Multiple sequence alignment - TraesCS4D01G124800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G124800 chr4D 100.000 4301 0 0 1 4301 109217771 109213471 0.000000e+00 7943.0
1 TraesCS4D01G124800 chr4D 100.000 49 0 0 3769 3817 109213952 109213904 1.650000e-14 91.6
2 TraesCS4D01G124800 chr4D 100.000 49 0 0 3820 3868 109214003 109213955 1.650000e-14 91.6
3 TraesCS4D01G124800 chr4A 93.918 3091 131 23 783 3821 467296423 467299508 0.000000e+00 4614.0
4 TraesCS4D01G124800 chr4A 91.925 805 43 13 3 789 467295574 467296374 0.000000e+00 1107.0
5 TraesCS4D01G124800 chr4A 91.566 249 21 0 3893 4141 467299455 467299703 1.150000e-90 344.0
6 TraesCS4D01G124800 chr4B 95.709 2051 83 4 1383 3432 167391786 167393832 0.000000e+00 3295.0
7 TraesCS4D01G124800 chr4B 90.223 716 33 16 1 695 167388523 167389222 0.000000e+00 900.0
8 TraesCS4D01G124800 chr4B 86.111 612 60 18 794 1386 167389436 167390041 1.690000e-178 636.0
9 TraesCS4D01G124800 chr4B 93.814 388 15 5 3429 3808 167393916 167394302 3.730000e-160 575.0
10 TraesCS4D01G124800 chr4B 92.513 187 12 1 3893 4079 167394261 167394445 2.550000e-67 267.0
11 TraesCS4D01G124800 chr4B 92.982 57 2 1 3820 3876 167394263 167394317 9.910000e-12 82.4
12 TraesCS4D01G124800 chr2D 94.776 134 7 0 4168 4301 271523610 271523477 4.360000e-50 209.0
13 TraesCS4D01G124800 chr2D 92.647 136 10 0 4166 4301 239590585 239590720 3.390000e-46 196.0
14 TraesCS4D01G124800 chr2D 92.537 134 10 0 4168 4301 240022628 240022761 4.390000e-45 193.0
15 TraesCS4D01G124800 chr2D 91.852 135 11 0 4167 4301 194040145 194040011 5.680000e-44 189.0
16 TraesCS4D01G124800 chr2D 91.852 135 11 0 4167 4301 259396791 259396657 5.680000e-44 189.0
17 TraesCS4D01G124800 chr2D 91.852 135 11 0 4167 4301 271516479 271516345 5.680000e-44 189.0
18 TraesCS4D01G124800 chr5D 93.333 135 8 1 4167 4301 114455343 114455476 9.430000e-47 198.0
19 TraesCS4D01G124800 chr2A 92.537 134 10 0 4168 4301 191873634 191873501 4.390000e-45 193.0
20 TraesCS4D01G124800 chr6D 91.791 134 11 0 4168 4301 268402741 268402608 2.040000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G124800 chr4D 109213471 109217771 4300 True 2708.733333 7943 100.000000 1 4301 3 chr4D.!!$R1 4300
1 TraesCS4D01G124800 chr4A 467295574 467299703 4129 False 2021.666667 4614 92.469667 3 4141 3 chr4A.!!$F1 4138
2 TraesCS4D01G124800 chr4B 167388523 167394445 5922 False 959.233333 3295 91.892000 1 4079 6 chr4B.!!$F1 4078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 1007 0.108186 TGCTCGCATGGTCACCTTAG 60.108 55.0 0.00 0.0 0.00 2.18 F
1195 1368 0.179156 GGTCATCGTCTTAACCGCGA 60.179 55.0 8.23 0.0 39.02 5.87 F
2540 4476 0.034670 GAGCAGGAAGGGAGCAATGT 60.035 55.0 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 3810 0.322008 GGAAAGCTGACCAGTCCCTG 60.322 60.0 4.79 0.00 0.00 4.45 R
3137 5073 0.101399 CTCCTCGACCGAGACATTGG 59.899 60.0 19.70 4.12 44.53 3.16 R
4239 6287 0.035820 GTTGAAGATGGGCCGTACCA 60.036 55.0 0.00 0.00 46.24 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 106 4.518970 CACATGATGATGCTCCATGATCAA 59.481 41.667 10.51 0.00 44.64 2.57
101 107 5.183904 CACATGATGATGCTCCATGATCAAT 59.816 40.000 10.51 1.68 44.64 2.57
102 108 5.416013 ACATGATGATGCTCCATGATCAATC 59.584 40.000 10.51 0.00 44.64 2.67
103 109 4.980573 TGATGATGCTCCATGATCAATCA 58.019 39.130 0.00 3.57 40.38 2.57
189 201 3.250762 TGCACACTCTGTATCTGCAAAAC 59.749 43.478 0.00 0.00 0.00 2.43
194 206 4.391216 CACTCTGTATCTGCAAAACTCAGG 59.609 45.833 0.00 0.00 32.63 3.86
197 209 3.689347 TGTATCTGCAAAACTCAGGCAT 58.311 40.909 0.00 0.00 36.87 4.40
264 276 6.790232 TTCTTCTTCTTGGGAAAACAATGT 57.210 33.333 0.00 0.00 0.00 2.71
299 311 2.807837 CGAGCCAATGATCTGCATGGTA 60.808 50.000 3.82 0.00 37.28 3.25
383 395 5.154222 CGCTGTTTTGAAGGAGGAAATAAC 58.846 41.667 0.00 0.00 0.00 1.89
427 439 5.220989 GGCTAAAGAAAAAGTCGACCAAAGT 60.221 40.000 13.01 0.00 0.00 2.66
430 442 7.586664 GCTAAAGAAAAAGTCGACCAAAGTAAG 59.413 37.037 13.01 1.48 0.00 2.34
431 443 7.619964 AAAGAAAAAGTCGACCAAAGTAAGA 57.380 32.000 13.01 0.00 0.00 2.10
460 481 4.486503 CAGGGAGGCAGGCAGAGC 62.487 72.222 0.00 0.00 0.00 4.09
556 585 3.965539 CTTCAGGCAGCCGAGGGTG 62.966 68.421 16.27 16.27 45.36 4.61
568 597 1.737008 GAGGGTGTCGGACTTTCGC 60.737 63.158 9.88 8.24 0.00 4.70
620 653 1.008079 GGTGTGTGCTTCTTGCTGC 60.008 57.895 0.00 0.00 43.37 5.25
627 660 3.036783 GCTTCTTGCTGCGCTCTGG 62.037 63.158 9.73 0.00 38.95 3.86
707 744 2.488153 CCGTCCAATTTTCTCAACCCTC 59.512 50.000 0.00 0.00 0.00 4.30
728 766 5.235305 TCGCTAGATTCCATTTGCTTTTC 57.765 39.130 0.00 0.00 0.00 2.29
742 807 6.530019 TTTGCTTTTCTTTTCCTGTCTCTT 57.470 33.333 0.00 0.00 0.00 2.85
777 842 7.161404 TGATATCAGGCGCTTATAACTGAAAT 58.839 34.615 14.34 3.81 42.55 2.17
785 850 8.784043 AGGCGCTTATAACTGAAATTTAATAGG 58.216 33.333 7.64 0.00 0.00 2.57
787 852 8.780249 GCGCTTATAACTGAAATTTAATAGGGA 58.220 33.333 0.00 0.00 0.00 4.20
813 962 0.727970 TGTTGCGCTAAACGTGTTGT 59.272 45.000 9.73 0.00 46.11 3.32
858 1007 0.108186 TGCTCGCATGGTCACCTTAG 60.108 55.000 0.00 0.00 0.00 2.18
880 1029 2.674954 TGCACATTTTGATTCGCCTTG 58.325 42.857 0.00 0.00 0.00 3.61
881 1030 1.994779 GCACATTTTGATTCGCCTTGG 59.005 47.619 0.00 0.00 0.00 3.61
882 1031 2.352617 GCACATTTTGATTCGCCTTGGA 60.353 45.455 0.00 0.00 0.00 3.53
884 1033 4.497300 CACATTTTGATTCGCCTTGGAAT 58.503 39.130 0.00 0.00 39.27 3.01
896 1045 3.941483 CGCCTTGGAATGATTCAACTAGT 59.059 43.478 7.56 0.00 0.00 2.57
915 1068 4.478206 AGTTCGTCTGAATCATCACCAT 57.522 40.909 0.00 0.00 36.29 3.55
916 1069 4.186926 AGTTCGTCTGAATCATCACCATG 58.813 43.478 0.00 0.00 36.29 3.66
918 1071 2.501316 TCGTCTGAATCATCACCATGGT 59.499 45.455 13.00 13.00 0.00 3.55
920 1073 3.804325 CGTCTGAATCATCACCATGGTAC 59.196 47.826 19.28 7.06 0.00 3.34
945 1098 2.981859 TAGAAATGACCCGCTTCTCC 57.018 50.000 0.00 0.00 31.91 3.71
1134 1307 1.786579 GCGTTGTTGTTTCTTCATGCC 59.213 47.619 0.00 0.00 0.00 4.40
1185 1358 0.382515 CTTCCTCTCCGGTCATCGTC 59.617 60.000 0.00 0.00 37.11 4.20
1195 1368 0.179156 GGTCATCGTCTTAACCGCGA 60.179 55.000 8.23 0.00 39.02 5.87
1221 1394 4.537135 TCTCGGAGCACTTTTGAGTTAT 57.463 40.909 0.00 0.00 0.00 1.89
1273 1446 1.277557 AGACACTGGAGGAGCATGAAC 59.722 52.381 0.00 0.00 0.00 3.18
1300 1473 7.552050 TTGTCCCTTAAATCCAACATTCATT 57.448 32.000 0.00 0.00 0.00 2.57
1305 1478 9.320295 TCCCTTAAATCCAACATTCATTTTAGT 57.680 29.630 0.00 0.00 0.00 2.24
1485 3406 2.608546 CTCTGATGCTGCTGTTCTTAGC 59.391 50.000 0.00 0.00 43.95 3.09
1507 3428 3.931768 GCATATGCTGAGGAGGAGG 57.068 57.895 20.64 0.00 38.21 4.30
1619 3540 4.454678 TGTAACCATCCTGAGATCAATGC 58.545 43.478 0.00 0.00 0.00 3.56
1652 3573 0.238553 GAAGAGCGTGCCAAGGAAAC 59.761 55.000 0.00 0.00 0.00 2.78
1889 3810 3.356290 ACCTGCACCCACTGATAAATTC 58.644 45.455 0.00 0.00 0.00 2.17
2033 3957 1.355971 GAACGGCAGCAAGATAACGA 58.644 50.000 0.00 0.00 0.00 3.85
2154 4078 4.707105 TCAAGTTTGAGCTTGACATGAGA 58.293 39.130 0.00 0.00 46.74 3.27
2349 4273 1.060122 CGACGGCGAAACCTATTTGAC 59.940 52.381 16.62 0.00 40.82 3.18
2427 4351 2.126110 TCGCGCTTTCGATCAGCA 60.126 55.556 15.37 0.00 37.07 4.41
2446 4370 2.033492 GCACAAGCACAAAACATGAAGC 60.033 45.455 0.00 0.00 41.58 3.86
2457 4381 2.191128 ACATGAAGCACAGGAACTCC 57.809 50.000 0.00 0.00 34.60 3.85
2458 4382 1.271597 ACATGAAGCACAGGAACTCCC 60.272 52.381 0.00 0.00 34.60 4.30
2480 4404 4.152402 CCGTGGACAAAATCACTCTACTTG 59.848 45.833 0.00 0.00 0.00 3.16
2501 4437 2.100584 GCAATGGTGAAATGGGCGATAA 59.899 45.455 0.00 0.00 0.00 1.75
2526 4462 1.875813 GGACGACGATGCTGAGCAG 60.876 63.158 14.36 2.22 43.65 4.24
2540 4476 0.034670 GAGCAGGAAGGGAGCAATGT 60.035 55.000 0.00 0.00 0.00 2.71
2541 4477 0.034670 AGCAGGAAGGGAGCAATGTC 60.035 55.000 0.00 0.00 0.00 3.06
2544 4480 1.815003 CAGGAAGGGAGCAATGTCAAC 59.185 52.381 0.00 0.00 0.00 3.18
2545 4481 1.707427 AGGAAGGGAGCAATGTCAACT 59.293 47.619 0.00 0.00 0.00 3.16
2595 4531 9.601217 TTAGGTGAAGAGATGAAAATACTAAGC 57.399 33.333 0.00 0.00 0.00 3.09
2628 4564 4.101448 GTGGGCGTGCTGGGAGAT 62.101 66.667 0.00 0.00 0.00 2.75
2656 4592 3.493129 TCATGAAACAGACGAAGGAAACG 59.507 43.478 0.00 0.00 0.00 3.60
2669 4605 3.914426 AGGAAACGGAGATGCTAATGT 57.086 42.857 0.00 0.00 0.00 2.71
2719 4655 1.805943 CACATGATTCTGAACCGCACA 59.194 47.619 0.00 0.00 0.00 4.57
2856 4792 1.408453 AAGCTATACCGAGTGCCCCC 61.408 60.000 0.00 0.00 0.00 5.40
2858 4794 1.817911 GCTATACCGAGTGCCCCCTC 61.818 65.000 0.00 0.00 0.00 4.30
2945 4881 0.322975 ACAGCCGATGAAGAAGCACT 59.677 50.000 0.00 0.00 0.00 4.40
3135 5071 2.676839 CGAGCTTCCTGTCGTAGAAGTA 59.323 50.000 0.00 0.00 41.29 2.24
3137 5073 2.424246 AGCTTCCTGTCGTAGAAGTAGC 59.576 50.000 0.00 0.00 41.29 3.58
3399 5335 1.606668 GGTTTGCGTGACAGGATTCAA 59.393 47.619 0.00 0.00 0.00 2.69
3514 5539 7.176690 TCTCAAGGGTTTCAGAAATATTTGGAC 59.823 37.037 5.17 0.00 0.00 4.02
3653 5693 5.455056 TTTTGCGGGTGTAAACATTGTAT 57.545 34.783 0.00 0.00 28.93 2.29
3673 5716 2.543777 TACTCAAGTCACTTGGCCAC 57.456 50.000 17.71 0.00 41.33 5.01
3765 5813 4.144391 CGTCGCGAACTTAGCTAAACTATC 59.856 45.833 12.06 3.04 0.00 2.08
3812 5860 8.006027 GGTTAACACGAGTAATACAAGTTTCAC 58.994 37.037 8.10 0.00 0.00 3.18
3817 5865 5.632347 ACGAGTAATACAAGTTTCACGAAGG 59.368 40.000 0.00 0.00 0.00 3.46
3818 5866 5.860182 CGAGTAATACAAGTTTCACGAAGGA 59.140 40.000 0.00 0.00 0.00 3.36
3819 5867 6.530534 CGAGTAATACAAGTTTCACGAAGGAT 59.469 38.462 0.00 0.00 0.00 3.24
3820 5868 7.699391 CGAGTAATACAAGTTTCACGAAGGATA 59.301 37.037 0.00 0.00 0.00 2.59
3821 5869 9.362539 GAGTAATACAAGTTTCACGAAGGATAA 57.637 33.333 0.00 0.00 0.00 1.75
3822 5870 9.148104 AGTAATACAAGTTTCACGAAGGATAAC 57.852 33.333 0.00 0.00 0.00 1.89
3823 5871 6.980051 ATACAAGTTTCACGAAGGATAACC 57.020 37.500 0.00 0.00 0.00 2.85
3838 5886 6.651975 AGGATAACCTTATTCTGAGTACGG 57.348 41.667 1.83 1.83 45.36 4.02
3839 5887 6.134754 AGGATAACCTTATTCTGAGTACGGT 58.865 40.000 3.01 3.01 45.36 4.83
3840 5888 6.610425 AGGATAACCTTATTCTGAGTACGGTT 59.390 38.462 19.83 19.83 45.36 4.44
3841 5889 7.781693 AGGATAACCTTATTCTGAGTACGGTTA 59.218 37.037 21.97 21.97 45.36 2.85
3842 5890 8.416329 GGATAACCTTATTCTGAGTACGGTTAA 58.584 37.037 22.91 12.55 38.56 2.01
3843 5891 9.242477 GATAACCTTATTCTGAGTACGGTTAAC 57.758 37.037 22.91 18.80 38.56 2.01
3844 5892 6.594788 ACCTTATTCTGAGTACGGTTAACA 57.405 37.500 8.10 0.00 0.00 2.41
3845 5893 6.393171 ACCTTATTCTGAGTACGGTTAACAC 58.607 40.000 8.10 0.00 0.00 3.32
3846 5894 5.514204 CCTTATTCTGAGTACGGTTAACACG 59.486 44.000 8.10 10.97 37.36 4.49
3847 5895 4.771590 ATTCTGAGTACGGTTAACACGA 57.228 40.909 19.05 4.74 34.93 4.35
3848 5896 3.818961 TCTGAGTACGGTTAACACGAG 57.181 47.619 19.05 8.74 34.93 4.18
3849 5897 3.141398 TCTGAGTACGGTTAACACGAGT 58.859 45.455 19.05 10.63 34.93 4.18
3850 5898 4.314961 TCTGAGTACGGTTAACACGAGTA 58.685 43.478 19.05 9.82 34.93 2.59
3851 5899 4.754618 TCTGAGTACGGTTAACACGAGTAA 59.245 41.667 19.05 3.73 34.93 2.24
3852 5900 5.412594 TCTGAGTACGGTTAACACGAGTAAT 59.587 40.000 19.05 11.23 34.93 1.89
3853 5901 6.593770 TCTGAGTACGGTTAACACGAGTAATA 59.406 38.462 19.05 2.88 34.93 0.98
3854 5902 6.542852 TGAGTACGGTTAACACGAGTAATAC 58.457 40.000 19.05 11.99 34.93 1.89
3855 5903 6.148645 TGAGTACGGTTAACACGAGTAATACA 59.851 38.462 19.05 10.00 34.93 2.29
3856 5904 6.908825 AGTACGGTTAACACGAGTAATACAA 58.091 36.000 19.05 0.00 34.93 2.41
3857 5905 7.023575 AGTACGGTTAACACGAGTAATACAAG 58.976 38.462 19.05 0.00 34.93 3.16
3858 5906 5.772521 ACGGTTAACACGAGTAATACAAGT 58.227 37.500 19.05 0.00 34.93 3.16
3859 5907 6.215845 ACGGTTAACACGAGTAATACAAGTT 58.784 36.000 19.05 0.00 34.93 2.66
3860 5908 6.701400 ACGGTTAACACGAGTAATACAAGTTT 59.299 34.615 19.05 0.00 34.93 2.66
3861 5909 7.096065 ACGGTTAACACGAGTAATACAAGTTTC 60.096 37.037 19.05 0.00 34.93 2.78
3862 5910 7.096106 CGGTTAACACGAGTAATACAAGTTTCA 60.096 37.037 8.10 0.00 0.00 2.69
3863 5911 8.006027 GGTTAACACGAGTAATACAAGTTTCAC 58.994 37.037 8.10 0.00 0.00 3.18
3864 5912 5.817616 ACACGAGTAATACAAGTTTCACG 57.182 39.130 0.00 0.00 0.00 4.35
3865 5913 5.522456 ACACGAGTAATACAAGTTTCACGA 58.478 37.500 0.00 0.00 0.00 4.35
3866 5914 5.978919 ACACGAGTAATACAAGTTTCACGAA 59.021 36.000 0.00 0.00 0.00 3.85
3867 5915 6.143438 ACACGAGTAATACAAGTTTCACGAAG 59.857 38.462 0.00 0.00 0.00 3.79
3868 5916 6.361481 CACGAGTAATACAAGTTTCACGAAGA 59.639 38.462 0.00 0.00 0.00 2.87
3869 5917 6.361748 ACGAGTAATACAAGTTTCACGAAGAC 59.638 38.462 0.00 0.00 0.00 3.01
3870 5918 6.361481 CGAGTAATACAAGTTTCACGAAGACA 59.639 38.462 0.00 0.00 0.00 3.41
3871 5919 7.404139 AGTAATACAAGTTTCACGAAGACAC 57.596 36.000 0.00 0.00 0.00 3.67
3872 5920 6.982141 AGTAATACAAGTTTCACGAAGACACA 59.018 34.615 0.00 0.00 29.15 3.72
3873 5921 6.861065 AATACAAGTTTCACGAAGACACAT 57.139 33.333 0.00 0.00 29.15 3.21
3874 5922 7.956420 AATACAAGTTTCACGAAGACACATA 57.044 32.000 0.00 0.00 29.15 2.29
3875 5923 7.956420 ATACAAGTTTCACGAAGACACATAA 57.044 32.000 0.00 0.00 29.15 1.90
3876 5924 6.861065 ACAAGTTTCACGAAGACACATAAT 57.139 33.333 0.00 0.00 29.15 1.28
3877 5925 7.956420 ACAAGTTTCACGAAGACACATAATA 57.044 32.000 0.00 0.00 29.15 0.98
3878 5926 7.793902 ACAAGTTTCACGAAGACACATAATAC 58.206 34.615 0.00 0.00 29.15 1.89
3879 5927 7.439955 ACAAGTTTCACGAAGACACATAATACA 59.560 33.333 0.00 0.00 29.15 2.29
3880 5928 7.956420 AGTTTCACGAAGACACATAATACAA 57.044 32.000 0.00 0.00 29.15 2.41
3881 5929 8.018677 AGTTTCACGAAGACACATAATACAAG 57.981 34.615 0.00 0.00 29.15 3.16
3882 5930 7.656137 AGTTTCACGAAGACACATAATACAAGT 59.344 33.333 0.00 0.00 29.15 3.16
3883 5931 7.956420 TTCACGAAGACACATAATACAAGTT 57.044 32.000 0.00 0.00 0.00 2.66
3884 5932 7.956420 TCACGAAGACACATAATACAAGTTT 57.044 32.000 0.00 0.00 0.00 2.66
3885 5933 8.014322 TCACGAAGACACATAATACAAGTTTC 57.986 34.615 0.00 0.00 0.00 2.78
3886 5934 7.654116 TCACGAAGACACATAATACAAGTTTCA 59.346 33.333 0.00 0.00 0.00 2.69
3887 5935 7.740346 CACGAAGACACATAATACAAGTTTCAC 59.260 37.037 0.00 0.00 0.00 3.18
3888 5936 6.948228 CGAAGACACATAATACAAGTTTCACG 59.052 38.462 0.00 0.00 0.00 4.35
3889 5937 7.148869 CGAAGACACATAATACAAGTTTCACGA 60.149 37.037 0.00 0.00 0.00 4.35
3890 5938 7.956420 AGACACATAATACAAGTTTCACGAA 57.044 32.000 0.00 0.00 0.00 3.85
3891 5939 8.018677 AGACACATAATACAAGTTTCACGAAG 57.981 34.615 0.00 0.00 0.00 3.79
3892 5940 7.117812 AGACACATAATACAAGTTTCACGAAGG 59.882 37.037 0.00 0.00 0.00 3.46
3893 5941 6.708949 ACACATAATACAAGTTTCACGAAGGT 59.291 34.615 0.00 0.00 0.00 3.50
3894 5942 7.227910 ACACATAATACAAGTTTCACGAAGGTT 59.772 33.333 0.00 0.00 0.00 3.50
3895 5943 8.714179 CACATAATACAAGTTTCACGAAGGTTA 58.286 33.333 0.00 0.00 0.00 2.85
3896 5944 9.275398 ACATAATACAAGTTTCACGAAGGTTAA 57.725 29.630 0.00 0.00 0.00 2.01
3897 5945 9.537848 CATAATACAAGTTTCACGAAGGTTAAC 57.462 33.333 0.00 0.00 0.00 2.01
3898 5946 4.888038 ACAAGTTTCACGAAGGTTAACC 57.112 40.909 17.41 17.41 0.00 2.85
3913 5961 6.218108 AGGTTAACCTTATTCTGAGTACGG 57.782 41.667 21.96 1.83 46.09 4.02
3914 5962 4.807834 GGTTAACCTTATTCTGAGTACGGC 59.192 45.833 17.83 0.00 0.00 5.68
3915 5963 5.394993 GGTTAACCTTATTCTGAGTACGGCT 60.395 44.000 17.83 0.00 0.00 5.52
3916 5964 6.183360 GGTTAACCTTATTCTGAGTACGGCTA 60.183 42.308 17.83 0.00 0.00 3.93
3917 5965 5.927281 AACCTTATTCTGAGTACGGCTAA 57.073 39.130 3.11 0.00 0.00 3.09
3918 5966 5.259832 ACCTTATTCTGAGTACGGCTAAC 57.740 43.478 3.11 0.00 0.00 2.34
3919 5967 4.708421 ACCTTATTCTGAGTACGGCTAACA 59.292 41.667 3.11 0.00 0.00 2.41
3920 5968 5.041940 CCTTATTCTGAGTACGGCTAACAC 58.958 45.833 0.00 0.00 0.00 3.32
3921 5969 2.624316 TTCTGAGTACGGCTAACACG 57.376 50.000 0.00 0.00 37.36 4.49
3922 5970 1.812235 TCTGAGTACGGCTAACACGA 58.188 50.000 0.00 0.00 34.93 4.35
3923 5971 1.736126 TCTGAGTACGGCTAACACGAG 59.264 52.381 0.00 0.00 34.93 4.18
3924 5972 1.467734 CTGAGTACGGCTAACACGAGT 59.532 52.381 0.00 0.00 34.93 4.18
3925 5973 2.674852 CTGAGTACGGCTAACACGAGTA 59.325 50.000 0.00 0.00 34.93 2.59
3926 5974 3.073678 TGAGTACGGCTAACACGAGTAA 58.926 45.455 0.00 0.00 34.93 2.24
3927 5975 3.691118 TGAGTACGGCTAACACGAGTAAT 59.309 43.478 0.00 0.00 34.93 1.89
3928 5976 4.025015 AGTACGGCTAACACGAGTAATG 57.975 45.455 0.00 0.00 34.93 1.90
3929 5977 1.636988 ACGGCTAACACGAGTAATGC 58.363 50.000 0.00 0.00 34.93 3.56
3930 5978 1.067425 ACGGCTAACACGAGTAATGCA 60.067 47.619 0.00 0.00 34.93 3.96
3931 5979 1.996898 CGGCTAACACGAGTAATGCAA 59.003 47.619 0.00 0.00 0.00 4.08
3932 5980 2.029244 CGGCTAACACGAGTAATGCAAG 59.971 50.000 0.00 0.00 0.00 4.01
3933 5981 3.000727 GGCTAACACGAGTAATGCAAGT 58.999 45.455 0.00 0.00 0.00 3.16
3934 5982 3.435671 GGCTAACACGAGTAATGCAAGTT 59.564 43.478 0.00 0.00 0.00 2.66
3935 5983 4.083484 GGCTAACACGAGTAATGCAAGTTT 60.083 41.667 0.00 0.00 0.00 2.66
3939 5987 3.059868 ACACGAGTAATGCAAGTTTCACG 60.060 43.478 0.00 0.00 0.00 4.35
4093 6141 3.347077 AAAGAGAGACCTTCCATGCAG 57.653 47.619 0.00 0.00 0.00 4.41
4094 6142 1.202330 AGAGAGACCTTCCATGCAGG 58.798 55.000 7.48 7.48 37.45 4.85
4117 6165 1.068954 CAGAGTTTCGCTTCCAAAGGC 60.069 52.381 0.00 0.00 0.00 4.35
4119 6167 1.197949 GAGTTTCGCTTCCAAAGGCTC 59.802 52.381 0.00 0.00 0.00 4.70
4155 6203 8.664211 AAAAACTCTCTACAAGACGAGAAAAT 57.336 30.769 0.00 0.00 35.99 1.82
4156 6204 9.760077 AAAAACTCTCTACAAGACGAGAAAATA 57.240 29.630 0.00 0.00 35.99 1.40
4157 6205 9.760077 AAAACTCTCTACAAGACGAGAAAATAA 57.240 29.630 0.00 0.00 35.99 1.40
4158 6206 9.760077 AAACTCTCTACAAGACGAGAAAATAAA 57.240 29.630 0.00 0.00 35.99 1.40
4159 6207 8.745464 ACTCTCTACAAGACGAGAAAATAAAC 57.255 34.615 0.00 0.00 35.99 2.01
4160 6208 8.358148 ACTCTCTACAAGACGAGAAAATAAACA 58.642 33.333 0.00 0.00 35.99 2.83
4161 6209 8.516811 TCTCTACAAGACGAGAAAATAAACAC 57.483 34.615 0.00 0.00 33.62 3.32
4162 6210 8.139350 TCTCTACAAGACGAGAAAATAAACACA 58.861 33.333 0.00 0.00 33.62 3.72
4163 6211 8.068893 TCTACAAGACGAGAAAATAAACACAC 57.931 34.615 0.00 0.00 0.00 3.82
4164 6212 6.056428 ACAAGACGAGAAAATAAACACACC 57.944 37.500 0.00 0.00 0.00 4.16
4165 6213 5.008316 ACAAGACGAGAAAATAAACACACCC 59.992 40.000 0.00 0.00 0.00 4.61
4166 6214 4.070009 AGACGAGAAAATAAACACACCCC 58.930 43.478 0.00 0.00 0.00 4.95
4167 6215 4.070009 GACGAGAAAATAAACACACCCCT 58.930 43.478 0.00 0.00 0.00 4.79
4168 6216 3.818773 ACGAGAAAATAAACACACCCCTG 59.181 43.478 0.00 0.00 0.00 4.45
4169 6217 3.818773 CGAGAAAATAAACACACCCCTGT 59.181 43.478 0.00 0.00 0.00 4.00
4170 6218 4.083484 CGAGAAAATAAACACACCCCTGTC 60.083 45.833 0.00 0.00 0.00 3.51
4171 6219 3.818773 AGAAAATAAACACACCCCTGTCG 59.181 43.478 0.00 0.00 0.00 4.35
4172 6220 2.194201 AATAAACACACCCCTGTCGG 57.806 50.000 0.00 0.00 0.00 4.79
4173 6221 0.322187 ATAAACACACCCCTGTCGGC 60.322 55.000 0.00 0.00 0.00 5.54
4174 6222 2.718747 TAAACACACCCCTGTCGGCG 62.719 60.000 0.00 0.00 0.00 6.46
4176 6224 4.619227 CACACCCCTGTCGGCGTT 62.619 66.667 6.85 0.00 0.00 4.84
4177 6225 4.309950 ACACCCCTGTCGGCGTTC 62.310 66.667 6.85 2.07 0.00 3.95
4178 6226 4.003788 CACCCCTGTCGGCGTTCT 62.004 66.667 6.85 0.00 0.00 3.01
4179 6227 4.003788 ACCCCTGTCGGCGTTCTG 62.004 66.667 6.85 5.83 0.00 3.02
4180 6228 4.760047 CCCCTGTCGGCGTTCTGG 62.760 72.222 6.85 14.10 0.00 3.86
4182 6230 4.680237 CCTGTCGGCGTTCTGGCA 62.680 66.667 6.85 0.00 45.16 4.92
4183 6231 2.664851 CTGTCGGCGTTCTGGCAA 60.665 61.111 6.85 0.00 45.16 4.52
4184 6232 2.954753 CTGTCGGCGTTCTGGCAAC 61.955 63.158 6.85 0.00 45.16 4.17
4185 6233 3.723348 GTCGGCGTTCTGGCAACC 61.723 66.667 6.85 0.00 45.16 3.77
4190 6238 4.636435 CGTTCTGGCAACCGGGGT 62.636 66.667 6.32 0.00 0.00 4.95
4191 6239 2.751688 GTTCTGGCAACCGGGGTA 59.248 61.111 6.32 0.00 0.00 3.69
4192 6240 1.301954 GTTCTGGCAACCGGGGTAT 59.698 57.895 6.32 0.00 0.00 2.73
4193 6241 0.746923 GTTCTGGCAACCGGGGTATC 60.747 60.000 6.32 0.00 0.00 2.24
4194 6242 1.917336 TTCTGGCAACCGGGGTATCC 61.917 60.000 6.32 0.00 0.00 2.59
4195 6243 2.611172 TGGCAACCGGGGTATCCA 60.611 61.111 6.32 2.45 34.36 3.41
4196 6244 1.994885 CTGGCAACCGGGGTATCCAT 61.995 60.000 6.32 0.00 32.18 3.41
4197 6245 0.694783 TGGCAACCGGGGTATCCATA 60.695 55.000 6.32 0.00 34.36 2.74
4198 6246 0.250597 GGCAACCGGGGTATCCATAC 60.251 60.000 6.32 0.00 34.36 2.39
4199 6247 0.763035 GCAACCGGGGTATCCATACT 59.237 55.000 6.32 0.00 33.81 2.12
4200 6248 1.142262 GCAACCGGGGTATCCATACTT 59.858 52.381 6.32 0.00 33.81 2.24
4201 6249 2.846193 CAACCGGGGTATCCATACTTG 58.154 52.381 6.32 0.00 33.81 3.16
4202 6250 0.763035 ACCGGGGTATCCATACTTGC 59.237 55.000 6.32 0.00 33.81 4.01
4203 6251 0.036306 CCGGGGTATCCATACTTGCC 59.964 60.000 0.00 0.00 33.81 4.52
4204 6252 1.056660 CGGGGTATCCATACTTGCCT 58.943 55.000 0.00 0.00 33.81 4.75
4205 6253 1.270839 CGGGGTATCCATACTTGCCTG 60.271 57.143 0.00 0.00 33.81 4.85
4206 6254 2.054799 GGGGTATCCATACTTGCCTGA 58.945 52.381 0.00 0.00 33.81 3.86
4207 6255 2.224548 GGGGTATCCATACTTGCCTGAC 60.225 54.545 0.00 0.00 33.81 3.51
4208 6256 2.706190 GGGTATCCATACTTGCCTGACT 59.294 50.000 0.00 0.00 33.81 3.41
4209 6257 3.495100 GGGTATCCATACTTGCCTGACTG 60.495 52.174 0.00 0.00 33.81 3.51
4210 6258 2.338577 ATCCATACTTGCCTGACTGC 57.661 50.000 0.00 0.00 0.00 4.40
4211 6259 0.108186 TCCATACTTGCCTGACTGCG 60.108 55.000 0.00 0.00 0.00 5.18
4212 6260 1.091771 CCATACTTGCCTGACTGCGG 61.092 60.000 0.00 0.00 0.00 5.69
4243 6291 3.151710 CCCATCGACGGCCTGGTA 61.152 66.667 0.00 0.00 0.00 3.25
4244 6292 2.106332 CCATCGACGGCCTGGTAC 59.894 66.667 0.00 0.00 0.00 3.34
4245 6293 2.278596 CATCGACGGCCTGGTACG 60.279 66.667 0.00 10.58 0.00 3.67
4246 6294 3.524606 ATCGACGGCCTGGTACGG 61.525 66.667 15.29 0.00 0.00 4.02
4253 6301 3.480133 GCCTGGTACGGCCCATCT 61.480 66.667 0.00 0.00 40.94 2.90
4254 6302 3.043999 GCCTGGTACGGCCCATCTT 62.044 63.158 0.00 0.00 40.94 2.40
4255 6303 1.146263 CCTGGTACGGCCCATCTTC 59.854 63.158 0.00 0.00 36.04 2.87
4256 6304 1.622607 CCTGGTACGGCCCATCTTCA 61.623 60.000 0.00 0.00 36.04 3.02
4257 6305 0.251916 CTGGTACGGCCCATCTTCAA 59.748 55.000 0.00 0.00 36.04 2.69
4258 6306 0.035820 TGGTACGGCCCATCTTCAAC 60.036 55.000 0.00 0.00 36.04 3.18
4259 6307 0.035820 GGTACGGCCCATCTTCAACA 60.036 55.000 0.00 0.00 0.00 3.33
4260 6308 1.084289 GTACGGCCCATCTTCAACAC 58.916 55.000 0.00 0.00 0.00 3.32
4261 6309 0.035820 TACGGCCCATCTTCAACACC 60.036 55.000 0.00 0.00 0.00 4.16
4262 6310 1.303236 CGGCCCATCTTCAACACCA 60.303 57.895 0.00 0.00 0.00 4.17
4263 6311 0.893270 CGGCCCATCTTCAACACCAA 60.893 55.000 0.00 0.00 0.00 3.67
4264 6312 0.603065 GGCCCATCTTCAACACCAAC 59.397 55.000 0.00 0.00 0.00 3.77
4265 6313 1.327303 GCCCATCTTCAACACCAACA 58.673 50.000 0.00 0.00 0.00 3.33
4266 6314 1.686052 GCCCATCTTCAACACCAACAA 59.314 47.619 0.00 0.00 0.00 2.83
4267 6315 2.545742 GCCCATCTTCAACACCAACAAC 60.546 50.000 0.00 0.00 0.00 3.32
4268 6316 2.692557 CCCATCTTCAACACCAACAACA 59.307 45.455 0.00 0.00 0.00 3.33
4269 6317 3.490761 CCCATCTTCAACACCAACAACAC 60.491 47.826 0.00 0.00 0.00 3.32
4270 6318 3.130164 CCATCTTCAACACCAACAACACA 59.870 43.478 0.00 0.00 0.00 3.72
4271 6319 4.381398 CCATCTTCAACACCAACAACACAA 60.381 41.667 0.00 0.00 0.00 3.33
4272 6320 4.433186 TCTTCAACACCAACAACACAAG 57.567 40.909 0.00 0.00 0.00 3.16
4273 6321 4.075682 TCTTCAACACCAACAACACAAGA 58.924 39.130 0.00 0.00 0.00 3.02
4274 6322 3.840890 TCAACACCAACAACACAAGAC 57.159 42.857 0.00 0.00 0.00 3.01
4275 6323 2.490115 TCAACACCAACAACACAAGACC 59.510 45.455 0.00 0.00 0.00 3.85
4276 6324 1.470051 ACACCAACAACACAAGACCC 58.530 50.000 0.00 0.00 0.00 4.46
4277 6325 1.005450 ACACCAACAACACAAGACCCT 59.995 47.619 0.00 0.00 0.00 4.34
4278 6326 1.676006 CACCAACAACACAAGACCCTC 59.324 52.381 0.00 0.00 0.00 4.30
4279 6327 0.944386 CCAACAACACAAGACCCTCG 59.056 55.000 0.00 0.00 0.00 4.63
4280 6328 0.307760 CAACAACACAAGACCCTCGC 59.692 55.000 0.00 0.00 0.00 5.03
4281 6329 1.157870 AACAACACAAGACCCTCGCG 61.158 55.000 0.00 0.00 0.00 5.87
4282 6330 1.300620 CAACACAAGACCCTCGCGA 60.301 57.895 9.26 9.26 0.00 5.87
4283 6331 1.006102 AACACAAGACCCTCGCGAG 60.006 57.895 29.06 29.06 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 106 5.567430 TGCGTAGGGTACTACTATGATGAT 58.433 41.667 16.44 0.00 45.92 2.45
101 107 4.976864 TGCGTAGGGTACTACTATGATGA 58.023 43.478 16.44 2.82 45.92 2.92
102 108 5.393135 CCATGCGTAGGGTACTACTATGATG 60.393 48.000 16.44 15.09 45.92 3.07
103 109 4.705507 CCATGCGTAGGGTACTACTATGAT 59.294 45.833 16.44 8.06 45.92 2.45
189 201 5.798125 TCTGGATTCTACTAATGCCTGAG 57.202 43.478 0.00 0.00 0.00 3.35
194 206 7.220030 TCTGGATTTCTGGATTCTACTAATGC 58.780 38.462 0.00 0.00 0.00 3.56
197 209 7.690301 GCCATCTGGATTTCTGGATTCTACTAA 60.690 40.741 0.00 0.00 37.39 2.24
238 250 8.100164 ACATTGTTTTCCCAAGAAGAAGAAAAA 58.900 29.630 0.00 0.00 39.26 1.94
254 266 8.455682 TCGGAAGACCATTATTACATTGTTTTC 58.544 33.333 0.00 0.00 35.59 2.29
259 271 5.049405 GGCTCGGAAGACCATTATTACATTG 60.049 44.000 0.00 0.00 35.39 2.82
264 276 4.764050 TTGGCTCGGAAGACCATTATTA 57.236 40.909 0.00 0.00 39.71 0.98
270 282 0.911769 ATCATTGGCTCGGAAGACCA 59.088 50.000 0.00 0.00 38.77 4.02
271 283 1.139853 AGATCATTGGCTCGGAAGACC 59.860 52.381 0.00 0.00 35.39 3.85
299 311 6.238484 GCAGATTATGGTTGCGTCTTTATCTT 60.238 38.462 0.00 0.00 0.00 2.40
383 395 2.126307 CGTGCTCACCTCACCTCG 60.126 66.667 0.00 0.00 0.00 4.63
470 491 1.861429 TGGAGACAGGAGACAGGGT 59.139 57.895 0.00 0.00 35.01 4.34
556 585 0.161024 CAAGAACGCGAAAGTCCGAC 59.839 55.000 15.93 0.00 0.00 4.79
598 628 1.727511 GCAAGAAGCACACACCTGCA 61.728 55.000 0.00 0.00 44.79 4.41
620 653 3.722147 AGAACATATTAGCACCAGAGCG 58.278 45.455 0.00 0.00 40.15 5.03
627 660 3.287222 TGGCCCAAGAACATATTAGCAC 58.713 45.455 0.00 0.00 0.00 4.40
707 744 5.240713 AGAAAAGCAAATGGAATCTAGCG 57.759 39.130 0.00 0.00 0.00 4.26
742 807 3.623060 GCGCCTGATATCAGTCAGAAAAA 59.377 43.478 27.03 0.00 46.77 1.94
747 812 2.522836 AAGCGCCTGATATCAGTCAG 57.477 50.000 27.03 19.07 44.12 3.51
748 813 5.243954 AGTTATAAGCGCCTGATATCAGTCA 59.756 40.000 27.03 3.23 42.27 3.41
750 815 5.243954 TCAGTTATAAGCGCCTGATATCAGT 59.756 40.000 27.03 13.56 42.27 3.41
777 842 6.039616 GCGCAACAAATTCATCCCTATTAAA 58.960 36.000 0.30 0.00 0.00 1.52
785 850 3.300590 CGTTTAGCGCAACAAATTCATCC 59.699 43.478 11.47 0.00 0.00 3.51
787 852 3.668191 CACGTTTAGCGCAACAAATTCAT 59.332 39.130 11.47 0.00 46.11 2.57
788 853 3.039405 CACGTTTAGCGCAACAAATTCA 58.961 40.909 11.47 0.00 46.11 2.57
789 854 3.040099 ACACGTTTAGCGCAACAAATTC 58.960 40.909 11.47 0.00 46.11 2.17
790 855 3.073144 ACACGTTTAGCGCAACAAATT 57.927 38.095 11.47 0.00 46.11 1.82
791 856 2.766970 ACACGTTTAGCGCAACAAAT 57.233 40.000 11.47 0.00 46.11 2.32
858 1007 2.676076 AGGCGAATCAAAATGTGCAAC 58.324 42.857 0.00 0.00 37.35 4.17
880 1029 6.100004 TCAGACGAACTAGTTGAATCATTCC 58.900 40.000 14.14 0.00 0.00 3.01
881 1030 7.582435 TTCAGACGAACTAGTTGAATCATTC 57.418 36.000 14.14 0.00 0.00 2.67
882 1031 8.190888 GATTCAGACGAACTAGTTGAATCATT 57.809 34.615 27.32 9.02 46.68 2.57
896 1045 3.055167 ACCATGGTGATGATTCAGACGAA 60.055 43.478 18.99 0.00 35.05 3.85
915 1068 5.682990 GCGGGTCATTTCTATTGTAGTACCA 60.683 44.000 0.00 0.00 0.00 3.25
916 1069 4.748600 GCGGGTCATTTCTATTGTAGTACC 59.251 45.833 0.00 0.00 0.00 3.34
918 1071 5.864418 AGCGGGTCATTTCTATTGTAGTA 57.136 39.130 0.00 0.00 0.00 1.82
920 1073 5.360591 AGAAGCGGGTCATTTCTATTGTAG 58.639 41.667 0.00 0.00 29.82 2.74
1134 1307 1.937108 GCGAACAGAGAAGGACACAGG 60.937 57.143 0.00 0.00 0.00 4.00
1195 1368 3.999663 CTCAAAAGTGCTCCGAGAAGAAT 59.000 43.478 0.00 0.00 0.00 2.40
1221 1394 2.595463 GGCACAGCAGCTTCACCA 60.595 61.111 0.00 0.00 34.17 4.17
1273 1446 6.014669 TGAATGTTGGATTTAAGGGACAAAGG 60.015 38.462 0.00 0.00 0.00 3.11
1300 1473 6.049149 CCTCTTTGTCTGAACAGTCACTAAA 58.951 40.000 1.76 0.00 36.57 1.85
1305 1478 4.081142 TCAACCTCTTTGTCTGAACAGTCA 60.081 41.667 1.73 0.00 36.57 3.41
1506 3427 3.565902 GCAAACTATCATAGGGAGTTGCC 59.434 47.826 11.04 0.00 33.75 4.52
1507 3428 4.199310 TGCAAACTATCATAGGGAGTTGC 58.801 43.478 13.61 13.61 33.75 4.17
1619 3540 1.089920 CTCTTCGCATTCCAAGGTGG 58.910 55.000 0.00 0.00 39.43 4.61
1889 3810 0.322008 GGAAAGCTGACCAGTCCCTG 60.322 60.000 4.79 0.00 0.00 4.45
1955 3876 1.944177 CTCCTCCTCCTCAAGGTCAA 58.056 55.000 0.00 0.00 46.32 3.18
2033 3957 7.595819 TGAACAACATCCTTCCAATTAACTT 57.404 32.000 0.00 0.00 0.00 2.66
2154 4078 1.203994 GCAGCTTGCAGGTCAATTGAT 59.796 47.619 12.12 0.00 44.26 2.57
2349 4273 1.521681 GGCTCGGTCGAATGGAAGG 60.522 63.158 0.00 0.00 0.00 3.46
2427 4351 3.189285 GTGCTTCATGTTTTGTGCTTGT 58.811 40.909 0.00 0.00 0.00 3.16
2457 4381 3.926616 AGTAGAGTGATTTTGTCCACGG 58.073 45.455 0.00 0.00 38.26 4.94
2458 4382 4.377431 GCAAGTAGAGTGATTTTGTCCACG 60.377 45.833 0.00 0.00 38.26 4.94
2480 4404 0.461135 ATCGCCCATTTCACCATTGC 59.539 50.000 0.00 0.00 0.00 3.56
2526 4462 2.206576 AGTTGACATTGCTCCCTTCC 57.793 50.000 0.00 0.00 0.00 3.46
2540 4476 3.745799 TCCAGCGAACCAAATAAGTTGA 58.254 40.909 0.00 0.00 39.87 3.18
2541 4477 4.475944 CTTCCAGCGAACCAAATAAGTTG 58.524 43.478 0.00 0.00 36.94 3.16
2544 4480 2.487762 TGCTTCCAGCGAACCAAATAAG 59.512 45.455 0.00 0.00 46.26 1.73
2545 4481 2.227865 GTGCTTCCAGCGAACCAAATAA 59.772 45.455 0.00 0.00 46.26 1.40
2595 4531 1.509787 CACGTCTGAAATTGCGGCG 60.510 57.895 0.51 0.51 0.00 6.46
2628 4564 6.227522 TCCTTCGTCTGTTTCATGATTTACA 58.772 36.000 0.00 0.97 0.00 2.41
2656 4592 5.465532 TCATCTCTGACATTAGCATCTCC 57.534 43.478 0.00 0.00 0.00 3.71
2669 4605 1.492764 TGAGGCTGCATCATCTCTGA 58.507 50.000 13.56 0.00 35.41 3.27
2719 4655 1.002888 CATGGAGTCTGCTTCCACACT 59.997 52.381 0.00 0.00 36.24 3.55
2856 4792 1.095600 TCCACGAGTCCGAAGATGAG 58.904 55.000 0.00 0.00 39.50 2.90
2858 4794 1.845266 CATCCACGAGTCCGAAGATG 58.155 55.000 0.00 0.00 39.93 2.90
2945 4881 3.226429 GAGGCAGCACAGGTCGTCA 62.226 63.158 0.00 0.00 0.00 4.35
3016 4952 4.039852 TGAACTCTGCTTGTATACCACACA 59.960 41.667 0.00 0.00 36.69 3.72
3028 4964 1.690893 TGACAGCTCTGAACTCTGCTT 59.309 47.619 3.60 0.00 33.03 3.91
3135 5071 1.513158 CTCGACCGAGACATTGGCT 59.487 57.895 13.64 0.00 44.53 4.75
3137 5073 0.101399 CTCCTCGACCGAGACATTGG 59.899 60.000 19.70 4.12 44.53 3.16
3190 5126 4.704833 ACCATTGCTCGGCTGCGT 62.705 61.111 0.00 0.00 35.36 5.24
3399 5335 1.068127 ACAAGTAGCTGAACGAACGGT 59.932 47.619 0.00 0.00 0.00 4.83
3514 5539 2.564771 AGCCATGTACATCCATCGTTG 58.435 47.619 5.07 0.00 0.00 4.10
3653 5693 2.438021 AGTGGCCAAGTGACTTGAGTAA 59.562 45.455 25.75 6.41 43.42 2.24
3699 5742 1.303074 GTTCGGGTCCCCAGTTTCC 60.303 63.158 1.00 0.00 35.37 3.13
3738 5782 0.520404 AGCTAAGTTCGCGACGAAGA 59.480 50.000 9.15 0.00 46.54 2.87
3740 5784 2.617250 TTAGCTAAGTTCGCGACGAA 57.383 45.000 9.15 9.97 43.75 3.85
3765 5813 5.644644 ACCGTACTCAGAATAAGGTTAACG 58.355 41.667 0.00 0.00 31.24 3.18
3817 5865 9.242477 GTTAACCGTACTCAGAATAAGGTTATC 57.758 37.037 14.69 11.28 42.45 1.75
3818 5866 8.752187 TGTTAACCGTACTCAGAATAAGGTTAT 58.248 33.333 14.69 0.00 42.45 1.89
3819 5867 8.028938 GTGTTAACCGTACTCAGAATAAGGTTA 58.971 37.037 11.15 11.15 41.00 2.85
3820 5868 6.870439 GTGTTAACCGTACTCAGAATAAGGTT 59.130 38.462 12.91 12.91 43.81 3.50
3821 5869 6.393171 GTGTTAACCGTACTCAGAATAAGGT 58.607 40.000 2.48 0.00 36.14 3.50
3822 5870 5.514204 CGTGTTAACCGTACTCAGAATAAGG 59.486 44.000 2.48 0.00 0.00 2.69
3823 5871 6.317088 TCGTGTTAACCGTACTCAGAATAAG 58.683 40.000 13.67 0.00 0.00 1.73
3824 5872 6.072508 ACTCGTGTTAACCGTACTCAGAATAA 60.073 38.462 13.67 0.00 0.00 1.40
3825 5873 5.412594 ACTCGTGTTAACCGTACTCAGAATA 59.587 40.000 13.67 0.00 0.00 1.75
3826 5874 4.217118 ACTCGTGTTAACCGTACTCAGAAT 59.783 41.667 13.67 0.00 0.00 2.40
3827 5875 3.565482 ACTCGTGTTAACCGTACTCAGAA 59.435 43.478 13.67 0.00 0.00 3.02
3828 5876 3.141398 ACTCGTGTTAACCGTACTCAGA 58.859 45.455 13.67 0.00 0.00 3.27
3829 5877 3.549299 ACTCGTGTTAACCGTACTCAG 57.451 47.619 13.67 7.89 0.00 3.35
3830 5878 5.627499 ATTACTCGTGTTAACCGTACTCA 57.373 39.130 13.67 0.00 0.00 3.41
3831 5879 6.542852 TGTATTACTCGTGTTAACCGTACTC 58.457 40.000 13.67 4.10 0.00 2.59
3832 5880 6.494893 TGTATTACTCGTGTTAACCGTACT 57.505 37.500 13.67 4.08 0.00 2.73
3833 5881 6.801862 ACTTGTATTACTCGTGTTAACCGTAC 59.198 38.462 13.67 9.97 0.00 3.67
3834 5882 6.908825 ACTTGTATTACTCGTGTTAACCGTA 58.091 36.000 13.67 4.06 0.00 4.02
3835 5883 5.772521 ACTTGTATTACTCGTGTTAACCGT 58.227 37.500 13.67 4.85 0.00 4.83
3836 5884 6.695292 AACTTGTATTACTCGTGTTAACCG 57.305 37.500 2.48 6.64 0.00 4.44
3837 5885 8.006027 GTGAAACTTGTATTACTCGTGTTAACC 58.994 37.037 2.48 0.00 0.00 2.85
3838 5886 7.733011 CGTGAAACTTGTATTACTCGTGTTAAC 59.267 37.037 0.00 0.00 31.75 2.01
3839 5887 7.647318 TCGTGAAACTTGTATTACTCGTGTTAA 59.353 33.333 0.00 0.00 31.75 2.01
3840 5888 7.138081 TCGTGAAACTTGTATTACTCGTGTTA 58.862 34.615 0.00 0.00 31.75 2.41
3841 5889 5.978919 TCGTGAAACTTGTATTACTCGTGTT 59.021 36.000 0.00 0.00 31.75 3.32
3842 5890 5.522456 TCGTGAAACTTGTATTACTCGTGT 58.478 37.500 0.00 0.00 31.75 4.49
3843 5891 6.361481 TCTTCGTGAAACTTGTATTACTCGTG 59.639 38.462 0.00 0.00 31.75 4.35
3844 5892 6.361748 GTCTTCGTGAAACTTGTATTACTCGT 59.638 38.462 0.00 0.00 31.75 4.18
3845 5893 6.361481 TGTCTTCGTGAAACTTGTATTACTCG 59.639 38.462 0.00 0.00 31.75 4.18
3846 5894 7.168637 TGTGTCTTCGTGAAACTTGTATTACTC 59.831 37.037 0.00 0.00 34.05 2.59
3847 5895 6.982141 TGTGTCTTCGTGAAACTTGTATTACT 59.018 34.615 0.00 0.00 34.05 2.24
3848 5896 7.169035 TGTGTCTTCGTGAAACTTGTATTAC 57.831 36.000 3.91 0.00 34.05 1.89
3849 5897 7.956420 ATGTGTCTTCGTGAAACTTGTATTA 57.044 32.000 3.91 0.00 34.05 0.98
3850 5898 6.861065 ATGTGTCTTCGTGAAACTTGTATT 57.139 33.333 3.91 0.00 34.05 1.89
3851 5899 7.956420 TTATGTGTCTTCGTGAAACTTGTAT 57.044 32.000 3.91 0.00 34.05 2.29
3852 5900 7.956420 ATTATGTGTCTTCGTGAAACTTGTA 57.044 32.000 3.91 0.00 34.05 2.41
3853 5901 6.861065 ATTATGTGTCTTCGTGAAACTTGT 57.139 33.333 3.91 0.00 34.05 3.16
3854 5902 7.792925 TGTATTATGTGTCTTCGTGAAACTTG 58.207 34.615 3.91 0.00 34.05 3.16
3855 5903 7.956420 TGTATTATGTGTCTTCGTGAAACTT 57.044 32.000 3.91 1.10 34.05 2.66
3856 5904 7.656137 ACTTGTATTATGTGTCTTCGTGAAACT 59.344 33.333 3.91 0.00 34.05 2.66
3857 5905 7.793902 ACTTGTATTATGTGTCTTCGTGAAAC 58.206 34.615 0.00 0.00 33.53 2.78
3858 5906 7.956420 ACTTGTATTATGTGTCTTCGTGAAA 57.044 32.000 0.00 0.00 0.00 2.69
3859 5907 7.956420 AACTTGTATTATGTGTCTTCGTGAA 57.044 32.000 0.00 0.00 0.00 3.18
3860 5908 7.654116 TGAAACTTGTATTATGTGTCTTCGTGA 59.346 33.333 0.00 0.00 0.00 4.35
3861 5909 7.740346 GTGAAACTTGTATTATGTGTCTTCGTG 59.260 37.037 0.00 0.00 0.00 4.35
3862 5910 7.358931 CGTGAAACTTGTATTATGTGTCTTCGT 60.359 37.037 0.00 0.00 31.75 3.85
3863 5911 6.948228 CGTGAAACTTGTATTATGTGTCTTCG 59.052 38.462 0.00 0.00 31.75 3.79
3864 5912 8.014322 TCGTGAAACTTGTATTATGTGTCTTC 57.986 34.615 0.00 0.00 31.75 2.87
3865 5913 7.956420 TCGTGAAACTTGTATTATGTGTCTT 57.044 32.000 0.00 0.00 31.75 3.01
3866 5914 7.117812 CCTTCGTGAAACTTGTATTATGTGTCT 59.882 37.037 0.00 0.00 31.75 3.41
3867 5915 7.095355 ACCTTCGTGAAACTTGTATTATGTGTC 60.095 37.037 0.00 0.00 31.75 3.67
3868 5916 6.708949 ACCTTCGTGAAACTTGTATTATGTGT 59.291 34.615 0.00 0.00 31.75 3.72
3869 5917 7.129109 ACCTTCGTGAAACTTGTATTATGTG 57.871 36.000 0.00 0.00 31.75 3.21
3870 5918 7.739498 AACCTTCGTGAAACTTGTATTATGT 57.261 32.000 0.00 0.00 31.75 2.29
3871 5919 9.537848 GTTAACCTTCGTGAAACTTGTATTATG 57.462 33.333 0.00 0.00 31.75 1.90
3872 5920 8.724229 GGTTAACCTTCGTGAAACTTGTATTAT 58.276 33.333 17.83 0.00 31.75 1.28
3873 5921 7.933033 AGGTTAACCTTCGTGAAACTTGTATTA 59.067 33.333 21.96 0.00 46.09 0.98
3874 5922 6.769341 AGGTTAACCTTCGTGAAACTTGTATT 59.231 34.615 21.96 0.00 46.09 1.89
3875 5923 6.293698 AGGTTAACCTTCGTGAAACTTGTAT 58.706 36.000 21.96 0.00 46.09 2.29
3876 5924 5.673514 AGGTTAACCTTCGTGAAACTTGTA 58.326 37.500 21.96 0.00 46.09 2.41
3877 5925 4.520179 AGGTTAACCTTCGTGAAACTTGT 58.480 39.130 21.96 0.00 46.09 3.16
3891 5939 4.807834 GCCGTACTCAGAATAAGGTTAACC 59.192 45.833 17.41 17.41 0.00 2.85
3892 5940 5.658468 AGCCGTACTCAGAATAAGGTTAAC 58.342 41.667 0.00 0.00 0.00 2.01
3893 5941 5.927281 AGCCGTACTCAGAATAAGGTTAA 57.073 39.130 0.00 0.00 0.00 2.01
3894 5942 6.377996 TGTTAGCCGTACTCAGAATAAGGTTA 59.622 38.462 0.00 0.00 0.00 2.85
3895 5943 5.186409 TGTTAGCCGTACTCAGAATAAGGTT 59.814 40.000 0.00 0.00 0.00 3.50
3896 5944 4.708421 TGTTAGCCGTACTCAGAATAAGGT 59.292 41.667 0.00 0.00 0.00 3.50
3897 5945 5.041940 GTGTTAGCCGTACTCAGAATAAGG 58.958 45.833 0.00 0.00 0.00 2.69
3898 5946 4.733887 CGTGTTAGCCGTACTCAGAATAAG 59.266 45.833 0.00 0.00 0.00 1.73
3899 5947 4.395854 TCGTGTTAGCCGTACTCAGAATAA 59.604 41.667 0.00 0.00 0.00 1.40
3900 5948 3.940852 TCGTGTTAGCCGTACTCAGAATA 59.059 43.478 0.00 0.00 0.00 1.75
3901 5949 2.751259 TCGTGTTAGCCGTACTCAGAAT 59.249 45.455 0.00 0.00 0.00 2.40
3902 5950 2.153645 TCGTGTTAGCCGTACTCAGAA 58.846 47.619 0.00 0.00 0.00 3.02
3903 5951 1.736126 CTCGTGTTAGCCGTACTCAGA 59.264 52.381 0.00 0.00 0.00 3.27
3904 5952 1.467734 ACTCGTGTTAGCCGTACTCAG 59.532 52.381 0.00 0.00 0.00 3.35
3905 5953 1.527034 ACTCGTGTTAGCCGTACTCA 58.473 50.000 0.00 0.00 0.00 3.41
3906 5954 3.747099 TTACTCGTGTTAGCCGTACTC 57.253 47.619 0.00 0.00 0.00 2.59
3907 5955 3.733077 GCATTACTCGTGTTAGCCGTACT 60.733 47.826 0.00 0.00 0.00 2.73
3908 5956 2.533129 GCATTACTCGTGTTAGCCGTAC 59.467 50.000 0.00 0.00 0.00 3.67
3909 5957 2.164017 TGCATTACTCGTGTTAGCCGTA 59.836 45.455 0.00 0.00 0.00 4.02
3910 5958 1.067425 TGCATTACTCGTGTTAGCCGT 60.067 47.619 0.00 0.00 0.00 5.68
3911 5959 1.635844 TGCATTACTCGTGTTAGCCG 58.364 50.000 0.00 0.00 0.00 5.52
3912 5960 3.000727 ACTTGCATTACTCGTGTTAGCC 58.999 45.455 0.00 0.00 0.00 3.93
3913 5961 4.663636 AACTTGCATTACTCGTGTTAGC 57.336 40.909 0.00 0.00 0.00 3.09
3914 5962 6.071463 GTGAAACTTGCATTACTCGTGTTAG 58.929 40.000 0.00 0.00 0.00 2.34
3915 5963 5.332732 CGTGAAACTTGCATTACTCGTGTTA 60.333 40.000 0.00 0.00 31.75 2.41
3916 5964 4.551990 CGTGAAACTTGCATTACTCGTGTT 60.552 41.667 0.00 0.00 31.75 3.32
3917 5965 3.059868 CGTGAAACTTGCATTACTCGTGT 60.060 43.478 0.00 0.00 31.75 4.49
3918 5966 3.183574 TCGTGAAACTTGCATTACTCGTG 59.816 43.478 0.00 0.00 31.75 4.35
3919 5967 3.386486 TCGTGAAACTTGCATTACTCGT 58.614 40.909 0.00 0.00 31.75 4.18
3920 5968 4.149922 TCTTCGTGAAACTTGCATTACTCG 59.850 41.667 0.00 0.00 31.75 4.18
3921 5969 5.050363 TGTCTTCGTGAAACTTGCATTACTC 60.050 40.000 0.00 0.00 31.75 2.59
3922 5970 4.814234 TGTCTTCGTGAAACTTGCATTACT 59.186 37.500 0.00 0.00 31.75 2.24
3923 5971 4.904154 GTGTCTTCGTGAAACTTGCATTAC 59.096 41.667 0.00 0.00 30.29 1.89
3924 5972 4.572795 TGTGTCTTCGTGAAACTTGCATTA 59.427 37.500 0.00 0.00 34.05 1.90
3925 5973 3.376859 TGTGTCTTCGTGAAACTTGCATT 59.623 39.130 0.00 0.00 34.05 3.56
3926 5974 2.942376 TGTGTCTTCGTGAAACTTGCAT 59.058 40.909 0.00 0.00 34.05 3.96
3927 5975 2.351455 TGTGTCTTCGTGAAACTTGCA 58.649 42.857 0.00 0.00 34.05 4.08
3928 5976 3.609103 ATGTGTCTTCGTGAAACTTGC 57.391 42.857 3.91 0.00 34.05 4.01
3929 5977 5.236478 ACCTTATGTGTCTTCGTGAAACTTG 59.764 40.000 3.91 0.00 34.05 3.16
3930 5978 5.236478 CACCTTATGTGTCTTCGTGAAACTT 59.764 40.000 3.91 1.10 40.26 2.66
3931 5979 4.750098 CACCTTATGTGTCTTCGTGAAACT 59.250 41.667 3.91 0.00 40.26 2.66
3932 5980 5.018695 CACCTTATGTGTCTTCGTGAAAC 57.981 43.478 0.00 0.00 40.26 2.78
4075 6123 1.202330 CCTGCATGGAAGGTCTCTCT 58.798 55.000 0.00 0.00 38.35 3.10
4080 6128 1.303561 TGTGCCTGCATGGAAGGTC 60.304 57.895 6.40 0.00 37.13 3.85
4084 6132 0.111061 AACTCTGTGCCTGCATGGAA 59.889 50.000 6.40 0.00 38.35 3.53
4085 6133 0.111061 AAACTCTGTGCCTGCATGGA 59.889 50.000 6.40 0.00 38.35 3.41
4090 6138 1.510480 AAGCGAAACTCTGTGCCTGC 61.510 55.000 0.00 0.00 0.00 4.85
4093 6141 0.884704 TGGAAGCGAAACTCTGTGCC 60.885 55.000 0.00 0.00 0.00 5.01
4094 6142 0.944386 TTGGAAGCGAAACTCTGTGC 59.056 50.000 0.00 0.00 0.00 4.57
4134 6182 8.358148 TGTTTATTTTCTCGTCTTGTAGAGAGT 58.642 33.333 0.00 0.00 43.42 3.24
4141 6189 5.008316 GGGTGTGTTTATTTTCTCGTCTTGT 59.992 40.000 0.00 0.00 0.00 3.16
4142 6190 5.449304 GGGTGTGTTTATTTTCTCGTCTTG 58.551 41.667 0.00 0.00 0.00 3.02
4143 6191 4.517832 GGGGTGTGTTTATTTTCTCGTCTT 59.482 41.667 0.00 0.00 0.00 3.01
4144 6192 4.070009 GGGGTGTGTTTATTTTCTCGTCT 58.930 43.478 0.00 0.00 0.00 4.18
4145 6193 4.070009 AGGGGTGTGTTTATTTTCTCGTC 58.930 43.478 0.00 0.00 0.00 4.20
4146 6194 3.818773 CAGGGGTGTGTTTATTTTCTCGT 59.181 43.478 0.00 0.00 0.00 4.18
4147 6195 3.818773 ACAGGGGTGTGTTTATTTTCTCG 59.181 43.478 0.00 0.00 0.00 4.04
4148 6196 4.083484 CGACAGGGGTGTGTTTATTTTCTC 60.083 45.833 0.00 0.00 0.00 2.87
4149 6197 3.818773 CGACAGGGGTGTGTTTATTTTCT 59.181 43.478 0.00 0.00 0.00 2.52
4150 6198 3.057806 CCGACAGGGGTGTGTTTATTTTC 60.058 47.826 0.00 0.00 0.00 2.29
4151 6199 2.888414 CCGACAGGGGTGTGTTTATTTT 59.112 45.455 0.00 0.00 0.00 1.82
4152 6200 2.510613 CCGACAGGGGTGTGTTTATTT 58.489 47.619 0.00 0.00 0.00 1.40
4153 6201 1.884928 GCCGACAGGGGTGTGTTTATT 60.885 52.381 0.00 0.00 38.20 1.40
4154 6202 0.322187 GCCGACAGGGGTGTGTTTAT 60.322 55.000 0.00 0.00 38.20 1.40
4155 6203 1.071814 GCCGACAGGGGTGTGTTTA 59.928 57.895 0.00 0.00 38.20 2.01
4156 6204 2.203294 GCCGACAGGGGTGTGTTT 60.203 61.111 0.00 0.00 38.20 2.83
4157 6205 4.619227 CGCCGACAGGGGTGTGTT 62.619 66.667 0.00 0.00 44.60 3.32
4165 6213 4.680237 TGCCAGAACGCCGACAGG 62.680 66.667 0.00 0.00 41.62 4.00
4166 6214 2.664851 TTGCCAGAACGCCGACAG 60.665 61.111 0.00 0.00 0.00 3.51
4167 6215 2.970324 GTTGCCAGAACGCCGACA 60.970 61.111 0.00 0.00 0.00 4.35
4168 6216 3.723348 GGTTGCCAGAACGCCGAC 61.723 66.667 0.00 0.00 0.00 4.79
4173 6221 2.530958 ATACCCCGGTTGCCAGAACG 62.531 60.000 0.00 0.00 0.00 3.95
4174 6222 0.746923 GATACCCCGGTTGCCAGAAC 60.747 60.000 0.00 0.00 0.00 3.01
4175 6223 1.605453 GATACCCCGGTTGCCAGAA 59.395 57.895 0.00 0.00 0.00 3.02
4176 6224 2.372074 GGATACCCCGGTTGCCAGA 61.372 63.158 0.00 0.00 0.00 3.86
4177 6225 1.994885 ATGGATACCCCGGTTGCCAG 61.995 60.000 0.00 0.00 37.93 4.85
4178 6226 0.694783 TATGGATACCCCGGTTGCCA 60.695 55.000 0.00 9.12 37.93 4.92
4179 6227 0.250597 GTATGGATACCCCGGTTGCC 60.251 60.000 0.00 0.00 37.93 4.52
4180 6228 0.763035 AGTATGGATACCCCGGTTGC 59.237 55.000 0.00 0.00 37.93 4.17
4181 6229 2.846193 CAAGTATGGATACCCCGGTTG 58.154 52.381 0.00 0.00 37.93 3.77
4182 6230 1.142262 GCAAGTATGGATACCCCGGTT 59.858 52.381 0.00 0.00 37.93 4.44
4183 6231 0.763035 GCAAGTATGGATACCCCGGT 59.237 55.000 0.00 0.00 37.93 5.28
4184 6232 0.036306 GGCAAGTATGGATACCCCGG 59.964 60.000 0.00 0.00 37.93 5.73
4185 6233 1.056660 AGGCAAGTATGGATACCCCG 58.943 55.000 0.00 0.00 37.93 5.73
4186 6234 2.054799 TCAGGCAAGTATGGATACCCC 58.945 52.381 0.00 0.00 33.79 4.95
4187 6235 2.706190 AGTCAGGCAAGTATGGATACCC 59.294 50.000 0.00 0.00 33.79 3.69
4188 6236 3.733337 CAGTCAGGCAAGTATGGATACC 58.267 50.000 0.00 0.00 33.79 2.73
4189 6237 3.134458 GCAGTCAGGCAAGTATGGATAC 58.866 50.000 0.00 0.00 0.00 2.24
4190 6238 2.224042 CGCAGTCAGGCAAGTATGGATA 60.224 50.000 0.00 0.00 0.00 2.59
4191 6239 1.473965 CGCAGTCAGGCAAGTATGGAT 60.474 52.381 0.00 0.00 0.00 3.41
4192 6240 0.108186 CGCAGTCAGGCAAGTATGGA 60.108 55.000 0.00 0.00 0.00 3.41
4193 6241 1.091771 CCGCAGTCAGGCAAGTATGG 61.092 60.000 0.00 0.00 0.00 2.74
4194 6242 2.387309 CCGCAGTCAGGCAAGTATG 58.613 57.895 0.00 0.00 0.00 2.39
4195 6243 4.941609 CCGCAGTCAGGCAAGTAT 57.058 55.556 0.00 0.00 0.00 2.12
4226 6274 3.151710 TACCAGGCCGTCGATGGG 61.152 66.667 24.85 13.14 38.48 4.00
4227 6275 2.106332 GTACCAGGCCGTCGATGG 59.894 66.667 19.87 19.87 40.10 3.51
4228 6276 2.278596 CGTACCAGGCCGTCGATG 60.279 66.667 0.00 0.00 0.00 3.84
4229 6277 3.524606 CCGTACCAGGCCGTCGAT 61.525 66.667 0.00 0.00 0.00 3.59
4237 6285 1.146263 GAAGATGGGCCGTACCAGG 59.854 63.158 0.00 0.00 45.20 4.45
4238 6286 0.251916 TTGAAGATGGGCCGTACCAG 59.748 55.000 0.00 0.00 45.20 4.00
4239 6287 0.035820 GTTGAAGATGGGCCGTACCA 60.036 55.000 0.00 0.00 46.24 3.25
4240 6288 0.035820 TGTTGAAGATGGGCCGTACC 60.036 55.000 0.00 0.00 37.93 3.34
4241 6289 1.084289 GTGTTGAAGATGGGCCGTAC 58.916 55.000 0.00 0.00 0.00 3.67
4242 6290 0.035820 GGTGTTGAAGATGGGCCGTA 60.036 55.000 0.00 0.00 0.00 4.02
4243 6291 1.303317 GGTGTTGAAGATGGGCCGT 60.303 57.895 0.00 0.00 0.00 5.68
4244 6292 0.893270 TTGGTGTTGAAGATGGGCCG 60.893 55.000 0.00 0.00 0.00 6.13
4245 6293 0.603065 GTTGGTGTTGAAGATGGGCC 59.397 55.000 0.00 0.00 0.00 5.80
4246 6294 1.327303 TGTTGGTGTTGAAGATGGGC 58.673 50.000 0.00 0.00 0.00 5.36
4247 6295 2.692557 TGTTGTTGGTGTTGAAGATGGG 59.307 45.455 0.00 0.00 0.00 4.00
4248 6296 3.130164 TGTGTTGTTGGTGTTGAAGATGG 59.870 43.478 0.00 0.00 0.00 3.51
4249 6297 4.368874 TGTGTTGTTGGTGTTGAAGATG 57.631 40.909 0.00 0.00 0.00 2.90
4250 6298 4.704540 TCTTGTGTTGTTGGTGTTGAAGAT 59.295 37.500 0.00 0.00 0.00 2.40
4251 6299 4.075682 TCTTGTGTTGTTGGTGTTGAAGA 58.924 39.130 0.00 0.00 0.00 2.87
4252 6300 4.165779 GTCTTGTGTTGTTGGTGTTGAAG 58.834 43.478 0.00 0.00 0.00 3.02
4253 6301 3.057174 GGTCTTGTGTTGTTGGTGTTGAA 60.057 43.478 0.00 0.00 0.00 2.69
4254 6302 2.490115 GGTCTTGTGTTGTTGGTGTTGA 59.510 45.455 0.00 0.00 0.00 3.18
4255 6303 2.416701 GGGTCTTGTGTTGTTGGTGTTG 60.417 50.000 0.00 0.00 0.00 3.33
4256 6304 1.822371 GGGTCTTGTGTTGTTGGTGTT 59.178 47.619 0.00 0.00 0.00 3.32
4257 6305 1.005450 AGGGTCTTGTGTTGTTGGTGT 59.995 47.619 0.00 0.00 0.00 4.16
4258 6306 1.676006 GAGGGTCTTGTGTTGTTGGTG 59.324 52.381 0.00 0.00 0.00 4.17
4259 6307 1.745827 CGAGGGTCTTGTGTTGTTGGT 60.746 52.381 0.00 0.00 0.00 3.67
4260 6308 0.944386 CGAGGGTCTTGTGTTGTTGG 59.056 55.000 0.00 0.00 0.00 3.77
4261 6309 0.307760 GCGAGGGTCTTGTGTTGTTG 59.692 55.000 0.00 0.00 0.00 3.33
4262 6310 1.157870 CGCGAGGGTCTTGTGTTGTT 61.158 55.000 0.00 0.00 0.00 2.83
4263 6311 1.594293 CGCGAGGGTCTTGTGTTGT 60.594 57.895 0.00 0.00 0.00 3.32
4264 6312 1.284982 CTCGCGAGGGTCTTGTGTTG 61.285 60.000 28.40 0.00 0.00 3.33
4265 6313 1.006102 CTCGCGAGGGTCTTGTGTT 60.006 57.895 28.40 0.00 0.00 3.32
4266 6314 2.651361 CTCGCGAGGGTCTTGTGT 59.349 61.111 28.40 0.00 0.00 3.72
4267 6315 2.125912 CCTCGCGAGGGTCTTGTG 60.126 66.667 41.47 17.83 44.87 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.