Multiple sequence alignment - TraesCS4D01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G123700 chr4D 100.000 3517 0 0 1 3517 108054001 108050485 0.000000e+00 6495.0
1 TraesCS4D01G123700 chr4D 97.674 258 6 0 108 365 108127515 108127258 8.960000e-121 444.0
2 TraesCS4D01G123700 chr4D 85.792 366 52 0 1 366 428521057 428521422 4.260000e-104 388.0
3 TraesCS4D01G123700 chr4D 85.326 368 51 1 1 365 179815081 179814714 9.220000e-101 377.0
4 TraesCS4D01G123700 chr4D 85.286 367 51 3 1 365 134362336 134361971 3.310000e-100 375.0
5 TraesCS4D01G123700 chr4D 96.429 56 2 0 3458 3513 16114388 16114443 3.740000e-15 93.5
6 TraesCS4D01G123700 chr5D 90.346 1823 117 31 904 2720 104625508 104627277 0.000000e+00 2337.0
7 TraesCS4D01G123700 chr5D 86.612 366 47 2 1 365 155890862 155890498 1.520000e-108 403.0
8 TraesCS4D01G123700 chr5D 92.105 38 3 0 1770 1807 104626432 104626469 2.000000e-03 54.7
9 TraesCS4D01G123700 chr5B 89.254 1824 131 33 904 2720 114425414 114427179 0.000000e+00 2222.0
10 TraesCS4D01G123700 chr5B 90.993 544 30 5 2977 3517 462256104 462256631 0.000000e+00 715.0
11 TraesCS4D01G123700 chr5B 85.792 366 49 3 1 365 107953629 107953992 5.510000e-103 385.0
12 TraesCS4D01G123700 chr5B 91.220 205 18 0 3313 3517 417884532 417884736 2.670000e-71 279.0
13 TraesCS4D01G123700 chr5B 96.396 111 2 2 3023 3132 656041283 656041174 7.760000e-42 182.0
14 TraesCS4D01G123700 chr4B 93.443 1464 69 13 390 1844 168565145 168566590 0.000000e+00 2146.0
15 TraesCS4D01G123700 chr4B 96.249 1013 25 3 1807 2815 168566516 168567519 0.000000e+00 1648.0
16 TraesCS4D01G123700 chr4B 83.221 447 69 6 998 1441 583081464 583081021 4.230000e-109 405.0
17 TraesCS4D01G123700 chr4B 85.286 367 52 2 1 366 621516089 621515724 9.220000e-101 377.0
18 TraesCS4D01G123700 chr4B 81.647 425 66 9 477 895 633957941 633957523 3.360000e-90 342.0
19 TraesCS4D01G123700 chr4B 81.473 421 63 11 477 889 468236897 468237310 7.280000e-87 331.0
20 TraesCS4D01G123700 chr4B 94.059 202 12 0 3316 3517 593157218 593157017 1.230000e-79 307.0
21 TraesCS4D01G123700 chr4B 95.161 62 3 0 2872 2933 168569571 168569632 8.030000e-17 99.0
22 TraesCS4D01G123700 chr4A 92.013 1490 64 23 366 1844 468207172 468208617 0.000000e+00 2041.0
23 TraesCS4D01G123700 chr4A 93.165 1068 47 7 1805 2846 468208541 468209608 0.000000e+00 1544.0
24 TraesCS4D01G123700 chr4A 81.647 425 63 11 477 893 577368810 577369227 4.350000e-89 339.0
25 TraesCS4D01G123700 chr4A 94.059 202 12 0 3316 3517 669864051 669863850 1.230000e-79 307.0
26 TraesCS4D01G123700 chr5A 92.012 964 69 5 904 1866 108281480 108280524 0.000000e+00 1347.0
27 TraesCS4D01G123700 chr5A 88.004 917 73 20 1808 2721 108280617 108279735 0.000000e+00 1050.0
28 TraesCS4D01G123700 chr5A 88.971 544 30 6 2977 3517 674166170 674166686 0.000000e+00 645.0
29 TraesCS4D01G123700 chr5A 94.146 205 12 0 3313 3517 531217771 531217975 2.640000e-81 313.0
30 TraesCS4D01G123700 chr5A 92.632 95 4 2 2857 2950 680518525 680518433 2.200000e-27 134.0
31 TraesCS4D01G123700 chr7A 91.042 547 30 5 2974 3517 120016022 120016552 0.000000e+00 721.0
32 TraesCS4D01G123700 chr1A 90.859 547 30 7 2975 3517 149124015 149123485 0.000000e+00 715.0
33 TraesCS4D01G123700 chr1A 91.579 95 3 3 2857 2950 162702044 162701954 3.690000e-25 126.0
34 TraesCS4D01G123700 chr6A 85.106 423 48 11 476 888 582085484 582085901 5.430000e-113 418.0
35 TraesCS4D01G123700 chr2D 86.104 367 51 0 1 367 404372659 404373025 2.540000e-106 396.0
36 TraesCS4D01G123700 chr2D 94.059 202 12 0 3316 3517 3576880 3576679 1.230000e-79 307.0
37 TraesCS4D01G123700 chr3B 85.559 367 51 2 1 366 432328497 432328862 1.980000e-102 383.0
38 TraesCS4D01G123700 chr3B 81.176 425 66 10 477 893 800636102 800636520 2.620000e-86 329.0
39 TraesCS4D01G123700 chr6B 82.477 428 61 12 478 898 620261006 620260586 2.580000e-96 363.0
40 TraesCS4D01G123700 chr3A 82.578 419 59 11 478 889 74212697 74212286 1.200000e-94 357.0
41 TraesCS4D01G123700 chr3A 91.579 95 3 3 2857 2950 34438525 34438435 3.690000e-25 126.0
42 TraesCS4D01G123700 chr7B 81.352 429 64 12 477 896 685399908 685400329 5.630000e-88 335.0
43 TraesCS4D01G123700 chr7B 89.474 95 5 3 2857 2950 172334738 172334648 7.980000e-22 115.0
44 TraesCS4D01G123700 chr2B 93.689 206 12 1 3313 3517 35123347 35123552 1.230000e-79 307.0
45 TraesCS4D01G123700 chr2B 90.526 95 4 3 2857 2950 2381084 2381174 1.710000e-23 121.0
46 TraesCS4D01G123700 chr7D 93.564 202 13 0 3316 3517 495707811 495707610 5.710000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G123700 chr4D 108050485 108054001 3516 True 6495.000000 6495 100.0000 1 3517 1 chr4D.!!$R1 3516
1 TraesCS4D01G123700 chr5D 104625508 104627277 1769 False 1195.850000 2337 91.2255 904 2720 2 chr5D.!!$F1 1816
2 TraesCS4D01G123700 chr5B 114425414 114427179 1765 False 2222.000000 2222 89.2540 904 2720 1 chr5B.!!$F2 1816
3 TraesCS4D01G123700 chr5B 462256104 462256631 527 False 715.000000 715 90.9930 2977 3517 1 chr5B.!!$F4 540
4 TraesCS4D01G123700 chr4B 168565145 168569632 4487 False 1297.666667 2146 94.9510 390 2933 3 chr4B.!!$F2 2543
5 TraesCS4D01G123700 chr4A 468207172 468209608 2436 False 1792.500000 2041 92.5890 366 2846 2 chr4A.!!$F2 2480
6 TraesCS4D01G123700 chr5A 108279735 108281480 1745 True 1198.500000 1347 90.0080 904 2721 2 chr5A.!!$R2 1817
7 TraesCS4D01G123700 chr5A 674166170 674166686 516 False 645.000000 645 88.9710 2977 3517 1 chr5A.!!$F2 540
8 TraesCS4D01G123700 chr7A 120016022 120016552 530 False 721.000000 721 91.0420 2974 3517 1 chr7A.!!$F1 543
9 TraesCS4D01G123700 chr1A 149123485 149124015 530 True 715.000000 715 90.8590 2975 3517 1 chr1A.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 871 0.037447 GCTTTTGGAGGCCTCTGTCT 59.963 55.000 31.36 0.0 0.0 3.41 F
1830 1881 1.143684 TGCCTGCTCTTCTGTTTTCCT 59.856 47.619 0.00 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2081 0.461961 AGGATCTTGTACTGGCGAGC 59.538 55.0 0.0 0.0 0.00 5.03 R
3127 5203 0.097150 GAGATGGGCGAAAAACGAGC 59.903 55.0 0.0 0.0 45.77 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.905249 GCTTTAGCCCTTCCCGTG 58.095 61.111 0.00 0.00 34.31 4.94
26 27 1.749258 GCTTTAGCCCTTCCCGTGG 60.749 63.158 0.00 0.00 34.31 4.94
33 34 4.760047 CCTTCCCGTGGCCGAGTG 62.760 72.222 0.00 0.00 35.63 3.51
34 35 4.003788 CTTCCCGTGGCCGAGTGT 62.004 66.667 0.00 0.00 35.63 3.55
35 36 3.934391 CTTCCCGTGGCCGAGTGTC 62.934 68.421 0.00 0.00 35.63 3.67
78 79 2.762875 GGTACCCGGGGTCTCCAG 60.763 72.222 27.92 0.00 37.09 3.86
79 80 2.762875 GTACCCGGGGTCTCCAGG 60.763 72.222 27.92 0.00 46.31 4.45
84 85 3.151022 CGGGGTCTCCAGGAGCTC 61.151 72.222 12.26 4.71 41.70 4.09
85 86 2.766229 GGGGTCTCCAGGAGCTCC 60.766 72.222 26.22 26.22 41.70 4.70
86 87 3.151022 GGGTCTCCAGGAGCTCCG 61.151 72.222 26.95 20.34 41.70 4.63
87 88 2.363147 GGTCTCCAGGAGCTCCGT 60.363 66.667 26.95 12.77 42.08 4.69
88 89 1.985116 GGTCTCCAGGAGCTCCGTT 60.985 63.158 26.95 8.04 42.08 4.44
89 90 1.513622 GTCTCCAGGAGCTCCGTTC 59.486 63.158 26.95 11.59 42.08 3.95
90 91 1.682684 TCTCCAGGAGCTCCGTTCC 60.683 63.158 26.95 3.65 42.08 3.62
91 92 1.684049 CTCCAGGAGCTCCGTTCCT 60.684 63.158 26.95 6.35 43.95 3.36
92 93 1.229209 TCCAGGAGCTCCGTTCCTT 60.229 57.895 26.95 5.52 40.30 3.36
93 94 1.219393 CCAGGAGCTCCGTTCCTTC 59.781 63.158 26.95 0.25 40.30 3.46
94 95 1.153745 CAGGAGCTCCGTTCCTTCG 60.154 63.158 26.95 5.70 40.30 3.79
95 96 1.606889 AGGAGCTCCGTTCCTTCGT 60.607 57.895 26.95 3.05 40.30 3.85
96 97 1.186267 AGGAGCTCCGTTCCTTCGTT 61.186 55.000 26.95 2.23 40.30 3.85
97 98 0.736672 GGAGCTCCGTTCCTTCGTTC 60.737 60.000 19.06 0.00 30.11 3.95
98 99 0.244178 GAGCTCCGTTCCTTCGTTCT 59.756 55.000 0.87 0.00 0.00 3.01
99 100 0.680061 AGCTCCGTTCCTTCGTTCTT 59.320 50.000 0.00 0.00 0.00 2.52
100 101 1.069255 GCTCCGTTCCTTCGTTCTTC 58.931 55.000 0.00 0.00 0.00 2.87
101 102 1.336980 GCTCCGTTCCTTCGTTCTTCT 60.337 52.381 0.00 0.00 0.00 2.85
102 103 2.597520 CTCCGTTCCTTCGTTCTTCTC 58.402 52.381 0.00 0.00 0.00 2.87
103 104 1.068748 TCCGTTCCTTCGTTCTTCTCG 60.069 52.381 0.00 0.00 0.00 4.04
104 105 1.335689 CCGTTCCTTCGTTCTTCTCGT 60.336 52.381 0.00 0.00 0.00 4.18
105 106 2.391879 CGTTCCTTCGTTCTTCTCGTT 58.608 47.619 0.00 0.00 0.00 3.85
106 107 2.404361 CGTTCCTTCGTTCTTCTCGTTC 59.596 50.000 0.00 0.00 0.00 3.95
107 108 2.719426 TCCTTCGTTCTTCTCGTTCC 57.281 50.000 0.00 0.00 0.00 3.62
108 109 1.271656 TCCTTCGTTCTTCTCGTTCCC 59.728 52.381 0.00 0.00 0.00 3.97
109 110 1.672145 CCTTCGTTCTTCTCGTTCCCC 60.672 57.143 0.00 0.00 0.00 4.81
110 111 1.272769 CTTCGTTCTTCTCGTTCCCCT 59.727 52.381 0.00 0.00 0.00 4.79
111 112 0.886563 TCGTTCTTCTCGTTCCCCTC 59.113 55.000 0.00 0.00 0.00 4.30
112 113 0.889306 CGTTCTTCTCGTTCCCCTCT 59.111 55.000 0.00 0.00 0.00 3.69
113 114 1.135344 CGTTCTTCTCGTTCCCCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
114 115 1.205179 GTTCTTCTCGTTCCCCTCTCC 59.795 57.143 0.00 0.00 0.00 3.71
115 116 0.324460 TCTTCTCGTTCCCCTCTCCC 60.324 60.000 0.00 0.00 0.00 4.30
116 117 0.324830 CTTCTCGTTCCCCTCTCCCT 60.325 60.000 0.00 0.00 0.00 4.20
117 118 0.324460 TTCTCGTTCCCCTCTCCCTC 60.324 60.000 0.00 0.00 0.00 4.30
118 119 1.758906 CTCGTTCCCCTCTCCCTCC 60.759 68.421 0.00 0.00 0.00 4.30
119 120 2.764547 CGTTCCCCTCTCCCTCCC 60.765 72.222 0.00 0.00 0.00 4.30
120 121 2.367107 GTTCCCCTCTCCCTCCCC 60.367 72.222 0.00 0.00 0.00 4.81
121 122 2.543637 TTCCCCTCTCCCTCCCCT 60.544 66.667 0.00 0.00 0.00 4.79
122 123 2.191846 TTCCCCTCTCCCTCCCCTT 61.192 63.158 0.00 0.00 0.00 3.95
123 124 2.367512 CCCCTCTCCCTCCCCTTG 60.368 72.222 0.00 0.00 0.00 3.61
124 125 3.093172 CCCTCTCCCTCCCCTTGC 61.093 72.222 0.00 0.00 0.00 4.01
125 126 2.041928 CCTCTCCCTCCCCTTGCT 59.958 66.667 0.00 0.00 0.00 3.91
126 127 2.069430 CCTCTCCCTCCCCTTGCTC 61.069 68.421 0.00 0.00 0.00 4.26
127 128 2.041265 TCTCCCTCCCCTTGCTCC 59.959 66.667 0.00 0.00 0.00 4.70
128 129 3.474570 CTCCCTCCCCTTGCTCCG 61.475 72.222 0.00 0.00 0.00 4.63
129 130 4.332543 TCCCTCCCCTTGCTCCGT 62.333 66.667 0.00 0.00 0.00 4.69
130 131 4.101448 CCCTCCCCTTGCTCCGTG 62.101 72.222 0.00 0.00 0.00 4.94
131 132 4.101448 CCTCCCCTTGCTCCGTGG 62.101 72.222 0.00 0.00 0.00 4.94
132 133 3.003173 CTCCCCTTGCTCCGTGGA 61.003 66.667 0.00 0.00 0.00 4.02
133 134 2.285368 TCCCCTTGCTCCGTGGAT 60.285 61.111 0.00 0.00 0.00 3.41
134 135 2.124570 CCCCTTGCTCCGTGGATG 60.125 66.667 0.00 0.00 0.00 3.51
135 136 2.825836 CCCTTGCTCCGTGGATGC 60.826 66.667 0.00 0.00 0.00 3.91
136 137 2.270205 CCTTGCTCCGTGGATGCT 59.730 61.111 10.32 0.00 0.00 3.79
137 138 1.817099 CCTTGCTCCGTGGATGCTC 60.817 63.158 10.32 0.00 0.00 4.26
138 139 2.125552 TTGCTCCGTGGATGCTCG 60.126 61.111 1.33 1.33 0.00 5.03
139 140 2.563050 CTTGCTCCGTGGATGCTCGA 62.563 60.000 10.40 0.00 0.00 4.04
140 141 2.279120 GCTCCGTGGATGCTCGAG 60.279 66.667 8.45 8.45 0.00 4.04
141 142 3.069980 GCTCCGTGGATGCTCGAGT 62.070 63.158 15.13 0.00 0.00 4.18
142 143 1.064946 CTCCGTGGATGCTCGAGTC 59.935 63.158 15.13 4.26 0.00 3.36
143 144 1.378646 TCCGTGGATGCTCGAGTCT 60.379 57.895 15.13 0.94 0.00 3.24
144 145 1.064946 CCGTGGATGCTCGAGTCTC 59.935 63.158 15.13 10.74 0.00 3.36
145 146 1.064946 CGTGGATGCTCGAGTCTCC 59.935 63.158 21.67 21.67 0.00 3.71
146 147 1.064946 GTGGATGCTCGAGTCTCCG 59.935 63.158 22.40 0.00 0.00 4.63
147 148 1.378646 TGGATGCTCGAGTCTCCGT 60.379 57.895 22.40 6.57 0.00 4.69
148 149 1.357334 GGATGCTCGAGTCTCCGTC 59.643 63.158 15.13 7.79 0.00 4.79
149 150 1.357334 GATGCTCGAGTCTCCGTCC 59.643 63.158 15.13 0.00 0.00 4.79
150 151 1.077357 ATGCTCGAGTCTCCGTCCT 60.077 57.895 15.13 0.00 0.00 3.85
151 152 1.098712 ATGCTCGAGTCTCCGTCCTC 61.099 60.000 15.13 0.00 0.00 3.71
152 153 1.450669 GCTCGAGTCTCCGTCCTCT 60.451 63.158 15.13 0.00 0.00 3.69
153 154 1.433837 GCTCGAGTCTCCGTCCTCTC 61.434 65.000 15.13 0.00 0.00 3.20
154 155 0.812412 CTCGAGTCTCCGTCCTCTCC 60.812 65.000 3.62 0.00 0.00 3.71
155 156 1.222387 CGAGTCTCCGTCCTCTCCT 59.778 63.158 0.00 0.00 0.00 3.69
156 157 0.393267 CGAGTCTCCGTCCTCTCCTT 60.393 60.000 0.00 0.00 0.00 3.36
157 158 1.385528 GAGTCTCCGTCCTCTCCTTC 58.614 60.000 0.00 0.00 0.00 3.46
158 159 0.996583 AGTCTCCGTCCTCTCCTTCT 59.003 55.000 0.00 0.00 0.00 2.85
159 160 1.064979 AGTCTCCGTCCTCTCCTTCTC 60.065 57.143 0.00 0.00 0.00 2.87
160 161 0.992695 TCTCCGTCCTCTCCTTCTCA 59.007 55.000 0.00 0.00 0.00 3.27
161 162 1.099689 CTCCGTCCTCTCCTTCTCAC 58.900 60.000 0.00 0.00 0.00 3.51
162 163 0.677098 TCCGTCCTCTCCTTCTCACG 60.677 60.000 0.00 0.00 0.00 4.35
163 164 0.677098 CCGTCCTCTCCTTCTCACGA 60.677 60.000 0.00 0.00 0.00 4.35
164 165 1.384525 CGTCCTCTCCTTCTCACGAT 58.615 55.000 0.00 0.00 0.00 3.73
165 166 1.332375 CGTCCTCTCCTTCTCACGATC 59.668 57.143 0.00 0.00 0.00 3.69
166 167 2.370349 GTCCTCTCCTTCTCACGATCA 58.630 52.381 0.00 0.00 0.00 2.92
167 168 2.955660 GTCCTCTCCTTCTCACGATCAT 59.044 50.000 0.00 0.00 0.00 2.45
168 169 3.004315 GTCCTCTCCTTCTCACGATCATC 59.996 52.174 0.00 0.00 0.00 2.92
169 170 3.117701 TCCTCTCCTTCTCACGATCATCT 60.118 47.826 0.00 0.00 0.00 2.90
170 171 3.636300 CCTCTCCTTCTCACGATCATCTT 59.364 47.826 0.00 0.00 0.00 2.40
171 172 4.261572 CCTCTCCTTCTCACGATCATCTTC 60.262 50.000 0.00 0.00 0.00 2.87
172 173 4.531854 TCTCCTTCTCACGATCATCTTCT 58.468 43.478 0.00 0.00 0.00 2.85
173 174 4.952957 TCTCCTTCTCACGATCATCTTCTT 59.047 41.667 0.00 0.00 0.00 2.52
174 175 5.003692 TCCTTCTCACGATCATCTTCTTG 57.996 43.478 0.00 0.00 0.00 3.02
175 176 4.118410 CCTTCTCACGATCATCTTCTTGG 58.882 47.826 0.00 0.00 0.00 3.61
176 177 4.382470 CCTTCTCACGATCATCTTCTTGGT 60.382 45.833 0.00 0.00 0.00 3.67
177 178 5.163509 CCTTCTCACGATCATCTTCTTGGTA 60.164 44.000 0.00 0.00 0.00 3.25
178 179 5.250235 TCTCACGATCATCTTCTTGGTAC 57.750 43.478 0.00 0.00 0.00 3.34
179 180 4.098044 TCTCACGATCATCTTCTTGGTACC 59.902 45.833 4.43 4.43 0.00 3.34
180 181 4.023980 TCACGATCATCTTCTTGGTACCT 58.976 43.478 14.36 0.00 0.00 3.08
181 182 5.198207 TCACGATCATCTTCTTGGTACCTA 58.802 41.667 14.36 4.36 0.00 3.08
182 183 5.655090 TCACGATCATCTTCTTGGTACCTAA 59.345 40.000 14.36 5.09 0.00 2.69
183 184 5.980116 CACGATCATCTTCTTGGTACCTAAG 59.020 44.000 14.36 14.43 0.00 2.18
184 185 5.892119 ACGATCATCTTCTTGGTACCTAAGA 59.108 40.000 20.15 20.15 32.64 2.10
185 186 6.380274 ACGATCATCTTCTTGGTACCTAAGAA 59.620 38.462 25.17 25.17 40.71 2.52
186 187 7.070074 ACGATCATCTTCTTGGTACCTAAGAAT 59.930 37.037 26.16 17.36 41.71 2.40
187 188 7.383572 CGATCATCTTCTTGGTACCTAAGAATG 59.616 40.741 26.16 23.16 41.71 2.67
188 189 6.349300 TCATCTTCTTGGTACCTAAGAATGC 58.651 40.000 26.16 0.00 41.71 3.56
189 190 5.755409 TCTTCTTGGTACCTAAGAATGCA 57.245 39.130 26.16 16.75 41.71 3.96
190 191 6.313519 TCTTCTTGGTACCTAAGAATGCAT 57.686 37.500 26.16 0.00 41.71 3.96
191 192 7.432148 TCTTCTTGGTACCTAAGAATGCATA 57.568 36.000 26.16 12.89 41.71 3.14
192 193 7.500992 TCTTCTTGGTACCTAAGAATGCATAG 58.499 38.462 26.16 18.56 41.71 2.23
193 194 5.611374 TCTTGGTACCTAAGAATGCATAGC 58.389 41.667 18.66 0.00 31.62 2.97
194 195 3.990092 TGGTACCTAAGAATGCATAGCG 58.010 45.455 14.36 0.00 0.00 4.26
195 196 3.639561 TGGTACCTAAGAATGCATAGCGA 59.360 43.478 14.36 0.00 0.00 4.93
196 197 4.238514 GGTACCTAAGAATGCATAGCGAG 58.761 47.826 4.06 0.00 0.00 5.03
197 198 4.262079 GGTACCTAAGAATGCATAGCGAGT 60.262 45.833 4.06 0.00 0.00 4.18
198 199 3.983741 ACCTAAGAATGCATAGCGAGTC 58.016 45.455 0.00 0.00 0.00 3.36
199 200 3.639094 ACCTAAGAATGCATAGCGAGTCT 59.361 43.478 0.00 0.00 0.00 3.24
200 201 4.233789 CCTAAGAATGCATAGCGAGTCTC 58.766 47.826 0.00 0.00 0.00 3.36
201 202 4.022416 CCTAAGAATGCATAGCGAGTCTCT 60.022 45.833 0.00 0.00 0.00 3.10
202 203 4.399004 AAGAATGCATAGCGAGTCTCTT 57.601 40.909 0.00 0.00 0.00 2.85
203 204 4.399004 AGAATGCATAGCGAGTCTCTTT 57.601 40.909 0.00 0.00 0.00 2.52
204 205 4.118410 AGAATGCATAGCGAGTCTCTTTG 58.882 43.478 0.00 0.00 0.00 2.77
205 206 3.808466 ATGCATAGCGAGTCTCTTTGA 57.192 42.857 0.00 0.00 0.00 2.69
206 207 3.156511 TGCATAGCGAGTCTCTTTGAG 57.843 47.619 4.94 0.00 0.00 3.02
207 208 2.159184 TGCATAGCGAGTCTCTTTGAGG 60.159 50.000 4.94 0.00 0.00 3.86
208 209 2.159170 GCATAGCGAGTCTCTTTGAGGT 60.159 50.000 4.94 0.00 0.00 3.85
209 210 3.066900 GCATAGCGAGTCTCTTTGAGGTA 59.933 47.826 4.94 0.00 0.00 3.08
210 211 4.791411 GCATAGCGAGTCTCTTTGAGGTAG 60.791 50.000 4.94 0.00 0.00 3.18
211 212 3.074675 AGCGAGTCTCTTTGAGGTAGA 57.925 47.619 0.00 0.00 0.00 2.59
212 213 3.422796 AGCGAGTCTCTTTGAGGTAGAA 58.577 45.455 0.00 0.00 0.00 2.10
213 214 3.191791 AGCGAGTCTCTTTGAGGTAGAAC 59.808 47.826 0.00 0.00 0.00 3.01
214 215 3.673866 GCGAGTCTCTTTGAGGTAGAACC 60.674 52.174 0.00 0.00 38.99 3.62
215 216 3.119424 CGAGTCTCTTTGAGGTAGAACCC 60.119 52.174 0.00 0.00 39.75 4.11
216 217 3.833070 GAGTCTCTTTGAGGTAGAACCCA 59.167 47.826 0.00 0.00 39.75 4.51
217 218 4.232091 AGTCTCTTTGAGGTAGAACCCAA 58.768 43.478 0.00 0.00 39.75 4.12
218 219 4.846940 AGTCTCTTTGAGGTAGAACCCAAT 59.153 41.667 0.00 0.00 39.75 3.16
219 220 5.310857 AGTCTCTTTGAGGTAGAACCCAATT 59.689 40.000 0.00 0.00 39.75 2.32
220 221 5.644206 GTCTCTTTGAGGTAGAACCCAATTC 59.356 44.000 0.00 0.00 39.75 2.17
222 223 5.805728 TCTTTGAGGTAGAACCCAATTCTC 58.194 41.667 0.00 0.00 44.99 2.87
223 224 5.309543 TCTTTGAGGTAGAACCCAATTCTCA 59.690 40.000 0.00 0.00 44.99 3.27
224 225 5.779241 TTGAGGTAGAACCCAATTCTCAT 57.221 39.130 0.00 0.00 44.99 2.90
225 226 5.102953 TGAGGTAGAACCCAATTCTCATG 57.897 43.478 0.00 0.00 44.99 3.07
226 227 4.536090 TGAGGTAGAACCCAATTCTCATGT 59.464 41.667 0.00 0.00 44.99 3.21
227 228 4.848357 AGGTAGAACCCAATTCTCATGTG 58.152 43.478 0.00 0.00 44.99 3.21
228 229 4.536090 AGGTAGAACCCAATTCTCATGTGA 59.464 41.667 0.00 0.00 44.99 3.58
229 230 5.014123 AGGTAGAACCCAATTCTCATGTGAA 59.986 40.000 12.28 12.28 44.99 3.18
230 231 5.888161 GGTAGAACCCAATTCTCATGTGAAT 59.112 40.000 15.55 15.55 44.99 2.57
231 232 6.378280 GGTAGAACCCAATTCTCATGTGAATT 59.622 38.462 23.54 23.54 44.99 2.17
232 233 6.923199 AGAACCCAATTCTCATGTGAATTT 57.077 33.333 25.64 15.56 44.99 1.82
233 234 6.694447 AGAACCCAATTCTCATGTGAATTTG 58.306 36.000 25.64 22.50 44.99 2.32
234 235 6.494491 AGAACCCAATTCTCATGTGAATTTGA 59.506 34.615 25.64 1.41 44.99 2.69
235 236 6.669125 ACCCAATTCTCATGTGAATTTGAA 57.331 33.333 25.64 7.50 42.63 2.69
236 237 7.248743 ACCCAATTCTCATGTGAATTTGAAT 57.751 32.000 25.64 14.81 42.63 2.57
237 238 7.101054 ACCCAATTCTCATGTGAATTTGAATG 58.899 34.615 25.64 17.58 42.63 2.67
238 239 6.537301 CCCAATTCTCATGTGAATTTGAATGG 59.463 38.462 25.64 23.13 42.63 3.16
239 240 7.324935 CCAATTCTCATGTGAATTTGAATGGA 58.675 34.615 25.64 0.00 42.63 3.41
240 241 7.491372 CCAATTCTCATGTGAATTTGAATGGAG 59.509 37.037 25.64 15.24 42.63 3.86
241 242 5.571784 TCTCATGTGAATTTGAATGGAGC 57.428 39.130 0.00 0.00 0.00 4.70
242 243 5.258841 TCTCATGTGAATTTGAATGGAGCT 58.741 37.500 0.00 0.00 0.00 4.09
243 244 5.356190 TCTCATGTGAATTTGAATGGAGCTC 59.644 40.000 4.71 4.71 0.00 4.09
244 245 4.095334 TCATGTGAATTTGAATGGAGCTCG 59.905 41.667 7.83 0.00 0.00 5.03
245 246 3.673902 TGTGAATTTGAATGGAGCTCGA 58.326 40.909 7.83 3.70 0.00 4.04
246 247 4.071423 TGTGAATTTGAATGGAGCTCGAA 58.929 39.130 7.83 0.00 0.00 3.71
247 248 4.154737 TGTGAATTTGAATGGAGCTCGAAG 59.845 41.667 7.83 0.00 0.00 3.79
248 249 4.393062 GTGAATTTGAATGGAGCTCGAAGA 59.607 41.667 7.83 0.00 0.00 2.87
263 264 3.775910 TCGAAGAGGAAGGAGTTAACCT 58.224 45.455 0.88 0.00 42.69 3.50
264 265 3.762823 TCGAAGAGGAAGGAGTTAACCTC 59.237 47.826 0.88 0.00 46.28 3.85
271 272 3.572604 AAGGAGTTAACCTCGTTCTCG 57.427 47.619 0.88 0.00 43.04 4.04
272 273 2.787994 AGGAGTTAACCTCGTTCTCGA 58.212 47.619 0.88 0.00 41.46 4.04
273 274 3.354467 AGGAGTTAACCTCGTTCTCGAT 58.646 45.455 0.88 0.00 45.21 3.59
274 275 3.128938 AGGAGTTAACCTCGTTCTCGATG 59.871 47.826 0.88 0.00 45.21 3.84
275 276 3.436496 GAGTTAACCTCGTTCTCGATGG 58.564 50.000 0.88 0.00 45.21 3.51
276 277 2.824341 AGTTAACCTCGTTCTCGATGGT 59.176 45.455 0.88 0.00 45.21 3.55
277 278 2.921754 GTTAACCTCGTTCTCGATGGTG 59.078 50.000 0.00 0.00 45.21 4.17
278 279 0.389948 AACCTCGTTCTCGATGGTGC 60.390 55.000 10.53 0.00 45.21 5.01
279 280 1.874019 CCTCGTTCTCGATGGTGCG 60.874 63.158 0.00 0.00 45.21 5.34
280 281 1.154016 CTCGTTCTCGATGGTGCGT 60.154 57.895 0.00 0.00 45.21 5.24
281 282 1.406219 CTCGTTCTCGATGGTGCGTG 61.406 60.000 0.00 0.00 45.21 5.34
282 283 2.778679 GTTCTCGATGGTGCGTGC 59.221 61.111 0.00 0.00 0.00 5.34
283 284 2.027073 GTTCTCGATGGTGCGTGCA 61.027 57.895 0.00 0.00 0.00 4.57
284 285 2.027073 TTCTCGATGGTGCGTGCAC 61.027 57.895 16.40 16.40 45.49 4.57
292 293 3.640000 GTGCGTGCACGTGCTCTT 61.640 61.111 37.59 0.00 42.66 2.85
293 294 3.639008 TGCGTGCACGTGCTCTTG 61.639 61.111 37.59 24.97 42.66 3.02
294 295 3.640000 GCGTGCACGTGCTCTTGT 61.640 61.111 37.59 0.00 42.66 3.16
295 296 2.546321 CGTGCACGTGCTCTTGTC 59.454 61.111 37.59 19.94 42.66 3.18
296 297 2.237066 CGTGCACGTGCTCTTGTCA 61.237 57.895 37.59 16.06 42.66 3.58
297 298 1.560004 CGTGCACGTGCTCTTGTCAT 61.560 55.000 37.59 0.00 42.66 3.06
298 299 0.588252 GTGCACGTGCTCTTGTCATT 59.412 50.000 37.59 0.00 42.66 2.57
299 300 0.587768 TGCACGTGCTCTTGTCATTG 59.412 50.000 37.59 0.00 42.66 2.82
300 301 0.110056 GCACGTGCTCTTGTCATTGG 60.110 55.000 32.55 0.00 38.21 3.16
301 302 1.229428 CACGTGCTCTTGTCATTGGT 58.771 50.000 0.82 0.00 0.00 3.67
302 303 1.195448 CACGTGCTCTTGTCATTGGTC 59.805 52.381 0.82 0.00 0.00 4.02
303 304 0.798776 CGTGCTCTTGTCATTGGTCC 59.201 55.000 0.00 0.00 0.00 4.46
304 305 1.609061 CGTGCTCTTGTCATTGGTCCT 60.609 52.381 0.00 0.00 0.00 3.85
305 306 2.079925 GTGCTCTTGTCATTGGTCCTC 58.920 52.381 0.00 0.00 0.00 3.71
306 307 1.980765 TGCTCTTGTCATTGGTCCTCT 59.019 47.619 0.00 0.00 0.00 3.69
307 308 2.027745 TGCTCTTGTCATTGGTCCTCTC 60.028 50.000 0.00 0.00 0.00 3.20
308 309 2.886081 CTCTTGTCATTGGTCCTCTCG 58.114 52.381 0.00 0.00 0.00 4.04
309 310 1.550524 TCTTGTCATTGGTCCTCTCGG 59.449 52.381 0.00 0.00 0.00 4.63
310 311 1.276421 CTTGTCATTGGTCCTCTCGGT 59.724 52.381 0.00 0.00 0.00 4.69
311 312 0.608130 TGTCATTGGTCCTCTCGGTG 59.392 55.000 0.00 0.00 0.00 4.94
312 313 0.741221 GTCATTGGTCCTCTCGGTGC 60.741 60.000 0.00 0.00 0.00 5.01
313 314 0.904865 TCATTGGTCCTCTCGGTGCT 60.905 55.000 0.00 0.00 0.00 4.40
314 315 0.824109 CATTGGTCCTCTCGGTGCTA 59.176 55.000 0.00 0.00 0.00 3.49
315 316 1.115467 ATTGGTCCTCTCGGTGCTAG 58.885 55.000 0.00 0.00 0.00 3.42
316 317 1.605058 TTGGTCCTCTCGGTGCTAGC 61.605 60.000 8.10 8.10 0.00 3.42
317 318 2.052690 GGTCCTCTCGGTGCTAGCA 61.053 63.158 14.93 14.93 0.00 3.49
318 319 1.435515 GTCCTCTCGGTGCTAGCAG 59.564 63.158 20.03 7.76 0.00 4.24
319 320 1.000771 TCCTCTCGGTGCTAGCAGT 60.001 57.895 20.03 0.00 0.00 4.40
320 321 1.140589 CCTCTCGGTGCTAGCAGTG 59.859 63.158 20.03 13.80 0.00 3.66
321 322 1.140589 CTCTCGGTGCTAGCAGTGG 59.859 63.158 20.03 10.45 0.00 4.00
322 323 1.599606 CTCTCGGTGCTAGCAGTGGT 61.600 60.000 20.03 0.00 0.00 4.16
323 324 1.446792 CTCGGTGCTAGCAGTGGTG 60.447 63.158 20.03 7.41 0.00 4.17
324 325 1.877576 CTCGGTGCTAGCAGTGGTGA 61.878 60.000 20.03 10.53 0.00 4.02
325 326 1.219124 CGGTGCTAGCAGTGGTGAT 59.781 57.895 20.03 0.00 0.00 3.06
326 327 1.086067 CGGTGCTAGCAGTGGTGATG 61.086 60.000 20.03 0.00 0.00 3.07
327 328 0.745845 GGTGCTAGCAGTGGTGATGG 60.746 60.000 20.03 0.00 0.00 3.51
328 329 0.250234 GTGCTAGCAGTGGTGATGGA 59.750 55.000 20.03 0.00 0.00 3.41
329 330 0.538584 TGCTAGCAGTGGTGATGGAG 59.461 55.000 14.93 0.00 0.00 3.86
330 331 0.826715 GCTAGCAGTGGTGATGGAGA 59.173 55.000 10.63 0.00 0.00 3.71
331 332 1.202510 GCTAGCAGTGGTGATGGAGAG 60.203 57.143 10.63 0.00 0.00 3.20
332 333 2.106566 CTAGCAGTGGTGATGGAGAGT 58.893 52.381 4.76 0.00 0.00 3.24
333 334 0.901124 AGCAGTGGTGATGGAGAGTC 59.099 55.000 0.00 0.00 0.00 3.36
334 335 0.107945 GCAGTGGTGATGGAGAGTCC 60.108 60.000 0.00 0.00 36.96 3.85
335 336 0.174389 CAGTGGTGATGGAGAGTCCG 59.826 60.000 0.00 0.00 40.17 4.79
336 337 0.251832 AGTGGTGATGGAGAGTCCGT 60.252 55.000 0.00 0.00 40.17 4.69
337 338 0.108615 GTGGTGATGGAGAGTCCGTG 60.109 60.000 0.00 0.00 40.17 4.94
338 339 0.541998 TGGTGATGGAGAGTCCGTGT 60.542 55.000 0.00 0.00 40.17 4.49
339 340 0.108615 GGTGATGGAGAGTCCGTGTG 60.109 60.000 0.00 0.00 40.17 3.82
340 341 0.108615 GTGATGGAGAGTCCGTGTGG 60.109 60.000 0.00 0.00 40.17 4.17
341 342 1.257750 TGATGGAGAGTCCGTGTGGG 61.258 60.000 0.00 0.00 40.17 4.61
342 343 1.229209 ATGGAGAGTCCGTGTGGGT 60.229 57.895 0.00 0.00 40.17 4.51
343 344 1.544825 ATGGAGAGTCCGTGTGGGTG 61.545 60.000 0.00 0.00 40.17 4.61
344 345 2.657237 GAGAGTCCGTGTGGGTGG 59.343 66.667 0.00 0.00 37.00 4.61
345 346 2.122989 AGAGTCCGTGTGGGTGGT 60.123 61.111 0.00 0.00 37.00 4.16
346 347 2.156051 GAGAGTCCGTGTGGGTGGTC 62.156 65.000 0.00 0.00 37.00 4.02
347 348 3.569049 GAGTCCGTGTGGGTGGTCG 62.569 68.421 0.00 0.00 37.00 4.79
348 349 3.608662 GTCCGTGTGGGTGGTCGA 61.609 66.667 0.00 0.00 37.00 4.20
349 350 3.299977 TCCGTGTGGGTGGTCGAG 61.300 66.667 0.00 0.00 37.00 4.04
350 351 4.373116 CCGTGTGGGTGGTCGAGG 62.373 72.222 0.00 0.00 0.00 4.63
351 352 4.373116 CGTGTGGGTGGTCGAGGG 62.373 72.222 0.00 0.00 0.00 4.30
352 353 2.920912 GTGTGGGTGGTCGAGGGA 60.921 66.667 0.00 0.00 0.00 4.20
353 354 2.121832 TGTGGGTGGTCGAGGGAT 59.878 61.111 0.00 0.00 0.00 3.85
354 355 2.290287 TGTGGGTGGTCGAGGGATG 61.290 63.158 0.00 0.00 0.00 3.51
355 356 3.399181 TGGGTGGTCGAGGGATGC 61.399 66.667 0.00 0.00 0.00 3.91
356 357 3.083997 GGGTGGTCGAGGGATGCT 61.084 66.667 0.00 0.00 0.00 3.79
357 358 2.501610 GGTGGTCGAGGGATGCTC 59.498 66.667 0.00 0.00 0.00 4.26
358 359 2.501610 GTGGTCGAGGGATGCTCC 59.498 66.667 0.00 0.00 35.23 4.70
359 360 2.038813 TGGTCGAGGGATGCTCCA 59.961 61.111 4.85 0.00 38.64 3.86
360 361 2.359169 TGGTCGAGGGATGCTCCAC 61.359 63.158 4.85 0.00 38.64 4.02
361 362 2.359169 GGTCGAGGGATGCTCCACA 61.359 63.158 4.85 0.00 38.64 4.17
362 363 1.690219 GGTCGAGGGATGCTCCACAT 61.690 60.000 4.85 0.00 43.54 3.21
392 393 4.987832 ACTCAACATGTCTAGAGTTAGCG 58.012 43.478 17.77 1.37 38.08 4.26
407 408 2.450609 TAGCGTGTCTCAAAGGGAAC 57.549 50.000 0.00 0.00 0.00 3.62
422 423 4.032960 AGGGAACACAACAATGCTATGA 57.967 40.909 0.00 0.00 0.00 2.15
432 433 4.240881 ACAATGCTATGATGGGAACTGT 57.759 40.909 0.00 0.00 0.00 3.55
504 509 1.817099 GAGGCCGAACTCCATGCAG 60.817 63.158 0.00 0.00 0.00 4.41
517 522 5.022787 ACTCCATGCAGCCCTTTATTTTTA 58.977 37.500 0.00 0.00 0.00 1.52
674 681 6.932356 TCATTGACTTTGAGGATGAATAGC 57.068 37.500 0.00 0.00 0.00 2.97
855 867 2.315720 AAATGCTTTTGGAGGCCTCT 57.684 45.000 31.36 6.90 0.00 3.69
856 868 1.553706 AATGCTTTTGGAGGCCTCTG 58.446 50.000 31.36 16.89 0.00 3.35
858 870 0.250901 TGCTTTTGGAGGCCTCTGTC 60.251 55.000 31.36 16.17 0.00 3.51
859 871 0.037447 GCTTTTGGAGGCCTCTGTCT 59.963 55.000 31.36 0.00 0.00 3.41
860 872 1.279271 GCTTTTGGAGGCCTCTGTCTA 59.721 52.381 31.36 10.00 0.00 2.59
861 873 2.937433 GCTTTTGGAGGCCTCTGTCTAC 60.937 54.545 31.36 14.67 0.00 2.59
967 982 2.272146 CCACCCATTCCCCTCACG 59.728 66.667 0.00 0.00 0.00 4.35
1137 1152 2.338620 CTCAAGGGCGTCGTCACA 59.661 61.111 0.00 0.00 0.00 3.58
1462 1477 5.310857 AGGTACTGTTCCTTTTCCTCTCAAT 59.689 40.000 0.00 0.00 37.18 2.57
1553 1568 1.663643 GCTTTATGTGATTCGCGGTGA 59.336 47.619 6.13 0.00 0.00 4.02
1554 1569 2.536928 GCTTTATGTGATTCGCGGTGAC 60.537 50.000 6.13 0.01 0.00 3.67
1587 1602 6.782298 AATGCTCATAGTTCGATCTGAATG 57.218 37.500 6.25 3.49 39.21 2.67
1628 1643 4.931601 TCTGATATGCGTGATTTAGATGCC 59.068 41.667 0.00 0.00 0.00 4.40
1776 1792 2.857748 TCTGCAACAGTTACGATATGCG 59.142 45.455 0.00 0.00 38.19 4.73
1813 1864 4.284490 TCCTAGAACTGGACATGATATGCC 59.716 45.833 0.00 0.00 0.00 4.40
1817 1868 1.773052 ACTGGACATGATATGCCTGCT 59.227 47.619 0.00 0.00 32.71 4.24
1818 1869 2.224475 ACTGGACATGATATGCCTGCTC 60.224 50.000 0.00 0.00 32.71 4.26
1819 1870 2.038689 CTGGACATGATATGCCTGCTCT 59.961 50.000 0.00 0.00 0.00 4.09
1820 1871 2.440627 TGGACATGATATGCCTGCTCTT 59.559 45.455 0.00 0.00 0.00 2.85
1821 1872 3.072944 GGACATGATATGCCTGCTCTTC 58.927 50.000 0.00 0.00 0.00 2.87
1822 1873 3.244491 GGACATGATATGCCTGCTCTTCT 60.244 47.826 0.00 0.00 0.00 2.85
1823 1874 3.741249 ACATGATATGCCTGCTCTTCTG 58.259 45.455 0.00 0.00 0.00 3.02
1824 1875 3.136077 ACATGATATGCCTGCTCTTCTGT 59.864 43.478 0.00 0.00 0.00 3.41
1825 1876 3.920231 TGATATGCCTGCTCTTCTGTT 57.080 42.857 0.00 0.00 0.00 3.16
1826 1877 4.226427 TGATATGCCTGCTCTTCTGTTT 57.774 40.909 0.00 0.00 0.00 2.83
1827 1878 4.592942 TGATATGCCTGCTCTTCTGTTTT 58.407 39.130 0.00 0.00 0.00 2.43
1828 1879 4.637534 TGATATGCCTGCTCTTCTGTTTTC 59.362 41.667 0.00 0.00 0.00 2.29
1829 1880 1.609208 TGCCTGCTCTTCTGTTTTCC 58.391 50.000 0.00 0.00 0.00 3.13
1830 1881 1.143684 TGCCTGCTCTTCTGTTTTCCT 59.856 47.619 0.00 0.00 0.00 3.36
1831 1882 2.371841 TGCCTGCTCTTCTGTTTTCCTA 59.628 45.455 0.00 0.00 0.00 2.94
1832 1883 3.006247 GCCTGCTCTTCTGTTTTCCTAG 58.994 50.000 0.00 0.00 0.00 3.02
1833 1884 3.307059 GCCTGCTCTTCTGTTTTCCTAGA 60.307 47.826 0.00 0.00 0.00 2.43
1834 1885 4.804261 GCCTGCTCTTCTGTTTTCCTAGAA 60.804 45.833 0.00 0.00 0.00 2.10
1835 1886 4.693095 CCTGCTCTTCTGTTTTCCTAGAAC 59.307 45.833 0.00 0.00 0.00 3.01
1836 1887 5.512232 CCTGCTCTTCTGTTTTCCTAGAACT 60.512 44.000 0.00 0.00 0.00 3.01
1837 1888 5.300752 TGCTCTTCTGTTTTCCTAGAACTG 58.699 41.667 0.00 0.00 0.00 3.16
1838 1889 4.693095 GCTCTTCTGTTTTCCTAGAACTGG 59.307 45.833 0.00 0.00 0.00 4.00
1839 1890 5.511545 GCTCTTCTGTTTTCCTAGAACTGGA 60.512 44.000 0.00 0.00 0.00 3.86
1840 1891 5.855045 TCTTCTGTTTTCCTAGAACTGGAC 58.145 41.667 0.00 0.00 32.65 4.02
1841 1892 5.365605 TCTTCTGTTTTCCTAGAACTGGACA 59.634 40.000 0.00 0.00 32.65 4.02
1842 1893 5.825593 TCTGTTTTCCTAGAACTGGACAT 57.174 39.130 0.00 0.00 32.65 3.06
1843 1894 5.551233 TCTGTTTTCCTAGAACTGGACATG 58.449 41.667 0.00 0.00 32.65 3.21
1844 1895 5.306937 TCTGTTTTCCTAGAACTGGACATGA 59.693 40.000 0.00 0.00 32.65 3.07
1845 1896 6.013379 TCTGTTTTCCTAGAACTGGACATGAT 60.013 38.462 0.00 0.00 32.65 2.45
1846 1897 7.180229 TCTGTTTTCCTAGAACTGGACATGATA 59.820 37.037 0.00 0.00 32.65 2.15
1847 1898 7.861629 TGTTTTCCTAGAACTGGACATGATAT 58.138 34.615 0.00 0.00 32.65 1.63
1848 1899 7.770433 TGTTTTCCTAGAACTGGACATGATATG 59.230 37.037 0.00 0.00 32.65 1.78
1849 1900 5.474578 TCCTAGAACTGGACATGATATGC 57.525 43.478 0.00 0.00 0.00 3.14
1850 1901 5.150715 TCCTAGAACTGGACATGATATGCT 58.849 41.667 0.00 0.00 0.00 3.79
1851 1902 5.604231 TCCTAGAACTGGACATGATATGCTT 59.396 40.000 0.00 0.00 0.00 3.91
1852 1903 5.699915 CCTAGAACTGGACATGATATGCTTG 59.300 44.000 0.00 0.00 0.00 4.01
1853 1904 3.881688 AGAACTGGACATGATATGCTTGC 59.118 43.478 0.00 0.00 0.00 4.01
1869 1920 5.620738 TGCTTGCTCTTCTGTTATCCTAT 57.379 39.130 0.00 0.00 0.00 2.57
2027 2081 7.729116 ACAAGGGCCATTTCTTATTATCATTG 58.271 34.615 6.18 0.00 0.00 2.82
2030 2085 6.210185 AGGGCCATTTCTTATTATCATTGCTC 59.790 38.462 6.18 0.00 0.00 4.26
2032 2087 5.570589 GCCATTTCTTATTATCATTGCTCGC 59.429 40.000 0.00 0.00 0.00 5.03
2092 2147 7.598278 TGATTGGCGTATCTTTGTTTATGTTT 58.402 30.769 1.85 0.00 0.00 2.83
2121 2176 6.363167 TGGCCTGATTCTTTTGATGAATTT 57.637 33.333 3.32 0.00 34.67 1.82
2151 2207 6.857964 GCTGCACAAATATTAAGACGCATTAT 59.142 34.615 0.00 0.00 0.00 1.28
2186 2242 1.835693 CAGGATCAAGCTCCCCTCC 59.164 63.158 0.00 0.00 35.79 4.30
2628 2684 7.066645 GGTACTTTGGTAACCTGGTGATATTTC 59.933 40.741 0.00 0.00 29.85 2.17
2674 2730 5.814705 GTCTGGATTCTTCAGTCCACATAAG 59.185 44.000 0.00 0.00 39.51 1.73
2757 2838 4.677673 TTAGCTCTATTGCTGCATCTCA 57.322 40.909 1.84 0.00 43.87 3.27
2859 3112 2.697229 TGAGCGTCAGGAATGAGATGAT 59.303 45.455 0.00 0.00 0.00 2.45
2861 3114 2.964464 AGCGTCAGGAATGAGATGATCT 59.036 45.455 0.00 0.00 0.00 2.75
2862 3115 3.387374 AGCGTCAGGAATGAGATGATCTT 59.613 43.478 0.00 0.00 0.00 2.40
2934 5010 1.827969 ACGGGAGTTGAGAGAGATTGG 59.172 52.381 0.00 0.00 43.33 3.16
2935 5011 1.827969 CGGGAGTTGAGAGAGATTGGT 59.172 52.381 0.00 0.00 0.00 3.67
2936 5012 2.417924 CGGGAGTTGAGAGAGATTGGTG 60.418 54.545 0.00 0.00 0.00 4.17
2937 5013 2.834549 GGGAGTTGAGAGAGATTGGTGA 59.165 50.000 0.00 0.00 0.00 4.02
2938 5014 3.368948 GGGAGTTGAGAGAGATTGGTGAC 60.369 52.174 0.00 0.00 0.00 3.67
2939 5015 3.259374 GGAGTTGAGAGAGATTGGTGACA 59.741 47.826 0.00 0.00 39.83 3.58
2940 5016 4.493547 GAGTTGAGAGAGATTGGTGACAG 58.506 47.826 0.00 0.00 44.54 3.51
2941 5017 3.900601 AGTTGAGAGAGATTGGTGACAGT 59.099 43.478 0.00 0.00 44.54 3.55
2942 5018 5.080337 AGTTGAGAGAGATTGGTGACAGTA 58.920 41.667 0.00 0.00 44.54 2.74
2943 5019 5.184864 AGTTGAGAGAGATTGGTGACAGTAG 59.815 44.000 0.00 0.00 44.54 2.57
2944 5020 3.445450 TGAGAGAGATTGGTGACAGTAGC 59.555 47.826 0.00 0.00 44.54 3.58
2945 5021 3.435275 AGAGAGATTGGTGACAGTAGCA 58.565 45.455 0.00 0.00 44.54 3.49
2946 5022 3.194542 AGAGAGATTGGTGACAGTAGCAC 59.805 47.826 0.00 0.00 44.54 4.40
2947 5023 3.169099 AGAGATTGGTGACAGTAGCACT 58.831 45.455 0.00 0.00 44.54 4.40
2948 5024 4.344978 AGAGATTGGTGACAGTAGCACTA 58.655 43.478 0.00 0.00 44.54 2.74
2949 5025 4.400884 AGAGATTGGTGACAGTAGCACTAG 59.599 45.833 0.00 0.00 44.54 2.57
2950 5026 3.449018 AGATTGGTGACAGTAGCACTAGG 59.551 47.826 0.00 0.00 44.54 3.02
2951 5027 2.597578 TGGTGACAGTAGCACTAGGA 57.402 50.000 0.00 0.00 36.53 2.94
2952 5028 3.101643 TGGTGACAGTAGCACTAGGAT 57.898 47.619 0.00 0.00 36.53 3.24
2953 5029 3.024547 TGGTGACAGTAGCACTAGGATC 58.975 50.000 0.00 0.00 36.53 3.36
2954 5030 2.362717 GGTGACAGTAGCACTAGGATCC 59.637 54.545 2.48 2.48 36.53 3.36
2955 5031 2.362717 GTGACAGTAGCACTAGGATCCC 59.637 54.545 8.55 0.00 33.57 3.85
2956 5032 2.245028 TGACAGTAGCACTAGGATCCCT 59.755 50.000 8.55 0.00 37.71 4.20
2957 5033 2.888414 GACAGTAGCACTAGGATCCCTC 59.112 54.545 8.55 0.00 34.61 4.30
2958 5034 2.243810 CAGTAGCACTAGGATCCCTCC 58.756 57.143 8.55 0.00 42.43 4.30
2966 5042 3.893324 GGATCCCTCCTAGTGGGC 58.107 66.667 11.97 1.48 44.23 5.36
2967 5043 1.237458 GGATCCCTCCTAGTGGGCT 59.763 63.158 11.97 4.04 44.23 5.19
2968 5044 0.400670 GGATCCCTCCTAGTGGGCTT 60.401 60.000 11.97 3.88 44.23 4.35
2969 5045 1.512735 GATCCCTCCTAGTGGGCTTT 58.487 55.000 11.97 1.83 44.23 3.51
2970 5046 2.690840 GATCCCTCCTAGTGGGCTTTA 58.309 52.381 11.97 0.00 44.23 1.85
2971 5047 2.889522 TCCCTCCTAGTGGGCTTTAT 57.110 50.000 11.97 0.00 44.23 1.40
2972 5048 3.145559 TCCCTCCTAGTGGGCTTTATT 57.854 47.619 11.97 0.00 44.23 1.40
2973 5049 4.289837 TCCCTCCTAGTGGGCTTTATTA 57.710 45.455 11.97 0.00 44.23 0.98
3043 5119 4.278956 CTCGCTAACGGGCTTTGT 57.721 55.556 0.00 0.00 40.63 2.83
3112 5188 3.380637 TCTTCTTCGTCTTATCTTCCCCG 59.619 47.826 0.00 0.00 0.00 5.73
3114 5190 2.686915 TCTTCGTCTTATCTTCCCCGAC 59.313 50.000 0.00 0.00 0.00 4.79
3123 5199 1.227823 CTTCCCCGACACAACAGCA 60.228 57.895 0.00 0.00 0.00 4.41
3127 5203 2.390599 CCCGACACAACAGCATCCG 61.391 63.158 0.00 0.00 0.00 4.18
3138 5214 4.342964 GCATCCGCTCGTTTTTCG 57.657 55.556 0.00 0.00 41.41 3.46
3166 5242 3.527665 CTCTTTCCTCCCAAATCCCCTTA 59.472 47.826 0.00 0.00 0.00 2.69
3176 5252 3.118223 CCAAATCCCCTTACTCCAGACTC 60.118 52.174 0.00 0.00 0.00 3.36
3194 5273 2.587080 CCAAGCCATGGTCAAGCAT 58.413 52.632 14.67 0.00 44.85 3.79
3329 5408 2.047939 GCAACCTGCACAATGGCC 60.048 61.111 0.00 0.00 44.26 5.36
3347 5426 3.133464 AATCGACGGTCGGCGGTA 61.133 61.111 28.07 10.80 40.18 4.02
3350 5429 3.195002 CGACGGTCGGCGGTACTA 61.195 66.667 22.18 0.00 43.98 1.82
3351 5430 2.405191 GACGGTCGGCGGTACTAC 59.595 66.667 7.21 0.00 0.00 2.73
3352 5431 2.359850 ACGGTCGGCGGTACTACA 60.360 61.111 7.21 0.00 0.00 2.74
3353 5432 1.922135 GACGGTCGGCGGTACTACAA 61.922 60.000 7.21 0.00 0.00 2.41
3354 5433 1.315257 ACGGTCGGCGGTACTACAAT 61.315 55.000 7.21 0.00 0.00 2.71
3355 5434 0.593263 CGGTCGGCGGTACTACAATC 60.593 60.000 7.21 0.00 0.00 2.67
3356 5435 0.593263 GGTCGGCGGTACTACAATCG 60.593 60.000 7.21 0.00 0.00 3.34
3357 5436 0.593263 GTCGGCGGTACTACAATCGG 60.593 60.000 7.21 0.00 0.00 4.18
3358 5437 1.947642 CGGCGGTACTACAATCGGC 60.948 63.158 0.00 3.92 43.22 5.54
3359 5438 1.947642 GGCGGTACTACAATCGGCG 60.948 63.158 0.00 0.00 38.31 6.46
3360 5439 1.947642 GCGGTACTACAATCGGCGG 60.948 63.158 7.21 0.00 0.00 6.13
3361 5440 1.434696 CGGTACTACAATCGGCGGT 59.565 57.895 7.21 0.00 0.00 5.68
3362 5441 0.593263 CGGTACTACAATCGGCGGTC 60.593 60.000 7.21 0.00 0.00 4.79
3363 5442 0.593263 GGTACTACAATCGGCGGTCG 60.593 60.000 7.21 0.00 40.90 4.79
3423 5502 1.340889 AGCGATGCAAAAAGCTGGAAA 59.659 42.857 7.59 0.00 45.94 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.749258 CCACGGGAAGGGCTAAAGC 60.749 63.158 0.00 0.00 41.14 3.51
9 10 1.749258 GCCACGGGAAGGGCTAAAG 60.749 63.158 0.00 0.00 46.74 1.85
10 11 2.353573 GCCACGGGAAGGGCTAAA 59.646 61.111 0.00 0.00 46.74 1.85
16 17 4.760047 CACTCGGCCACGGGAAGG 62.760 72.222 2.24 0.00 45.57 3.46
17 18 3.934391 GACACTCGGCCACGGGAAG 62.934 68.421 2.24 0.00 45.57 3.46
18 19 3.998672 GACACTCGGCCACGGGAA 61.999 66.667 2.24 0.00 45.57 3.97
66 67 4.787280 AGCTCCTGGAGACCCCGG 62.787 72.222 27.53 0.00 41.19 5.73
67 68 3.151022 GAGCTCCTGGAGACCCCG 61.151 72.222 27.53 0.53 37.93 5.73
68 69 2.766229 GGAGCTCCTGGAGACCCC 60.766 72.222 27.53 18.48 0.00 4.95
69 70 3.151022 CGGAGCTCCTGGAGACCC 61.151 72.222 29.73 22.55 0.00 4.46
70 71 1.950973 GAACGGAGCTCCTGGAGACC 61.951 65.000 29.73 24.29 0.00 3.85
71 72 1.513622 GAACGGAGCTCCTGGAGAC 59.486 63.158 29.73 18.24 0.00 3.36
72 73 1.682684 GGAACGGAGCTCCTGGAGA 60.683 63.158 29.73 0.00 40.17 3.71
73 74 2.896443 GGAACGGAGCTCCTGGAG 59.104 66.667 29.73 19.55 40.17 3.86
78 79 0.736672 GAACGAAGGAACGGAGCTCC 60.737 60.000 23.79 23.79 44.48 4.70
79 80 0.244178 AGAACGAAGGAACGGAGCTC 59.756 55.000 4.71 4.71 37.61 4.09
80 81 0.680061 AAGAACGAAGGAACGGAGCT 59.320 50.000 0.00 0.00 37.61 4.09
81 82 1.069255 GAAGAACGAAGGAACGGAGC 58.931 55.000 0.00 0.00 37.61 4.70
82 83 2.597520 GAGAAGAACGAAGGAACGGAG 58.402 52.381 0.00 0.00 37.61 4.63
83 84 1.068748 CGAGAAGAACGAAGGAACGGA 60.069 52.381 0.00 0.00 37.61 4.69
84 85 1.335689 ACGAGAAGAACGAAGGAACGG 60.336 52.381 0.00 0.00 37.61 4.44
85 86 2.047679 ACGAGAAGAACGAAGGAACG 57.952 50.000 0.00 0.00 39.31 3.95
86 87 2.730404 GGAACGAGAAGAACGAAGGAAC 59.270 50.000 0.00 0.00 34.70 3.62
87 88 2.288640 GGGAACGAGAAGAACGAAGGAA 60.289 50.000 0.00 0.00 34.70 3.36
88 89 1.271656 GGGAACGAGAAGAACGAAGGA 59.728 52.381 0.00 0.00 34.70 3.36
89 90 1.672145 GGGGAACGAGAAGAACGAAGG 60.672 57.143 0.00 0.00 34.70 3.46
90 91 1.272769 AGGGGAACGAGAAGAACGAAG 59.727 52.381 0.00 0.00 34.70 3.79
91 92 1.271656 GAGGGGAACGAGAAGAACGAA 59.728 52.381 0.00 0.00 34.70 3.85
92 93 0.886563 GAGGGGAACGAGAAGAACGA 59.113 55.000 0.00 0.00 34.70 3.85
93 94 0.889306 AGAGGGGAACGAGAAGAACG 59.111 55.000 0.00 0.00 0.00 3.95
94 95 1.205179 GGAGAGGGGAACGAGAAGAAC 59.795 57.143 0.00 0.00 0.00 3.01
95 96 1.558233 GGAGAGGGGAACGAGAAGAA 58.442 55.000 0.00 0.00 0.00 2.52
96 97 0.324460 GGGAGAGGGGAACGAGAAGA 60.324 60.000 0.00 0.00 0.00 2.87
97 98 0.324830 AGGGAGAGGGGAACGAGAAG 60.325 60.000 0.00 0.00 0.00 2.85
98 99 0.324460 GAGGGAGAGGGGAACGAGAA 60.324 60.000 0.00 0.00 0.00 2.87
99 100 1.306970 GAGGGAGAGGGGAACGAGA 59.693 63.158 0.00 0.00 0.00 4.04
100 101 1.758906 GGAGGGAGAGGGGAACGAG 60.759 68.421 0.00 0.00 0.00 4.18
101 102 2.363361 GGAGGGAGAGGGGAACGA 59.637 66.667 0.00 0.00 0.00 3.85
102 103 2.764547 GGGAGGGAGAGGGGAACG 60.765 72.222 0.00 0.00 0.00 3.95
103 104 2.367107 GGGGAGGGAGAGGGGAAC 60.367 72.222 0.00 0.00 0.00 3.62
104 105 2.191846 AAGGGGAGGGAGAGGGGAA 61.192 63.158 0.00 0.00 0.00 3.97
105 106 2.543637 AAGGGGAGGGAGAGGGGA 60.544 66.667 0.00 0.00 0.00 4.81
106 107 2.367512 CAAGGGGAGGGAGAGGGG 60.368 72.222 0.00 0.00 0.00 4.79
107 108 3.093172 GCAAGGGGAGGGAGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
108 109 2.041928 AGCAAGGGGAGGGAGAGG 59.958 66.667 0.00 0.00 0.00 3.69
109 110 2.069430 GGAGCAAGGGGAGGGAGAG 61.069 68.421 0.00 0.00 0.00 3.20
110 111 2.041265 GGAGCAAGGGGAGGGAGA 59.959 66.667 0.00 0.00 0.00 3.71
111 112 3.474570 CGGAGCAAGGGGAGGGAG 61.475 72.222 0.00 0.00 0.00 4.30
112 113 4.332543 ACGGAGCAAGGGGAGGGA 62.333 66.667 0.00 0.00 0.00 4.20
113 114 4.101448 CACGGAGCAAGGGGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
114 115 4.101448 CCACGGAGCAAGGGGAGG 62.101 72.222 0.00 0.00 32.83 4.30
115 116 2.370445 ATCCACGGAGCAAGGGGAG 61.370 63.158 3.56 0.00 45.50 4.30
116 117 2.285368 ATCCACGGAGCAAGGGGA 60.285 61.111 0.00 0.00 46.48 4.81
117 118 2.124570 CATCCACGGAGCAAGGGG 60.125 66.667 0.00 0.00 0.00 4.79
118 119 2.825836 GCATCCACGGAGCAAGGG 60.826 66.667 0.00 0.00 0.00 3.95
119 120 1.817099 GAGCATCCACGGAGCAAGG 60.817 63.158 9.28 0.00 0.00 3.61
120 121 2.169789 CGAGCATCCACGGAGCAAG 61.170 63.158 9.28 1.33 0.00 4.01
121 122 2.125552 CGAGCATCCACGGAGCAA 60.126 61.111 9.28 0.00 0.00 3.91
122 123 3.068064 TCGAGCATCCACGGAGCA 61.068 61.111 9.28 0.00 0.00 4.26
123 124 2.279120 CTCGAGCATCCACGGAGC 60.279 66.667 0.00 0.00 0.00 4.70
124 125 1.064946 GACTCGAGCATCCACGGAG 59.935 63.158 13.61 0.00 0.00 4.63
125 126 1.377366 GAGACTCGAGCATCCACGGA 61.377 60.000 13.61 0.00 0.00 4.69
126 127 1.064946 GAGACTCGAGCATCCACGG 59.935 63.158 13.61 0.00 0.00 4.94
127 128 1.064946 GGAGACTCGAGCATCCACG 59.935 63.158 24.56 0.00 0.00 4.94
128 129 1.064946 CGGAGACTCGAGCATCCAC 59.935 63.158 27.15 11.35 0.00 4.02
129 130 1.377366 GACGGAGACTCGAGCATCCA 61.377 60.000 27.15 0.00 0.00 3.41
130 131 1.357334 GACGGAGACTCGAGCATCC 59.643 63.158 21.24 21.24 0.00 3.51
131 132 1.098712 AGGACGGAGACTCGAGCATC 61.099 60.000 13.61 10.65 0.00 3.91
132 133 1.077357 AGGACGGAGACTCGAGCAT 60.077 57.895 13.61 0.00 0.00 3.79
133 134 1.745864 GAGGACGGAGACTCGAGCA 60.746 63.158 13.61 0.00 0.00 4.26
134 135 1.433837 GAGAGGACGGAGACTCGAGC 61.434 65.000 13.61 5.49 39.26 5.03
135 136 0.812412 GGAGAGGACGGAGACTCGAG 60.812 65.000 11.84 11.84 39.26 4.04
136 137 1.221293 GGAGAGGACGGAGACTCGA 59.779 63.158 0.00 0.00 39.26 4.04
137 138 0.393267 AAGGAGAGGACGGAGACTCG 60.393 60.000 0.00 0.00 39.26 4.18
138 139 1.064979 AGAAGGAGAGGACGGAGACTC 60.065 57.143 0.00 0.00 35.89 3.36
139 140 0.996583 AGAAGGAGAGGACGGAGACT 59.003 55.000 0.00 0.00 0.00 3.24
140 141 1.340211 TGAGAAGGAGAGGACGGAGAC 60.340 57.143 0.00 0.00 0.00 3.36
141 142 0.992695 TGAGAAGGAGAGGACGGAGA 59.007 55.000 0.00 0.00 0.00 3.71
142 143 1.099689 GTGAGAAGGAGAGGACGGAG 58.900 60.000 0.00 0.00 0.00 4.63
143 144 0.677098 CGTGAGAAGGAGAGGACGGA 60.677 60.000 0.00 0.00 0.00 4.69
144 145 0.677098 TCGTGAGAAGGAGAGGACGG 60.677 60.000 0.00 0.00 37.03 4.79
145 146 2.855887 TCGTGAGAAGGAGAGGACG 58.144 57.895 0.00 0.00 37.03 4.79
157 158 4.098654 AGGTACCAAGAAGATGATCGTGAG 59.901 45.833 15.94 0.00 31.49 3.51
158 159 4.023980 AGGTACCAAGAAGATGATCGTGA 58.976 43.478 15.94 0.00 31.49 4.35
159 160 4.392921 AGGTACCAAGAAGATGATCGTG 57.607 45.455 15.94 0.00 0.00 4.35
160 161 5.892119 TCTTAGGTACCAAGAAGATGATCGT 59.108 40.000 15.94 0.00 0.00 3.73
161 162 6.392625 TCTTAGGTACCAAGAAGATGATCG 57.607 41.667 15.94 0.00 0.00 3.69
162 163 7.172361 GCATTCTTAGGTACCAAGAAGATGATC 59.828 40.741 27.97 15.77 43.31 2.92
163 164 6.995091 GCATTCTTAGGTACCAAGAAGATGAT 59.005 38.462 27.97 16.98 43.31 2.45
164 165 6.070251 TGCATTCTTAGGTACCAAGAAGATGA 60.070 38.462 27.97 15.96 43.31 2.92
165 166 6.115446 TGCATTCTTAGGTACCAAGAAGATG 58.885 40.000 27.97 24.52 43.31 2.90
166 167 6.313519 TGCATTCTTAGGTACCAAGAAGAT 57.686 37.500 27.97 18.08 43.31 2.40
167 168 5.755409 TGCATTCTTAGGTACCAAGAAGA 57.245 39.130 27.97 22.78 43.31 2.87
168 169 6.203723 GCTATGCATTCTTAGGTACCAAGAAG 59.796 42.308 27.97 21.45 43.31 2.85
169 170 6.055588 GCTATGCATTCTTAGGTACCAAGAA 58.944 40.000 27.20 27.20 43.97 2.52
170 171 5.611374 GCTATGCATTCTTAGGTACCAAGA 58.389 41.667 15.94 17.00 0.00 3.02
171 172 4.449068 CGCTATGCATTCTTAGGTACCAAG 59.551 45.833 15.94 15.03 0.00 3.61
172 173 4.100344 TCGCTATGCATTCTTAGGTACCAA 59.900 41.667 15.94 5.67 0.00 3.67
173 174 3.639561 TCGCTATGCATTCTTAGGTACCA 59.360 43.478 15.94 0.00 0.00 3.25
174 175 4.238514 CTCGCTATGCATTCTTAGGTACC 58.761 47.826 3.54 2.73 0.00 3.34
175 176 4.872664 ACTCGCTATGCATTCTTAGGTAC 58.127 43.478 3.54 0.00 0.00 3.34
176 177 4.827835 AGACTCGCTATGCATTCTTAGGTA 59.172 41.667 3.54 0.00 0.00 3.08
177 178 3.639094 AGACTCGCTATGCATTCTTAGGT 59.361 43.478 3.54 0.00 0.00 3.08
178 179 4.022416 AGAGACTCGCTATGCATTCTTAGG 60.022 45.833 3.54 0.00 0.00 2.69
179 180 5.119931 AGAGACTCGCTATGCATTCTTAG 57.880 43.478 3.54 0.00 0.00 2.18
180 181 5.521906 AAGAGACTCGCTATGCATTCTTA 57.478 39.130 3.54 0.00 0.00 2.10
181 182 4.399004 AAGAGACTCGCTATGCATTCTT 57.601 40.909 3.54 2.00 0.00 2.52
182 183 4.118410 CAAAGAGACTCGCTATGCATTCT 58.882 43.478 3.54 0.00 0.00 2.40
183 184 4.115516 TCAAAGAGACTCGCTATGCATTC 58.884 43.478 3.54 0.00 0.00 2.67
184 185 4.118410 CTCAAAGAGACTCGCTATGCATT 58.882 43.478 3.54 0.00 0.00 3.56
185 186 3.492309 CCTCAAAGAGACTCGCTATGCAT 60.492 47.826 3.79 3.79 0.00 3.96
186 187 2.159184 CCTCAAAGAGACTCGCTATGCA 60.159 50.000 0.00 0.00 0.00 3.96
187 188 2.159170 ACCTCAAAGAGACTCGCTATGC 60.159 50.000 0.00 0.00 0.00 3.14
188 189 3.791973 ACCTCAAAGAGACTCGCTATG 57.208 47.619 0.00 0.00 0.00 2.23
189 190 4.783055 TCTACCTCAAAGAGACTCGCTAT 58.217 43.478 0.00 0.00 0.00 2.97
190 191 4.217836 TCTACCTCAAAGAGACTCGCTA 57.782 45.455 0.00 0.00 0.00 4.26
191 192 3.074675 TCTACCTCAAAGAGACTCGCT 57.925 47.619 0.00 0.00 0.00 4.93
192 193 3.503891 GTTCTACCTCAAAGAGACTCGC 58.496 50.000 0.00 0.00 0.00 5.03
193 194 3.119424 GGGTTCTACCTCAAAGAGACTCG 60.119 52.174 0.00 0.00 38.64 4.18
194 195 3.833070 TGGGTTCTACCTCAAAGAGACTC 59.167 47.826 0.00 0.00 38.64 3.36
195 196 3.858135 TGGGTTCTACCTCAAAGAGACT 58.142 45.455 0.00 0.00 38.64 3.24
196 197 4.618920 TTGGGTTCTACCTCAAAGAGAC 57.381 45.455 0.00 0.00 38.64 3.36
197 198 5.548056 AGAATTGGGTTCTACCTCAAAGAGA 59.452 40.000 0.00 0.00 45.28 3.10
198 199 5.810095 AGAATTGGGTTCTACCTCAAAGAG 58.190 41.667 0.00 0.00 45.28 2.85
199 200 5.843019 AGAATTGGGTTCTACCTCAAAGA 57.157 39.130 0.00 0.00 45.28 2.52
210 211 6.690530 TCAAATTCACATGAGAATTGGGTTC 58.309 36.000 25.47 0.00 44.96 3.62
211 212 6.669125 TCAAATTCACATGAGAATTGGGTT 57.331 33.333 25.47 11.74 44.96 4.11
212 213 6.669125 TTCAAATTCACATGAGAATTGGGT 57.331 33.333 25.47 12.03 44.96 4.51
213 214 6.537301 CCATTCAAATTCACATGAGAATTGGG 59.463 38.462 25.47 20.84 44.96 4.12
214 215 7.324935 TCCATTCAAATTCACATGAGAATTGG 58.675 34.615 25.47 23.13 44.96 3.16
215 216 7.010183 GCTCCATTCAAATTCACATGAGAATTG 59.990 37.037 25.47 19.68 44.96 2.32
217 218 6.380274 AGCTCCATTCAAATTCACATGAGAAT 59.620 34.615 12.03 12.03 39.81 2.40
218 219 5.713389 AGCTCCATTCAAATTCACATGAGAA 59.287 36.000 8.06 8.06 0.00 2.87
219 220 5.258841 AGCTCCATTCAAATTCACATGAGA 58.741 37.500 0.00 0.00 0.00 3.27
220 221 5.578005 AGCTCCATTCAAATTCACATGAG 57.422 39.130 0.00 0.00 0.00 2.90
221 222 4.095334 CGAGCTCCATTCAAATTCACATGA 59.905 41.667 8.47 0.00 0.00 3.07
222 223 4.095334 TCGAGCTCCATTCAAATTCACATG 59.905 41.667 8.47 0.00 0.00 3.21
223 224 4.264253 TCGAGCTCCATTCAAATTCACAT 58.736 39.130 8.47 0.00 0.00 3.21
224 225 3.673902 TCGAGCTCCATTCAAATTCACA 58.326 40.909 8.47 0.00 0.00 3.58
225 226 4.393062 TCTTCGAGCTCCATTCAAATTCAC 59.607 41.667 8.47 0.00 0.00 3.18
226 227 4.578871 TCTTCGAGCTCCATTCAAATTCA 58.421 39.130 8.47 0.00 0.00 2.57
227 228 4.034975 CCTCTTCGAGCTCCATTCAAATTC 59.965 45.833 8.47 0.00 0.00 2.17
228 229 3.944015 CCTCTTCGAGCTCCATTCAAATT 59.056 43.478 8.47 0.00 0.00 1.82
229 230 3.198635 TCCTCTTCGAGCTCCATTCAAAT 59.801 43.478 8.47 0.00 0.00 2.32
230 231 2.567169 TCCTCTTCGAGCTCCATTCAAA 59.433 45.455 8.47 0.00 0.00 2.69
231 232 2.179427 TCCTCTTCGAGCTCCATTCAA 58.821 47.619 8.47 0.00 0.00 2.69
232 233 1.852633 TCCTCTTCGAGCTCCATTCA 58.147 50.000 8.47 0.00 0.00 2.57
233 234 2.482839 CCTTCCTCTTCGAGCTCCATTC 60.483 54.545 8.47 0.00 0.00 2.67
234 235 1.484240 CCTTCCTCTTCGAGCTCCATT 59.516 52.381 8.47 0.00 0.00 3.16
235 236 1.118838 CCTTCCTCTTCGAGCTCCAT 58.881 55.000 8.47 0.00 0.00 3.41
236 237 0.039764 TCCTTCCTCTTCGAGCTCCA 59.960 55.000 8.47 0.00 0.00 3.86
237 238 0.744281 CTCCTTCCTCTTCGAGCTCC 59.256 60.000 8.47 0.00 0.00 4.70
238 239 1.470051 ACTCCTTCCTCTTCGAGCTC 58.530 55.000 2.73 2.73 0.00 4.09
239 240 1.931635 AACTCCTTCCTCTTCGAGCT 58.068 50.000 0.00 0.00 0.00 4.09
240 241 3.513662 GTTAACTCCTTCCTCTTCGAGC 58.486 50.000 0.00 0.00 0.00 5.03
241 242 3.764972 AGGTTAACTCCTTCCTCTTCGAG 59.235 47.826 5.42 0.00 33.52 4.04
242 243 3.762823 GAGGTTAACTCCTTCCTCTTCGA 59.237 47.826 5.42 0.00 42.02 3.71
243 244 3.427773 CGAGGTTAACTCCTTCCTCTTCG 60.428 52.174 5.42 0.00 43.57 3.79
244 245 3.510753 ACGAGGTTAACTCCTTCCTCTTC 59.489 47.826 5.42 0.00 43.57 2.87
245 246 3.508426 ACGAGGTTAACTCCTTCCTCTT 58.492 45.455 5.42 0.00 43.57 2.85
246 247 3.172471 ACGAGGTTAACTCCTTCCTCT 57.828 47.619 5.42 0.00 43.57 3.69
247 248 3.510753 AGAACGAGGTTAACTCCTTCCTC 59.489 47.826 5.42 1.62 43.57 3.71
248 249 3.508426 AGAACGAGGTTAACTCCTTCCT 58.492 45.455 5.42 0.00 43.57 3.36
249 250 3.672781 CGAGAACGAGGTTAACTCCTTCC 60.673 52.174 5.42 0.00 43.57 3.46
250 251 3.190118 TCGAGAACGAGGTTAACTCCTTC 59.810 47.826 5.42 1.62 43.57 3.46
251 252 3.152341 TCGAGAACGAGGTTAACTCCTT 58.848 45.455 5.42 0.00 43.57 3.36
252 253 2.787994 TCGAGAACGAGGTTAACTCCT 58.212 47.619 5.42 0.00 43.57 3.69
264 265 3.071459 GCACGCACCATCGAGAACG 62.071 63.158 0.00 0.00 41.26 3.95
265 266 2.027073 TGCACGCACCATCGAGAAC 61.027 57.895 0.00 0.00 0.00 3.01
266 267 2.027073 GTGCACGCACCATCGAGAA 61.027 57.895 11.13 0.00 40.79 2.87
267 268 2.432456 GTGCACGCACCATCGAGA 60.432 61.111 11.13 0.00 40.79 4.04
268 269 3.842126 CGTGCACGCACCATCGAG 61.842 66.667 28.16 0.00 43.49 4.04
269 270 4.656117 ACGTGCACGCACCATCGA 62.656 61.111 37.35 0.00 43.49 3.59
270 271 4.428922 CACGTGCACGCACCATCG 62.429 66.667 37.35 13.43 43.49 3.84
271 272 4.741781 GCACGTGCACGCACCATC 62.742 66.667 37.35 16.61 43.49 3.51
275 276 3.640000 AAGAGCACGTGCACGCAC 61.640 61.111 39.21 28.50 45.16 5.34
276 277 3.639008 CAAGAGCACGTGCACGCA 61.639 61.111 39.21 0.00 45.16 5.24
277 278 3.564342 GACAAGAGCACGTGCACGC 62.564 63.158 39.21 27.32 45.16 5.34
278 279 1.560004 ATGACAAGAGCACGTGCACG 61.560 55.000 39.21 35.99 45.16 5.34
279 280 0.588252 AATGACAAGAGCACGTGCAC 59.412 50.000 39.21 33.42 45.16 4.57
280 281 0.587768 CAATGACAAGAGCACGTGCA 59.412 50.000 39.21 19.59 45.16 4.57
281 282 0.110056 CCAATGACAAGAGCACGTGC 60.110 55.000 32.79 32.79 42.49 5.34
282 283 1.195448 GACCAATGACAAGAGCACGTG 59.805 52.381 12.28 12.28 0.00 4.49
283 284 1.512926 GACCAATGACAAGAGCACGT 58.487 50.000 0.00 0.00 0.00 4.49
284 285 0.798776 GGACCAATGACAAGAGCACG 59.201 55.000 0.00 0.00 0.00 5.34
285 286 2.079925 GAGGACCAATGACAAGAGCAC 58.920 52.381 0.00 0.00 0.00 4.40
286 287 1.980765 AGAGGACCAATGACAAGAGCA 59.019 47.619 0.00 0.00 0.00 4.26
287 288 2.626840 GAGAGGACCAATGACAAGAGC 58.373 52.381 0.00 0.00 0.00 4.09
288 289 2.886081 CGAGAGGACCAATGACAAGAG 58.114 52.381 0.00 0.00 0.00 2.85
303 304 1.140589 CCACTGCTAGCACCGAGAG 59.859 63.158 14.93 5.51 0.00 3.20
304 305 1.606601 ACCACTGCTAGCACCGAGA 60.607 57.895 14.93 0.00 0.00 4.04
305 306 1.446792 CACCACTGCTAGCACCGAG 60.447 63.158 14.93 6.74 0.00 4.63
306 307 1.257750 ATCACCACTGCTAGCACCGA 61.258 55.000 14.93 6.30 0.00 4.69
307 308 1.086067 CATCACCACTGCTAGCACCG 61.086 60.000 14.93 7.98 0.00 4.94
308 309 0.745845 CCATCACCACTGCTAGCACC 60.746 60.000 14.93 0.00 0.00 5.01
309 310 0.250234 TCCATCACCACTGCTAGCAC 59.750 55.000 14.93 0.00 0.00 4.40
310 311 0.538584 CTCCATCACCACTGCTAGCA 59.461 55.000 18.22 18.22 0.00 3.49
311 312 0.826715 TCTCCATCACCACTGCTAGC 59.173 55.000 8.10 8.10 0.00 3.42
312 313 2.100584 GACTCTCCATCACCACTGCTAG 59.899 54.545 0.00 0.00 0.00 3.42
313 314 2.103373 GACTCTCCATCACCACTGCTA 58.897 52.381 0.00 0.00 0.00 3.49
314 315 0.901124 GACTCTCCATCACCACTGCT 59.099 55.000 0.00 0.00 0.00 4.24
315 316 0.107945 GGACTCTCCATCACCACTGC 60.108 60.000 0.00 0.00 36.28 4.40
316 317 0.174389 CGGACTCTCCATCACCACTG 59.826 60.000 0.00 0.00 35.91 3.66
317 318 0.251832 ACGGACTCTCCATCACCACT 60.252 55.000 0.00 0.00 35.91 4.00
318 319 0.108615 CACGGACTCTCCATCACCAC 60.109 60.000 0.00 0.00 35.91 4.16
319 320 0.541998 ACACGGACTCTCCATCACCA 60.542 55.000 0.00 0.00 35.91 4.17
320 321 0.108615 CACACGGACTCTCCATCACC 60.109 60.000 0.00 0.00 35.91 4.02
321 322 0.108615 CCACACGGACTCTCCATCAC 60.109 60.000 0.00 0.00 35.91 3.06
322 323 1.257750 CCCACACGGACTCTCCATCA 61.258 60.000 0.00 0.00 35.91 3.07
323 324 1.258445 ACCCACACGGACTCTCCATC 61.258 60.000 0.00 0.00 35.91 3.51
324 325 1.229209 ACCCACACGGACTCTCCAT 60.229 57.895 0.00 0.00 35.91 3.41
325 326 2.200370 ACCCACACGGACTCTCCA 59.800 61.111 0.00 0.00 35.91 3.86
326 327 2.657237 CACCCACACGGACTCTCC 59.343 66.667 0.00 0.00 34.64 3.71
327 328 2.156051 GACCACCCACACGGACTCTC 62.156 65.000 0.00 0.00 34.64 3.20
328 329 2.122989 ACCACCCACACGGACTCT 60.123 61.111 0.00 0.00 34.64 3.24
329 330 2.342648 GACCACCCACACGGACTC 59.657 66.667 0.00 0.00 34.64 3.36
330 331 3.612681 CGACCACCCACACGGACT 61.613 66.667 0.00 0.00 34.64 3.85
331 332 3.569049 CTCGACCACCCACACGGAC 62.569 68.421 0.00 0.00 34.64 4.79
332 333 3.299977 CTCGACCACCCACACGGA 61.300 66.667 0.00 0.00 34.64 4.69
333 334 4.373116 CCTCGACCACCCACACGG 62.373 72.222 0.00 0.00 37.81 4.94
334 335 4.373116 CCCTCGACCACCCACACG 62.373 72.222 0.00 0.00 0.00 4.49
335 336 2.291043 ATCCCTCGACCACCCACAC 61.291 63.158 0.00 0.00 0.00 3.82
336 337 2.121832 ATCCCTCGACCACCCACA 59.878 61.111 0.00 0.00 0.00 4.17
337 338 2.584608 CATCCCTCGACCACCCAC 59.415 66.667 0.00 0.00 0.00 4.61
338 339 3.399181 GCATCCCTCGACCACCCA 61.399 66.667 0.00 0.00 0.00 4.51
339 340 3.083997 AGCATCCCTCGACCACCC 61.084 66.667 0.00 0.00 0.00 4.61
340 341 2.501610 GAGCATCCCTCGACCACC 59.498 66.667 0.00 0.00 0.00 4.61
352 353 3.198417 TGAGTACATGTGATGTGGAGCAT 59.802 43.478 9.11 0.00 44.60 3.79
353 354 2.566724 TGAGTACATGTGATGTGGAGCA 59.433 45.455 9.11 0.00 44.60 4.26
354 355 3.251479 TGAGTACATGTGATGTGGAGC 57.749 47.619 9.11 0.00 44.60 4.70
355 356 4.568956 TGTTGAGTACATGTGATGTGGAG 58.431 43.478 9.11 0.00 44.60 3.86
356 357 4.615588 TGTTGAGTACATGTGATGTGGA 57.384 40.909 9.11 0.00 44.60 4.02
387 388 2.103432 TGTTCCCTTTGAGACACGCTAA 59.897 45.455 0.00 0.00 0.00 3.09
392 393 3.013921 TGTTGTGTTCCCTTTGAGACAC 58.986 45.455 0.00 0.00 41.97 3.67
407 408 4.400251 AGTTCCCATCATAGCATTGTTGTG 59.600 41.667 0.00 0.00 0.00 3.33
432 433 3.393278 AGAGCTTAGGGTGTGTTTGGTAA 59.607 43.478 0.00 0.00 0.00 2.85
494 499 2.834638 AATAAAGGGCTGCATGGAGT 57.165 45.000 16.22 0.00 0.00 3.85
608 615 6.601613 AGGTCGCATTTTAAGGTATTTCATCA 59.398 34.615 0.00 0.00 0.00 3.07
622 629 2.593346 TTTTGCACAGGTCGCATTTT 57.407 40.000 0.00 0.00 39.58 1.82
855 867 3.138798 GGCCGAGCTCCGTAGACA 61.139 66.667 8.47 0.00 36.31 3.41
856 868 2.829458 AGGCCGAGCTCCGTAGAC 60.829 66.667 8.47 0.00 36.31 2.59
858 870 3.597728 GGAGGCCGAGCTCCGTAG 61.598 72.222 8.47 0.00 36.31 3.51
859 871 3.949885 TTGGAGGCCGAGCTCCGTA 62.950 63.158 8.47 0.00 42.42 4.02
861 873 3.605749 TTTTGGAGGCCGAGCTCCG 62.606 63.158 8.47 2.35 42.42 4.63
1137 1152 1.676678 CCGGGTCGTGGATGACATCT 61.677 60.000 14.95 0.00 40.72 2.90
1478 1493 6.807230 CGTCAGAACTAACCATAGGCATATAC 59.193 42.308 0.00 0.00 33.15 1.47
1496 1511 5.944599 AGTTACTATCAGGAGAACGTCAGAA 59.055 40.000 0.00 0.00 0.00 3.02
1553 1568 7.066163 TCGAACTATGAGCATTTCATCATTTGT 59.934 33.333 0.00 0.00 43.03 2.83
1554 1569 7.412063 TCGAACTATGAGCATTTCATCATTTG 58.588 34.615 0.00 0.00 43.03 2.32
1587 1602 3.987868 TCAGAAGCAGTGAACGAACATAC 59.012 43.478 0.00 0.00 0.00 2.39
1657 1672 2.932498 ACATGTAAAGCACGCACATTG 58.068 42.857 0.00 0.00 30.59 2.82
1776 1792 6.039616 CAGTTCTAGGATAACAGAAGAGCAC 58.960 44.000 0.00 0.00 31.62 4.40
1813 1864 5.407995 CAGTTCTAGGAAAACAGAAGAGCAG 59.592 44.000 0.00 0.00 31.62 4.24
1817 1868 5.365605 TGTCCAGTTCTAGGAAAACAGAAGA 59.634 40.000 0.00 0.00 36.80 2.87
1818 1869 5.611374 TGTCCAGTTCTAGGAAAACAGAAG 58.389 41.667 0.00 0.00 36.80 2.85
1819 1870 5.623956 TGTCCAGTTCTAGGAAAACAGAA 57.376 39.130 0.00 0.00 36.80 3.02
1820 1871 5.306937 TCATGTCCAGTTCTAGGAAAACAGA 59.693 40.000 0.00 0.00 36.80 3.41
1821 1872 5.551233 TCATGTCCAGTTCTAGGAAAACAG 58.449 41.667 0.00 0.00 36.80 3.16
1822 1873 5.560722 TCATGTCCAGTTCTAGGAAAACA 57.439 39.130 0.00 0.00 36.80 2.83
1823 1874 7.254932 GCATATCATGTCCAGTTCTAGGAAAAC 60.255 40.741 0.00 0.00 36.80 2.43
1824 1875 6.767902 GCATATCATGTCCAGTTCTAGGAAAA 59.232 38.462 0.00 0.00 36.80 2.29
1825 1876 6.100279 AGCATATCATGTCCAGTTCTAGGAAA 59.900 38.462 0.00 0.00 36.80 3.13
1826 1877 5.604231 AGCATATCATGTCCAGTTCTAGGAA 59.396 40.000 0.00 0.00 36.80 3.36
1827 1878 5.150715 AGCATATCATGTCCAGTTCTAGGA 58.849 41.667 0.00 0.00 0.00 2.94
1828 1879 5.480642 AGCATATCATGTCCAGTTCTAGG 57.519 43.478 0.00 0.00 0.00 3.02
1829 1880 5.178996 GCAAGCATATCATGTCCAGTTCTAG 59.821 44.000 0.00 0.00 0.00 2.43
1830 1881 5.059161 GCAAGCATATCATGTCCAGTTCTA 58.941 41.667 0.00 0.00 0.00 2.10
1831 1882 3.881688 GCAAGCATATCATGTCCAGTTCT 59.118 43.478 0.00 0.00 0.00 3.01
1832 1883 3.881688 AGCAAGCATATCATGTCCAGTTC 59.118 43.478 0.00 0.00 0.00 3.01
1833 1884 3.881688 GAGCAAGCATATCATGTCCAGTT 59.118 43.478 0.00 0.00 0.00 3.16
1834 1885 3.136077 AGAGCAAGCATATCATGTCCAGT 59.864 43.478 0.00 0.00 0.00 4.00
1835 1886 3.741249 AGAGCAAGCATATCATGTCCAG 58.259 45.455 0.00 0.00 0.00 3.86
1836 1887 3.851458 AGAGCAAGCATATCATGTCCA 57.149 42.857 0.00 0.00 0.00 4.02
1837 1888 4.213694 CAGAAGAGCAAGCATATCATGTCC 59.786 45.833 0.00 0.00 0.00 4.02
1838 1889 4.815308 ACAGAAGAGCAAGCATATCATGTC 59.185 41.667 0.00 0.00 0.00 3.06
1839 1890 4.778579 ACAGAAGAGCAAGCATATCATGT 58.221 39.130 0.00 0.00 0.00 3.21
1840 1891 5.752892 AACAGAAGAGCAAGCATATCATG 57.247 39.130 0.00 0.00 0.00 3.07
1841 1892 6.654161 GGATAACAGAAGAGCAAGCATATCAT 59.346 38.462 0.00 0.00 0.00 2.45
1842 1893 5.994054 GGATAACAGAAGAGCAAGCATATCA 59.006 40.000 0.00 0.00 0.00 2.15
1843 1894 6.229733 AGGATAACAGAAGAGCAAGCATATC 58.770 40.000 0.00 0.00 0.00 1.63
1844 1895 6.185114 AGGATAACAGAAGAGCAAGCATAT 57.815 37.500 0.00 0.00 0.00 1.78
1845 1896 5.620738 AGGATAACAGAAGAGCAAGCATA 57.379 39.130 0.00 0.00 0.00 3.14
1846 1897 4.500499 AGGATAACAGAAGAGCAAGCAT 57.500 40.909 0.00 0.00 0.00 3.79
1847 1898 3.988976 AGGATAACAGAAGAGCAAGCA 57.011 42.857 0.00 0.00 0.00 3.91
1848 1899 7.170658 CAGTTATAGGATAACAGAAGAGCAAGC 59.829 40.741 10.99 0.00 0.00 4.01
1849 1900 7.170658 GCAGTTATAGGATAACAGAAGAGCAAG 59.829 40.741 10.99 0.00 0.00 4.01
1850 1901 6.986817 GCAGTTATAGGATAACAGAAGAGCAA 59.013 38.462 10.99 0.00 0.00 3.91
1851 1902 6.098266 TGCAGTTATAGGATAACAGAAGAGCA 59.902 38.462 10.99 8.09 0.00 4.26
1852 1903 6.422400 GTGCAGTTATAGGATAACAGAAGAGC 59.578 42.308 10.99 6.23 0.00 4.09
1853 1904 7.492524 TGTGCAGTTATAGGATAACAGAAGAG 58.507 38.462 10.99 0.00 0.00 2.85
1894 1945 6.710744 CACATGTCTCTGGTTTAAGGTTTACT 59.289 38.462 0.00 0.00 0.00 2.24
2027 2081 0.461961 AGGATCTTGTACTGGCGAGC 59.538 55.000 0.00 0.00 0.00 5.03
2030 2085 3.181475 ACATGTAGGATCTTGTACTGGCG 60.181 47.826 0.00 0.00 0.00 5.69
2032 2087 7.442364 CCATTAACATGTAGGATCTTGTACTGG 59.558 40.741 0.00 0.00 0.00 4.00
2074 2129 7.910162 CCATCAGGAAACATAAACAAAGATACG 59.090 37.037 0.00 0.00 36.89 3.06
2092 2147 3.010472 TCAAAAGAATCAGGCCATCAGGA 59.990 43.478 5.01 0.00 36.89 3.86
2121 2176 6.314018 CGTCTTAATATTTGTGCAGCTGAAA 58.686 36.000 20.43 9.86 0.00 2.69
2151 2207 5.476254 TGATCCTGCATAAACACAACATGAA 59.524 36.000 0.00 0.00 0.00 2.57
2186 2242 2.509336 ACGATCTTCTTGGCGCCG 60.509 61.111 23.90 8.74 0.00 6.46
2628 2684 4.024048 ACCACGACAGCAAAAACTGATAAG 60.024 41.667 0.00 0.00 40.25 1.73
2701 2757 7.730364 ACAGTAAACTCAAGAAAATCGACAT 57.270 32.000 0.00 0.00 0.00 3.06
2757 2838 5.331876 TCAACCAAACAAAAATCCGTTCT 57.668 34.783 0.00 0.00 0.00 3.01
2933 5009 2.362717 GGATCCTAGTGCTACTGTCACC 59.637 54.545 3.84 0.00 35.14 4.02
2934 5010 2.362717 GGGATCCTAGTGCTACTGTCAC 59.637 54.545 12.58 0.00 34.80 3.67
2935 5011 2.245028 AGGGATCCTAGTGCTACTGTCA 59.755 50.000 12.58 0.00 28.47 3.58
2936 5012 2.888414 GAGGGATCCTAGTGCTACTGTC 59.112 54.545 12.58 0.00 31.76 3.51
2937 5013 2.425102 GGAGGGATCCTAGTGCTACTGT 60.425 54.545 12.58 0.00 31.76 3.55
2938 5014 2.158385 AGGAGGGATCCTAGTGCTACTG 60.158 54.545 12.58 0.00 38.58 2.74
2939 5015 2.148702 AGGAGGGATCCTAGTGCTACT 58.851 52.381 12.58 2.52 38.58 2.57
2940 5016 2.687003 AGGAGGGATCCTAGTGCTAC 57.313 55.000 12.58 0.00 38.58 3.58
2947 5023 3.524958 AAGCCCACTAGGAGGGATCCTA 61.525 54.545 22.79 4.06 46.12 2.94
2948 5024 2.849985 AAGCCCACTAGGAGGGATCCT 61.850 57.143 22.79 10.07 46.12 3.24
2949 5025 0.400670 AAGCCCACTAGGAGGGATCC 60.401 60.000 22.79 1.92 46.12 3.36
2950 5026 1.512735 AAAGCCCACTAGGAGGGATC 58.487 55.000 22.79 8.82 46.12 3.36
2954 5030 5.163088 ACCATTAATAAAGCCCACTAGGAGG 60.163 44.000 0.00 0.00 38.24 4.30
2955 5031 5.941788 ACCATTAATAAAGCCCACTAGGAG 58.058 41.667 0.00 0.00 38.24 3.69
2956 5032 5.987019 ACCATTAATAAAGCCCACTAGGA 57.013 39.130 0.00 0.00 38.24 2.94
2957 5033 7.255001 CGTTTACCATTAATAAAGCCCACTAGG 60.255 40.741 0.00 0.00 39.47 3.02
2958 5034 7.281549 ACGTTTACCATTAATAAAGCCCACTAG 59.718 37.037 0.00 0.00 0.00 2.57
2959 5035 7.111466 ACGTTTACCATTAATAAAGCCCACTA 58.889 34.615 0.00 0.00 0.00 2.74
2960 5036 5.947566 ACGTTTACCATTAATAAAGCCCACT 59.052 36.000 0.00 0.00 0.00 4.00
2961 5037 6.198650 ACGTTTACCATTAATAAAGCCCAC 57.801 37.500 0.00 0.00 0.00 4.61
2962 5038 6.837471 AACGTTTACCATTAATAAAGCCCA 57.163 33.333 0.00 0.00 0.00 5.36
2963 5039 7.092079 ACAAACGTTTACCATTAATAAAGCCC 58.908 34.615 14.20 0.00 0.00 5.19
2964 5040 9.623350 TTACAAACGTTTACCATTAATAAAGCC 57.377 29.630 14.20 0.00 0.00 4.35
2968 5044 9.985318 CCGATTACAAACGTTTACCATTAATAA 57.015 29.630 14.20 3.56 0.00 1.40
2969 5045 8.121708 GCCGATTACAAACGTTTACCATTAATA 58.878 33.333 14.20 0.00 0.00 0.98
2970 5046 6.968335 GCCGATTACAAACGTTTACCATTAAT 59.032 34.615 14.20 10.92 0.00 1.40
2971 5047 6.313252 GCCGATTACAAACGTTTACCATTAA 58.687 36.000 14.20 6.90 0.00 1.40
2972 5048 5.445673 CGCCGATTACAAACGTTTACCATTA 60.446 40.000 14.20 0.00 0.00 1.90
2973 5049 4.669708 CGCCGATTACAAACGTTTACCATT 60.670 41.667 14.20 0.00 0.00 3.16
3043 5119 3.422303 GTTGCGTGCTCGATGGCA 61.422 61.111 13.13 0.00 40.15 4.92
3090 5166 3.380637 CGGGGAAGATAAGACGAAGAAGA 59.619 47.826 0.00 0.00 0.00 2.87
3123 5199 2.396157 GGGCGAAAAACGAGCGGAT 61.396 57.895 0.00 0.00 45.77 4.18
3127 5203 0.097150 GAGATGGGCGAAAAACGAGC 59.903 55.000 0.00 0.00 45.77 5.03
3137 5213 1.147153 GGGAGGAAAGAGATGGGCG 59.853 63.158 0.00 0.00 0.00 6.13
3138 5214 0.625849 TTGGGAGGAAAGAGATGGGC 59.374 55.000 0.00 0.00 0.00 5.36
3166 5242 0.617413 CATGGCTTGGAGTCTGGAGT 59.383 55.000 0.00 0.00 0.00 3.85
3194 5273 0.253044 CTCCTCGGGAAAGATTGCCA 59.747 55.000 1.57 0.00 41.95 4.92
3196 5275 1.432270 CGCTCCTCGGGAAAGATTGC 61.432 60.000 0.00 0.00 33.78 3.56
3313 5392 0.322322 ATTGGCCATTGTGCAGGTTG 59.678 50.000 6.09 0.00 0.00 3.77
3324 5403 2.202878 CGACCGTCGATTGGCCAT 60.203 61.111 16.03 0.00 43.74 4.40
3325 5404 4.444838 CCGACCGTCGATTGGCCA 62.445 66.667 22.40 0.00 43.74 5.36
3329 5408 3.399797 TACCGCCGACCGTCGATTG 62.400 63.158 22.40 11.45 43.74 2.67
3347 5426 2.493030 CCGACCGCCGATTGTAGT 59.507 61.111 0.00 0.00 41.76 2.73
3349 5428 4.858433 CGCCGACCGCCGATTGTA 62.858 66.667 0.00 0.00 41.76 2.41
3404 5483 1.456923 GTTTCCAGCTTTTTGCATCGC 59.543 47.619 0.00 0.00 45.94 4.58
3493 5572 1.002900 AGCAAAAATGTCACCGTCGTG 60.003 47.619 0.00 0.00 41.72 4.35
3495 5574 1.673760 CAGCAAAAATGTCACCGTCG 58.326 50.000 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.