Multiple sequence alignment - TraesCS4D01G124700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G124700 chr4D 100.000 2825 0 0 1 2825 109074335 109071511 0.000000e+00 5217.0
1 TraesCS4D01G124700 chr4D 90.426 188 11 4 2459 2640 109026801 109026615 1.010000e-59 241.0
2 TraesCS4D01G124700 chr4D 97.872 47 1 0 2284 2330 109071648 109071602 6.490000e-12 82.4
3 TraesCS4D01G124700 chr4D 97.872 47 1 0 2688 2734 109072052 109072006 6.490000e-12 82.4
4 TraesCS4D01G124700 chrUn 91.061 1969 77 35 718 2640 47069145 47067230 0.000000e+00 2569.0
5 TraesCS4D01G124700 chrUn 91.061 1969 77 35 718 2640 288708375 288710290 0.000000e+00 2569.0
6 TraesCS4D01G124700 chrUn 91.543 473 26 5 2152 2614 47066261 47065793 8.530000e-180 640.0
7 TraesCS4D01G124700 chrUn 91.543 473 26 5 2152 2614 288711259 288711727 8.530000e-180 640.0
8 TraesCS4D01G124700 chrUn 91.543 473 26 5 2152 2614 409127584 409127116 8.530000e-180 640.0
9 TraesCS4D01G124700 chrUn 82.432 370 25 21 1 339 47069648 47069288 1.280000e-73 287.0
10 TraesCS4D01G124700 chrUn 82.432 370 25 21 1 339 288707872 288708232 1.280000e-73 287.0
11 TraesCS4D01G124700 chr4B 92.884 1602 58 22 669 2241 167586773 167588347 0.000000e+00 2276.0
12 TraesCS4D01G124700 chr4B 86.339 366 19 12 192 530 167586339 167586700 1.240000e-98 370.0
13 TraesCS4D01G124700 chr4B 98.413 63 1 0 128 190 167586244 167586306 8.270000e-21 111.0
14 TraesCS4D01G124700 chr2A 89.040 1250 60 31 669 1880 723236650 723237860 0.000000e+00 1478.0
15 TraesCS4D01G124700 chr2A 90.721 1013 51 18 876 1880 723225861 723226838 0.000000e+00 1310.0
16 TraesCS4D01G124700 chr2A 91.071 168 8 2 2479 2640 723228127 723228293 1.320000e-53 220.0
17 TraesCS4D01G124700 chr2A 85.075 201 18 4 128 321 723224981 723225176 7.990000e-46 195.0
18 TraesCS4D01G124700 chr2A 85.427 199 15 9 128 318 723234819 723235011 7.990000e-46 195.0
19 TraesCS4D01G124700 chr2A 84.043 188 13 8 662 834 723225669 723225854 6.260000e-37 165.0
20 TraesCS4D01G124700 chr5A 78.590 780 120 32 1076 1824 313314005 313314768 3.290000e-129 472.0
21 TraesCS4D01G124700 chr5B 77.850 772 131 30 1076 1824 263220962 263221716 2.580000e-120 442.0
22 TraesCS4D01G124700 chr5B 85.333 75 7 1 2731 2801 528993656 528993730 1.090000e-09 75.0
23 TraesCS4D01G124700 chr5D 77.665 788 124 36 1071 1824 240502982 240502213 1.550000e-117 433.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G124700 chr4D 109071511 109074335 2824 True 1793.933333 5217 98.581333 1 2825 3 chr4D.!!$R2 2824
1 TraesCS4D01G124700 chrUn 47065793 47069648 3855 True 1165.333333 2569 88.345333 1 2640 3 chrUn.!!$R2 2639
2 TraesCS4D01G124700 chrUn 288707872 288711727 3855 False 1165.333333 2569 88.345333 1 2640 3 chrUn.!!$F1 2639
3 TraesCS4D01G124700 chr4B 167586244 167588347 2103 False 919.000000 2276 92.545333 128 2241 3 chr4B.!!$F1 2113
4 TraesCS4D01G124700 chr2A 723234819 723237860 3041 False 836.500000 1478 87.233500 128 1880 2 chr2A.!!$F2 1752
5 TraesCS4D01G124700 chr2A 723224981 723228293 3312 False 472.500000 1310 87.727500 128 2640 4 chr2A.!!$F1 2512
6 TraesCS4D01G124700 chr5A 313314005 313314768 763 False 472.000000 472 78.590000 1076 1824 1 chr5A.!!$F1 748
7 TraesCS4D01G124700 chr5B 263220962 263221716 754 False 442.000000 442 77.850000 1076 1824 1 chr5B.!!$F1 748
8 TraesCS4D01G124700 chr5D 240502213 240502982 769 True 433.000000 433 77.665000 1071 1824 1 chr5D.!!$R1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 256 0.04109 TGGCCCTCCCCTTTTGATTC 59.959 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 4471 0.39206 AGCCCCAACCGTAATCGTTC 60.392 55.0 0.0 0.0 35.01 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.674764 CCTGCTGTTGGTTTGGTGCA 61.675 55.000 0.00 0.00 0.00 4.57
23 24 0.175302 CTGCTGTTGGTTTGGTGCAA 59.825 50.000 0.00 0.00 0.00 4.08
48 49 3.043999 GCAACCCCGGATAGGCAGT 62.044 63.158 0.73 0.00 39.21 4.40
59 60 3.678806 CGGATAGGCAGTTAGTCAAAGCA 60.679 47.826 0.00 0.00 0.00 3.91
91 92 9.438228 CTATATATCGACCATCATCCTACGTAT 57.562 37.037 0.00 0.00 0.00 3.06
93 94 9.961264 ATATATCGACCATCATCCTACGTATAT 57.039 33.333 0.00 0.00 0.00 0.86
95 96 6.915544 TCGACCATCATCCTACGTATATAC 57.084 41.667 2.53 2.53 0.00 1.47
96 97 5.819379 TCGACCATCATCCTACGTATATACC 59.181 44.000 7.30 0.00 0.00 2.73
97 98 5.587443 CGACCATCATCCTACGTATATACCA 59.413 44.000 7.30 0.00 0.00 3.25
98 99 6.238402 CGACCATCATCCTACGTATATACCAG 60.238 46.154 7.30 4.98 0.00 4.00
99 100 6.728411 ACCATCATCCTACGTATATACCAGA 58.272 40.000 7.30 0.12 0.00 3.86
100 101 6.829298 ACCATCATCCTACGTATATACCAGAG 59.171 42.308 7.30 2.49 0.00 3.35
101 102 6.238786 CCATCATCCTACGTATATACCAGAGC 60.239 46.154 7.30 0.00 0.00 4.09
102 103 6.063496 TCATCCTACGTATATACCAGAGCT 57.937 41.667 7.30 0.00 0.00 4.09
103 104 7.191593 TCATCCTACGTATATACCAGAGCTA 57.808 40.000 7.30 0.00 0.00 3.32
104 105 7.627311 TCATCCTACGTATATACCAGAGCTAA 58.373 38.462 7.30 0.00 0.00 3.09
107 108 8.696043 TCCTACGTATATACCAGAGCTAAAAA 57.304 34.615 7.30 0.00 0.00 1.94
108 109 8.571336 TCCTACGTATATACCAGAGCTAAAAAC 58.429 37.037 7.30 0.00 0.00 2.43
110 111 9.740239 CTACGTATATACCAGAGCTAAAAACAA 57.260 33.333 7.30 0.00 0.00 2.83
177 200 3.564225 CCTCACACGCTTTTCCTACTTTT 59.436 43.478 0.00 0.00 0.00 2.27
202 256 0.041090 TGGCCCTCCCCTTTTGATTC 59.959 55.000 0.00 0.00 0.00 2.52
256 316 7.646314 AGTACTAACTACGTACATTGCCTATG 58.354 38.462 0.00 0.00 39.66 2.23
296 364 2.223377 GTGGTTGCGTTTCCTTGTCTAG 59.777 50.000 0.00 0.00 0.00 2.43
372 651 8.630054 ACTGAAAACCTGTATTACAAGCATTA 57.370 30.769 0.00 0.00 0.00 1.90
386 665 4.449068 ACAAGCATTACAAGACAAGACGAG 59.551 41.667 0.00 0.00 0.00 4.18
422 718 0.602905 AGTAGAGGCACCGTTGTTGC 60.603 55.000 0.00 0.00 0.00 4.17
455 752 9.784531 AAGATATTCGTTCATTATTCCACAGAT 57.215 29.630 0.00 0.00 0.00 2.90
461 759 7.207383 TCGTTCATTATTCCACAGATAATCGT 58.793 34.615 0.00 0.00 0.00 3.73
467 765 4.335082 TTCCACAGATAATCGTTTTGCG 57.665 40.909 0.00 0.00 43.01 4.85
486 784 1.278238 GTCTGGAACCGCGAGTAATG 58.722 55.000 8.23 0.00 0.00 1.90
518 816 0.884514 TCAGGTCTCTGTCAAGCTCG 59.115 55.000 0.00 0.00 41.59 5.03
519 817 0.108898 CAGGTCTCTGTCAAGCTCGG 60.109 60.000 0.00 0.00 36.30 4.63
521 819 0.820871 GGTCTCTGTCAAGCTCGGAT 59.179 55.000 0.00 0.00 0.00 4.18
524 822 1.895798 TCTCTGTCAAGCTCGGATGTT 59.104 47.619 0.00 0.00 0.00 2.71
526 824 3.119459 TCTCTGTCAAGCTCGGATGTTAC 60.119 47.826 0.00 0.00 0.00 2.50
527 825 2.094182 TCTGTCAAGCTCGGATGTTACC 60.094 50.000 0.00 0.00 0.00 2.85
528 826 1.066430 TGTCAAGCTCGGATGTTACCC 60.066 52.381 0.00 0.00 0.00 3.69
530 828 1.153429 AAGCTCGGATGTTACCCGC 60.153 57.895 0.00 0.00 46.10 6.13
531 829 1.895020 AAGCTCGGATGTTACCCGCA 61.895 55.000 0.00 0.00 46.10 5.69
532 830 1.448893 GCTCGGATGTTACCCGCAA 60.449 57.895 0.00 0.00 46.10 4.85
533 831 1.022451 GCTCGGATGTTACCCGCAAA 61.022 55.000 0.00 0.00 46.10 3.68
534 832 1.444836 CTCGGATGTTACCCGCAAAA 58.555 50.000 0.00 0.00 46.10 2.44
535 833 1.807742 CTCGGATGTTACCCGCAAAAA 59.192 47.619 0.00 0.00 46.10 1.94
561 859 2.224354 ACTCGGATGTTAACCCGTGTTT 60.224 45.455 18.97 4.71 46.37 2.83
600 902 1.452399 GACGACTTGCTTTCGAGACAC 59.548 52.381 8.81 0.00 39.83 3.67
619 2090 4.088421 CGACGGCGTTTGAGCTAT 57.912 55.556 16.19 0.00 37.29 2.97
620 2091 1.631072 CGACGGCGTTTGAGCTATG 59.369 57.895 16.19 0.00 37.29 2.23
621 2092 0.800683 CGACGGCGTTTGAGCTATGA 60.801 55.000 16.19 0.00 37.29 2.15
622 2093 0.924090 GACGGCGTTTGAGCTATGAG 59.076 55.000 16.19 0.00 37.29 2.90
623 2094 0.246635 ACGGCGTTTGAGCTATGAGT 59.753 50.000 6.77 0.00 37.29 3.41
624 2095 1.337823 ACGGCGTTTGAGCTATGAGTT 60.338 47.619 6.77 0.00 37.29 3.01
625 2096 1.732259 CGGCGTTTGAGCTATGAGTTT 59.268 47.619 0.00 0.00 37.29 2.66
626 2097 2.927477 CGGCGTTTGAGCTATGAGTTTA 59.073 45.455 0.00 0.00 37.29 2.01
627 2098 3.555956 CGGCGTTTGAGCTATGAGTTTAT 59.444 43.478 0.00 0.00 37.29 1.40
628 2099 4.550831 CGGCGTTTGAGCTATGAGTTTATG 60.551 45.833 0.00 0.00 37.29 1.90
629 2100 4.332819 GGCGTTTGAGCTATGAGTTTATGT 59.667 41.667 0.00 0.00 37.29 2.29
630 2101 5.163754 GGCGTTTGAGCTATGAGTTTATGTT 60.164 40.000 0.00 0.00 37.29 2.71
631 2102 6.036735 GGCGTTTGAGCTATGAGTTTATGTTA 59.963 38.462 0.00 0.00 37.29 2.41
632 2103 7.119997 GCGTTTGAGCTATGAGTTTATGTTAG 58.880 38.462 0.00 0.00 0.00 2.34
633 2104 7.621991 CGTTTGAGCTATGAGTTTATGTTAGG 58.378 38.462 0.00 0.00 0.00 2.69
634 2105 7.277981 CGTTTGAGCTATGAGTTTATGTTAGGT 59.722 37.037 0.00 0.00 0.00 3.08
635 2106 8.947115 GTTTGAGCTATGAGTTTATGTTAGGTT 58.053 33.333 0.00 0.00 0.00 3.50
636 2107 9.515226 TTTGAGCTATGAGTTTATGTTAGGTTT 57.485 29.630 0.00 0.00 0.00 3.27
637 2108 9.515226 TTGAGCTATGAGTTTATGTTAGGTTTT 57.485 29.630 0.00 0.00 0.00 2.43
638 2109 9.515226 TGAGCTATGAGTTTATGTTAGGTTTTT 57.485 29.630 0.00 0.00 0.00 1.94
660 2131 4.314740 TTTTTGCGGTTGAGTTTATGCT 57.685 36.364 0.00 0.00 0.00 3.79
661 2132 5.440234 TTTTTGCGGTTGAGTTTATGCTA 57.560 34.783 0.00 0.00 0.00 3.49
662 2133 4.678509 TTTGCGGTTGAGTTTATGCTAG 57.321 40.909 0.00 0.00 0.00 3.42
663 2134 2.006888 TGCGGTTGAGTTTATGCTAGC 58.993 47.619 8.10 8.10 0.00 3.42
664 2135 2.280628 GCGGTTGAGTTTATGCTAGCT 58.719 47.619 17.23 4.07 0.00 3.32
665 2136 2.678336 GCGGTTGAGTTTATGCTAGCTT 59.322 45.455 17.23 12.56 0.00 3.74
666 2137 3.869246 GCGGTTGAGTTTATGCTAGCTTA 59.131 43.478 17.23 11.41 0.00 3.09
775 2265 4.838486 CCGACTCGACTCGCAGCC 62.838 72.222 8.72 0.00 31.98 4.85
776 2266 3.805307 CGACTCGACTCGCAGCCT 61.805 66.667 1.53 0.00 0.00 4.58
777 2267 2.101380 GACTCGACTCGCAGCCTC 59.899 66.667 0.00 0.00 0.00 4.70
778 2268 2.673341 ACTCGACTCGCAGCCTCA 60.673 61.111 0.00 0.00 0.00 3.86
779 2269 1.999071 GACTCGACTCGCAGCCTCAT 61.999 60.000 0.00 0.00 0.00 2.90
889 2408 2.231478 CGCTCCCCCAGTGTATACATAG 59.769 54.545 9.18 4.78 0.00 2.23
890 2409 3.507411 GCTCCCCCAGTGTATACATAGA 58.493 50.000 9.18 0.00 0.00 1.98
891 2410 3.258622 GCTCCCCCAGTGTATACATAGAC 59.741 52.174 9.18 0.00 0.00 2.59
892 2411 3.833070 CTCCCCCAGTGTATACATAGACC 59.167 52.174 9.18 0.00 0.00 3.85
893 2412 2.904434 CCCCCAGTGTATACATAGACCC 59.096 54.545 9.18 0.00 0.00 4.46
895 2414 3.578716 CCCCAGTGTATACATAGACCCAG 59.421 52.174 9.18 0.00 0.00 4.45
1111 2647 2.528743 CCGCTGCGCTCCACAATAG 61.529 63.158 18.00 0.00 0.00 1.73
1498 3052 2.829458 GCGTCTCCTACTCCGGCT 60.829 66.667 0.00 0.00 0.00 5.52
1713 3273 4.664677 GTGCTGCGGACGTGGACT 62.665 66.667 0.00 0.00 0.00 3.85
1881 3441 2.545946 GGCTCTTTGATAAGATCACGCC 59.454 50.000 0.00 0.00 39.40 5.68
1913 3473 3.364889 TCGATTATTACTGCCGGTGAG 57.635 47.619 1.90 1.59 0.00 3.51
1997 4361 1.600013 CAGCAGAGCATTCTGATCAGC 59.400 52.381 18.36 7.22 46.66 4.26
2000 4364 1.956297 AGAGCATTCTGATCAGCTGC 58.044 50.000 28.64 28.64 34.77 5.25
2036 4404 7.350110 TGCTTCTGCTTGCATAAAAATAAAC 57.650 32.000 0.00 0.00 40.48 2.01
2037 4405 7.153985 TGCTTCTGCTTGCATAAAAATAAACT 58.846 30.769 0.00 0.00 40.48 2.66
2038 4406 7.656948 TGCTTCTGCTTGCATAAAAATAAACTT 59.343 29.630 0.00 0.00 40.48 2.66
2039 4407 7.953710 GCTTCTGCTTGCATAAAAATAAACTTG 59.046 33.333 0.00 0.00 36.03 3.16
2040 4408 8.885494 TTCTGCTTGCATAAAAATAAACTTGT 57.115 26.923 0.00 0.00 0.00 3.16
2041 4409 8.296799 TCTGCTTGCATAAAAATAAACTTGTG 57.703 30.769 0.00 0.00 0.00 3.33
2042 4410 7.925483 TCTGCTTGCATAAAAATAAACTTGTGT 59.075 29.630 0.00 0.00 0.00 3.72
2043 4411 8.071122 TGCTTGCATAAAAATAAACTTGTGTC 57.929 30.769 0.00 0.00 0.00 3.67
2044 4412 7.708322 TGCTTGCATAAAAATAAACTTGTGTCA 59.292 29.630 0.00 0.00 0.00 3.58
2045 4413 8.216453 GCTTGCATAAAAATAAACTTGTGTCAG 58.784 33.333 0.00 0.00 0.00 3.51
2046 4414 8.586570 TTGCATAAAAATAAACTTGTGTCAGG 57.413 30.769 0.00 0.00 0.00 3.86
2047 4415 7.946207 TGCATAAAAATAAACTTGTGTCAGGA 58.054 30.769 0.00 0.00 0.00 3.86
2049 4417 8.863049 GCATAAAAATAAACTTGTGTCAGGATG 58.137 33.333 0.00 0.00 37.54 3.51
2050 4418 9.357652 CATAAAAATAAACTTGTGTCAGGATGG 57.642 33.333 0.00 0.00 36.16 3.51
2103 4471 6.263516 ACCAGTCATTTCTCATTGTCATTG 57.736 37.500 0.00 0.00 0.00 2.82
2107 4505 6.522165 CAGTCATTTCTCATTGTCATTGAACG 59.478 38.462 0.00 0.00 0.00 3.95
2203 4601 2.666989 CGAAAGCCTCCTTCGTAGC 58.333 57.895 0.00 0.00 0.00 3.58
2265 4663 3.090952 TGCTCCGTTGTTTGGAAAATG 57.909 42.857 0.00 0.00 34.44 2.32
2281 4679 1.067295 AATGGTGGAGCCTGAGTTGA 58.933 50.000 0.00 0.00 38.35 3.18
2282 4680 0.617413 ATGGTGGAGCCTGAGTTGAG 59.383 55.000 0.00 0.00 38.35 3.02
2283 4681 0.764369 TGGTGGAGCCTGAGTTGAGT 60.764 55.000 0.00 0.00 38.35 3.41
2466 4875 8.690840 GTTTTCTTTTCGTCACAATAATGGAAG 58.309 33.333 0.00 0.00 0.00 3.46
2537 4947 4.035441 CCGACCAAAAACCTTTCGAACTTA 59.965 41.667 0.00 0.00 0.00 2.24
2569 4985 1.997606 GCATCAGCAAGTGAAAATGCC 59.002 47.619 0.00 0.00 43.57 4.40
2578 4994 2.026641 AGTGAAAATGCCGATCATGGG 58.973 47.619 0.00 0.00 35.13 4.00
2645 5084 9.886132 ACGACATATATTAAATATTGACCTCCC 57.114 33.333 0.00 0.00 0.00 4.30
2658 5097 6.652205 ATTGACCTCCCTTCTGGTTTATAA 57.348 37.500 0.00 0.00 36.59 0.98
2660 5099 4.080526 TGACCTCCCTTCTGGTTTATAAGC 60.081 45.833 0.00 0.00 36.59 3.09
2662 5101 4.540502 ACCTCCCTTCTGGTTTATAAGCTT 59.459 41.667 3.48 3.48 31.62 3.74
2667 5106 9.190317 CTCCCTTCTGGTTTATAAGCTTAATTT 57.810 33.333 10.85 0.00 34.77 1.82
2668 5107 9.541884 TCCCTTCTGGTTTATAAGCTTAATTTT 57.458 29.630 10.85 0.00 34.77 1.82
2681 5120 9.958180 ATAAGCTTAATTTTTGTTTATGGGCTT 57.042 25.926 10.85 0.00 38.42 4.35
2697 6164 5.379732 TGGGCTTAAATTTTTGGTCGTAG 57.620 39.130 0.00 0.00 0.00 3.51
2708 6175 4.896870 TTTTGGTCGTAGGCGAAAAGAGC 61.897 47.826 0.00 0.00 44.23 4.09
2736 6203 4.741321 ATTTAACCATTGCCCACATCTG 57.259 40.909 0.00 0.00 0.00 2.90
2737 6204 1.473258 TAACCATTGCCCACATCTGC 58.527 50.000 0.00 0.00 0.00 4.26
2739 6206 1.252904 ACCATTGCCCACATCTGCAC 61.253 55.000 0.00 0.00 37.18 4.57
2741 6208 0.968901 CATTGCCCACATCTGCACCT 60.969 55.000 0.00 0.00 37.18 4.00
2742 6209 0.968901 ATTGCCCACATCTGCACCTG 60.969 55.000 0.00 0.00 37.18 4.00
2743 6210 2.753043 GCCCACATCTGCACCTGG 60.753 66.667 0.00 0.00 0.00 4.45
2744 6211 3.080641 CCCACATCTGCACCTGGA 58.919 61.111 0.00 0.00 0.00 3.86
2745 6212 1.377725 CCCACATCTGCACCTGGAC 60.378 63.158 0.00 0.00 0.00 4.02
2746 6213 1.377725 CCACATCTGCACCTGGACC 60.378 63.158 0.00 0.00 0.00 4.46
2748 6215 1.847506 ACATCTGCACCTGGACCCA 60.848 57.895 0.00 0.00 0.00 4.51
2749 6216 1.077930 CATCTGCACCTGGACCCAG 60.078 63.158 9.06 9.06 43.26 4.45
2750 6217 1.229625 ATCTGCACCTGGACCCAGA 60.230 57.895 17.19 9.25 46.30 3.86
2753 6220 1.770110 TGCACCTGGACCCAGAACT 60.770 57.895 17.19 0.00 46.30 3.01
2754 6221 1.003233 GCACCTGGACCCAGAACTC 60.003 63.158 17.19 0.66 46.30 3.01
2755 6222 1.293498 CACCTGGACCCAGAACTCG 59.707 63.158 17.19 3.00 46.30 4.18
2756 6223 1.152312 ACCTGGACCCAGAACTCGT 60.152 57.895 17.19 3.62 46.30 4.18
2757 6224 0.113776 ACCTGGACCCAGAACTCGTA 59.886 55.000 17.19 0.00 46.30 3.43
2758 6225 1.273098 ACCTGGACCCAGAACTCGTAT 60.273 52.381 17.19 0.00 46.30 3.06
2759 6226 1.409427 CCTGGACCCAGAACTCGTATC 59.591 57.143 17.19 0.00 46.30 2.24
2760 6227 2.100197 CTGGACCCAGAACTCGTATCA 58.900 52.381 10.47 0.00 46.30 2.15
2762 6229 3.104512 TGGACCCAGAACTCGTATCATT 58.895 45.455 0.00 0.00 0.00 2.57
2763 6230 3.118775 TGGACCCAGAACTCGTATCATTG 60.119 47.826 0.00 0.00 0.00 2.82
2764 6231 3.458189 GACCCAGAACTCGTATCATTGG 58.542 50.000 0.00 0.00 0.00 3.16
2765 6232 2.213499 CCCAGAACTCGTATCATTGGC 58.787 52.381 0.00 0.00 0.00 4.52
2766 6233 1.860950 CCAGAACTCGTATCATTGGCG 59.139 52.381 0.00 0.00 0.00 5.69
2767 6234 1.860950 CAGAACTCGTATCATTGGCGG 59.139 52.381 0.00 0.00 0.00 6.13
2768 6235 1.754803 AGAACTCGTATCATTGGCGGA 59.245 47.619 0.00 0.00 0.00 5.54
2769 6236 2.128035 GAACTCGTATCATTGGCGGAG 58.872 52.381 0.00 0.00 0.00 4.63
2770 6237 1.399714 ACTCGTATCATTGGCGGAGA 58.600 50.000 0.00 0.00 0.00 3.71
2771 6238 1.338337 ACTCGTATCATTGGCGGAGAG 59.662 52.381 0.00 0.00 0.00 3.20
2772 6239 0.673985 TCGTATCATTGGCGGAGAGG 59.326 55.000 0.00 0.00 0.00 3.69
2773 6240 0.946221 CGTATCATTGGCGGAGAGGC 60.946 60.000 0.00 0.00 46.95 4.70
2774 6241 0.394565 GTATCATTGGCGGAGAGGCT 59.605 55.000 0.00 0.00 46.88 4.58
2775 6242 0.394192 TATCATTGGCGGAGAGGCTG 59.606 55.000 0.00 0.00 46.88 4.85
2776 6243 1.340399 ATCATTGGCGGAGAGGCTGA 61.340 55.000 0.00 0.00 46.88 4.26
2778 6245 3.376935 ATTGGCGGAGAGGCTGACG 62.377 63.158 0.00 0.00 46.88 4.35
2780 6247 4.500116 GGCGGAGAGGCTGACGAC 62.500 72.222 0.00 0.00 42.90 4.34
2782 6249 4.838486 CGGAGAGGCTGACGACGC 62.838 72.222 0.00 0.00 0.00 5.19
2783 6250 4.838486 GGAGAGGCTGACGACGCG 62.838 72.222 3.53 3.53 0.00 6.01
2784 6251 3.800863 GAGAGGCTGACGACGCGA 61.801 66.667 15.93 0.00 0.00 5.87
2785 6252 3.726631 GAGAGGCTGACGACGCGAG 62.727 68.421 15.93 9.24 0.00 5.03
2812 6279 2.672651 TGACCAGCCATTGCACCG 60.673 61.111 0.00 0.00 41.13 4.94
2813 6280 3.443045 GACCAGCCATTGCACCGG 61.443 66.667 0.00 0.00 41.13 5.28
2819 6286 2.676121 CCATTGCACCGGCCTGAA 60.676 61.111 0.00 0.00 40.13 3.02
2820 6287 2.703798 CCATTGCACCGGCCTGAAG 61.704 63.158 0.00 0.00 40.13 3.02
2821 6288 2.361610 ATTGCACCGGCCTGAAGG 60.362 61.111 0.00 0.00 40.13 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.219646 GCATTGCACCAAACCAACAG 58.780 50.000 3.15 0.00 0.00 3.16
22 23 0.977108 ATCCGGGGTTGCATTGCATT 60.977 50.000 12.95 0.00 38.76 3.56
23 24 0.106268 TATCCGGGGTTGCATTGCAT 60.106 50.000 12.95 0.00 38.76 3.96
59 60 4.200092 TGATGGTCGATATATAGCTCGCT 58.800 43.478 0.00 0.00 34.94 4.93
67 68 9.961264 ATATACGTAGGATGATGGTCGATATAT 57.039 33.333 0.08 0.00 0.00 0.86
72 73 5.819379 GGTATATACGTAGGATGATGGTCGA 59.181 44.000 6.79 0.00 0.00 4.20
76 77 6.238786 GCTCTGGTATATACGTAGGATGATGG 60.239 46.154 6.79 0.00 0.00 3.51
91 92 8.889717 GCTACAATTGTTTTTAGCTCTGGTATA 58.110 33.333 17.78 0.00 37.87 1.47
92 93 7.393234 TGCTACAATTGTTTTTAGCTCTGGTAT 59.607 33.333 24.31 0.00 40.32 2.73
93 94 6.712998 TGCTACAATTGTTTTTAGCTCTGGTA 59.287 34.615 24.31 7.30 40.32 3.25
94 95 5.534654 TGCTACAATTGTTTTTAGCTCTGGT 59.465 36.000 24.31 0.00 40.32 4.00
95 96 6.012658 TGCTACAATTGTTTTTAGCTCTGG 57.987 37.500 24.31 0.00 40.32 3.86
96 97 6.467047 CGATGCTACAATTGTTTTTAGCTCTG 59.533 38.462 24.31 13.85 40.32 3.35
97 98 6.149474 ACGATGCTACAATTGTTTTTAGCTCT 59.851 34.615 24.31 15.37 40.32 4.09
98 99 6.314784 ACGATGCTACAATTGTTTTTAGCTC 58.685 36.000 24.31 18.75 40.32 4.09
99 100 6.254281 ACGATGCTACAATTGTTTTTAGCT 57.746 33.333 24.31 14.13 40.32 3.32
100 101 6.927933 AACGATGCTACAATTGTTTTTAGC 57.072 33.333 17.78 18.91 40.16 3.09
116 117 9.670180 GCTACAATTGTTTTTATTAAACGATGC 57.330 29.630 17.78 0.00 35.16 3.91
120 121 9.459276 GCATGCTACAATTGTTTTTATTAAACG 57.541 29.630 17.78 0.00 33.05 3.60
121 122 9.459276 CGCATGCTACAATTGTTTTTATTAAAC 57.541 29.630 17.78 0.00 0.00 2.01
124 125 7.810282 ACACGCATGCTACAATTGTTTTTATTA 59.190 29.630 17.78 0.00 0.00 0.98
125 126 6.644592 ACACGCATGCTACAATTGTTTTTATT 59.355 30.769 17.78 0.00 0.00 1.40
126 127 6.089283 CACACGCATGCTACAATTGTTTTTAT 59.911 34.615 17.78 4.14 0.00 1.40
177 200 2.716424 CAAAAGGGGAGGGCCATCTATA 59.284 50.000 18.35 0.00 35.15 1.31
202 256 2.733218 TGCAAGTCTCGCGTTCCG 60.733 61.111 5.77 0.00 38.61 4.30
256 316 3.814283 CCACCCTGACTACGACTAGATAC 59.186 52.174 0.00 0.00 0.00 2.24
296 364 3.379688 GCACCAGATGAGGATTTTCTTCC 59.620 47.826 0.00 0.00 35.90 3.46
372 651 0.314302 CCGGTCTCGTCTTGTCTTGT 59.686 55.000 0.00 0.00 33.95 3.16
386 665 0.394625 ACTCTACTCTGCTCCCGGTC 60.395 60.000 0.00 0.00 0.00 4.79
467 765 1.278238 CATTACTCGCGGTTCCAGAC 58.722 55.000 6.13 0.00 0.00 3.51
486 784 1.694696 AGACCTGAATATTCGGAGGGC 59.305 52.381 23.36 19.80 35.56 5.19
537 835 3.745163 ACACGGGTTAACATCCGAGTTTT 60.745 43.478 24.39 4.43 45.24 2.43
538 836 2.224354 ACACGGGTTAACATCCGAGTTT 60.224 45.455 24.39 4.74 45.24 2.66
539 837 1.345415 ACACGGGTTAACATCCGAGTT 59.655 47.619 24.39 9.27 45.24 3.01
544 842 3.816523 TCAGAAAACACGGGTTAACATCC 59.183 43.478 1.98 0.00 35.82 3.51
545 843 4.609783 CGTCAGAAAACACGGGTTAACATC 60.610 45.833 1.98 0.13 35.82 3.06
546 844 3.249080 CGTCAGAAAACACGGGTTAACAT 59.751 43.478 1.98 0.00 35.82 2.71
547 845 2.608546 CGTCAGAAAACACGGGTTAACA 59.391 45.455 1.98 0.00 35.82 2.41
548 846 2.600556 GCGTCAGAAAACACGGGTTAAC 60.601 50.000 1.98 0.50 35.82 2.01
549 847 1.598601 GCGTCAGAAAACACGGGTTAA 59.401 47.619 1.98 0.00 35.82 2.01
550 848 1.202557 AGCGTCAGAAAACACGGGTTA 60.203 47.619 1.98 0.00 35.82 2.85
551 849 0.463116 AGCGTCAGAAAACACGGGTT 60.463 50.000 0.00 0.00 39.43 4.11
552 850 0.463116 AAGCGTCAGAAAACACGGGT 60.463 50.000 0.00 0.00 36.50 5.28
553 851 0.661020 AAAGCGTCAGAAAACACGGG 59.339 50.000 0.00 0.00 36.50 5.28
554 852 1.597663 AGAAAGCGTCAGAAAACACGG 59.402 47.619 0.00 0.00 36.50 4.94
561 859 1.067974 TCGTGGAAGAAAGCGTCAGAA 59.932 47.619 0.00 0.00 0.00 3.02
639 2110 4.314740 AGCATAAACTCAACCGCAAAAA 57.685 36.364 0.00 0.00 0.00 1.94
640 2111 4.614993 GCTAGCATAAACTCAACCGCAAAA 60.615 41.667 10.63 0.00 0.00 2.44
641 2112 3.119990 GCTAGCATAAACTCAACCGCAAA 60.120 43.478 10.63 0.00 0.00 3.68
642 2113 2.418628 GCTAGCATAAACTCAACCGCAA 59.581 45.455 10.63 0.00 0.00 4.85
643 2114 2.006888 GCTAGCATAAACTCAACCGCA 58.993 47.619 10.63 0.00 0.00 5.69
644 2115 2.280628 AGCTAGCATAAACTCAACCGC 58.719 47.619 18.83 0.00 0.00 5.68
645 2116 6.604735 ATTAAGCTAGCATAAACTCAACCG 57.395 37.500 18.83 0.00 0.00 4.44
649 2120 9.758651 TCGATTAATTAAGCTAGCATAAACTCA 57.241 29.630 18.83 2.48 0.00 3.41
657 2128 8.506437 CCATTTGATCGATTAATTAAGCTAGCA 58.494 33.333 18.83 6.84 0.00 3.49
658 2129 8.507249 ACCATTTGATCGATTAATTAAGCTAGC 58.493 33.333 6.62 6.62 0.00 3.42
659 2130 9.817365 CACCATTTGATCGATTAATTAAGCTAG 57.183 33.333 11.41 0.00 0.00 3.42
660 2131 8.289618 GCACCATTTGATCGATTAATTAAGCTA 58.710 33.333 11.41 1.11 0.00 3.32
661 2132 7.141363 GCACCATTTGATCGATTAATTAAGCT 58.859 34.615 11.41 0.00 0.00 3.74
662 2133 6.917477 TGCACCATTTGATCGATTAATTAAGC 59.083 34.615 3.18 3.31 0.00 3.09
663 2134 8.854979 TTGCACCATTTGATCGATTAATTAAG 57.145 30.769 3.18 0.00 0.00 1.85
664 2135 8.465999 ACTTGCACCATTTGATCGATTAATTAA 58.534 29.630 3.18 0.00 0.00 1.40
665 2136 7.995289 ACTTGCACCATTTGATCGATTAATTA 58.005 30.769 3.18 0.00 0.00 1.40
666 2137 6.866480 ACTTGCACCATTTGATCGATTAATT 58.134 32.000 3.18 0.00 0.00 1.40
721 2196 4.967575 TGATTTCGTTTCTTTTTCTCGTGC 59.032 37.500 0.00 0.00 0.00 5.34
775 2265 2.348059 GCTGCTTTTGAGACGAGATGAG 59.652 50.000 0.00 0.00 0.00 2.90
776 2266 2.289010 TGCTGCTTTTGAGACGAGATGA 60.289 45.455 0.00 0.00 0.00 2.92
777 2267 2.071540 TGCTGCTTTTGAGACGAGATG 58.928 47.619 0.00 0.00 0.00 2.90
778 2268 2.072298 GTGCTGCTTTTGAGACGAGAT 58.928 47.619 0.00 0.00 0.00 2.75
779 2269 1.502231 GTGCTGCTTTTGAGACGAGA 58.498 50.000 0.00 0.00 0.00 4.04
874 2384 3.006967 GCTGGGTCTATGTATACACTGGG 59.993 52.174 7.96 0.00 0.00 4.45
880 2392 2.028020 GCTGGGCTGGGTCTATGTATAC 60.028 54.545 0.00 0.00 0.00 1.47
889 2408 3.397613 CTGCTAGCTGGGCTGGGTC 62.398 68.421 17.23 0.00 40.10 4.46
890 2409 3.406200 CTGCTAGCTGGGCTGGGT 61.406 66.667 17.23 0.00 40.10 4.51
891 2410 4.871910 GCTGCTAGCTGGGCTGGG 62.872 72.222 21.46 8.76 40.10 4.45
1539 3093 3.264866 GAGCGTCACGTTCCTCGGT 62.265 63.158 2.00 0.00 44.69 4.69
1881 3441 6.857964 GCAGTAATAATCGAATTGATTGGGTG 59.142 38.462 5.99 0.00 46.72 4.61
1913 3473 4.273480 CCAGATCACACGAATTAATCCACC 59.727 45.833 0.00 0.00 0.00 4.61
1948 3545 2.761786 ACTATTTGCATGCATCCCCT 57.238 45.000 23.37 7.18 0.00 4.79
2019 4387 8.071122 TGACACAAGTTTATTTTTATGCAAGC 57.929 30.769 0.00 0.00 0.00 4.01
2036 4404 2.768253 TGTAGCCATCCTGACACAAG 57.232 50.000 0.00 0.00 0.00 3.16
2037 4405 2.305635 ACATGTAGCCATCCTGACACAA 59.694 45.455 0.00 0.00 0.00 3.33
2038 4406 1.908619 ACATGTAGCCATCCTGACACA 59.091 47.619 0.00 0.00 0.00 3.72
2039 4407 2.555199 GACATGTAGCCATCCTGACAC 58.445 52.381 0.00 0.00 0.00 3.67
2040 4408 1.136891 CGACATGTAGCCATCCTGACA 59.863 52.381 0.00 0.00 0.00 3.58
2041 4409 1.409064 TCGACATGTAGCCATCCTGAC 59.591 52.381 0.00 0.00 0.00 3.51
2042 4410 1.775385 TCGACATGTAGCCATCCTGA 58.225 50.000 0.00 0.00 0.00 3.86
2043 4411 2.036346 TCATCGACATGTAGCCATCCTG 59.964 50.000 0.00 0.00 0.00 3.86
2044 4412 2.319844 TCATCGACATGTAGCCATCCT 58.680 47.619 0.00 0.00 0.00 3.24
2045 4413 2.820059 TCATCGACATGTAGCCATCC 57.180 50.000 0.00 0.00 0.00 3.51
2046 4414 3.681897 GGATTCATCGACATGTAGCCATC 59.318 47.826 0.00 0.00 36.22 3.51
2047 4415 3.557898 GGGATTCATCGACATGTAGCCAT 60.558 47.826 0.00 0.00 37.54 4.40
2049 4417 2.037772 AGGGATTCATCGACATGTAGCC 59.962 50.000 0.00 0.00 35.62 3.93
2050 4418 3.062763 CAGGGATTCATCGACATGTAGC 58.937 50.000 0.00 0.00 0.00 3.58
2091 4459 5.063438 ACCGTAATCGTTCAATGACAATGAG 59.937 40.000 0.00 0.00 35.01 2.90
2103 4471 0.392060 AGCCCCAACCGTAATCGTTC 60.392 55.000 0.00 0.00 35.01 3.95
2107 4505 0.746923 GGACAGCCCCAACCGTAATC 60.747 60.000 0.00 0.00 0.00 1.75
2201 4599 1.414919 TGGTGAGGTTTAAGTCGTGCT 59.585 47.619 0.00 0.00 0.00 4.40
2202 4600 1.873698 TGGTGAGGTTTAAGTCGTGC 58.126 50.000 0.00 0.00 0.00 5.34
2203 4601 3.199677 TGTTGGTGAGGTTTAAGTCGTG 58.800 45.455 0.00 0.00 0.00 4.35
2265 4663 0.398318 AACTCAACTCAGGCTCCACC 59.602 55.000 0.00 0.00 39.61 4.61
2331 4729 7.555087 ACTTTGAGAAGAAGTCAGATGATAGG 58.445 38.462 0.00 0.00 36.69 2.57
2466 4875 3.249080 CCCGAGTTCGAGAGAGTATTCTC 59.751 52.174 7.14 7.14 43.69 2.87
2516 4926 5.882553 TGTAAGTTCGAAAGGTTTTTGGTC 58.117 37.500 0.00 0.00 0.00 4.02
2518 4928 4.738252 GCTGTAAGTTCGAAAGGTTTTTGG 59.262 41.667 0.00 0.00 35.30 3.28
2520 4930 5.578776 CAGCTGTAAGTTCGAAAGGTTTTT 58.421 37.500 5.25 0.00 35.30 1.94
2569 4985 1.595382 GGCTTCGTCCCCATGATCG 60.595 63.158 0.00 0.00 0.00 3.69
2578 4994 2.356069 GAGATTTTGGATGGCTTCGTCC 59.644 50.000 0.00 0.00 44.82 4.79
2641 5080 8.753497 AATTAAGCTTATAAACCAGAAGGGAG 57.247 34.615 7.08 0.00 41.15 4.30
2658 5097 9.785982 TTTAAGCCCATAAACAAAAATTAAGCT 57.214 25.926 0.00 0.00 0.00 3.74
2667 5106 8.753497 ACCAAAAATTTAAGCCCATAAACAAA 57.247 26.923 0.00 0.00 0.00 2.83
2668 5107 7.171678 CGACCAAAAATTTAAGCCCATAAACAA 59.828 33.333 0.00 0.00 0.00 2.83
2669 5108 6.647067 CGACCAAAAATTTAAGCCCATAAACA 59.353 34.615 0.00 0.00 0.00 2.83
2670 5109 6.647481 ACGACCAAAAATTTAAGCCCATAAAC 59.353 34.615 0.00 0.00 0.00 2.01
2671 5110 6.760291 ACGACCAAAAATTTAAGCCCATAAA 58.240 32.000 0.00 0.00 0.00 1.40
2673 5112 5.986501 ACGACCAAAAATTTAAGCCCATA 57.013 34.783 0.00 0.00 0.00 2.74
2674 5113 4.882842 ACGACCAAAAATTTAAGCCCAT 57.117 36.364 0.00 0.00 0.00 4.00
2675 5114 4.218852 CCTACGACCAAAAATTTAAGCCCA 59.781 41.667 0.00 0.00 0.00 5.36
2676 5115 4.740268 CCTACGACCAAAAATTTAAGCCC 58.260 43.478 0.00 0.00 0.00 5.19
2677 5116 4.171005 GCCTACGACCAAAAATTTAAGCC 58.829 43.478 0.00 0.00 0.00 4.35
2678 5117 3.849708 CGCCTACGACCAAAAATTTAAGC 59.150 43.478 0.00 0.00 43.93 3.09
2679 5118 5.285798 TCGCCTACGACCAAAAATTTAAG 57.714 39.130 0.00 0.00 45.12 1.85
2705 6172 2.825086 ATGGTTAAATTGCGACGCTC 57.175 45.000 22.08 2.87 0.00 5.03
2716 6183 2.233431 GCAGATGTGGGCAATGGTTAAA 59.767 45.455 0.00 0.00 0.00 1.52
2734 6201 1.302832 GTTCTGGGTCCAGGTGCAG 60.303 63.158 16.15 2.37 43.75 4.41
2736 6203 1.003233 GAGTTCTGGGTCCAGGTGC 60.003 63.158 16.15 7.50 43.75 5.01
2737 6204 1.293498 CGAGTTCTGGGTCCAGGTG 59.707 63.158 16.15 0.11 43.75 4.00
2739 6206 1.409427 GATACGAGTTCTGGGTCCAGG 59.591 57.143 16.15 3.35 43.75 4.45
2741 6208 2.225382 TGATACGAGTTCTGGGTCCA 57.775 50.000 0.00 0.00 0.00 4.02
2742 6209 3.458189 CAATGATACGAGTTCTGGGTCC 58.542 50.000 0.00 0.00 0.00 4.46
2743 6210 3.458189 CCAATGATACGAGTTCTGGGTC 58.542 50.000 0.00 0.00 0.00 4.46
2744 6211 2.420129 GCCAATGATACGAGTTCTGGGT 60.420 50.000 0.00 0.00 0.00 4.51
2745 6212 2.213499 GCCAATGATACGAGTTCTGGG 58.787 52.381 0.00 0.00 0.00 4.45
2746 6213 1.860950 CGCCAATGATACGAGTTCTGG 59.139 52.381 0.00 0.00 0.00 3.86
2748 6215 1.754803 TCCGCCAATGATACGAGTTCT 59.245 47.619 0.00 0.00 0.00 3.01
2749 6216 2.128035 CTCCGCCAATGATACGAGTTC 58.872 52.381 0.00 0.00 0.00 3.01
2750 6217 1.754803 TCTCCGCCAATGATACGAGTT 59.245 47.619 0.00 0.00 0.00 3.01
2753 6220 0.673985 CCTCTCCGCCAATGATACGA 59.326 55.000 0.00 0.00 0.00 3.43
2754 6221 0.946221 GCCTCTCCGCCAATGATACG 60.946 60.000 0.00 0.00 0.00 3.06
2755 6222 0.394565 AGCCTCTCCGCCAATGATAC 59.605 55.000 0.00 0.00 0.00 2.24
2756 6223 0.394192 CAGCCTCTCCGCCAATGATA 59.606 55.000 0.00 0.00 0.00 2.15
2757 6224 1.147824 CAGCCTCTCCGCCAATGAT 59.852 57.895 0.00 0.00 0.00 2.45
2758 6225 1.989508 TCAGCCTCTCCGCCAATGA 60.990 57.895 0.00 0.00 0.00 2.57
2759 6226 1.817099 GTCAGCCTCTCCGCCAATG 60.817 63.158 0.00 0.00 0.00 2.82
2760 6227 2.586792 GTCAGCCTCTCCGCCAAT 59.413 61.111 0.00 0.00 0.00 3.16
2763 6230 4.500116 GTCGTCAGCCTCTCCGCC 62.500 72.222 0.00 0.00 0.00 6.13
2764 6231 4.838486 CGTCGTCAGCCTCTCCGC 62.838 72.222 0.00 0.00 0.00 5.54
2765 6232 4.838486 GCGTCGTCAGCCTCTCCG 62.838 72.222 0.00 0.00 0.00 4.63
2766 6233 4.838486 CGCGTCGTCAGCCTCTCC 62.838 72.222 0.00 0.00 0.00 3.71
2767 6234 3.726631 CTCGCGTCGTCAGCCTCTC 62.727 68.421 5.77 0.00 0.00 3.20
2768 6235 3.805307 CTCGCGTCGTCAGCCTCT 61.805 66.667 5.77 0.00 0.00 3.69
2769 6236 4.838486 CCTCGCGTCGTCAGCCTC 62.838 72.222 5.77 0.00 0.00 4.70
2773 6240 4.778415 CCCACCTCGCGTCGTCAG 62.778 72.222 5.77 0.00 0.00 3.51
2795 6262 2.672651 CGGTGCAATGGCTGGTCA 60.673 61.111 0.00 0.00 41.91 4.02
2802 6269 2.676121 TTCAGGCCGGTGCAATGG 60.676 61.111 1.90 1.07 40.13 3.16
2803 6270 2.703798 CCTTCAGGCCGGTGCAATG 61.704 63.158 1.90 0.00 40.13 2.82
2804 6271 2.361610 CCTTCAGGCCGGTGCAAT 60.362 61.111 1.90 0.00 40.13 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.