Multiple sequence alignment - TraesCS4D01G124000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G124000 chr4D 100.000 6417 0 0 1 6417 108632156 108625740 0.000000e+00 11851.0
1 TraesCS4D01G124000 chr4D 94.668 4782 168 42 1692 6417 280177914 280182664 0.000000e+00 7337.0
2 TraesCS4D01G124000 chr4D 96.379 718 25 1 979 1696 280176011 280176727 0.000000e+00 1181.0
3 TraesCS4D01G124000 chr4D 91.603 262 20 2 3128 3388 114578957 114579217 1.790000e-95 361.0
4 TraesCS4D01G124000 chr4D 100.000 123 0 0 6634 6756 108625523 108625401 1.900000e-55 228.0
5 TraesCS4D01G124000 chr4D 89.344 122 11 2 6297 6417 256642436 256642556 1.170000e-32 152.0
6 TraesCS4D01G124000 chr4A 97.525 4000 76 10 1851 5832 467682575 467686569 0.000000e+00 6817.0
7 TraesCS4D01G124000 chr4A 98.618 868 10 1 985 1850 467681551 467682418 0.000000e+00 1535.0
8 TraesCS4D01G124000 chr4A 89.630 405 38 2 6015 6417 467748926 467749328 4.670000e-141 512.0
9 TraesCS4D01G124000 chr4A 83.232 328 33 12 3585 3897 363098201 363097881 1.430000e-71 281.0
10 TraesCS4D01G124000 chr4A 86.082 194 13 7 5833 6023 467686602 467686784 5.350000e-46 196.0
11 TraesCS4D01G124000 chr4A 90.598 117 11 0 3474 3590 590945702 590945818 9.070000e-34 156.0
12 TraesCS4D01G124000 chr4A 98.438 64 1 0 777 840 467668257 467668320 5.540000e-21 113.0
13 TraesCS4D01G124000 chr4A 85.714 98 10 2 6634 6731 467749368 467749461 4.310000e-17 100.0
14 TraesCS4D01G124000 chr6B 93.730 2536 97 29 3592 6076 69444503 69441979 0.000000e+00 3746.0
15 TraesCS4D01G124000 chr6B 92.569 1238 28 17 1006 2191 69446910 69445685 0.000000e+00 1718.0
16 TraesCS4D01G124000 chr6B 96.416 586 12 5 2188 2764 69445529 69444944 0.000000e+00 957.0
17 TraesCS4D01G124000 chr6B 97.696 434 8 1 2817 3248 69444944 69444511 0.000000e+00 745.0
18 TraesCS4D01G124000 chr6B 90.385 104 10 0 6634 6737 319538671 319538774 3.290000e-28 137.0
19 TraesCS4D01G124000 chr6B 87.619 105 5 4 6634 6737 69441676 69441579 1.540000e-21 115.0
20 TraesCS4D01G124000 chr5D 83.394 825 90 38 38 839 390128277 390129077 0.000000e+00 721.0
21 TraesCS4D01G124000 chr5D 88.372 258 27 2 3913 4168 201664577 201664321 2.370000e-79 307.0
22 TraesCS4D01G124000 chr5D 88.820 161 15 2 4405 4563 215301981 215302140 1.920000e-45 195.0
23 TraesCS4D01G124000 chr5D 93.519 108 7 0 3479 3586 371860609 371860716 1.950000e-35 161.0
24 TraesCS4D01G124000 chr3D 85.473 592 69 17 254 834 607900303 607900888 9.690000e-168 601.0
25 TraesCS4D01G124000 chr3D 87.184 515 52 14 254 759 540884512 540885021 2.110000e-159 573.0
26 TraesCS4D01G124000 chr3D 91.453 117 9 1 3480 3595 379826241 379826357 7.010000e-35 159.0
27 TraesCS4D01G124000 chr3D 92.308 52 3 1 642 692 467975501 467975552 9.400000e-09 73.1
28 TraesCS4D01G124000 chr3D 86.364 66 7 2 627 691 80631796 80631732 3.380000e-08 71.3
29 TraesCS4D01G124000 chr3D 92.157 51 3 1 642 692 468435063 468435112 3.380000e-08 71.3
30 TraesCS4D01G124000 chr7B 86.965 514 50 17 255 759 587919295 587918790 4.570000e-156 562.0
31 TraesCS4D01G124000 chr7B 93.208 265 16 2 3127 3390 173229520 173229783 8.220000e-104 388.0
32 TraesCS4D01G124000 chr5B 87.305 449 46 11 322 763 685310378 685309934 2.810000e-138 503.0
33 TraesCS4D01G124000 chr5B 83.041 342 36 11 3585 3911 615900583 615900249 2.380000e-74 291.0
34 TraesCS4D01G124000 chr5B 81.250 320 31 14 3591 3897 170588100 170587797 1.470000e-56 231.0
35 TraesCS4D01G124000 chr3A 92.045 264 17 4 3128 3389 664692847 664693108 1.070000e-97 368.0
36 TraesCS4D01G124000 chr3A 84.802 329 32 8 3583 3897 264032029 264031705 1.410000e-81 315.0
37 TraesCS4D01G124000 chr3A 88.073 218 22 4 254 469 126087833 126088048 8.690000e-64 255.0
38 TraesCS4D01G124000 chr3A 79.310 261 34 13 3583 3828 566867712 566867967 1.510000e-36 165.0
39 TraesCS4D01G124000 chr3A 91.453 117 9 1 3480 3595 503822393 503822277 7.010000e-35 159.0
40 TraesCS4D01G124000 chr3A 87.879 66 6 2 627 691 93329709 93329773 7.270000e-10 76.8
41 TraesCS4D01G124000 chr2D 91.985 262 15 6 3127 3385 74146852 74147110 4.980000e-96 363.0
42 TraesCS4D01G124000 chr2D 88.077 260 20 8 3911 4165 633320460 633320713 1.420000e-76 298.0
43 TraesCS4D01G124000 chr2D 87.549 257 29 2 3911 4165 177460083 177459828 1.840000e-75 294.0
44 TraesCS4D01G124000 chr2D 84.906 106 9 7 593 692 645167037 645167141 4.310000e-17 100.0
45 TraesCS4D01G124000 chr2D 86.364 66 7 2 627 691 628603582 628603646 3.380000e-08 71.3
46 TraesCS4D01G124000 chr2D 84.848 66 8 2 627 691 634656711 634656647 1.570000e-06 65.8
47 TraesCS4D01G124000 chr5A 91.321 265 21 2 3127 3390 535518763 535518500 1.790000e-95 361.0
48 TraesCS4D01G124000 chr5A 91.255 263 21 2 3128 3389 52281156 52281417 2.320000e-94 357.0
49 TraesCS4D01G124000 chr7A 91.288 264 19 3 3127 3389 515737512 515737772 2.320000e-94 357.0
50 TraesCS4D01G124000 chr7A 90.196 153 15 0 4408 4560 462978739 462978587 4.130000e-47 200.0
51 TraesCS4D01G124000 chr7A 92.308 117 8 1 3479 3594 180660955 180661071 1.510000e-36 165.0
52 TraesCS4D01G124000 chr7A 82.166 157 18 9 536 687 716252445 716252294 7.110000e-25 126.0
53 TraesCS4D01G124000 chr7A 85.714 126 11 7 568 687 716253783 716253659 7.110000e-25 126.0
54 TraesCS4D01G124000 chr2B 89.105 257 24 3 3911 4165 234367961 234367707 3.930000e-82 316.0
55 TraesCS4D01G124000 chr2B 82.379 227 28 11 610 827 542351386 542351163 3.220000e-43 187.0
56 TraesCS4D01G124000 chr1B 84.545 330 29 15 3583 3897 551182155 551181833 2.370000e-79 307.0
57 TraesCS4D01G124000 chr1B 88.073 218 22 4 254 469 581106257 581106042 8.690000e-64 255.0
58 TraesCS4D01G124000 chr3B 84.195 329 32 10 3583 3897 299132981 299133303 1.100000e-77 302.0
59 TraesCS4D01G124000 chr3B 88.532 218 21 4 254 469 733253730 733253515 1.870000e-65 261.0
60 TraesCS4D01G124000 chr3B 82.500 240 25 16 610 837 733253520 733253286 1.920000e-45 195.0
61 TraesCS4D01G124000 chr3B 81.377 247 32 13 601 837 15047737 15047979 8.940000e-44 189.0
62 TraesCS4D01G124000 chr3B 91.453 117 9 1 3480 3595 495475591 495475475 7.010000e-35 159.0
63 TraesCS4D01G124000 chr3B 87.500 104 13 0 6634 6737 433399032 433399135 3.310000e-23 121.0
64 TraesCS4D01G124000 chr3B 85.714 77 9 2 433 507 730557625 730557549 5.620000e-11 80.5
65 TraesCS4D01G124000 chr2A 87.984 258 27 3 3911 4165 190317508 190317252 1.100000e-77 302.0
66 TraesCS4D01G124000 chr2A 90.196 153 13 1 4408 4560 329688022 329688172 1.490000e-46 198.0
67 TraesCS4D01G124000 chr6D 86.770 257 31 2 3911 4165 175718544 175718289 3.990000e-72 283.0
68 TraesCS4D01G124000 chr6D 90.411 146 14 0 4415 4560 386931497 386931642 6.910000e-45 193.0
69 TraesCS4D01G124000 chr6D 92.727 110 8 0 3477 3586 302113641 302113750 7.010000e-35 159.0
70 TraesCS4D01G124000 chr6D 87.755 98 11 1 6634 6731 361546182 361546278 5.540000e-21 113.0
71 TraesCS4D01G124000 chr1A 83.284 335 29 16 3583 3897 505474012 505473685 3.990000e-72 283.0
72 TraesCS4D01G124000 chr1D 82.972 323 36 13 3583 3897 409502830 409502519 2.400000e-69 274.0
73 TraesCS4D01G124000 chr7D 88.532 218 21 4 254 469 1141441 1141226 1.870000e-65 261.0
74 TraesCS4D01G124000 chr7D 84.685 222 21 13 610 821 1141231 1141013 6.870000e-50 209.0
75 TraesCS4D01G124000 chr7D 89.809 157 15 1 4411 4566 379326469 379326313 4.130000e-47 200.0
76 TraesCS4D01G124000 chr7D 89.474 152 16 0 4410 4561 156796841 156796992 6.910000e-45 193.0
77 TraesCS4D01G124000 chr7D 100.000 28 0 0 785 812 585588449 585588422 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G124000 chr4D 108625401 108632156 6755 True 6039.500000 11851 100.0000 1 6756 2 chr4D.!!$R1 6755
1 TraesCS4D01G124000 chr4D 280176011 280182664 6653 False 4259.000000 7337 95.5235 979 6417 2 chr4D.!!$F3 5438
2 TraesCS4D01G124000 chr4A 467681551 467686784 5233 False 2849.333333 6817 94.0750 985 6023 3 chr4A.!!$F3 5038
3 TraesCS4D01G124000 chr4A 467748926 467749461 535 False 306.000000 512 87.6720 6015 6731 2 chr4A.!!$F4 716
4 TraesCS4D01G124000 chr6B 69441579 69446910 5331 True 1456.200000 3746 93.6060 1006 6737 5 chr6B.!!$R1 5731
5 TraesCS4D01G124000 chr5D 390128277 390129077 800 False 721.000000 721 83.3940 38 839 1 chr5D.!!$F3 801
6 TraesCS4D01G124000 chr3D 607900303 607900888 585 False 601.000000 601 85.4730 254 834 1 chr3D.!!$F5 580
7 TraesCS4D01G124000 chr3D 540884512 540885021 509 False 573.000000 573 87.1840 254 759 1 chr3D.!!$F4 505
8 TraesCS4D01G124000 chr7B 587918790 587919295 505 True 562.000000 562 86.9650 255 759 1 chr7B.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.037605 CCTAGGTCGCGACAAAACCT 60.038 55.0 37.26 27.79 45.30 3.50 F
74 75 0.106519 AGCCAGCAGTCAAAGGTTGT 60.107 50.0 0.00 0.00 0.00 3.32 F
231 232 0.179076 ATGCCAATCGATGAGTGCGA 60.179 50.0 0.00 0.00 42.48 5.10 F
235 236 0.299895 CAATCGATGAGTGCGAGCAC 59.700 55.0 19.45 19.45 46.50 4.40 F
864 886 0.379316 GACGTGCCGGAGTTTGTTTT 59.621 50.0 5.05 0.00 0.00 2.43 F
2555 4142 0.035725 GAAAGGGGGTTAGTCCGGTG 60.036 60.0 0.00 0.00 37.00 4.94 F
3660 5255 6.513180 TCACAAAGCCTATAAATAGAGGTCG 58.487 40.0 3.27 0.00 37.04 4.79 F
3898 5505 0.311790 CAACCGTGTGCTGCTTCAAT 59.688 50.0 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 3010 5.011090 ACTAGCATGTTTAGATCGCTTGA 57.989 39.130 11.73 0.0 34.18 3.02 R
1868 3266 6.474427 TCGTCAAGTAACTGTGAAAACTGTAG 59.526 38.462 0.00 0.0 0.00 2.74 R
2153 3575 6.089249 ACCTCAAACATTTCTGGATTCAAC 57.911 37.500 0.00 0.0 0.00 3.18 R
2270 3851 9.342308 CACATGTGTAACTCCCTATGAAAATAT 57.658 33.333 18.03 0.0 38.04 1.28 R
2563 4150 0.875059 CACAGCGGAAGACTTTTCCC 59.125 55.000 0.00 0.0 35.17 3.97 R
3773 5380 3.129638 GCTCTAGAGGTGAATATAGGCCG 59.870 52.174 21.23 0.0 0.00 6.13 R
5664 7291 1.522668 CAAATTCAGCCCGTGAGTCA 58.477 50.000 0.00 0.0 36.21 3.41 R
5918 7577 0.672401 CCGCTTGCTTCCGGTTTAGA 60.672 55.000 0.00 0.0 39.67 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.122563 GAGAATCGAACCTAGGTCGC 57.877 55.000 16.64 9.77 0.00 5.19
25 26 0.381089 AGAATCGAACCTAGGTCGCG 59.619 55.000 23.80 23.80 0.00 5.87
26 27 0.379669 GAATCGAACCTAGGTCGCGA 59.620 55.000 30.18 30.18 38.48 5.87
27 28 0.100146 AATCGAACCTAGGTCGCGAC 59.900 55.000 30.48 30.67 37.54 5.19
28 29 1.028330 ATCGAACCTAGGTCGCGACA 61.028 55.000 37.26 19.52 37.54 4.35
29 30 1.210931 CGAACCTAGGTCGCGACAA 59.789 57.895 37.26 24.46 0.00 3.18
30 31 0.387622 CGAACCTAGGTCGCGACAAA 60.388 55.000 37.26 24.11 0.00 2.83
31 32 1.787012 GAACCTAGGTCGCGACAAAA 58.213 50.000 37.26 21.70 0.00 2.44
32 33 1.458445 GAACCTAGGTCGCGACAAAAC 59.542 52.381 37.26 21.64 0.00 2.43
33 34 0.320160 ACCTAGGTCGCGACAAAACC 60.320 55.000 37.26 22.49 0.00 3.27
34 35 0.037605 CCTAGGTCGCGACAAAACCT 60.038 55.000 37.26 27.79 45.30 3.50
35 36 1.347320 CTAGGTCGCGACAAAACCTC 58.653 55.000 37.26 19.85 42.41 3.85
36 37 0.675083 TAGGTCGCGACAAAACCTCA 59.325 50.000 37.26 13.59 42.41 3.86
37 38 0.878961 AGGTCGCGACAAAACCTCAC 60.879 55.000 37.26 18.43 39.17 3.51
38 39 1.200839 GTCGCGACAAAACCTCACG 59.799 57.895 33.09 0.00 0.00 4.35
39 40 2.127758 CGCGACAAAACCTCACGC 60.128 61.111 0.00 0.00 44.64 5.34
40 41 2.594962 CGCGACAAAACCTCACGCT 61.595 57.895 0.00 0.00 45.64 5.07
41 42 1.204312 GCGACAAAACCTCACGCTC 59.796 57.895 0.00 0.00 44.67 5.03
42 43 1.487231 CGACAAAACCTCACGCTCG 59.513 57.895 0.00 0.00 0.00 5.03
43 44 1.204312 GACAAAACCTCACGCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
44 45 2.170985 CAAAACCTCACGCTCGCG 59.829 61.111 10.06 10.06 46.03 5.87
45 46 3.712881 AAAACCTCACGCTCGCGC 61.713 61.111 11.65 0.00 44.19 6.86
46 47 4.961511 AAACCTCACGCTCGCGCA 62.962 61.111 8.75 0.00 44.19 6.09
55 56 2.126071 GCTCGCGCAGACCACTAA 60.126 61.111 8.75 0.00 35.78 2.24
60 61 2.103042 GCGCAGACCACTAAGCCAG 61.103 63.158 0.30 0.00 0.00 4.85
61 62 2.103042 CGCAGACCACTAAGCCAGC 61.103 63.158 0.00 0.00 0.00 4.85
62 63 1.003355 GCAGACCACTAAGCCAGCA 60.003 57.895 0.00 0.00 0.00 4.41
64 65 0.322975 CAGACCACTAAGCCAGCAGT 59.677 55.000 0.00 0.00 0.00 4.40
65 66 0.610687 AGACCACTAAGCCAGCAGTC 59.389 55.000 0.00 0.00 32.31 3.51
67 68 0.764890 ACCACTAAGCCAGCAGTCAA 59.235 50.000 0.00 0.00 0.00 3.18
68 69 1.142870 ACCACTAAGCCAGCAGTCAAA 59.857 47.619 0.00 0.00 0.00 2.69
69 70 1.808945 CCACTAAGCCAGCAGTCAAAG 59.191 52.381 0.00 0.00 0.00 2.77
70 71 1.808945 CACTAAGCCAGCAGTCAAAGG 59.191 52.381 0.00 0.00 0.00 3.11
71 72 1.421646 ACTAAGCCAGCAGTCAAAGGT 59.578 47.619 0.00 0.00 0.00 3.50
73 74 1.035139 AAGCCAGCAGTCAAAGGTTG 58.965 50.000 0.00 0.00 0.00 3.77
74 75 0.106519 AGCCAGCAGTCAAAGGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
76 77 0.954452 CCAGCAGTCAAAGGTTGTCC 59.046 55.000 0.00 0.00 0.00 4.02
78 79 2.224523 CCAGCAGTCAAAGGTTGTCCTA 60.225 50.000 0.00 0.00 44.35 2.94
81 82 2.808543 GCAGTCAAAGGTTGTCCTAGTG 59.191 50.000 0.00 0.00 44.35 2.74
82 83 3.744530 GCAGTCAAAGGTTGTCCTAGTGT 60.745 47.826 0.00 0.00 44.35 3.55
89 90 4.057063 AGGTTGTCCTAGTGTAGGCTTA 57.943 45.455 0.00 0.00 45.82 3.09
91 92 5.030820 AGGTTGTCCTAGTGTAGGCTTATT 58.969 41.667 0.00 0.00 45.82 1.40
92 93 5.487845 AGGTTGTCCTAGTGTAGGCTTATTT 59.512 40.000 0.00 0.00 45.82 1.40
94 95 5.609533 TGTCCTAGTGTAGGCTTATTTCC 57.390 43.478 0.00 0.00 45.82 3.13
128 129 9.970395 AAATACATTTAGACACGTCCGATTATA 57.030 29.630 0.00 0.00 0.00 0.98
133 134 9.193133 CATTTAGACACGTCCGATTATATTCTT 57.807 33.333 0.00 0.00 0.00 2.52
143 144 6.592607 GTCCGATTATATTCTTCCCGCAAATA 59.407 38.462 0.00 0.00 0.00 1.40
182 183 1.153429 GATTCGAACCTGGGTCCCG 60.153 63.158 6.08 0.00 0.00 5.14
183 184 3.325201 ATTCGAACCTGGGTCCCGC 62.325 63.158 6.08 0.00 0.00 6.13
191 192 2.360600 TGGGTCCCGCCAAATTCG 60.361 61.111 2.65 0.00 39.65 3.34
192 193 2.045731 GGGTCCCGCCAAATTCGA 60.046 61.111 0.00 0.00 39.65 3.71
197 198 1.024579 TCCCGCCAAATTCGAAGAGC 61.025 55.000 3.35 2.79 38.43 4.09
203 204 1.122419 CAAATTCGAAGAGCGTGCGC 61.122 55.000 8.67 8.67 41.80 6.09
204 205 1.565156 AAATTCGAAGAGCGTGCGCA 61.565 50.000 18.87 5.66 44.88 6.09
205 206 1.959899 AATTCGAAGAGCGTGCGCAG 61.960 55.000 12.22 6.39 44.88 5.18
215 216 2.802667 CGTGCGCAGACCACTATGC 61.803 63.158 12.22 0.00 39.09 3.14
220 221 0.940126 CGCAGACCACTATGCCAATC 59.060 55.000 0.00 0.00 39.30 2.67
221 222 0.940126 GCAGACCACTATGCCAATCG 59.060 55.000 0.00 0.00 36.41 3.34
222 223 1.473257 GCAGACCACTATGCCAATCGA 60.473 52.381 0.00 0.00 36.41 3.59
223 224 2.808202 GCAGACCACTATGCCAATCGAT 60.808 50.000 0.00 0.00 36.41 3.59
225 226 2.700371 AGACCACTATGCCAATCGATGA 59.300 45.455 0.00 0.00 0.00 2.92
226 227 3.062763 GACCACTATGCCAATCGATGAG 58.937 50.000 0.00 0.00 0.00 2.90
227 228 2.435805 ACCACTATGCCAATCGATGAGT 59.564 45.455 0.00 0.00 0.00 3.41
228 229 2.804527 CCACTATGCCAATCGATGAGTG 59.195 50.000 0.00 6.31 34.07 3.51
229 230 2.222678 CACTATGCCAATCGATGAGTGC 59.777 50.000 0.00 0.00 0.00 4.40
230 231 1.458445 CTATGCCAATCGATGAGTGCG 59.542 52.381 0.00 0.00 0.00 5.34
231 232 0.179076 ATGCCAATCGATGAGTGCGA 60.179 50.000 0.00 0.00 42.48 5.10
233 234 1.930100 CCAATCGATGAGTGCGAGC 59.070 57.895 0.00 0.00 41.49 5.03
234 235 0.807275 CCAATCGATGAGTGCGAGCA 60.807 55.000 0.00 0.00 41.49 4.26
235 236 0.299895 CAATCGATGAGTGCGAGCAC 59.700 55.000 19.45 19.45 46.50 4.40
243 244 3.181367 GTGCGAGCACATTCCTGG 58.819 61.111 21.73 0.00 45.53 4.45
244 245 2.747460 TGCGAGCACATTCCTGGC 60.747 61.111 0.00 0.00 35.03 4.85
247 248 0.744414 GCGAGCACATTCCTGGCTTA 60.744 55.000 0.00 0.00 38.15 3.09
248 249 1.009829 CGAGCACATTCCTGGCTTAC 58.990 55.000 0.00 0.00 38.15 2.34
250 251 1.026718 AGCACATTCCTGGCTTACGC 61.027 55.000 0.00 0.00 33.21 4.42
251 252 1.026718 GCACATTCCTGGCTTACGCT 61.027 55.000 0.00 0.00 36.09 5.07
252 253 1.009829 CACATTCCTGGCTTACGCTC 58.990 55.000 0.00 0.00 36.09 5.03
253 254 0.905357 ACATTCCTGGCTTACGCTCT 59.095 50.000 0.00 0.00 36.09 4.09
254 255 1.279271 ACATTCCTGGCTTACGCTCTT 59.721 47.619 0.00 0.00 36.09 2.85
255 256 2.290323 ACATTCCTGGCTTACGCTCTTT 60.290 45.455 0.00 0.00 36.09 2.52
256 257 2.561478 TTCCTGGCTTACGCTCTTTT 57.439 45.000 0.00 0.00 36.09 2.27
257 258 2.561478 TCCTGGCTTACGCTCTTTTT 57.439 45.000 0.00 0.00 36.09 1.94
303 305 9.508567 CGGATTTCTTTTATCCTTTTTGAGATC 57.491 33.333 0.00 0.00 39.55 2.75
319 321 3.181465 TGAGATCTTGGGTATTCTTCGGC 60.181 47.826 0.00 0.00 0.00 5.54
326 329 6.005198 TCTTGGGTATTCTTCGGCTTTTTAA 58.995 36.000 0.00 0.00 0.00 1.52
762 783 9.273016 GAAAGAAAGAATAAAAGGAAAAAGGGG 57.727 33.333 0.00 0.00 0.00 4.79
766 787 6.681729 AGAATAAAAGGAAAAAGGGGGAAC 57.318 37.500 0.00 0.00 0.00 3.62
767 788 6.390504 AGAATAAAAGGAAAAAGGGGGAACT 58.609 36.000 0.00 0.00 0.00 3.01
768 789 6.270000 AGAATAAAAGGAAAAAGGGGGAACTG 59.730 38.462 0.00 0.00 0.00 3.16
778 800 1.599797 GGGGAACTGGACACAACGG 60.600 63.158 0.00 0.00 0.00 4.44
782 804 1.156736 GAACTGGACACAACGGATGG 58.843 55.000 0.00 0.00 0.00 3.51
812 834 0.638746 GTGGTTAGTTGCGTCGATCG 59.361 55.000 9.36 9.36 43.12 3.69
821 843 0.450184 TGCGTCGATCGACATCAAGA 59.550 50.000 38.62 18.01 44.77 3.02
827 849 3.017442 TCGATCGACATCAAGAGGTCTT 58.983 45.455 15.15 1.01 39.71 3.01
839 861 1.202818 AGAGGTCTTGTGTTTGAGCCC 60.203 52.381 0.00 0.00 0.00 5.19
840 862 0.550914 AGGTCTTGTGTTTGAGCCCA 59.449 50.000 0.00 0.00 0.00 5.36
841 863 1.064017 AGGTCTTGTGTTTGAGCCCAA 60.064 47.619 0.00 0.00 0.00 4.12
842 864 1.067060 GGTCTTGTGTTTGAGCCCAAC 59.933 52.381 0.00 0.00 30.88 3.77
843 865 1.748493 GTCTTGTGTTTGAGCCCAACA 59.252 47.619 0.00 0.00 30.88 3.33
844 866 2.362077 GTCTTGTGTTTGAGCCCAACAT 59.638 45.455 0.00 0.00 30.88 2.71
845 867 2.361757 TCTTGTGTTTGAGCCCAACATG 59.638 45.455 0.00 0.00 30.88 3.21
846 868 2.064434 TGTGTTTGAGCCCAACATGA 57.936 45.000 0.00 0.00 30.88 3.07
847 869 1.680735 TGTGTTTGAGCCCAACATGAC 59.319 47.619 0.00 0.00 30.88 3.06
848 870 0.950836 TGTTTGAGCCCAACATGACG 59.049 50.000 0.00 0.00 30.88 4.35
849 871 0.951558 GTTTGAGCCCAACATGACGT 59.048 50.000 0.00 0.00 30.88 4.34
850 872 0.950836 TTTGAGCCCAACATGACGTG 59.049 50.000 0.00 0.00 30.88 4.49
851 873 1.514678 TTGAGCCCAACATGACGTGC 61.515 55.000 0.00 0.00 0.00 5.34
852 874 2.672996 AGCCCAACATGACGTGCC 60.673 61.111 0.00 0.00 0.00 5.01
853 875 4.101790 GCCCAACATGACGTGCCG 62.102 66.667 0.00 0.00 0.00 5.69
854 876 3.430862 CCCAACATGACGTGCCGG 61.431 66.667 0.00 0.00 0.00 6.13
855 877 2.358125 CCAACATGACGTGCCGGA 60.358 61.111 5.05 0.00 0.00 5.14
856 878 2.390599 CCAACATGACGTGCCGGAG 61.391 63.158 5.05 0.00 0.00 4.63
857 879 1.667830 CAACATGACGTGCCGGAGT 60.668 57.895 5.05 0.17 0.00 3.85
858 880 1.070786 AACATGACGTGCCGGAGTT 59.929 52.632 5.05 0.00 0.00 3.01
859 881 0.534203 AACATGACGTGCCGGAGTTT 60.534 50.000 5.05 0.00 0.00 2.66
860 882 1.227999 ACATGACGTGCCGGAGTTTG 61.228 55.000 5.05 6.57 0.00 2.93
861 883 1.070786 ATGACGTGCCGGAGTTTGT 59.929 52.632 5.05 0.00 0.00 2.83
862 884 0.534203 ATGACGTGCCGGAGTTTGTT 60.534 50.000 5.05 0.00 0.00 2.83
863 885 0.745128 TGACGTGCCGGAGTTTGTTT 60.745 50.000 5.05 0.00 0.00 2.83
864 886 0.379316 GACGTGCCGGAGTTTGTTTT 59.621 50.000 5.05 0.00 0.00 2.43
865 887 1.598601 GACGTGCCGGAGTTTGTTTTA 59.401 47.619 5.05 0.00 0.00 1.52
866 888 1.600485 ACGTGCCGGAGTTTGTTTTAG 59.400 47.619 5.05 0.00 0.00 1.85
867 889 1.600485 CGTGCCGGAGTTTGTTTTAGT 59.400 47.619 5.05 0.00 0.00 2.24
868 890 2.349155 CGTGCCGGAGTTTGTTTTAGTC 60.349 50.000 5.05 0.00 0.00 2.59
869 891 2.614983 GTGCCGGAGTTTGTTTTAGTCA 59.385 45.455 5.05 0.00 0.00 3.41
870 892 3.252458 GTGCCGGAGTTTGTTTTAGTCAT 59.748 43.478 5.05 0.00 0.00 3.06
871 893 3.252215 TGCCGGAGTTTGTTTTAGTCATG 59.748 43.478 5.05 0.00 0.00 3.07
872 894 3.365969 GCCGGAGTTTGTTTTAGTCATGG 60.366 47.826 5.05 0.00 0.00 3.66
873 895 3.818773 CCGGAGTTTGTTTTAGTCATGGT 59.181 43.478 0.00 0.00 0.00 3.55
874 896 4.998672 CCGGAGTTTGTTTTAGTCATGGTA 59.001 41.667 0.00 0.00 0.00 3.25
875 897 5.121768 CCGGAGTTTGTTTTAGTCATGGTAG 59.878 44.000 0.00 0.00 0.00 3.18
876 898 5.390567 CGGAGTTTGTTTTAGTCATGGTAGC 60.391 44.000 0.00 0.00 0.00 3.58
877 899 5.106277 GGAGTTTGTTTTAGTCATGGTAGCC 60.106 44.000 0.00 0.00 0.00 3.93
878 900 5.381757 AGTTTGTTTTAGTCATGGTAGCCA 58.618 37.500 0.00 0.00 38.19 4.75
879 901 5.473504 AGTTTGTTTTAGTCATGGTAGCCAG 59.526 40.000 0.00 0.00 36.75 4.85
880 902 3.343617 TGTTTTAGTCATGGTAGCCAGC 58.656 45.455 0.00 0.00 36.75 4.85
881 903 2.309528 TTTAGTCATGGTAGCCAGCG 57.690 50.000 0.00 0.00 36.75 5.18
882 904 1.480789 TTAGTCATGGTAGCCAGCGA 58.519 50.000 0.00 0.00 36.75 4.93
883 905 1.704641 TAGTCATGGTAGCCAGCGAT 58.295 50.000 0.00 0.00 36.75 4.58
884 906 1.704641 AGTCATGGTAGCCAGCGATA 58.295 50.000 0.00 0.00 36.75 2.92
885 907 2.039418 AGTCATGGTAGCCAGCGATAA 58.961 47.619 0.00 0.00 36.75 1.75
886 908 2.634940 AGTCATGGTAGCCAGCGATAAT 59.365 45.455 0.00 0.00 36.75 1.28
887 909 2.738846 GTCATGGTAGCCAGCGATAATG 59.261 50.000 0.00 0.00 36.75 1.90
888 910 1.466167 CATGGTAGCCAGCGATAATGC 59.534 52.381 0.00 0.00 36.75 3.56
897 919 3.351604 GCGATAATGCTGCGCTTAC 57.648 52.632 9.73 0.00 46.53 2.34
898 920 0.861837 GCGATAATGCTGCGCTTACT 59.138 50.000 9.73 0.00 46.53 2.24
899 921 1.397693 GCGATAATGCTGCGCTTACTG 60.398 52.381 9.73 0.00 46.53 2.74
900 922 1.193203 CGATAATGCTGCGCTTACTGG 59.807 52.381 9.73 0.00 0.00 4.00
901 923 2.213499 GATAATGCTGCGCTTACTGGT 58.787 47.619 9.73 0.00 0.00 4.00
902 924 2.107950 TAATGCTGCGCTTACTGGTT 57.892 45.000 9.73 0.00 0.00 3.67
903 925 2.107950 AATGCTGCGCTTACTGGTTA 57.892 45.000 9.73 0.00 0.00 2.85
904 926 2.107950 ATGCTGCGCTTACTGGTTAA 57.892 45.000 9.73 0.00 0.00 2.01
905 927 2.107950 TGCTGCGCTTACTGGTTAAT 57.892 45.000 9.73 0.00 0.00 1.40
906 928 1.737236 TGCTGCGCTTACTGGTTAATG 59.263 47.619 9.73 0.00 0.00 1.90
907 929 1.064060 GCTGCGCTTACTGGTTAATGG 59.936 52.381 9.73 0.00 0.00 3.16
908 930 1.670811 CTGCGCTTACTGGTTAATGGG 59.329 52.381 9.73 0.00 0.00 4.00
909 931 1.279558 TGCGCTTACTGGTTAATGGGA 59.720 47.619 9.73 0.00 0.00 4.37
910 932 2.092646 TGCGCTTACTGGTTAATGGGAT 60.093 45.455 9.73 0.00 0.00 3.85
911 933 2.290641 GCGCTTACTGGTTAATGGGATG 59.709 50.000 0.00 0.00 0.00 3.51
912 934 2.290641 CGCTTACTGGTTAATGGGATGC 59.709 50.000 0.00 0.00 0.00 3.91
913 935 3.555966 GCTTACTGGTTAATGGGATGCT 58.444 45.455 0.00 0.00 0.00 3.79
914 936 4.714632 GCTTACTGGTTAATGGGATGCTA 58.285 43.478 0.00 0.00 0.00 3.49
915 937 5.316987 GCTTACTGGTTAATGGGATGCTAT 58.683 41.667 0.00 0.00 0.00 2.97
916 938 5.770162 GCTTACTGGTTAATGGGATGCTATT 59.230 40.000 0.73 0.73 0.00 1.73
917 939 6.265422 GCTTACTGGTTAATGGGATGCTATTT 59.735 38.462 0.22 0.00 0.00 1.40
918 940 7.522236 GCTTACTGGTTAATGGGATGCTATTTC 60.522 40.741 0.22 0.00 0.00 2.17
919 941 6.018433 ACTGGTTAATGGGATGCTATTTCT 57.982 37.500 0.22 0.00 0.00 2.52
920 942 6.435164 ACTGGTTAATGGGATGCTATTTCTT 58.565 36.000 0.22 0.00 0.00 2.52
921 943 6.322201 ACTGGTTAATGGGATGCTATTTCTTG 59.678 38.462 0.22 0.00 0.00 3.02
922 944 6.194235 TGGTTAATGGGATGCTATTTCTTGT 58.806 36.000 0.22 0.00 0.00 3.16
923 945 7.350382 TGGTTAATGGGATGCTATTTCTTGTA 58.650 34.615 0.22 0.00 0.00 2.41
924 946 7.836685 TGGTTAATGGGATGCTATTTCTTGTAA 59.163 33.333 0.22 0.00 0.00 2.41
925 947 8.691797 GGTTAATGGGATGCTATTTCTTGTAAA 58.308 33.333 0.22 0.00 0.00 2.01
948 970 6.838198 AAAAAGGTTAGAATTTGTTTCGCC 57.162 33.333 0.00 0.00 39.46 5.54
949 971 5.523438 AAAGGTTAGAATTTGTTTCGCCA 57.477 34.783 0.00 0.00 39.46 5.69
950 972 5.523438 AAGGTTAGAATTTGTTTCGCCAA 57.477 34.783 0.00 0.00 39.46 4.52
951 973 5.523438 AGGTTAGAATTTGTTTCGCCAAA 57.477 34.783 0.00 0.00 39.46 3.28
952 974 5.286438 AGGTTAGAATTTGTTTCGCCAAAC 58.714 37.500 0.00 0.00 42.16 2.93
953 975 4.446385 GGTTAGAATTTGTTTCGCCAAACC 59.554 41.667 4.42 0.00 41.25 3.27
954 976 5.286438 GTTAGAATTTGTTTCGCCAAACCT 58.714 37.500 4.42 0.00 41.25 3.50
955 977 3.977427 AGAATTTGTTTCGCCAAACCTC 58.023 40.909 4.42 0.00 41.25 3.85
956 978 3.636764 AGAATTTGTTTCGCCAAACCTCT 59.363 39.130 4.42 0.00 41.25 3.69
957 979 4.825085 AGAATTTGTTTCGCCAAACCTCTA 59.175 37.500 4.42 0.00 41.25 2.43
958 980 4.766404 ATTTGTTTCGCCAAACCTCTAG 57.234 40.909 4.42 0.00 41.25 2.43
959 981 3.478857 TTGTTTCGCCAAACCTCTAGA 57.521 42.857 4.42 0.00 41.25 2.43
960 982 3.695830 TGTTTCGCCAAACCTCTAGAT 57.304 42.857 4.42 0.00 41.25 1.98
961 983 4.015872 TGTTTCGCCAAACCTCTAGATT 57.984 40.909 4.42 0.00 41.25 2.40
962 984 4.394729 TGTTTCGCCAAACCTCTAGATTT 58.605 39.130 4.42 0.00 41.25 2.17
963 985 5.553123 TGTTTCGCCAAACCTCTAGATTTA 58.447 37.500 4.42 0.00 41.25 1.40
964 986 5.998981 TGTTTCGCCAAACCTCTAGATTTAA 59.001 36.000 4.42 0.00 41.25 1.52
965 987 6.487331 TGTTTCGCCAAACCTCTAGATTTAAA 59.513 34.615 4.42 0.00 41.25 1.52
966 988 7.013464 TGTTTCGCCAAACCTCTAGATTTAAAA 59.987 33.333 4.42 0.00 41.25 1.52
967 989 7.696992 TTCGCCAAACCTCTAGATTTAAAAT 57.303 32.000 0.00 0.00 0.00 1.82
968 990 7.083875 TCGCCAAACCTCTAGATTTAAAATG 57.916 36.000 0.00 0.00 0.00 2.32
969 991 6.094881 TCGCCAAACCTCTAGATTTAAAATGG 59.905 38.462 0.00 0.00 0.00 3.16
970 992 6.094881 CGCCAAACCTCTAGATTTAAAATGGA 59.905 38.462 0.00 0.00 0.00 3.41
971 993 7.258441 GCCAAACCTCTAGATTTAAAATGGAC 58.742 38.462 0.00 0.00 0.00 4.02
972 994 7.122799 GCCAAACCTCTAGATTTAAAATGGACT 59.877 37.037 0.00 0.00 0.00 3.85
973 995 9.025041 CCAAACCTCTAGATTTAAAATGGACTT 57.975 33.333 0.00 0.00 0.00 3.01
978 1000 9.774742 CCTCTAGATTTAAAATGGACTTTTTCG 57.225 33.333 0.00 0.00 38.09 3.46
979 1001 9.278734 CTCTAGATTTAAAATGGACTTTTTCGC 57.721 33.333 0.00 0.00 38.09 4.70
980 1002 6.927933 AGATTTAAAATGGACTTTTTCGCG 57.072 33.333 0.00 0.00 38.09 5.87
981 1003 6.674066 AGATTTAAAATGGACTTTTTCGCGA 58.326 32.000 3.71 3.71 38.09 5.87
982 1004 6.581166 AGATTTAAAATGGACTTTTTCGCGAC 59.419 34.615 9.15 0.00 38.09 5.19
983 1005 2.309898 AAATGGACTTTTTCGCGACG 57.690 45.000 9.15 0.00 0.00 5.12
1025 1047 3.977244 CGGGTTGGCTGTGGTTGC 61.977 66.667 0.00 0.00 0.00 4.17
1568 1612 0.525311 GCCTGCCTCTCTTTTTCTGC 59.475 55.000 0.00 0.00 0.00 4.26
1772 3010 3.450457 TGTTTGCCATCAGGAGTTTTGTT 59.550 39.130 0.00 0.00 36.89 2.83
1939 3349 3.521727 AGGATCCTTGTAGGTCAGTTGT 58.478 45.455 9.02 0.00 36.53 3.32
2153 3575 0.670546 ACACGAGAAATGCTGACGGG 60.671 55.000 0.00 0.00 0.00 5.28
2361 3942 2.915869 TGGGGATAACACTCCTGAACT 58.084 47.619 0.00 0.00 35.50 3.01
2549 4136 1.431243 TGCAATGGAAAGGGGGTTAGT 59.569 47.619 0.00 0.00 0.00 2.24
2555 4142 0.035725 GAAAGGGGGTTAGTCCGGTG 60.036 60.000 0.00 0.00 37.00 4.94
3377 4972 9.740710 AAACTTATATGCAGACTAAAAAGGACT 57.259 29.630 0.00 0.00 0.00 3.85
3492 5087 7.201705 GCTAAATTTTAAGTACTCCCTGCGATT 60.202 37.037 0.00 0.00 0.00 3.34
3660 5255 6.513180 TCACAAAGCCTATAAATAGAGGTCG 58.487 40.000 3.27 0.00 37.04 4.79
3773 5380 3.594134 ACTGAACTTCTGCTGCTACATC 58.406 45.455 0.00 0.00 0.00 3.06
3898 5505 0.311790 CAACCGTGTGCTGCTTCAAT 59.688 50.000 0.00 0.00 0.00 2.57
4930 6543 5.004916 GCTCTTACTAAGCTCTTTTACGCTG 59.995 44.000 0.00 0.00 36.45 5.18
5229 6842 2.656560 AGCGTTACACATCAGACCTC 57.343 50.000 0.00 0.00 0.00 3.85
5288 6901 6.784473 ACCAATTGAAATTTCCTCTTCTTCCT 59.216 34.615 15.48 0.00 0.00 3.36
5361 6977 4.475135 GCGAAGGACCTGGGAGCC 62.475 72.222 0.00 0.00 0.00 4.70
5447 7063 6.862608 CACAGAGTGCAGTGCATTTTAATTTA 59.137 34.615 22.87 0.00 41.91 1.40
5448 7064 7.543172 CACAGAGTGCAGTGCATTTTAATTTAT 59.457 33.333 22.87 0.00 41.91 1.40
5620 7244 7.928307 AAAATGGGAGAATATCATACGGATG 57.072 36.000 0.00 0.00 36.72 3.51
5661 7288 5.105269 ACCGGTATGTTTGTCCTTTTTGTTT 60.105 36.000 4.49 0.00 0.00 2.83
5662 7289 6.096564 ACCGGTATGTTTGTCCTTTTTGTTTA 59.903 34.615 4.49 0.00 0.00 2.01
5663 7290 7.149307 CCGGTATGTTTGTCCTTTTTGTTTAT 58.851 34.615 0.00 0.00 0.00 1.40
5664 7291 7.654116 CCGGTATGTTTGTCCTTTTTGTTTATT 59.346 33.333 0.00 0.00 0.00 1.40
5671 7298 8.592155 GTTTGTCCTTTTTGTTTATTGACTCAC 58.408 33.333 0.00 0.00 0.00 3.51
5841 7500 3.321111 TGAGAAACATAGTCCCTATCCGC 59.679 47.826 0.00 0.00 0.00 5.54
5843 7502 1.349067 AACATAGTCCCTATCCGCCC 58.651 55.000 0.00 0.00 0.00 6.13
5872 7531 1.336332 CGGTCAAGATGGATAGAGGCG 60.336 57.143 0.00 0.00 0.00 5.52
5873 7532 1.001406 GGTCAAGATGGATAGAGGCGG 59.999 57.143 0.00 0.00 0.00 6.13
5874 7533 1.689273 GTCAAGATGGATAGAGGCGGT 59.311 52.381 0.00 0.00 0.00 5.68
5875 7534 2.103263 GTCAAGATGGATAGAGGCGGTT 59.897 50.000 0.00 0.00 0.00 4.44
5876 7535 2.771943 TCAAGATGGATAGAGGCGGTTT 59.228 45.455 0.00 0.00 0.00 3.27
5877 7536 2.874701 CAAGATGGATAGAGGCGGTTTG 59.125 50.000 0.00 0.00 0.00 2.93
5878 7537 2.398588 AGATGGATAGAGGCGGTTTGA 58.601 47.619 0.00 0.00 0.00 2.69
5879 7538 2.366916 AGATGGATAGAGGCGGTTTGAG 59.633 50.000 0.00 0.00 0.00 3.02
5980 7641 1.263217 GTCACTTCCGCGTTTGACAAT 59.737 47.619 16.92 0.00 38.60 2.71
5985 7646 1.872388 TCCGCGTTTGACAATCTTGA 58.128 45.000 4.92 0.00 0.00 3.02
6021 7684 2.203480 TTGCCTGCGCCCTTTCTT 60.203 55.556 4.18 0.00 0.00 2.52
6030 7693 0.890996 CGCCCTTTCTTGCCTGAAGT 60.891 55.000 0.00 0.00 32.90 3.01
6055 7718 4.142049 ACTCAGCATTTACCACTCTAGAGC 60.142 45.833 19.97 3.16 0.00 4.09
6091 7754 1.185618 TGCCACCACTCTAGAGCGTT 61.186 55.000 19.97 0.00 0.00 4.84
6152 7817 1.550869 CCAAAACTCTCCCTTGCCCAT 60.551 52.381 0.00 0.00 0.00 4.00
6183 7848 1.202973 CCTGACGCGACTTAGCATCG 61.203 60.000 15.93 0.00 42.55 3.84
6241 7906 0.320421 GCCTAGAGCAAACGTGACCA 60.320 55.000 0.00 0.00 42.97 4.02
6321 7986 2.363038 CGGGGTTACGATCCTGACAATA 59.637 50.000 0.00 0.00 35.47 1.90
6331 7996 7.834881 ACGATCCTGACAATAAGTATTAGGA 57.165 36.000 0.00 0.00 38.50 2.94
6359 8024 2.145298 AGAGGGGTAGAGCCTAGCTAA 58.855 52.381 0.00 0.00 39.88 3.09
6680 8361 2.124693 GCTCTGGAGGAGGAGGACG 61.125 68.421 0.00 0.00 42.08 4.79
6681 8362 1.610327 CTCTGGAGGAGGAGGACGA 59.390 63.158 0.00 0.00 38.35 4.20
6696 8377 6.249951 AGGAGGACGACTTATATAGAATGCT 58.750 40.000 0.00 0.00 0.00 3.79
6698 8379 6.376018 GGAGGACGACTTATATAGAATGCTCT 59.624 42.308 0.00 0.00 35.52 4.09
6712 8393 2.906458 CTCTGCGGCCTCCTTCAT 59.094 61.111 0.00 0.00 0.00 2.57
6717 8398 2.203070 CGGCCTCCTTCATTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
6734 8415 4.382320 GCGTCGCCAGGGTGGTTA 62.382 66.667 5.75 0.00 40.46 2.85
6737 8418 0.675522 CGTCGCCAGGGTGGTTAATT 60.676 55.000 0.00 0.00 40.46 1.40
6738 8419 0.808755 GTCGCCAGGGTGGTTAATTG 59.191 55.000 0.00 0.00 40.46 2.32
6739 8420 0.402504 TCGCCAGGGTGGTTAATTGT 59.597 50.000 0.00 0.00 40.46 2.71
6740 8421 1.629353 TCGCCAGGGTGGTTAATTGTA 59.371 47.619 0.00 0.00 40.46 2.41
6741 8422 2.040012 TCGCCAGGGTGGTTAATTGTAA 59.960 45.455 0.00 0.00 40.46 2.41
6742 8423 2.162809 CGCCAGGGTGGTTAATTGTAAC 59.837 50.000 0.00 0.00 40.46 2.50
6743 8424 2.162809 GCCAGGGTGGTTAATTGTAACG 59.837 50.000 0.00 0.00 40.57 3.18
6744 8425 2.162809 CCAGGGTGGTTAATTGTAACGC 59.837 50.000 0.00 0.00 40.57 4.84
6745 8426 2.162809 CAGGGTGGTTAATTGTAACGCC 59.837 50.000 2.33 2.33 40.57 5.68
6746 8427 1.473677 GGGTGGTTAATTGTAACGCCC 59.526 52.381 11.84 11.84 43.09 6.13
6747 8428 2.161030 GGTGGTTAATTGTAACGCCCA 58.839 47.619 0.00 0.00 40.57 5.36
6748 8429 2.095110 GGTGGTTAATTGTAACGCCCAC 60.095 50.000 0.00 0.00 40.57 4.61
6750 8431 2.075338 GGTTAATTGTAACGCCCACGA 58.925 47.619 0.00 0.00 43.93 4.35
6751 8432 2.679336 GGTTAATTGTAACGCCCACGAT 59.321 45.455 0.00 0.00 43.93 3.73
6752 8433 3.486209 GGTTAATTGTAACGCCCACGATG 60.486 47.826 0.00 0.00 43.93 3.84
6753 8434 0.450184 AATTGTAACGCCCACGATGC 59.550 50.000 0.00 0.00 43.93 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.341778 ACCTAGGTTCGATTCTCGGGT 60.342 52.381 9.21 8.30 40.88 5.28
8 9 0.100146 GTCGCGACCTAGGTTCGATT 59.900 55.000 30.05 5.38 36.45 3.34
9 10 1.028330 TGTCGCGACCTAGGTTCGAT 61.028 55.000 34.34 6.07 36.45 3.59
10 11 1.236616 TTGTCGCGACCTAGGTTCGA 61.237 55.000 34.34 26.36 33.54 3.71
11 12 0.387622 TTTGTCGCGACCTAGGTTCG 60.388 55.000 34.34 23.55 0.00 3.95
12 13 1.458445 GTTTTGTCGCGACCTAGGTTC 59.542 52.381 34.34 15.17 0.00 3.62
13 14 1.505425 GTTTTGTCGCGACCTAGGTT 58.495 50.000 34.34 0.00 0.00 3.50
14 15 0.320160 GGTTTTGTCGCGACCTAGGT 60.320 55.000 34.34 16.26 0.00 3.08
15 16 0.037605 AGGTTTTGTCGCGACCTAGG 60.038 55.000 34.34 7.41 41.83 3.02
16 17 1.336517 TGAGGTTTTGTCGCGACCTAG 60.337 52.381 34.34 0.00 43.59 3.02
17 18 0.675083 TGAGGTTTTGTCGCGACCTA 59.325 50.000 34.34 20.64 43.59 3.08
18 19 0.878961 GTGAGGTTTTGTCGCGACCT 60.879 55.000 34.34 25.05 46.11 3.85
19 20 1.568025 GTGAGGTTTTGTCGCGACC 59.432 57.895 34.34 20.60 0.00 4.79
23 24 1.204312 GAGCGTGAGGTTTTGTCGC 59.796 57.895 0.00 0.00 45.11 5.19
24 25 1.487231 CGAGCGTGAGGTTTTGTCG 59.513 57.895 0.00 0.00 45.11 4.35
25 26 1.204312 GCGAGCGTGAGGTTTTGTC 59.796 57.895 0.00 0.00 45.11 3.18
26 27 2.594962 CGCGAGCGTGAGGTTTTGT 61.595 57.895 0.00 0.00 45.11 2.83
27 28 2.170985 CGCGAGCGTGAGGTTTTG 59.829 61.111 0.00 0.00 45.11 2.44
39 40 2.161486 GCTTAGTGGTCTGCGCGAG 61.161 63.158 12.10 4.52 0.00 5.03
40 41 2.126071 GCTTAGTGGTCTGCGCGA 60.126 61.111 12.10 0.00 0.00 5.87
41 42 3.188786 GGCTTAGTGGTCTGCGCG 61.189 66.667 0.00 0.00 0.00 6.86
42 43 2.047274 TGGCTTAGTGGTCTGCGC 60.047 61.111 0.00 0.00 0.00 6.09
43 44 2.103042 GCTGGCTTAGTGGTCTGCG 61.103 63.158 0.00 0.00 0.00 5.18
44 45 1.003355 TGCTGGCTTAGTGGTCTGC 60.003 57.895 0.00 0.00 36.54 4.26
45 46 0.322975 ACTGCTGGCTTAGTGGTCTG 59.677 55.000 0.00 0.00 0.00 3.51
46 47 0.610687 GACTGCTGGCTTAGTGGTCT 59.389 55.000 0.00 0.00 31.88 3.85
47 48 0.321671 TGACTGCTGGCTTAGTGGTC 59.678 55.000 0.00 0.00 33.69 4.02
55 56 0.106519 ACAACCTTTGACTGCTGGCT 60.107 50.000 0.00 0.00 0.00 4.75
60 61 2.808543 CACTAGGACAACCTTTGACTGC 59.191 50.000 0.00 0.00 45.36 4.40
61 62 4.073293 ACACTAGGACAACCTTTGACTG 57.927 45.455 0.00 0.00 45.36 3.51
62 63 5.470047 CTACACTAGGACAACCTTTGACT 57.530 43.478 0.00 0.00 45.36 3.41
107 108 8.744008 AGAATATAATCGGACGTGTCTAAATG 57.256 34.615 0.00 0.00 0.00 2.32
108 109 9.408069 GAAGAATATAATCGGACGTGTCTAAAT 57.592 33.333 0.00 0.00 0.00 1.40
118 119 3.921677 TGCGGGAAGAATATAATCGGAC 58.078 45.455 0.00 0.00 0.00 4.79
120 121 5.880054 ATTTGCGGGAAGAATATAATCGG 57.120 39.130 0.00 0.00 0.00 4.18
151 152 0.611062 TCGAATCCTGGTGGTCGACT 60.611 55.000 16.46 0.00 36.40 4.18
152 153 0.245539 TTCGAATCCTGGTGGTCGAC 59.754 55.000 7.13 7.13 39.51 4.20
153 154 0.245539 GTTCGAATCCTGGTGGTCGA 59.754 55.000 0.00 12.65 38.52 4.20
155 156 0.613777 AGGTTCGAATCCTGGTGGTC 59.386 55.000 15.63 0.00 33.62 4.02
156 157 0.324943 CAGGTTCGAATCCTGGTGGT 59.675 55.000 26.31 0.00 46.03 4.16
182 183 0.794605 GCACGCTCTTCGAATTTGGC 60.795 55.000 0.00 0.11 41.67 4.52
183 184 0.519175 CGCACGCTCTTCGAATTTGG 60.519 55.000 0.00 0.00 41.67 3.28
185 186 1.132640 GCGCACGCTCTTCGAATTT 59.867 52.632 7.96 0.00 41.67 1.82
191 192 3.482783 GGTCTGCGCACGCTCTTC 61.483 66.667 16.77 4.37 42.51 2.87
192 193 4.299547 TGGTCTGCGCACGCTCTT 62.300 61.111 16.77 0.00 42.51 2.85
197 198 2.802667 GCATAGTGGTCTGCGCACG 61.803 63.158 5.66 2.75 0.00 5.34
203 204 2.602257 TCGATTGGCATAGTGGTCTG 57.398 50.000 0.00 0.00 0.00 3.51
204 205 2.700371 TCATCGATTGGCATAGTGGTCT 59.300 45.455 0.00 0.00 0.00 3.85
205 206 3.062763 CTCATCGATTGGCATAGTGGTC 58.937 50.000 0.00 0.00 0.00 4.02
215 216 0.807275 TGCTCGCACTCATCGATTGG 60.807 55.000 0.00 0.00 35.25 3.16
220 221 0.299895 GAATGTGCTCGCACTCATCG 59.700 55.000 21.14 0.00 46.30 3.84
221 222 0.654683 GGAATGTGCTCGCACTCATC 59.345 55.000 21.14 15.50 46.30 2.92
222 223 0.251354 AGGAATGTGCTCGCACTCAT 59.749 50.000 21.14 7.91 46.30 2.90
223 224 0.671472 CAGGAATGTGCTCGCACTCA 60.671 55.000 21.14 4.28 46.30 3.41
225 226 1.376424 CCAGGAATGTGCTCGCACT 60.376 57.895 21.14 3.66 46.30 4.40
226 227 3.044059 GCCAGGAATGTGCTCGCAC 62.044 63.158 14.75 14.75 46.33 5.34
227 228 2.747460 GCCAGGAATGTGCTCGCA 60.747 61.111 0.00 0.00 0.00 5.10
228 229 0.744414 TAAGCCAGGAATGTGCTCGC 60.744 55.000 0.00 0.00 33.36 5.03
229 230 1.009829 GTAAGCCAGGAATGTGCTCG 58.990 55.000 0.00 0.00 33.36 5.03
230 231 1.009829 CGTAAGCCAGGAATGTGCTC 58.990 55.000 0.00 0.00 33.36 4.26
231 232 3.159298 CGTAAGCCAGGAATGTGCT 57.841 52.632 0.00 0.00 36.79 4.40
254 255 7.327761 TCCGAAAACGAAAACACATAACAAAAA 59.672 29.630 0.00 0.00 0.00 1.94
255 256 6.805271 TCCGAAAACGAAAACACATAACAAAA 59.195 30.769 0.00 0.00 0.00 2.44
256 257 6.320171 TCCGAAAACGAAAACACATAACAAA 58.680 32.000 0.00 0.00 0.00 2.83
257 258 5.877031 TCCGAAAACGAAAACACATAACAA 58.123 33.333 0.00 0.00 0.00 2.83
258 259 5.481200 TCCGAAAACGAAAACACATAACA 57.519 34.783 0.00 0.00 0.00 2.41
259 260 6.979701 AATCCGAAAACGAAAACACATAAC 57.020 33.333 0.00 0.00 0.00 1.89
260 261 7.419204 AGAAATCCGAAAACGAAAACACATAA 58.581 30.769 0.00 0.00 0.00 1.90
271 273 8.515473 AAAAGGATAAAAGAAATCCGAAAACG 57.485 30.769 0.00 0.00 46.37 3.60
298 300 3.070302 AGCCGAAGAATACCCAAGATCTC 59.930 47.826 0.00 0.00 0.00 2.75
303 305 4.783764 AAAAAGCCGAAGAATACCCAAG 57.216 40.909 0.00 0.00 0.00 3.61
355 358 8.332464 TGAAAAGACGTACACTGTTTATTTCAG 58.668 33.333 0.00 0.00 38.68 3.02
358 361 8.205131 AGTGAAAAGACGTACACTGTTTATTT 57.795 30.769 0.00 0.00 41.16 1.40
545 554 5.861222 TGCAGTAATGTTCAGTGTGTATG 57.139 39.130 0.00 0.00 0.00 2.39
734 752 9.273016 CCTTTTTCCTTTTATTCTTTCTTTCCC 57.727 33.333 0.00 0.00 0.00 3.97
747 765 4.078513 TCCAGTTCCCCCTTTTTCCTTTTA 60.079 41.667 0.00 0.00 0.00 1.52
753 771 1.961394 GTGTCCAGTTCCCCCTTTTTC 59.039 52.381 0.00 0.00 0.00 2.29
762 783 1.156736 CATCCGTTGTGTCCAGTTCC 58.843 55.000 0.00 0.00 0.00 3.62
766 787 0.606401 AAGCCATCCGTTGTGTCCAG 60.606 55.000 0.00 0.00 0.00 3.86
767 788 0.888736 CAAGCCATCCGTTGTGTCCA 60.889 55.000 0.00 0.00 0.00 4.02
768 789 0.889186 ACAAGCCATCCGTTGTGTCC 60.889 55.000 0.00 0.00 35.55 4.02
778 800 1.379044 CCACCAGGGACAAGCCATC 60.379 63.158 0.00 0.00 40.01 3.51
782 804 0.400594 ACTAACCACCAGGGACAAGC 59.599 55.000 0.00 0.00 41.15 4.01
821 843 0.550914 TGGGCTCAAACACAAGACCT 59.449 50.000 0.00 0.00 41.67 3.85
827 849 1.680735 GTCATGTTGGGCTCAAACACA 59.319 47.619 0.00 0.00 34.28 3.72
848 870 2.614983 TGACTAAAACAAACTCCGGCAC 59.385 45.455 0.00 0.00 0.00 5.01
849 871 2.920524 TGACTAAAACAAACTCCGGCA 58.079 42.857 0.00 0.00 0.00 5.69
850 872 3.365969 CCATGACTAAAACAAACTCCGGC 60.366 47.826 0.00 0.00 0.00 6.13
851 873 3.818773 ACCATGACTAAAACAAACTCCGG 59.181 43.478 0.00 0.00 0.00 5.14
852 874 5.390567 GCTACCATGACTAAAACAAACTCCG 60.391 44.000 0.00 0.00 0.00 4.63
853 875 5.106277 GGCTACCATGACTAAAACAAACTCC 60.106 44.000 0.00 0.00 0.00 3.85
854 876 5.472137 TGGCTACCATGACTAAAACAAACTC 59.528 40.000 0.00 0.00 0.00 3.01
855 877 5.381757 TGGCTACCATGACTAAAACAAACT 58.618 37.500 0.00 0.00 0.00 2.66
856 878 5.699097 TGGCTACCATGACTAAAACAAAC 57.301 39.130 0.00 0.00 0.00 2.93
857 879 4.217550 GCTGGCTACCATGACTAAAACAAA 59.782 41.667 0.00 0.00 30.82 2.83
858 880 3.756434 GCTGGCTACCATGACTAAAACAA 59.244 43.478 0.00 0.00 30.82 2.83
859 881 3.343617 GCTGGCTACCATGACTAAAACA 58.656 45.455 0.00 0.00 30.82 2.83
860 882 2.351726 CGCTGGCTACCATGACTAAAAC 59.648 50.000 0.00 0.00 30.82 2.43
861 883 2.235155 TCGCTGGCTACCATGACTAAAA 59.765 45.455 0.00 0.00 30.82 1.52
862 884 1.828595 TCGCTGGCTACCATGACTAAA 59.171 47.619 0.00 0.00 30.82 1.85
863 885 1.480789 TCGCTGGCTACCATGACTAA 58.519 50.000 0.00 0.00 30.82 2.24
864 886 1.704641 ATCGCTGGCTACCATGACTA 58.295 50.000 0.00 0.00 30.82 2.59
865 887 1.704641 TATCGCTGGCTACCATGACT 58.295 50.000 0.00 0.00 30.82 3.41
866 888 2.526304 TTATCGCTGGCTACCATGAC 57.474 50.000 0.00 0.00 30.82 3.06
867 889 2.871637 GCATTATCGCTGGCTACCATGA 60.872 50.000 0.00 0.00 30.82 3.07
868 890 1.466167 GCATTATCGCTGGCTACCATG 59.534 52.381 0.00 0.00 30.82 3.66
869 891 1.349026 AGCATTATCGCTGGCTACCAT 59.651 47.619 0.00 0.00 41.85 3.55
870 892 0.758734 AGCATTATCGCTGGCTACCA 59.241 50.000 0.00 0.00 41.85 3.25
871 893 3.614399 AGCATTATCGCTGGCTACC 57.386 52.632 0.00 0.00 41.85 3.18
888 910 1.670811 CCCATTAACCAGTAAGCGCAG 59.329 52.381 11.47 0.00 0.00 5.18
889 911 1.279558 TCCCATTAACCAGTAAGCGCA 59.720 47.619 11.47 0.00 0.00 6.09
890 912 2.032680 TCCCATTAACCAGTAAGCGC 57.967 50.000 0.00 0.00 0.00 5.92
891 913 2.290641 GCATCCCATTAACCAGTAAGCG 59.709 50.000 0.00 0.00 0.00 4.68
892 914 3.555966 AGCATCCCATTAACCAGTAAGC 58.444 45.455 0.00 0.00 0.00 3.09
893 915 7.721399 AGAAATAGCATCCCATTAACCAGTAAG 59.279 37.037 0.00 0.00 0.00 2.34
894 916 7.582719 AGAAATAGCATCCCATTAACCAGTAA 58.417 34.615 0.00 0.00 0.00 2.24
895 917 7.149202 AGAAATAGCATCCCATTAACCAGTA 57.851 36.000 0.00 0.00 0.00 2.74
896 918 6.018433 AGAAATAGCATCCCATTAACCAGT 57.982 37.500 0.00 0.00 0.00 4.00
897 919 6.322201 ACAAGAAATAGCATCCCATTAACCAG 59.678 38.462 0.00 0.00 0.00 4.00
898 920 6.194235 ACAAGAAATAGCATCCCATTAACCA 58.806 36.000 0.00 0.00 0.00 3.67
899 921 6.715347 ACAAGAAATAGCATCCCATTAACC 57.285 37.500 0.00 0.00 0.00 2.85
925 947 6.342111 TGGCGAAACAAATTCTAACCTTTTT 58.658 32.000 0.00 0.00 35.79 1.94
926 948 5.908341 TGGCGAAACAAATTCTAACCTTTT 58.092 33.333 0.00 0.00 35.79 2.27
927 949 5.523438 TGGCGAAACAAATTCTAACCTTT 57.477 34.783 0.00 0.00 35.79 3.11
928 950 5.523438 TTGGCGAAACAAATTCTAACCTT 57.477 34.783 0.00 0.00 35.79 3.50
929 951 5.286438 GTTTGGCGAAACAAATTCTAACCT 58.714 37.500 18.17 0.00 41.80 3.50
930 952 4.446385 GGTTTGGCGAAACAAATTCTAACC 59.554 41.667 23.27 1.67 42.95 2.85
931 953 5.286438 AGGTTTGGCGAAACAAATTCTAAC 58.714 37.500 23.27 5.25 42.95 2.34
932 954 5.300792 AGAGGTTTGGCGAAACAAATTCTAA 59.699 36.000 23.27 0.00 42.95 2.10
933 955 4.825085 AGAGGTTTGGCGAAACAAATTCTA 59.175 37.500 23.27 0.00 42.95 2.10
934 956 3.636764 AGAGGTTTGGCGAAACAAATTCT 59.363 39.130 23.27 16.48 42.95 2.40
935 957 3.977427 AGAGGTTTGGCGAAACAAATTC 58.023 40.909 23.27 14.88 42.95 2.17
936 958 4.825085 TCTAGAGGTTTGGCGAAACAAATT 59.175 37.500 23.27 9.92 42.95 1.82
937 959 4.394729 TCTAGAGGTTTGGCGAAACAAAT 58.605 39.130 23.27 10.43 42.95 2.32
938 960 3.811083 TCTAGAGGTTTGGCGAAACAAA 58.189 40.909 23.27 4.33 42.95 2.83
939 961 3.478857 TCTAGAGGTTTGGCGAAACAA 57.521 42.857 23.27 7.08 42.95 2.83
940 962 3.695830 ATCTAGAGGTTTGGCGAAACA 57.304 42.857 23.27 4.67 42.95 2.83
941 963 6.490566 TTAAATCTAGAGGTTTGGCGAAAC 57.509 37.500 15.24 15.24 40.79 2.78
942 964 7.513371 TTTTAAATCTAGAGGTTTGGCGAAA 57.487 32.000 0.00 0.00 0.00 3.46
943 965 7.362574 CCATTTTAAATCTAGAGGTTTGGCGAA 60.363 37.037 0.00 0.00 0.00 4.70
944 966 6.094881 CCATTTTAAATCTAGAGGTTTGGCGA 59.905 38.462 0.00 0.00 0.00 5.54
945 967 6.094881 TCCATTTTAAATCTAGAGGTTTGGCG 59.905 38.462 0.00 0.00 0.00 5.69
946 968 7.122799 AGTCCATTTTAAATCTAGAGGTTTGGC 59.877 37.037 0.00 0.00 0.00 4.52
947 969 8.581253 AGTCCATTTTAAATCTAGAGGTTTGG 57.419 34.615 0.00 0.54 0.00 3.28
952 974 9.774742 CGAAAAAGTCCATTTTAAATCTAGAGG 57.225 33.333 0.00 0.00 40.27 3.69
953 975 9.278734 GCGAAAAAGTCCATTTTAAATCTAGAG 57.721 33.333 0.00 0.00 40.27 2.43
954 976 7.960738 CGCGAAAAAGTCCATTTTAAATCTAGA 59.039 33.333 0.00 0.00 40.27 2.43
955 977 7.960738 TCGCGAAAAAGTCCATTTTAAATCTAG 59.039 33.333 6.20 0.00 40.27 2.43
956 978 7.747357 GTCGCGAAAAAGTCCATTTTAAATCTA 59.253 33.333 12.06 0.00 40.27 1.98
957 979 6.581166 GTCGCGAAAAAGTCCATTTTAAATCT 59.419 34.615 12.06 0.00 40.27 2.40
958 980 6.450667 CGTCGCGAAAAAGTCCATTTTAAATC 60.451 38.462 12.06 0.00 40.27 2.17
959 981 5.341196 CGTCGCGAAAAAGTCCATTTTAAAT 59.659 36.000 12.06 0.00 40.27 1.40
960 982 4.671516 CGTCGCGAAAAAGTCCATTTTAAA 59.328 37.500 12.06 0.00 40.27 1.52
961 983 4.212911 CGTCGCGAAAAAGTCCATTTTAA 58.787 39.130 12.06 0.00 40.27 1.52
962 984 3.364167 CCGTCGCGAAAAAGTCCATTTTA 60.364 43.478 12.06 0.00 40.27 1.52
963 985 2.603652 CCGTCGCGAAAAAGTCCATTTT 60.604 45.455 12.06 0.00 43.04 1.82
964 986 1.069500 CCGTCGCGAAAAAGTCCATTT 60.069 47.619 12.06 0.00 0.00 2.32
965 987 0.515564 CCGTCGCGAAAAAGTCCATT 59.484 50.000 12.06 0.00 0.00 3.16
966 988 0.320073 TCCGTCGCGAAAAAGTCCAT 60.320 50.000 12.06 0.00 0.00 3.41
967 989 0.320073 ATCCGTCGCGAAAAAGTCCA 60.320 50.000 12.06 0.00 0.00 4.02
968 990 0.094730 CATCCGTCGCGAAAAAGTCC 59.905 55.000 12.06 0.00 0.00 3.85
969 991 1.065358 TCATCCGTCGCGAAAAAGTC 58.935 50.000 12.06 0.00 0.00 3.01
970 992 0.788391 GTCATCCGTCGCGAAAAAGT 59.212 50.000 12.06 0.00 0.00 2.66
971 993 0.787787 TGTCATCCGTCGCGAAAAAG 59.212 50.000 12.06 2.39 0.00 2.27
972 994 0.509499 GTGTCATCCGTCGCGAAAAA 59.491 50.000 12.06 0.00 0.00 1.94
973 995 1.610715 CGTGTCATCCGTCGCGAAAA 61.611 55.000 12.06 0.00 39.45 2.29
974 996 2.084101 CGTGTCATCCGTCGCGAAA 61.084 57.895 12.06 0.00 39.45 3.46
975 997 2.503158 CGTGTCATCCGTCGCGAA 60.503 61.111 12.06 0.00 39.45 4.70
1585 1629 6.708054 ACAATCTTGTTCCTCTCACAAACTAG 59.292 38.462 0.00 0.00 38.47 2.57
1772 3010 5.011090 ACTAGCATGTTTAGATCGCTTGA 57.989 39.130 11.73 0.00 34.18 3.02
1868 3266 6.474427 TCGTCAAGTAACTGTGAAAACTGTAG 59.526 38.462 0.00 0.00 0.00 2.74
2153 3575 6.089249 ACCTCAAACATTTCTGGATTCAAC 57.911 37.500 0.00 0.00 0.00 3.18
2270 3851 9.342308 CACATGTGTAACTCCCTATGAAAATAT 57.658 33.333 18.03 0.00 38.04 1.28
2361 3942 1.177895 TGGGCAGTACGTACCGACAA 61.178 55.000 21.80 4.71 0.00 3.18
2563 4150 0.875059 CACAGCGGAAGACTTTTCCC 59.125 55.000 0.00 0.00 35.17 3.97
2564 4151 0.875059 CCACAGCGGAAGACTTTTCC 59.125 55.000 0.00 0.00 36.56 3.13
3492 5087 7.800155 TCCATTTGAGCGACAATTAATATGA 57.200 32.000 0.00 0.00 38.36 2.15
3660 5255 3.369576 CCAGGTTACAAACTAGAGGAGGC 60.370 52.174 0.00 0.00 0.00 4.70
3728 5323 4.394300 CCAAAACTCCTAGAGCACAAGATG 59.606 45.833 0.00 0.00 32.04 2.90
3773 5380 3.129638 GCTCTAGAGGTGAATATAGGCCG 59.870 52.174 21.23 0.00 0.00 6.13
3898 5505 6.266330 TGGTCCACATAACAATTGATGACAAA 59.734 34.615 13.59 0.00 39.54 2.83
4293 5902 7.502696 TGTCTTACACTAAAACATACACTGGT 58.497 34.615 0.00 0.00 0.00 4.00
4450 6059 9.979270 CAAAACTTGTCTACATACATCTGATTC 57.021 33.333 0.00 0.00 0.00 2.52
5229 6842 2.787723 ACAACGATTCATTTCGAGCG 57.212 45.000 0.31 0.00 41.62 5.03
5305 6918 6.507958 TTGCCATATCAGTCATTCGAAAAA 57.492 33.333 0.00 0.00 0.00 1.94
5361 6977 2.205022 TGCTTCCATTTCTCCTGGTG 57.795 50.000 0.00 0.00 35.19 4.17
5661 7288 3.627395 AATTCAGCCCGTGAGTCAATA 57.373 42.857 0.00 0.00 36.21 1.90
5662 7289 2.489329 CAAATTCAGCCCGTGAGTCAAT 59.511 45.455 0.00 0.00 36.21 2.57
5663 7290 1.879380 CAAATTCAGCCCGTGAGTCAA 59.121 47.619 0.00 0.00 36.21 3.18
5664 7291 1.522668 CAAATTCAGCCCGTGAGTCA 58.477 50.000 0.00 0.00 36.21 3.41
5671 7298 2.917933 TCTGTATCCAAATTCAGCCCG 58.082 47.619 0.00 0.00 32.08 6.13
5843 7502 1.079819 ATCTTGACCGCACTGTCCG 60.080 57.895 0.00 0.00 34.25 4.79
5872 7531 1.524008 CGCCCTCAAACCCTCAAACC 61.524 60.000 0.00 0.00 0.00 3.27
5873 7532 1.524008 CCGCCCTCAAACCCTCAAAC 61.524 60.000 0.00 0.00 0.00 2.93
5874 7533 1.228429 CCGCCCTCAAACCCTCAAA 60.228 57.895 0.00 0.00 0.00 2.69
5875 7534 2.150719 TCCGCCCTCAAACCCTCAA 61.151 57.895 0.00 0.00 0.00 3.02
5876 7535 2.528127 TCCGCCCTCAAACCCTCA 60.528 61.111 0.00 0.00 0.00 3.86
5877 7536 2.046217 GTCCGCCCTCAAACCCTC 60.046 66.667 0.00 0.00 0.00 4.30
5878 7537 3.647771 GGTCCGCCCTCAAACCCT 61.648 66.667 0.00 0.00 0.00 4.34
5918 7577 0.672401 CCGCTTGCTTCCGGTTTAGA 60.672 55.000 0.00 0.00 39.67 2.10
5920 7579 3.975246 CCGCTTGCTTCCGGTTTA 58.025 55.556 0.00 0.00 39.67 2.01
5980 7641 5.073144 AGGAATAGTTTTGGGTGAGTCAAGA 59.927 40.000 0.00 0.00 0.00 3.02
5985 7646 3.826729 GCAAGGAATAGTTTTGGGTGAGT 59.173 43.478 0.00 0.00 0.00 3.41
6021 7684 0.689055 ATGCTGAGTCACTTCAGGCA 59.311 50.000 5.11 5.11 43.80 4.75
6030 7693 5.016831 TCTAGAGTGGTAAATGCTGAGTCA 58.983 41.667 0.00 0.00 0.00 3.41
6055 7718 1.970917 GCAAGACAGCAATCCGGACG 61.971 60.000 6.12 1.26 0.00 4.79
6091 7754 2.029964 GGCAAGACAACGGTCCGA 59.970 61.111 20.51 0.00 45.48 4.55
6152 7817 1.820581 CGTCAGGCGGGAAAGGATA 59.179 57.895 0.00 0.00 36.85 2.59
6176 7841 3.436015 GCTCTAGAACGGTATCGATGCTA 59.564 47.826 13.38 0.00 40.11 3.49
6225 7890 2.889045 AGTAGTGGTCACGTTTGCTCTA 59.111 45.455 0.00 0.00 36.20 2.43
6232 7897 2.719426 GCACTAGTAGTGGTCACGTT 57.281 50.000 27.48 0.00 46.01 3.99
6241 7906 3.261897 ACTTCAATGCCAGCACTAGTAGT 59.738 43.478 0.00 0.00 0.00 2.73
6321 7986 6.734281 ACCCCTCTTTTGTACTCCTAATACTT 59.266 38.462 0.00 0.00 0.00 2.24
6331 7996 2.838813 GGCTCTACCCCTCTTTTGTACT 59.161 50.000 0.00 0.00 0.00 2.73
6359 8024 1.540363 CCGAGTGTTACACTTGTGCCT 60.540 52.381 25.66 1.72 45.44 4.75
6680 8361 4.564769 GCCGCAGAGCATTCTATATAAGTC 59.435 45.833 0.00 0.00 30.73 3.01
6681 8362 4.499183 GCCGCAGAGCATTCTATATAAGT 58.501 43.478 0.00 0.00 30.73 2.24
6696 8377 1.221840 GAATGAAGGAGGCCGCAGA 59.778 57.895 9.31 0.00 0.00 4.26
6698 8379 2.272146 GGAATGAAGGAGGCCGCA 59.728 61.111 9.31 0.00 0.00 5.69
6717 8398 3.887335 TTAACCACCCTGGCGACGC 62.887 63.158 12.43 12.43 42.67 5.19
6731 8412 3.676540 CATCGTGGGCGTTACAATTAAC 58.323 45.455 0.00 0.00 39.49 2.01
6734 8415 0.450184 GCATCGTGGGCGTTACAATT 59.550 50.000 0.00 0.00 39.49 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.