTTCATCAGAGTGGAC 59.003 50.000 0.00 0.00 0.00 4.02
724 2295 2.751166 AGGTTTCATCAGAGTGGACG 57.249 50.000 0.00 0.00 0.00 4.79
725 2296 2.248248 AGGTTTCATCAGAGTGGACGA 58.752 47.619 0.00 0.00 0.00 4.20
726 2297 2.834549 AGGTTTCATCAGAGTGGACGAT 59.165 45.455 0.00 0.00 0.00 3.73
727 2298 3.118956 AGGTTTCATCAGAGTGGACGATC 60.119 47.826 0.00 0.00 0.00 3.69
728 2299 3.190874 GTTTCATCAGAGTGGACGATCC 58.809 50.000 0.00 0.00 36.96 3.36
729 2300 2.143876 TCATCAGAGTGGACGATCCA 57.856 50.000 3.02 3.02 45.98 3.41
738 2309 2.979814 TGGACGATCCATGGTAGTTG 57.020 50.000 12.58 5.99 42.67 3.16
739 2310 2.184533 TGGACGATCCATGGTAGTTGT 58.815 47.619 12.58 9.18 42.67 3.32
740 2311 2.093711 TGGACGATCCATGGTAGTTGTG 60.094 50.000 12.58 0.00 42.67 3.33
741 2312 1.933853 GACGATCCATGGTAGTTGTGC 59.066 52.381 12.58 1.44 0.00 4.57
742 2313 1.299541 CGATCCATGGTAGTTGTGCC 58.700 55.000 12.58 0.00 0.00 5.01
743 2314 1.134401 CGATCCATGGTAGTTGTGCCT 60.134 52.381 12.58 0.00 0.00 4.75
744 2315 2.292267 GATCCATGGTAGTTGTGCCTG 58.708 52.381 12.58 0.00 0.00 4.85
745 2316 1.064003 TCCATGGTAGTTGTGCCTGT 58.936 50.000 12.58 0.00 0.00 4.00
746 2317 1.167851 CCATGGTAGTTGTGCCTGTG 58.832 55.000 2.57 0.00 0.00 3.66
747 2318 1.167851 CATGGTAGTTGTGCCTGTGG 58.832 55.000 0.00 0.00 0.00 4.17
748 2319 0.771127 ATGGTAGTTGTGCCTGTGGT 59.229 50.000 0.00 0.00 0.00 4.16
749 2320 0.179032 TGGTAGTTGTGCCTGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
750 2321 1.515521 GGTAGTTGTGCCTGTGGTGC 61.516 60.000 0.00 0.00 0.00 5.01
751 2322 0.817634 GTAGTTGTGCCTGTGGTGCA 60.818 55.000 0.00 0.00 36.12 4.57
759 2330 3.663176 CTGTGGTGCACGGCCAAG 61.663 66.667 11.45 0.01 37.81 3.61
771 2342 2.908940 GCCAAGGGCCATGATCGG 60.909 66.667 10.97 0.00 44.06 4.18
830 2552 2.202837 GCGAACGATAACCCGGCT 60.203 61.111 0.00 0.00 0.00 5.52
835 2557 1.410153 GAACGATAACCCGGCTTAGGA 59.590 52.381 0.00 0.00 0.00 2.94
837 2559 1.325355 CGATAACCCGGCTTAGGAGA 58.675 55.000 0.00 0.00 0.00 3.71
838 2560 1.269998 CGATAACCCGGCTTAGGAGAG 59.730 57.143 0.00 0.00 0.00 3.20
839 2561 2.595238 GATAACCCGGCTTAGGAGAGA 58.405 52.381 0.00 0.00 0.00 3.10
840 2562 2.068834 TAACCCGGCTTAGGAGAGAG 57.931 55.000 0.00 0.00 0.00 3.20
843 2565 0.965439 CCCGGCTTAGGAGAGAGATG 59.035 60.000 0.00 0.00 0.00 2.90
845 2567 1.479573 CCGGCTTAGGAGAGAGATGGA 60.480 57.143 0.00 0.00 0.00 3.41
846 2568 1.885887 CGGCTTAGGAGAGAGATGGAG 59.114 57.143 0.00 0.00 0.00 3.86
848 2570 2.158385 GGCTTAGGAGAGAGATGGAGGA 60.158 54.545 0.00 0.00 0.00 3.71
850 2572 3.436470 GCTTAGGAGAGAGATGGAGGAGT 60.436 52.174 0.00 0.00 0.00 3.85
851 2573 4.398319 CTTAGGAGAGAGATGGAGGAGTC 58.602 52.174 0.00 0.00 0.00 3.36
852 2574 1.142870 AGGAGAGAGATGGAGGAGTCG 59.857 57.143 0.00 0.00 0.00 4.18
853 2575 1.142060 GGAGAGAGATGGAGGAGTCGA 59.858 57.143 0.00 0.00 0.00 4.20
854 2576 2.218603 GAGAGAGATGGAGGAGTCGAC 58.781 57.143 7.70 7.70 0.00 4.20
869 2591 2.834549 AGTCGACTCCATGGATCAAACT 59.165 45.455 16.63 13.72 0.00 2.66
870 2592 3.261897 AGTCGACTCCATGGATCAAACTT 59.738 43.478 16.63 0.00 0.00 2.66
871 2593 3.619038 GTCGACTCCATGGATCAAACTTC 59.381 47.826 16.63 2.72 0.00 3.01
872 2594 3.515502 TCGACTCCATGGATCAAACTTCT 59.484 43.478 16.63 0.00 0.00 2.85
873 2595 4.709886 TCGACTCCATGGATCAAACTTCTA 59.290 41.667 16.63 0.00 0.00 2.10
874 2596 5.046529 CGACTCCATGGATCAAACTTCTAG 58.953 45.833 16.63 0.92 0.00 2.43
875 2597 4.775236 ACTCCATGGATCAAACTTCTAGC 58.225 43.478 16.63 0.00 0.00 3.42
876 2598 3.797039 TCCATGGATCAAACTTCTAGCG 58.203 45.455 11.44 0.00 0.00 4.26
877 2599 2.289002 CCATGGATCAAACTTCTAGCGC 59.711 50.000 5.56 0.00 0.00 5.92
878 2600 3.201290 CATGGATCAAACTTCTAGCGCT 58.799 45.455 17.26 17.26 0.00 5.92
879 2601 2.621338 TGGATCAAACTTCTAGCGCTG 58.379 47.619 22.90 10.49 0.00 5.18
880 2602 1.328986 GGATCAAACTTCTAGCGCTGC 59.671 52.381 22.90 0.00 0.00 5.25
881 2603 2.275318 GATCAAACTTCTAGCGCTGCT 58.725 47.619 22.90 8.09 43.41 4.24
882 2604 1.432514 TCAAACTTCTAGCGCTGCTG 58.567 50.000 22.90 10.42 40.10 4.41
883 2605 0.179205 CAAACTTCTAGCGCTGCTGC 60.179 55.000 22.90 5.34 40.10 5.25
884 2606 1.301677 AAACTTCTAGCGCTGCTGCC 61.302 55.000 22.90 3.10 40.10 4.85
885 2607 3.260483 CTTCTAGCGCTGCTGCCG 61.260 66.667 22.90 6.53 40.10 5.69
886 2608 4.819761 TTCTAGCGCTGCTGCCGG 62.820 66.667 22.90 0.00 40.10 6.13
905 2627 3.023118 TCGCTGCTCGATCTACCG 58.977 61.111 0.00 0.00 43.16 4.02
906 2628 1.523032 TCGCTGCTCGATCTACCGA 60.523 57.895 0.00 0.00 43.16 4.69
907 2629 0.885150 TCGCTGCTCGATCTACCGAT 60.885 55.000 0.00 0.00 43.16 4.18
908 2630 0.453615 CGCTGCTCGATCTACCGATC 60.454 60.000 0.00 0.00 42.13 3.69
909 2631 0.109504 GCTGCTCGATCTACCGATCC 60.110 60.000 0.00 0.00 42.49 3.36
910 2632 1.529226 CTGCTCGATCTACCGATCCT 58.471 55.000 0.00 0.00 42.49 3.24
911 2633 2.701107 CTGCTCGATCTACCGATCCTA 58.299 52.381 0.00 0.00 42.49 2.94
912 2634 3.275143 CTGCTCGATCTACCGATCCTAT 58.725 50.000 0.00 0.00 42.49 2.57
913 2635 4.443621 CTGCTCGATCTACCGATCCTATA 58.556 47.826 0.00 0.00 42.49 1.31
914 2636 4.190001 TGCTCGATCTACCGATCCTATAC 58.810 47.826 0.00 0.00 42.49 1.47
915 2637 4.190001 GCTCGATCTACCGATCCTATACA 58.810 47.826 0.00 0.00 42.49 2.29
916 2638 4.271533 GCTCGATCTACCGATCCTATACAG 59.728 50.000 0.00 0.00 42.49 2.74
917 2639 5.417754 TCGATCTACCGATCCTATACAGT 57.582 43.478 0.00 0.00 42.49 3.55
918 2640 6.535963 TCGATCTACCGATCCTATACAGTA 57.464 41.667 0.00 0.00 42.49 2.74
919 2641 6.571605 TCGATCTACCGATCCTATACAGTAG 58.428 44.000 0.00 0.00 42.49 2.57
920 2642 5.754406 CGATCTACCGATCCTATACAGTAGG 59.246 48.000 0.00 0.00 42.49 3.18
921 2643 4.841422 TCTACCGATCCTATACAGTAGGC 58.159 47.826 0.00 0.00 34.74 3.93
922 2644 3.520691 ACCGATCCTATACAGTAGGCA 57.479 47.619 0.00 0.00 34.74 4.75
923 2645 3.155501 ACCGATCCTATACAGTAGGCAC 58.844 50.000 0.00 0.00 34.74 5.01
933 2655 1.086067 CAGTAGGCACAGGTCGCATG 61.086 60.000 0.00 0.00 0.00 4.06
939 2661 1.868997 CACAGGTCGCATGAACCAC 59.131 57.895 17.17 0.00 29.44 4.16
969 2691 0.607489 CAGTTCCTGGGCCAAGACTG 60.607 60.000 21.64 21.64 0.00 3.51
977 2699 1.202758 TGGGCCAAGACTGTAGTGTTG 60.203 52.381 2.13 13.26 45.49 3.33
978 2700 1.202770 GGGCCAAGACTGTAGTGTTGT 60.203 52.381 17.29 0.00 44.75 3.32
979 2701 2.572290 GGCCAAGACTGTAGTGTTGTT 58.428 47.619 17.29 0.00 44.75 2.83
1012 2734 5.993441 CCATAAAGGCAAATGATTCCCAATC 59.007 40.000 0.00 0.00 38.40 2.67
1177 2899 1.779061 GCTCCACTCCCCCAACTTCA 61.779 60.000 0.00 0.00 0.00 3.02
1242 2964 2.123683 CGCCTCCAGCTCCTCCTA 60.124 66.667 0.00 0.00 40.39 2.94
1251 2973 1.460305 GCTCCTCCTATGCTCCCCA 60.460 63.158 0.00 0.00 0.00 4.96
1772 3494 2.158330 CGCACGCGTATGCTCTCAA 61.158 57.895 13.44 0.00 43.80 3.02
1836 3558 2.046314 ATGTACACCAGGTGCGGC 60.046 61.111 20.48 10.32 36.98 6.53
1888 3610 2.004583 CGTTACGGACATGGACACAT 57.995 50.000 0.00 0.00 37.99 3.21
2051 3773 1.076549 GGTTGGTGGATGAAGGGCA 59.923 57.895 0.00 0.00 0.00 5.36
2100 3822 1.131303 TTGGGGTCACACCGAGGATT 61.131 55.000 0.00 0.00 39.83 3.01
2185 3907 3.260884 GCTTATCCGAGGGATGGACATTA 59.739 47.826 7.40 0.00 43.06 1.90
2248 3970 3.290710 GGGATTCATGGCAAGCTAGAAA 58.709 45.455 0.00 0.00 0.00 2.52
2261 3983 3.674477 AGCTAGAAATTGGGGAGAGGAT 58.326 45.455 0.00 0.00 0.00 3.24
2266 3988 3.397282 AGAAATTGGGGAGAGGATGATCC 59.603 47.826 2.46 2.46 36.58 3.36
2304 4026 0.403271 AGCCAGAGCACAGTGGAAAT 59.597 50.000 1.84 0.00 43.56 2.17
2339 4061 3.057104 TCCAACTTCTACGCGAGAATGAA 60.057 43.478 15.93 8.35 43.39 2.57
2442 4164 4.665451 ACATCAATGGTGTTCTCCATGAA 58.335 39.130 0.00 0.68 46.14 2.57
2494 4216 3.506398 TCAAGGGAGATATACGCCATGA 58.494 45.455 0.00 0.00 40.26 3.07
2506 4228 2.843701 ACGCCATGATTCAAGAGATCC 58.156 47.619 0.00 0.00 0.00 3.36
2508 4230 3.208594 CGCCATGATTCAAGAGATCCAA 58.791 45.455 0.00 0.00 0.00 3.53
2580 4302 0.538977 ACGTCGAGGAGGAGGACAAA 60.539 55.000 12.85 0.00 0.00 2.83
2585 4307 1.751924 CGAGGAGGAGGACAAAGTAGG 59.248 57.143 0.00 0.00 0.00 3.18
2589 4311 0.608640 AGGAGGACAAAGTAGGTGCG 59.391 55.000 0.00 0.00 0.00 5.34
2846 4568 3.788333 GCCATGTGCATAAGAATGTGT 57.212 42.857 0.00 0.00 40.77 3.72
3237 4967 3.213206 ACTGTATGGGTATGCCATGTG 57.787 47.619 1.04 0.00 36.17 3.21
3250 4980 1.830279 CCATGTGAGCATTCAGTGGT 58.170 50.000 0.00 0.00 42.28 4.16
3300 5039 4.621747 GCCACAGAGTAGAAACAGTGCTAT 60.622 45.833 0.00 0.00 0.00 2.97
3301 5040 5.105752 CCACAGAGTAGAAACAGTGCTATC 58.894 45.833 0.00 0.00 0.00 2.08
3302 5041 5.336770 CCACAGAGTAGAAACAGTGCTATCA 60.337 44.000 0.00 0.00 0.00 2.15
3303 5042 6.159293 CACAGAGTAGAAACAGTGCTATCAA 58.841 40.000 0.00 0.00 0.00 2.57
3304 5043 6.646653 CACAGAGTAGAAACAGTGCTATCAAA 59.353 38.462 0.00 0.00 0.00 2.69
3305 5044 7.332926 CACAGAGTAGAAACAGTGCTATCAAAT 59.667 37.037 0.00 0.00 0.00 2.32
3306 5045 7.880195 ACAGAGTAGAAACAGTGCTATCAAATT 59.120 33.333 0.00 0.00 0.00 1.82
3307 5046 8.173775 CAGAGTAGAAACAGTGCTATCAAATTG 58.826 37.037 0.00 0.00 0.00 2.32
3308 5047 7.335422 AGAGTAGAAACAGTGCTATCAAATTGG 59.665 37.037 0.00 0.00 0.00 3.16
3315 5054 6.860080 ACAGTGCTATCAAATTGGAAATCAG 58.140 36.000 0.00 0.00 0.00 2.90
3370 5109 0.183971 TTTTTGCTTCGGTCCTGGGA 59.816 50.000 0.00 0.00 0.00 4.37
3380 5119 4.369591 TCCTGGGAGGGCCATGGT 62.370 66.667 14.67 0.00 35.59 3.55
3427 5166 3.251245 CCGGTGTTAGCATTACAACAACA 59.749 43.478 0.00 0.00 41.45 3.33
3458 5197 5.562307 GCTCATGAATATGCCACAGATGTTC 60.562 44.000 0.00 0.00 34.21 3.18
3459 5198 4.512571 TCATGAATATGCCACAGATGTTCG 59.487 41.667 0.00 0.00 34.21 3.95
3666 5409 7.872113 AATTCAAATTTTAACAACAAGGGCA 57.128 28.000 0.00 0.00 0.00 5.36
3784 5528 5.006386 AGCAAGATCAAGTTTTAGTGGGAG 58.994 41.667 0.00 0.00 0.00 4.30
3808 5552 3.706594 AGAAATAGAGTGAATGGCTCCGA 59.293 43.478 0.00 0.00 33.69 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.507622 GTGTACAAGGTAGGTTACGGACT 59.492 47.826 0.00 0.00 0.00 3.85
1 2 3.255642 TGTGTACAAGGTAGGTTACGGAC 59.744 47.826 0.00 0.00 0.00 4.79
2 3 3.495331 TGTGTACAAGGTAGGTTACGGA 58.505 45.455 0.00 0.00 0.00 4.69
3 4 3.940209 TGTGTACAAGGTAGGTTACGG 57.060 47.619 0.00 0.00 0.00 4.02
4 5 7.043854 CGAATATTGTGTACAAGGTAGGTTACG 60.044 40.741 0.00 0.00 39.47 3.18
5 6 7.975616 TCGAATATTGTGTACAAGGTAGGTTAC 59.024 37.037 0.00 0.00 39.47 2.50
6 7 7.975616 GTCGAATATTGTGTACAAGGTAGGTTA 59.024 37.037 0.00 0.00 39.47 2.85
7 8 6.815142 GTCGAATATTGTGTACAAGGTAGGTT 59.185 38.462 0.00 0.00 39.47 3.50
8 9 6.071221 TGTCGAATATTGTGTACAAGGTAGGT 60.071 38.462 0.00 0.00 39.47 3.08
9 10 6.255020 GTGTCGAATATTGTGTACAAGGTAGG 59.745 42.308 0.00 0.00 39.47 3.18
10 11 6.809689 TGTGTCGAATATTGTGTACAAGGTAG 59.190 38.462 0.00 0.00 39.47 3.18
11 12 6.689554 TGTGTCGAATATTGTGTACAAGGTA 58.310 36.000 0.00 0.00 39.47 3.08
12 13 5.543714 TGTGTCGAATATTGTGTACAAGGT 58.456 37.500 0.00 0.00 39.47 3.50
13 14 6.147164 AGTTGTGTCGAATATTGTGTACAAGG 59.853 38.462 0.00 0.00 39.47 3.61
14 15 7.116376 AGAGTTGTGTCGAATATTGTGTACAAG 59.884 37.037 0.00 0.00 39.47 3.16
15 16 6.926826 AGAGTTGTGTCGAATATTGTGTACAA 59.073 34.615 0.00 0.00 40.51 2.41
16 17 6.452242 AGAGTTGTGTCGAATATTGTGTACA 58.548 36.000 0.00 0.00 0.00 2.90
17 18 6.946229 AGAGTTGTGTCGAATATTGTGTAC 57.054 37.500 0.00 0.00 0.00 2.90
18 19 8.083462 TGTTAGAGTTGTGTCGAATATTGTGTA 58.917 33.333 0.00 0.00 0.00 2.90
19 20 6.926826 TGTTAGAGTTGTGTCGAATATTGTGT 59.073 34.615 0.00 0.00 0.00 3.72
20 21 7.328493 TCTGTTAGAGTTGTGTCGAATATTGTG 59.672 37.037 0.00 0.00 0.00 3.33
21 22 7.328737 GTCTGTTAGAGTTGTGTCGAATATTGT 59.671 37.037 0.00 0.00 0.00 2.71
22 23 7.201444 GGTCTGTTAGAGTTGTGTCGAATATTG 60.201 40.741 0.00 0.00 0.00 1.90
23 24 6.812160 GGTCTGTTAGAGTTGTGTCGAATATT 59.188 38.462 0.00 0.00 0.00 1.28
24 25 6.071560 TGGTCTGTTAGAGTTGTGTCGAATAT 60.072 38.462 0.00 0.00 0.00 1.28
25 26 5.242171 TGGTCTGTTAGAGTTGTGTCGAATA 59.758 40.000 0.00 0.00 0.00 1.75
26 27 4.038763 TGGTCTGTTAGAGTTGTGTCGAAT 59.961 41.667 0.00 0.00 0.00 3.34
27 28 3.382227 TGGTCTGTTAGAGTTGTGTCGAA 59.618 43.478 0.00 0.00 0.00 3.71
28 29 2.953648 TGGTCTGTTAGAGTTGTGTCGA 59.046 45.455 0.00 0.00 0.00 4.20
29 30 3.364889 TGGTCTGTTAGAGTTGTGTCG 57.635 47.619 0.00 0.00 0.00 4.35
30 31 6.631016 TCATATGGTCTGTTAGAGTTGTGTC 58.369 40.000 2.13 0.00 0.00 3.67
31 32 6.605471 TCATATGGTCTGTTAGAGTTGTGT 57.395 37.500 2.13 0.00 0.00 3.72
32 33 5.521735 GCTCATATGGTCTGTTAGAGTTGTG 59.478 44.000 2.13 0.00 0.00 3.33
33 34 5.423610 AGCTCATATGGTCTGTTAGAGTTGT 59.576 40.000 2.13 0.00 0.00 3.32
34 35 5.911752 AGCTCATATGGTCTGTTAGAGTTG 58.088 41.667 2.13 0.00 0.00 3.16
35 36 5.221145 CGAGCTCATATGGTCTGTTAGAGTT 60.221 44.000 15.40 0.00 32.83 3.01
36 37 4.277174 CGAGCTCATATGGTCTGTTAGAGT 59.723 45.833 15.40 0.00 32.83 3.24
37 38 4.320861 CCGAGCTCATATGGTCTGTTAGAG 60.321 50.000 15.40 0.00 32.83 2.43
38 39 3.570125 CCGAGCTCATATGGTCTGTTAGA 59.430 47.826 15.40 0.00 32.83 2.10
39 40 3.305676 CCCGAGCTCATATGGTCTGTTAG 60.306 52.174 15.40 0.00 32.83 2.34
40 41 2.628178 CCCGAGCTCATATGGTCTGTTA 59.372 50.000 15.40 0.00 32.83 2.41
41 42 1.414181 CCCGAGCTCATATGGTCTGTT 59.586 52.381 15.40 0.00 32.83 3.16
42 43 1.043816 CCCGAGCTCATATGGTCTGT 58.956 55.000 15.40 0.00 32.83 3.41
43 44 0.319728 CCCCGAGCTCATATGGTCTG 59.680 60.000 15.40 0.00 32.83 3.51
44 45 1.476007 GCCCCGAGCTCATATGGTCT 61.476 60.000 15.40 0.02 38.99 3.85
45 46 1.004440 GCCCCGAGCTCATATGGTC 60.004 63.158 15.40 0.00 38.99 4.02
46 47 2.520536 GGCCCCGAGCTCATATGGT 61.521 63.158 15.40 0.00 43.05 3.55
47 48 2.348998 GGCCCCGAGCTCATATGG 59.651 66.667 15.40 6.46 43.05 2.74
48 49 2.047844 CGGCCCCGAGCTCATATG 60.048 66.667 15.40 0.00 43.05 1.78
49 50 1.696097 AAACGGCCCCGAGCTCATAT 61.696 55.000 15.40 0.00 43.05 1.78
50 51 1.906105 AAAACGGCCCCGAGCTCATA 61.906 55.000 15.40 0.00 43.05 2.15
51 52 3.268103 AAAACGGCCCCGAGCTCAT 62.268 57.895 15.40 0.00 43.05 2.90
52 53 3.948719 AAAACGGCCCCGAGCTCA 61.949 61.111 15.40 0.00 43.05 4.26
53 54 3.431725 CAAAACGGCCCCGAGCTC 61.432 66.667 14.44 2.73 43.05 4.09
54 55 3.901797 CTCAAAACGGCCCCGAGCT 62.902 63.158 14.44 0.00 43.05 4.09
55 56 3.431725 CTCAAAACGGCCCCGAGC 61.432 66.667 14.44 0.00 42.83 5.03
56 57 1.170290 AAACTCAAAACGGCCCCGAG 61.170 55.000 14.44 2.28 42.83 4.63
57 58 1.152922 AAACTCAAAACGGCCCCGA 60.153 52.632 14.44 0.00 42.83 5.14
58 59 1.284715 GAAACTCAAAACGGCCCCG 59.715 57.895 4.96 4.96 46.03 5.73
59 60 1.663739 GGAAACTCAAAACGGCCCC 59.336 57.895 0.00 0.00 0.00 5.80
60 61 1.284715 CGGAAACTCAAAACGGCCC 59.715 57.895 0.00 0.00 0.00 5.80
61 62 1.228533 TACGGAAACTCAAAACGGCC 58.771 50.000 0.00 0.00 0.00 6.13
62 63 3.058777 TGAATACGGAAACTCAAAACGGC 60.059 43.478 0.00 0.00 0.00 5.68
63 64 4.735662 TGAATACGGAAACTCAAAACGG 57.264 40.909 0.00 0.00 0.00 4.44
64 65 7.634817 GTGATATGAATACGGAAACTCAAAACG 59.365 37.037 0.00 0.00 0.00 3.60
65 66 7.908601 GGTGATATGAATACGGAAACTCAAAAC 59.091 37.037 0.00 0.00 0.00 2.43
66 67 7.827236 AGGTGATATGAATACGGAAACTCAAAA 59.173 33.333 0.00 0.00 0.00 2.44
67 68 7.335627 AGGTGATATGAATACGGAAACTCAAA 58.664 34.615 0.00 0.00 0.00 2.69
68 69 6.884832 AGGTGATATGAATACGGAAACTCAA 58.115 36.000 0.00 0.00 0.00 3.02
69 70 6.479972 AGGTGATATGAATACGGAAACTCA 57.520 37.500 0.00 0.00 0.00 3.41
70 71 7.787725 AAAGGTGATATGAATACGGAAACTC 57.212 36.000 0.00 0.00 0.00 3.01
71 72 8.458843 CAAAAAGGTGATATGAATACGGAAACT 58.541 33.333 0.00 0.00 0.00 2.66
72 73 8.455682 TCAAAAAGGTGATATGAATACGGAAAC 58.544 33.333 0.00 0.00 0.00 2.78
73 74 8.568676 TCAAAAAGGTGATATGAATACGGAAA 57.431 30.769 0.00 0.00 0.00 3.13
74 75 8.568676 TTCAAAAAGGTGATATGAATACGGAA 57.431 30.769 0.00 0.00 0.00 4.30
75 76 8.746052 ATTCAAAAAGGTGATATGAATACGGA 57.254 30.769 0.00 0.00 38.55 4.69
76 77 9.450807 GAATTCAAAAAGGTGATATGAATACGG 57.549 33.333 0.00 0.00 39.19 4.02
166 168 9.520515 AAGATGTTCCAGTGTGTTCTTTTATAT 57.479 29.630 0.00 0.00 0.00 0.86
182 184 8.106247 GTTTAACAACCATCTAAGATGTTCCA 57.894 34.615 0.00 0.00 35.89 3.53
212 214 1.292541 GGTGTCTCCCTCGACAACC 59.707 63.158 0.00 0.00 44.00 3.77
213 215 4.990288 GGTGTCTCCCTCGACAAC 57.010 61.111 0.00 0.00 44.73 3.32
224 226 1.956869 TCCTCATGATGGTGGTGTCT 58.043 50.000 0.00 0.00 0.00 3.41
225 227 3.287867 AATCCTCATGATGGTGGTGTC 57.712 47.619 0.00 0.00 32.68 3.67
227 229 3.623703 TGAAATCCTCATGATGGTGGTG 58.376 45.455 0.00 0.00 32.68 4.17
233 235 8.859236 AACTATGGTATGAAATCCTCATGATG 57.141 34.615 0.00 0.00 44.84 3.07
238 240 9.778741 GACATAAACTATGGTATGAAATCCTCA 57.221 33.333 0.00 0.00 40.47 3.86
249 259 8.637196 ATCGATCAGAGACATAAACTATGGTA 57.363 34.615 0.00 0.00 40.47 3.25
261 271 2.102578 TGGCAAGATCGATCAGAGACA 58.897 47.619 26.47 19.71 0.00 3.41
267 277 3.264998 TGAACATGGCAAGATCGATCA 57.735 42.857 26.47 7.19 0.00 2.92
279 289 5.869344 TCTTCTACTTTGTCGATGAACATGG 59.131 40.000 0.00 0.00 0.00 3.66
292 302 7.515841 CGGATCGTCATTTCATCTTCTACTTTG 60.516 40.741 0.00 0.00 0.00 2.77
303 313 2.695666 AGAGGTCGGATCGTCATTTCAT 59.304 45.455 0.00 0.00 0.00 2.57
311 321 1.109920 CCATGGAGAGGTCGGATCGT 61.110 60.000 5.56 0.00 0.00 3.73
340 350 2.613725 CGTTGTTCCCCAGTAAGTACCC 60.614 54.545 0.00 0.00 0.00 3.69
341 351 2.691927 CGTTGTTCCCCAGTAAGTACC 58.308 52.381 0.00 0.00 0.00 3.34
344 930 0.470766 TGCGTTGTTCCCCAGTAAGT 59.529 50.000 0.00 0.00 0.00 2.24
352 938 2.589442 TGGTCGTGCGTTGTTCCC 60.589 61.111 0.00 0.00 0.00 3.97
353 939 1.557443 CTCTGGTCGTGCGTTGTTCC 61.557 60.000 0.00 0.00 0.00 3.62
360 946 2.103143 CTAGGCTCTGGTCGTGCG 59.897 66.667 0.00 0.00 33.03 5.34
363 949 0.972983 ATGTGCTAGGCTCTGGTCGT 60.973 55.000 0.00 0.00 0.00 4.34
366 952 1.680522 CCGATGTGCTAGGCTCTGGT 61.681 60.000 0.00 0.00 0.00 4.00
367 953 1.068753 CCGATGTGCTAGGCTCTGG 59.931 63.158 0.00 0.00 0.00 3.86
373 959 2.586079 CACCGCCGATGTGCTAGG 60.586 66.667 0.00 0.00 0.00 3.02
388 974 3.562232 TGGGTGGGTTCCGGTCAC 61.562 66.667 0.00 6.40 0.00 3.67
403 989 1.475751 GGCAGACATGGACATAGGTGG 60.476 57.143 0.00 0.00 0.00 4.61
407 993 1.683385 TCGAGGCAGACATGGACATAG 59.317 52.381 0.00 0.00 0.00 2.23
411 997 0.532573 TTCTCGAGGCAGACATGGAC 59.467 55.000 13.56 0.00 0.00 4.02
434 1020 1.666189 GCTCCTACAATCGCAAGGTTC 59.334 52.381 0.00 0.00 39.91 3.62
442 1028 5.233050 CACTATTGAACTGCTCCTACAATCG 59.767 44.000 0.00 0.00 33.99 3.34
456 1669 2.476619 CGGATCGCCATCACTATTGAAC 59.523 50.000 0.00 0.00 34.61 3.18
460 1673 0.320771 GCCGGATCGCCATCACTATT 60.321 55.000 5.05 0.00 0.00 1.73
482 1695 1.553248 AGCCATGTAGTTGTTCCGCTA 59.447 47.619 0.00 0.00 0.00 4.26
486 1699 4.941263 TGTAATCAGCCATGTAGTTGTTCC 59.059 41.667 0.00 0.00 0.00 3.62
502 1715 1.760613 CCGGGTTAGGCTCTGTAATCA 59.239 52.381 0.00 0.00 0.00 2.57
541 1755 7.234384 ACTGTATTTGCGTAATCTTTTCTTCG 58.766 34.615 0.00 0.00 0.00 3.79
543 1757 9.216117 ACTACTGTATTTGCGTAATCTTTTCTT 57.784 29.630 0.00 0.00 0.00 2.52
544 1758 8.773404 ACTACTGTATTTGCGTAATCTTTTCT 57.227 30.769 0.00 0.00 0.00 2.52
563 1777 2.358898 AGGCAAGCACACAAAACTACTG 59.641 45.455 0.00 0.00 0.00 2.74
564 1778 2.618709 GAGGCAAGCACACAAAACTACT 59.381 45.455 0.00 0.00 0.00 2.57
565 1779 2.287608 GGAGGCAAGCACACAAAACTAC 60.288 50.000 0.00 0.00 0.00 2.73
566 1780 1.953686 GGAGGCAAGCACACAAAACTA 59.046 47.619 0.00 0.00 0.00 2.24
568 1782 0.459489 TGGAGGCAAGCACACAAAAC 59.541 50.000 0.00 0.00 0.00 2.43
569 1783 1.412079 ATGGAGGCAAGCACACAAAA 58.588 45.000 0.00 0.00 0.00 2.44
570 1784 2.284754 TATGGAGGCAAGCACACAAA 57.715 45.000 0.00 0.00 0.00 2.83
571 1785 2.161855 CTTATGGAGGCAAGCACACAA 58.838 47.619 0.00 0.00 0.00 3.33
572 1786 1.825090 CTTATGGAGGCAAGCACACA 58.175 50.000 0.00 0.00 0.00 3.72
573 1787 0.453390 GCTTATGGAGGCAAGCACAC 59.547 55.000 2.00 0.00 45.20 3.82
588 1802 1.347378 TGGCATAGCGGATGATGCTTA 59.653 47.619 6.79 0.00 46.27 3.09
591 1805 0.953727 TTTGGCATAGCGGATGATGC 59.046 50.000 5.89 4.36 46.31 3.91
592 1806 1.538512 CCTTTGGCATAGCGGATGATG 59.461 52.381 5.89 0.00 37.82 3.07
606 2177 3.373565 GGTTGGCTCGCCCTTTGG 61.374 66.667 5.33 0.00 34.56 3.28
607 2178 3.737172 CGGTTGGCTCGCCCTTTG 61.737 66.667 5.33 0.00 34.56 2.77
626 2197 2.039746 AGAATCATCGGTTCCACCAACA 59.960 45.455 0.00 0.00 38.47 3.33
627 2198 2.678336 GAGAATCATCGGTTCCACCAAC 59.322 50.000 0.00 0.00 34.00 3.77
633 2204 3.184581 GCAATACGAGAATCATCGGTTCC 59.815 47.826 0.91 0.00 46.91 3.62
634 2205 3.184581 GGCAATACGAGAATCATCGGTTC 59.815 47.826 0.91 0.00 46.91 3.62
635 2206 3.131396 GGCAATACGAGAATCATCGGTT 58.869 45.455 0.91 0.00 46.91 4.44
636 2207 2.102420 TGGCAATACGAGAATCATCGGT 59.898 45.455 0.91 0.00 46.91 4.69
637 2208 2.733552 CTGGCAATACGAGAATCATCGG 59.266 50.000 0.91 0.00 46.91 4.18
639 2210 3.426859 CGACTGGCAATACGAGAATCATC 59.573 47.826 0.00 0.00 33.17 2.92
640 2211 3.384668 CGACTGGCAATACGAGAATCAT 58.615 45.455 0.00 0.00 33.17 2.45
641 2212 2.481276 CCGACTGGCAATACGAGAATCA 60.481 50.000 8.71 0.00 33.17 2.57
642 2213 2.128035 CCGACTGGCAATACGAGAATC 58.872 52.381 8.71 0.00 0.00 2.52
643 2214 1.202533 CCCGACTGGCAATACGAGAAT 60.203 52.381 8.71 0.00 0.00 2.40
644 2215 0.174845 CCCGACTGGCAATACGAGAA 59.825 55.000 8.71 0.00 0.00 2.87
645 2216 0.681887 TCCCGACTGGCAATACGAGA 60.682 55.000 8.71 0.00 0.00 4.04
646 2217 0.249073 CTCCCGACTGGCAATACGAG 60.249 60.000 8.71 0.00 0.00 4.18
647 2218 0.681887 TCTCCCGACTGGCAATACGA 60.682 55.000 8.71 0.00 0.00 3.43
648 2219 0.249073 CTCTCCCGACTGGCAATACG 60.249 60.000 0.00 0.00 0.00 3.06
649 2220 0.105039 CCTCTCCCGACTGGCAATAC 59.895 60.000 0.00 0.00 0.00 1.89
650 2221 0.032515 TCCTCTCCCGACTGGCAATA 60.033 55.000 0.00 0.00 0.00 1.90
651 2222 0.909610 TTCCTCTCCCGACTGGCAAT 60.910 55.000 0.00 0.00 0.00 3.56
652 2223 1.535444 TTCCTCTCCCGACTGGCAA 60.535 57.895 0.00 0.00 0.00 4.52
653 2224 1.984570 CTTCCTCTCCCGACTGGCA 60.985 63.158 0.00 0.00 0.00 4.92
654 2225 2.726351 CCTTCCTCTCCCGACTGGC 61.726 68.421 0.00 0.00 0.00 4.85
655 2226 2.726351 GCCTTCCTCTCCCGACTGG 61.726 68.421 0.00 0.00 0.00 4.00
656 2227 2.896443 GCCTTCCTCTCCCGACTG 59.104 66.667 0.00 0.00 0.00 3.51
657 2228 2.756283 CGCCTTCCTCTCCCGACT 60.756 66.667 0.00 0.00 0.00 4.18
658 2229 3.839432 CCGCCTTCCTCTCCCGAC 61.839 72.222 0.00 0.00 0.00 4.79
659 2230 4.377760 ACCGCCTTCCTCTCCCGA 62.378 66.667 0.00 0.00 0.00 5.14
660 2231 4.148825 CACCGCCTTCCTCTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
661 2232 4.475135 GCACCGCCTTCCTCTCCC 62.475 72.222 0.00 0.00 0.00 4.30
662 2233 2.748058 TTTGCACCGCCTTCCTCTCC 62.748 60.000 0.00 0.00 0.00 3.71
663 2234 1.301677 CTTTGCACCGCCTTCCTCTC 61.302 60.000 0.00 0.00 0.00 3.20
664 2235 1.302832 CTTTGCACCGCCTTCCTCT 60.303 57.895 0.00 0.00 0.00 3.69
665 2236 0.678048 ATCTTTGCACCGCCTTCCTC 60.678 55.000 0.00 0.00 0.00 3.71
666 2237 0.962356 CATCTTTGCACCGCCTTCCT 60.962 55.000 0.00 0.00 0.00 3.36
667 2238 1.508088 CATCTTTGCACCGCCTTCC 59.492 57.895 0.00 0.00 0.00 3.46
677 2248 1.424493 CTCCTCGACCGCATCTTTGC 61.424 60.000 0.00 0.00 45.78 3.68
678 2249 0.173481 TCTCCTCGACCGCATCTTTG 59.827 55.000 0.00 0.00 0.00 2.77
679 2250 0.457851 CTCTCCTCGACCGCATCTTT 59.542 55.000 0.00 0.00 0.00 2.52
680 2251 0.681564 ACTCTCCTCGACCGCATCTT 60.682 55.000 0.00 0.00 0.00 2.40
681 2252 1.077357 ACTCTCCTCGACCGCATCT 60.077 57.895 0.00 0.00 0.00 2.90
682 2253 1.064946 CACTCTCCTCGACCGCATC 59.935 63.158 0.00 0.00 0.00 3.91
683 2254 1.378646 TCACTCTCCTCGACCGCAT 60.379 57.895 0.00 0.00 0.00 4.73
684 2255 2.033602 TCACTCTCCTCGACCGCA 59.966 61.111 0.00 0.00 0.00 5.69
685 2256 2.486042 GTCACTCTCCTCGACCGC 59.514 66.667 0.00 0.00 0.00 5.68
686 2257 1.296755 TTCGTCACTCTCCTCGACCG 61.297 60.000 0.00 0.00 32.14 4.79
687 2258 0.448593 CTTCGTCACTCTCCTCGACC 59.551 60.000 0.00 0.00 32.14 4.79
688 2259 0.448593 CCTTCGTCACTCTCCTCGAC 59.551 60.000 0.00 0.00 32.14 4.20
689 2260 0.036448 ACCTTCGTCACTCTCCTCGA 59.964 55.000 0.00 0.00 0.00 4.04
690 2261 0.882474 AACCTTCGTCACTCTCCTCG 59.118 55.000 0.00 0.00 0.00 4.63
691 2262 2.296471 TGAAACCTTCGTCACTCTCCTC 59.704 50.000 0.00 0.00 0.00 3.71
692 2263 2.317040 TGAAACCTTCGTCACTCTCCT 58.683 47.619 0.00 0.00 0.00 3.69
693 2264 2.814280 TGAAACCTTCGTCACTCTCC 57.186 50.000 0.00 0.00 0.00 3.71
700 2271 2.996621 CCACTCTGATGAAACCTTCGTC 59.003 50.000 2.30 2.30 44.20 4.20
701 2272 2.632996 TCCACTCTGATGAAACCTTCGT 59.367 45.455 0.00 0.00 0.00 3.85
702 2273 2.996621 GTCCACTCTGATGAAACCTTCG 59.003 50.000 0.00 0.00 0.00 3.79
703 2274 2.996621 CGTCCACTCTGATGAAACCTTC 59.003 50.000 0.00 0.00 0.00 3.46
704 2275 2.632996 TCGTCCACTCTGATGAAACCTT 59.367 45.455 0.00 0.00 0.00 3.50
705 2276 2.248248 TCGTCCACTCTGATGAAACCT 58.752 47.619 0.00 0.00 0.00 3.50
706 2277 2.743636 TCGTCCACTCTGATGAAACC 57.256 50.000 0.00 0.00 0.00 3.27
707 2278 3.190874 GGATCGTCCACTCTGATGAAAC 58.809 50.000 0.00 0.00 36.28 2.78
708 2279 2.831526 TGGATCGTCCACTCTGATGAAA 59.168 45.455 3.02 0.00 42.67 2.69
709 2280 2.456577 TGGATCGTCCACTCTGATGAA 58.543 47.619 3.02 0.00 42.67 2.57
710 2281 2.143876 TGGATCGTCCACTCTGATGA 57.856 50.000 3.02 0.00 42.67 2.92
720 2291 2.550978 CACAACTACCATGGATCGTCC 58.449 52.381 21.47 0.00 36.96 4.79
721 2292 1.933853 GCACAACTACCATGGATCGTC 59.066 52.381 21.47 0.00 0.00 4.20
722 2293 1.406887 GGCACAACTACCATGGATCGT 60.407 52.381 21.47 9.13 0.00 3.73
723 2294 1.134401 AGGCACAACTACCATGGATCG 60.134 52.381 21.47 8.44 0.00 3.69
724 2295 2.292267 CAGGCACAACTACCATGGATC 58.708 52.381 21.47 0.00 0.00 3.36
725 2296 1.635487 ACAGGCACAACTACCATGGAT 59.365 47.619 21.47 5.32 0.00 3.41
726 2297 1.064003 ACAGGCACAACTACCATGGA 58.936 50.000 21.47 0.67 0.00 3.41
727 2298 1.167851 CACAGGCACAACTACCATGG 58.832 55.000 11.19 11.19 0.00 3.66
728 2299 1.167851 CCACAGGCACAACTACCATG 58.832 55.000 0.00 0.00 0.00 3.66
729 2300 0.771127 ACCACAGGCACAACTACCAT 59.229 50.000 0.00 0.00 0.00 3.55
730 2301 0.179032 CACCACAGGCACAACTACCA 60.179 55.000 0.00 0.00 0.00 3.25
731 2302 1.515521 GCACCACAGGCACAACTACC 61.516 60.000 0.00 0.00 0.00 3.18
732 2303 0.817634 TGCACCACAGGCACAACTAC 60.818 55.000 0.00 0.00 36.11 2.73
733 2304 1.529309 TGCACCACAGGCACAACTA 59.471 52.632 0.00 0.00 36.11 2.24
734 2305 2.275089 TGCACCACAGGCACAACT 59.725 55.556 0.00 0.00 36.11 3.16
742 2313 3.663176 CTTGGCCGTGCACCACAG 61.663 66.667 12.15 0.00 36.76 3.66
762 2333 3.501396 GGTGTGTGCCGATCATGG 58.499 61.111 0.00 0.00 0.00 3.66
770 2341 4.030452 GCTTCTGCGGTGTGTGCC 62.030 66.667 0.00 0.00 0.00 5.01
804 2526 0.105964 TTATCGTTCGCCTCCCCATG 59.894 55.000 0.00 0.00 0.00 3.66
806 2528 1.518774 GTTATCGTTCGCCTCCCCA 59.481 57.895 0.00 0.00 0.00 4.96
808 2530 1.227468 GGGTTATCGTTCGCCTCCC 60.227 63.158 0.00 0.00 0.00 4.30
809 2531 1.590792 CGGGTTATCGTTCGCCTCC 60.591 63.158 0.00 0.00 0.00 4.30
810 2532 1.590792 CCGGGTTATCGTTCGCCTC 60.591 63.158 0.00 0.00 0.00 4.70
830 2552 3.181449 CGACTCCTCCATCTCTCTCCTAA 60.181 52.174 0.00 0.00 0.00 2.69
835 2557 1.843851 AGTCGACTCCTCCATCTCTCT 59.156 52.381 13.58 0.00 0.00 3.10
837 2559 2.341846 GAGTCGACTCCTCCATCTCT 57.658 55.000 31.24 0.00 37.02 3.10
848 2570 2.834549 AGTTTGATCCATGGAGTCGACT 59.165 45.455 20.18 20.18 0.00 4.18
850 2572 3.515502 AGAAGTTTGATCCATGGAGTCGA 59.484 43.478 21.33 13.99 0.00 4.20
851 2573 3.866651 AGAAGTTTGATCCATGGAGTCG 58.133 45.455 21.33 0.00 0.00 4.18
852 2574 4.813697 GCTAGAAGTTTGATCCATGGAGTC 59.186 45.833 21.33 16.94 0.00 3.36
853 2575 4.681781 CGCTAGAAGTTTGATCCATGGAGT 60.682 45.833 21.33 8.47 0.00 3.85
854 2576 3.806521 CGCTAGAAGTTTGATCCATGGAG 59.193 47.826 21.33 2.66 0.00 3.86
857 2579 3.002042 CAGCGCTAGAAGTTTGATCCATG 59.998 47.826 10.99 0.00 0.00 3.66
858 2580 3.201290 CAGCGCTAGAAGTTTGATCCAT 58.799 45.455 10.99 0.00 0.00 3.41
859 2581 2.621338 CAGCGCTAGAAGTTTGATCCA 58.379 47.619 10.99 0.00 0.00 3.41
860 2582 1.328986 GCAGCGCTAGAAGTTTGATCC 59.671 52.381 10.99 0.00 0.00 3.36
861 2583 2.030213 CAGCAGCGCTAGAAGTTTGATC 59.970 50.000 10.99 0.00 36.40 2.92
862 2584 2.005451 CAGCAGCGCTAGAAGTTTGAT 58.995 47.619 10.99 0.00 36.40 2.57
863 2585 1.432514 CAGCAGCGCTAGAAGTTTGA 58.567 50.000 10.99 0.00 36.40 2.69
864 2586 0.179205 GCAGCAGCGCTAGAAGTTTG 60.179 55.000 10.99 0.00 36.40 2.93
865 2587 1.301677 GGCAGCAGCGCTAGAAGTTT 61.302 55.000 10.99 0.00 43.41 2.66
866 2588 1.743252 GGCAGCAGCGCTAGAAGTT 60.743 57.895 10.99 0.00 43.41 2.66
869 2591 4.819761 CCGGCAGCAGCGCTAGAA 62.820 66.667 10.99 0.00 43.41 2.10
889 2611 0.453615 GATCGGTAGATCGAGCAGCG 60.454 60.000 15.14 15.14 43.89 5.18
890 2612 3.393112 GATCGGTAGATCGAGCAGC 57.607 57.895 2.38 0.00 43.89 5.25
898 2620 5.045066 TGCCTACTGTATAGGATCGGTAGAT 60.045 44.000 11.27 0.00 42.67 1.98
899 2621 4.287845 TGCCTACTGTATAGGATCGGTAGA 59.712 45.833 11.27 0.00 42.67 2.59
900 2622 4.395542 GTGCCTACTGTATAGGATCGGTAG 59.604 50.000 4.11 0.00 40.90 3.18
901 2623 4.202493 TGTGCCTACTGTATAGGATCGGTA 60.202 45.833 4.11 0.00 36.85 4.02
902 2624 3.155501 GTGCCTACTGTATAGGATCGGT 58.844 50.000 4.11 0.00 36.85 4.69
903 2625 3.154710 TGTGCCTACTGTATAGGATCGG 58.845 50.000 4.11 0.00 36.85 4.18
904 2626 3.191581 CCTGTGCCTACTGTATAGGATCG 59.808 52.174 4.11 0.00 39.83 3.69
905 2627 4.153411 ACCTGTGCCTACTGTATAGGATC 58.847 47.826 4.11 0.00 39.83 3.36
906 2628 4.153411 GACCTGTGCCTACTGTATAGGAT 58.847 47.826 4.11 0.00 39.83 3.24
907 2629 3.563223 GACCTGTGCCTACTGTATAGGA 58.437 50.000 4.11 0.00 39.83 2.94
908 2630 2.293677 CGACCTGTGCCTACTGTATAGG 59.706 54.545 0.00 0.00 42.53 2.57
909 2631 2.287668 GCGACCTGTGCCTACTGTATAG 60.288 54.545 0.00 0.00 0.00 1.31
910 2632 1.679680 GCGACCTGTGCCTACTGTATA 59.320 52.381 0.00 0.00 0.00 1.47
911 2633 0.460311 GCGACCTGTGCCTACTGTAT 59.540 55.000 0.00 0.00 0.00 2.29
912 2634 0.896479 TGCGACCTGTGCCTACTGTA 60.896 55.000 0.00 0.00 0.00 2.74
913 2635 1.544825 ATGCGACCTGTGCCTACTGT 61.545 55.000 0.00 0.00 0.00 3.55
914 2636 1.086067 CATGCGACCTGTGCCTACTG 61.086 60.000 0.00 0.00 0.00 2.74
915 2637 1.219124 CATGCGACCTGTGCCTACT 59.781 57.895 0.00 0.00 0.00 2.57
916 2638 0.391130 TTCATGCGACCTGTGCCTAC 60.391 55.000 0.00 0.00 0.00 3.18
917 2639 0.391130 GTTCATGCGACCTGTGCCTA 60.391 55.000 0.00 0.00 0.00 3.93
918 2640 1.672356 GTTCATGCGACCTGTGCCT 60.672 57.895 0.00 0.00 0.00 4.75
919 2641 2.690778 GGTTCATGCGACCTGTGCC 61.691 63.158 9.96 0.00 34.27 5.01
920 2642 1.965930 TGGTTCATGCGACCTGTGC 60.966 57.895 16.07 0.00 38.04 4.57
921 2643 1.868997 GTGGTTCATGCGACCTGTG 59.131 57.895 16.07 0.00 38.04 3.66
922 2644 1.667830 CGTGGTTCATGCGACCTGT 60.668 57.895 16.07 0.00 38.04 4.00
923 2645 2.390599 CCGTGGTTCATGCGACCTG 61.391 63.158 16.07 10.13 38.04 4.00
933 2655 2.774687 ACTGGACATAAACCGTGGTTC 58.225 47.619 4.46 0.00 37.35 3.62
969 2691 3.735591 TGGGCTTGAGTAACAACACTAC 58.264 45.455 0.00 0.00 34.56 2.73
1177 2899 4.467107 GAGGCGGAGGAGGAGGGT 62.467 72.222 0.00 0.00 0.00 4.34
1269 2991 1.682684 GAGGAGGGAGTTGGCGAGA 60.683 63.158 0.00 0.00 0.00 4.04
1812 3534 0.895530 ACCTGGTGTACATCTCCACG 59.104 55.000 7.81 3.40 36.02 4.94
1815 3537 0.460284 CGCACCTGGTGTACATCTCC 60.460 60.000 26.48 7.62 35.75 3.71
1836 3558 1.937546 GCTCGGCCAGGTCCATTTTG 61.938 60.000 2.24 0.00 0.00 2.44
1888 3610 0.681887 AGCATGGCATTGTAGCAGCA 60.682 50.000 9.78 0.00 35.83 4.41
1940 3662 1.341482 TGTCAAACAAGGTGAGGGCAA 60.341 47.619 0.00 0.00 0.00 4.52
2051 3773 1.066573 CCATTCTGTCGAAGAGCCACT 60.067 52.381 0.00 0.00 36.95 4.00
2145 3867 1.002430 AGCTTCTCGGCAACATCAAGA 59.998 47.619 0.00 0.00 34.17 3.02
2248 3970 2.520188 TGGATCATCCTCTCCCCAAT 57.480 50.000 4.96 0.00 37.46 3.16
2261 3983 1.140452 GCCTCATCAGCTCTTGGATCA 59.860 52.381 0.00 0.00 0.00 2.92
2304 4026 3.327757 AGAAGTTGGACAGCAGGACATAA 59.672 43.478 0.00 0.00 0.00 1.90
2339 4061 1.906574 TCTTTGCGTCCTCCCATAGTT 59.093 47.619 0.00 0.00 0.00 2.24
2425 4147 6.012113 TCAAGAATTCATGGAGAACACCATT 58.988 36.000 10.57 0.00 47.00 3.16
2494 4216 4.792513 ATCTGGCTTGGATCTCTTGAAT 57.207 40.909 0.00 0.00 0.00 2.57
2506 4228 2.479049 CGCATTCCTTCAATCTGGCTTG 60.479 50.000 0.00 0.00 0.00 4.01
2508 4230 1.386533 CGCATTCCTTCAATCTGGCT 58.613 50.000 0.00 0.00 0.00 4.75
2580 4302 4.757773 TAGGACAGCGCACCTACT 57.242 55.556 19.03 9.61 37.68 2.57
2585 4307 1.738099 CTGTGGTAGGACAGCGCAC 60.738 63.158 11.47 0.00 40.11 5.34
2846 4568 6.092955 ACAAGTAGGAACACGAATCTACAA 57.907 37.500 0.00 0.00 35.75 2.41
3029 4751 4.074259 TCATCCTTGACACTTGACATTGG 58.926 43.478 0.00 0.00 0.00 3.16
3237 4967 0.035630 AGCTCCACCACTGAATGCTC 60.036 55.000 0.00 0.00 0.00 4.26
3250 4980 3.149196 CAGCTTTTCTTTGGTAGCTCCA 58.851 45.455 0.00 0.00 41.76 3.86
3300 5039 5.856156 ACAATGCACTGATTTCCAATTTGA 58.144 33.333 0.26 0.00 0.00 2.69
3301 5040 6.017770 ACAACAATGCACTGATTTCCAATTTG 60.018 34.615 0.26 0.00 0.00 2.32
3302 5041 6.017770 CACAACAATGCACTGATTTCCAATTT 60.018 34.615 0.26 0.00 0.00 1.82
3303 5042 5.467399 CACAACAATGCACTGATTTCCAATT 59.533 36.000 0.26 0.00 0.00 2.32
3304 5043 4.992319 CACAACAATGCACTGATTTCCAAT 59.008 37.500 0.26 0.00 0.00 3.16
3305 5044 4.141981 ACACAACAATGCACTGATTTCCAA 60.142 37.500 0.26 0.00 0.00 3.53
3306 5045 3.384146 ACACAACAATGCACTGATTTCCA 59.616 39.130 0.26 0.00 0.00 3.53
3307 5046 3.737266 CACACAACAATGCACTGATTTCC 59.263 43.478 0.26 0.00 0.00 3.13
3308 5047 3.182972 GCACACAACAATGCACTGATTTC 59.817 43.478 0.26 0.00 41.65 2.17
3315 5054 0.598158 CCCAGCACACAACAATGCAC 60.598 55.000 0.00 0.00 44.59 4.57
3370 5109 3.492353 CGGATGGACCATGGCCCT 61.492 66.667 18.96 10.37 38.90 5.19
3427 5166 3.082548 GGCATATTCATGAGCTGAGCAT 58.917 45.455 7.39 0.00 34.68 3.79
3666 5409 1.228675 CAGCTTGGGCAAACCTCCT 60.229 57.895 0.00 0.00 41.70 3.69
3784 5528 4.384940 GGAGCCATTCACTCTATTTCTCC 58.615 47.826 0.00 0.00 34.46 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.