Multiple sequence alignment - TraesCS4D01G123300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G123300 chr4D 100.000 3017 0 0 1 3017 107711734 107708718 0.000000e+00 5572.0
1 TraesCS4D01G123300 chr4D 81.181 271 46 3 1000 1266 506607108 506606839 2.360000e-51 213.0
2 TraesCS4D01G123300 chr4A 93.490 2212 76 17 514 2678 468602763 468604953 0.000000e+00 3225.0
3 TraesCS4D01G123300 chr4A 89.305 187 17 3 1 186 468602247 468602431 6.500000e-57 231.0
4 TraesCS4D01G123300 chr4A 82.051 273 40 5 1000 1266 724782635 724782904 1.090000e-54 224.0
5 TraesCS4D01G123300 chr4A 97.059 102 3 0 2691 2792 468604936 468605037 4.000000e-39 172.0
6 TraesCS4D01G123300 chr4B 94.163 2073 53 25 514 2559 168984380 168986411 0.000000e+00 3096.0
7 TraesCS4D01G123300 chr4B 84.409 186 16 10 1 186 168983890 168984062 1.440000e-38 171.0
8 TraesCS4D01G123300 chr4B 93.578 109 0 2 2690 2792 168986560 168986667 4.030000e-34 156.0
9 TraesCS4D01G123300 chr5D 85.078 516 55 15 1001 1504 238557791 238557286 9.650000e-140 507.0
10 TraesCS4D01G123300 chr5D 99.306 144 1 0 2874 3017 301623026 301622883 8.300000e-66 261.0
11 TraesCS4D01G123300 chr5D 88.112 143 17 0 2874 3016 352375064 352375206 1.440000e-38 171.0
12 TraesCS4D01G123300 chr5D 91.057 123 11 0 1001 1123 342713137 342713015 1.860000e-37 167.0
13 TraesCS4D01G123300 chr5D 93.407 91 4 2 1379 1468 342712637 342712548 1.890000e-27 134.0
14 TraesCS4D01G123300 chr5D 93.220 59 4 0 333 391 501115849 501115907 1.490000e-13 87.9
15 TraesCS4D01G123300 chr5D 97.500 40 1 0 220 259 501115809 501115848 5.400000e-08 69.4
16 TraesCS4D01G123300 chr5B 84.660 515 52 19 1001 1501 266501407 266501908 3.500000e-134 488.0
17 TraesCS4D01G123300 chr5B 92.308 91 5 2 1379 1468 402751166 402751077 8.780000e-26 128.0
18 TraesCS4D01G123300 chr5A 84.149 511 65 11 1001 1501 316085021 316085525 5.850000e-132 481.0
19 TraesCS4D01G123300 chr5A 90.244 123 12 0 1001 1123 443742801 443742679 8.660000e-36 161.0
20 TraesCS4D01G123300 chr5A 97.778 45 0 1 221 265 47586050 47586007 3.230000e-10 76.8
21 TraesCS4D01G123300 chr6D 100.000 144 0 0 2874 3017 80695431 80695574 1.780000e-67 267.0
22 TraesCS4D01G123300 chr6D 99.306 144 1 0 2874 3017 79693297 79693154 8.300000e-66 261.0
23 TraesCS4D01G123300 chr2D 100.000 144 0 0 2874 3017 101416789 101416932 1.780000e-67 267.0
24 TraesCS4D01G123300 chr2D 100.000 144 0 0 2874 3017 469220412 469220269 1.780000e-67 267.0
25 TraesCS4D01G123300 chr2D 86.022 93 8 5 1376 1465 108313429 108313519 8.900000e-16 95.3
26 TraesCS4D01G123300 chr1D 97.794 136 3 0 2882 3017 469528336 469528201 5.030000e-58 235.0
27 TraesCS4D01G123300 chr7A 81.618 272 43 5 1000 1266 12429647 12429378 5.060000e-53 219.0
28 TraesCS4D01G123300 chr7A 88.194 144 14 2 2874 3017 172409282 172409142 5.170000e-38 169.0
29 TraesCS4D01G123300 chr2A 92.361 144 11 0 2874 3017 409435335 409435192 3.940000e-49 206.0
30 TraesCS4D01G123300 chr2A 86.022 93 8 5 1376 1465 104450755 104450845 8.900000e-16 95.3
31 TraesCS4D01G123300 chr7D 80.515 272 46 5 1000 1266 13029512 13029243 5.100000e-48 202.0
32 TraesCS4D01G123300 chr2B 92.308 117 7 2 278 392 547919447 547919331 6.690000e-37 165.0
33 TraesCS4D01G123300 chr2B 80.100 201 38 2 530 729 144558654 144558853 6.740000e-32 148.0
34 TraesCS4D01G123300 chr3B 100.000 30 0 0 356 385 399301701 399301672 4.200000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G123300 chr4D 107708718 107711734 3016 True 5572.000000 5572 100.000000 1 3017 1 chr4D.!!$R1 3016
1 TraesCS4D01G123300 chr4A 468602247 468605037 2790 False 1209.333333 3225 93.284667 1 2792 3 chr4A.!!$F2 2791
2 TraesCS4D01G123300 chr4B 168983890 168986667 2777 False 1141.000000 3096 90.716667 1 2792 3 chr4B.!!$F1 2791
3 TraesCS4D01G123300 chr5D 238557286 238557791 505 True 507.000000 507 85.078000 1001 1504 1 chr5D.!!$R1 503
4 TraesCS4D01G123300 chr5B 266501407 266501908 501 False 488.000000 488 84.660000 1001 1501 1 chr5B.!!$F1 500
5 TraesCS4D01G123300 chr5A 316085021 316085525 504 False 481.000000 481 84.149000 1001 1501 1 chr5A.!!$F1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 587 0.394488 TGGGTTCAACACCTTTCGCA 60.394 50.0 0.0 0.0 46.38 5.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2361 0.034059 ACCAACAGAGGCTTGACTCG 59.966 55.0 0.0 0.0 42.31 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.755018 CAAGTGAATAGTTTGGTTTTGTTGATC 58.245 33.333 0.00 0.00 0.00 2.92
61 62 7.351981 TGTTGATCATTCAAACAAAGTAGTCG 58.648 34.615 0.00 0.00 43.29 4.18
66 67 8.786826 ATCATTCAAACAAAGTAGTCGGATAA 57.213 30.769 0.00 0.00 0.00 1.75
81 82 6.916440 AGTCGGATAAACCAAAATAAACACC 58.084 36.000 0.00 0.00 38.90 4.16
161 165 8.499162 CACCATCTCTAGTTTCACTTTTTGTAG 58.501 37.037 0.00 0.00 0.00 2.74
164 168 8.778358 CATCTCTAGTTTCACTTTTTGTAGCTT 58.222 33.333 0.00 0.00 0.00 3.74
167 171 8.677148 TCTAGTTTCACTTTTTGTAGCTTGAT 57.323 30.769 0.00 0.00 0.00 2.57
186 190 6.474751 GCTTGATTTTTCTCCATGCTCAATAC 59.525 38.462 0.00 0.00 0.00 1.89
188 192 8.806429 TTGATTTTTCTCCATGCTCAATACTA 57.194 30.769 0.00 0.00 0.00 1.82
191 195 6.624352 TTTTCTCCATGCTCAATACTATGC 57.376 37.500 0.00 0.00 0.00 3.14
193 197 3.906218 TCTCCATGCTCAATACTATGCCT 59.094 43.478 0.00 0.00 0.00 4.75
194 198 4.020751 TCTCCATGCTCAATACTATGCCTC 60.021 45.833 0.00 0.00 0.00 4.70
195 199 3.008375 TCCATGCTCAATACTATGCCTCC 59.992 47.826 0.00 0.00 0.00 4.30
197 201 3.758755 TGCTCAATACTATGCCTCCAG 57.241 47.619 0.00 0.00 0.00 3.86
198 202 3.041211 TGCTCAATACTATGCCTCCAGT 58.959 45.455 0.00 0.00 0.00 4.00
200 204 3.181461 GCTCAATACTATGCCTCCAGTGT 60.181 47.826 0.00 0.00 0.00 3.55
201 205 4.684485 GCTCAATACTATGCCTCCAGTGTT 60.684 45.833 0.00 0.00 0.00 3.32
204 208 7.136822 TCAATACTATGCCTCCAGTGTTAAT 57.863 36.000 0.00 0.00 0.00 1.40
205 209 8.257602 TCAATACTATGCCTCCAGTGTTAATA 57.742 34.615 0.00 0.00 0.00 0.98
206 210 8.367911 TCAATACTATGCCTCCAGTGTTAATAG 58.632 37.037 0.00 0.00 0.00 1.73
210 214 7.630082 ACTATGCCTCCAGTGTTAATAGAAAA 58.370 34.615 0.00 0.00 0.00 2.29
212 216 7.961326 ATGCCTCCAGTGTTAATAGAAAAAT 57.039 32.000 0.00 0.00 0.00 1.82
213 217 7.156876 TGCCTCCAGTGTTAATAGAAAAATG 57.843 36.000 0.00 0.00 0.00 2.32
214 218 6.036470 GCCTCCAGTGTTAATAGAAAAATGC 58.964 40.000 0.00 0.00 0.00 3.56
215 219 6.127619 GCCTCCAGTGTTAATAGAAAAATGCT 60.128 38.462 0.00 0.00 0.00 3.79
216 220 7.067008 GCCTCCAGTGTTAATAGAAAAATGCTA 59.933 37.037 0.00 0.00 0.00 3.49
217 221 8.616076 CCTCCAGTGTTAATAGAAAAATGCTAG 58.384 37.037 0.00 0.00 0.00 3.42
218 222 8.506168 TCCAGTGTTAATAGAAAAATGCTAGG 57.494 34.615 0.00 0.00 0.00 3.02
219 223 7.067008 TCCAGTGTTAATAGAAAAATGCTAGGC 59.933 37.037 0.00 0.00 0.00 3.93
220 224 7.196331 CAGTGTTAATAGAAAAATGCTAGGCC 58.804 38.462 0.00 0.00 0.00 5.19
221 225 7.067494 CAGTGTTAATAGAAAAATGCTAGGCCT 59.933 37.037 11.78 11.78 0.00 5.19
222 226 8.272173 AGTGTTAATAGAAAAATGCTAGGCCTA 58.728 33.333 13.09 13.09 0.00 3.93
223 227 8.343366 GTGTTAATAGAAAAATGCTAGGCCTAC 58.657 37.037 8.91 6.89 0.00 3.18
224 228 7.225931 TGTTAATAGAAAAATGCTAGGCCTACG 59.774 37.037 8.91 6.62 0.00 3.51
225 229 3.629142 AGAAAAATGCTAGGCCTACGT 57.371 42.857 8.91 4.83 0.00 3.57
229 233 5.585047 AGAAAAATGCTAGGCCTACGTAAAG 59.415 40.000 8.91 0.00 0.00 1.85
231 235 4.482952 AATGCTAGGCCTACGTAAAGTT 57.517 40.909 8.91 0.00 0.00 2.66
232 236 5.603170 AATGCTAGGCCTACGTAAAGTTA 57.397 39.130 8.91 0.00 0.00 2.24
233 237 4.376340 TGCTAGGCCTACGTAAAGTTAC 57.624 45.455 8.91 0.00 0.00 2.50
254 258 8.309656 AGTTACGTAACTTGCCTTAACTTATCT 58.690 33.333 30.57 7.05 43.57 1.98
255 259 8.590470 GTTACGTAACTTGCCTTAACTTATCTC 58.410 37.037 27.22 0.00 33.52 2.75
256 260 6.932947 ACGTAACTTGCCTTAACTTATCTCT 58.067 36.000 0.00 0.00 0.00 3.10
257 261 7.384477 ACGTAACTTGCCTTAACTTATCTCTT 58.616 34.615 0.00 0.00 0.00 2.85
258 262 7.544915 ACGTAACTTGCCTTAACTTATCTCTTC 59.455 37.037 0.00 0.00 0.00 2.87
260 264 4.870991 ACTTGCCTTAACTTATCTCTTCGC 59.129 41.667 0.00 0.00 0.00 4.70
261 265 4.465632 TGCCTTAACTTATCTCTTCGCA 57.534 40.909 0.00 0.00 0.00 5.10
263 267 3.556365 GCCTTAACTTATCTCTTCGCACC 59.444 47.826 0.00 0.00 0.00 5.01
264 268 4.120589 CCTTAACTTATCTCTTCGCACCC 58.879 47.826 0.00 0.00 0.00 4.61
266 270 0.831307 ACTTATCTCTTCGCACCCCC 59.169 55.000 0.00 0.00 0.00 5.40
267 271 1.123928 CTTATCTCTTCGCACCCCCT 58.876 55.000 0.00 0.00 0.00 4.79
268 272 1.069358 CTTATCTCTTCGCACCCCCTC 59.931 57.143 0.00 0.00 0.00 4.30
269 273 0.759436 TATCTCTTCGCACCCCCTCC 60.759 60.000 0.00 0.00 0.00 4.30
270 274 3.787001 CTCTTCGCACCCCCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
298 302 2.004270 CCCTATTTCAACCGGGGGT 58.996 57.895 6.32 0.00 37.65 4.95
299 303 0.395173 CCCTATTTCAACCGGGGGTG 60.395 60.000 6.32 0.17 35.34 4.61
300 304 0.395173 CCTATTTCAACCGGGGGTGG 60.395 60.000 6.32 0.00 35.34 4.61
301 305 0.395173 CTATTTCAACCGGGGGTGGG 60.395 60.000 6.32 0.00 35.34 4.61
320 398 0.478942 GGCCCTCCCCTTATTTCCTC 59.521 60.000 0.00 0.00 0.00 3.71
323 401 2.640332 GCCCTCCCCTTATTTCCTCTAG 59.360 54.545 0.00 0.00 0.00 2.43
324 402 2.640332 CCCTCCCCTTATTTCCTCTAGC 59.360 54.545 0.00 0.00 0.00 3.42
325 403 2.640332 CCTCCCCTTATTTCCTCTAGCC 59.360 54.545 0.00 0.00 0.00 3.93
331 409 5.298347 CCCTTATTTCCTCTAGCCTAAACG 58.702 45.833 0.00 0.00 0.00 3.60
334 412 2.667473 TTCCTCTAGCCTAAACGTGC 57.333 50.000 0.00 0.00 0.00 5.34
335 413 0.822164 TCCTCTAGCCTAAACGTGCC 59.178 55.000 0.00 0.00 0.00 5.01
336 414 0.535335 CCTCTAGCCTAAACGTGCCA 59.465 55.000 0.00 0.00 0.00 4.92
337 415 1.139058 CCTCTAGCCTAAACGTGCCAT 59.861 52.381 0.00 0.00 0.00 4.40
338 416 2.205074 CTCTAGCCTAAACGTGCCATG 58.795 52.381 0.00 0.00 0.00 3.66
339 417 1.553248 TCTAGCCTAAACGTGCCATGT 59.447 47.619 0.00 0.00 0.00 3.21
340 418 2.761767 TCTAGCCTAAACGTGCCATGTA 59.238 45.455 0.00 0.00 0.00 2.29
341 419 2.483014 AGCCTAAACGTGCCATGTAA 57.517 45.000 0.00 0.00 0.00 2.41
342 420 2.999331 AGCCTAAACGTGCCATGTAAT 58.001 42.857 0.00 0.00 0.00 1.89
343 421 2.943033 AGCCTAAACGTGCCATGTAATC 59.057 45.455 0.00 0.00 0.00 1.75
344 422 2.680841 GCCTAAACGTGCCATGTAATCA 59.319 45.455 0.00 0.00 0.00 2.57
345 423 3.242739 GCCTAAACGTGCCATGTAATCAG 60.243 47.826 0.00 0.00 0.00 2.90
346 424 3.938963 CCTAAACGTGCCATGTAATCAGT 59.061 43.478 0.00 0.00 0.00 3.41
347 425 4.394920 CCTAAACGTGCCATGTAATCAGTT 59.605 41.667 0.00 0.00 0.00 3.16
349 427 4.939509 AACGTGCCATGTAATCAGTTAC 57.060 40.909 0.00 0.00 40.48 2.50
350 428 2.927477 ACGTGCCATGTAATCAGTTACG 59.073 45.455 0.00 0.00 42.50 3.18
352 430 3.267483 GTGCCATGTAATCAGTTACGGT 58.733 45.455 0.00 0.00 42.50 4.83
354 432 4.871557 GTGCCATGTAATCAGTTACGGTAA 59.128 41.667 0.00 0.00 42.50 2.85
357 435 7.225145 GTGCCATGTAATCAGTTACGGTAATTA 59.775 37.037 3.59 0.00 42.50 1.40
358 436 7.225145 TGCCATGTAATCAGTTACGGTAATTAC 59.775 37.037 7.09 7.09 42.50 1.89
359 437 7.568134 GCCATGTAATCAGTTACGGTAATTACG 60.568 40.741 9.46 7.55 42.50 3.18
361 439 9.449550 CATGTAATCAGTTACGGTAATTACGTA 57.550 33.333 9.46 11.55 44.93 3.57
362 440 9.669353 ATGTAATCAGTTACGGTAATTACGTAG 57.331 33.333 9.46 6.23 46.01 3.51
363 441 8.888716 TGTAATCAGTTACGGTAATTACGTAGA 58.111 33.333 9.46 9.02 46.01 2.59
364 442 9.716507 GTAATCAGTTACGGTAATTACGTAGAA 57.283 33.333 9.46 1.83 46.01 2.10
366 444 9.807649 AATCAGTTACGGTAATTACGTAGAAAT 57.192 29.630 9.46 1.34 46.01 2.17
367 445 8.841444 TCAGTTACGGTAATTACGTAGAAATC 57.159 34.615 9.46 5.65 46.01 2.17
368 446 7.915397 TCAGTTACGGTAATTACGTAGAAATCC 59.085 37.037 9.46 0.00 46.01 3.01
369 447 7.917505 CAGTTACGGTAATTACGTAGAAATCCT 59.082 37.037 9.46 4.13 46.01 3.24
370 448 8.470002 AGTTACGGTAATTACGTAGAAATCCTT 58.530 33.333 9.46 0.00 46.01 3.36
371 449 9.730420 GTTACGGTAATTACGTAGAAATCCTTA 57.270 33.333 9.46 0.00 46.01 2.69
372 450 9.730420 TTACGGTAATTACGTAGAAATCCTTAC 57.270 33.333 9.46 0.00 46.01 2.34
373 451 6.912591 ACGGTAATTACGTAGAAATCCTTACG 59.087 38.462 9.46 4.88 43.60 3.18
375 453 8.067784 CGGTAATTACGTAGAAATCCTTACGTA 58.932 37.037 9.46 11.48 45.65 3.57
379 457 5.240713 ACGTAGAAATCCTTACGTAGGTG 57.759 43.478 7.79 0.00 45.65 4.00
380 458 4.702131 ACGTAGAAATCCTTACGTAGGTGT 59.298 41.667 7.79 0.00 45.65 4.16
381 459 5.880332 ACGTAGAAATCCTTACGTAGGTGTA 59.120 40.000 7.79 0.00 45.65 2.90
382 460 6.037610 ACGTAGAAATCCTTACGTAGGTGTAG 59.962 42.308 7.79 0.00 45.65 2.74
383 461 5.259832 AGAAATCCTTACGTAGGTGTAGC 57.740 43.478 3.84 0.00 45.03 3.58
384 462 4.708421 AGAAATCCTTACGTAGGTGTAGCA 59.292 41.667 3.84 0.00 45.03 3.49
385 463 5.363005 AGAAATCCTTACGTAGGTGTAGCAT 59.637 40.000 3.84 0.00 45.03 3.79
386 464 5.609533 AATCCTTACGTAGGTGTAGCATT 57.390 39.130 3.84 0.00 45.03 3.56
387 465 6.720112 AATCCTTACGTAGGTGTAGCATTA 57.280 37.500 3.84 0.00 45.03 1.90
388 466 5.505173 TCCTTACGTAGGTGTAGCATTAC 57.495 43.478 3.84 0.00 45.03 1.89
389 467 5.195940 TCCTTACGTAGGTGTAGCATTACT 58.804 41.667 3.84 0.00 45.03 2.24
390 468 5.066893 TCCTTACGTAGGTGTAGCATTACTG 59.933 44.000 3.84 0.00 45.03 2.74
391 469 3.795623 ACGTAGGTGTAGCATTACTGG 57.204 47.619 0.00 0.00 0.00 4.00
392 470 3.094572 ACGTAGGTGTAGCATTACTGGT 58.905 45.455 0.00 0.00 36.89 4.00
393 471 3.119245 ACGTAGGTGTAGCATTACTGGTG 60.119 47.826 0.00 0.00 34.31 4.17
394 472 3.119245 CGTAGGTGTAGCATTACTGGTGT 60.119 47.826 0.00 0.00 34.31 4.16
395 473 4.619863 CGTAGGTGTAGCATTACTGGTGTT 60.620 45.833 0.00 0.00 34.31 3.32
396 474 5.393352 CGTAGGTGTAGCATTACTGGTGTTA 60.393 44.000 0.00 0.00 34.31 2.41
400 478 7.626390 AGGTGTAGCATTACTGGTGTTAATAA 58.374 34.615 0.00 0.00 34.31 1.40
427 505 9.436957 CACTGGTAATTTTACTGTCTTCTGTAT 57.563 33.333 0.87 0.00 34.16 2.29
469 548 9.010029 TGGTGATTTCCTTATAGAAAGTTTGAC 57.990 33.333 0.00 0.00 39.04 3.18
476 555 8.857694 TCCTTATAGAAAGTTTGACGGAATTT 57.142 30.769 0.00 0.00 0.00 1.82
484 563 8.197439 AGAAAGTTTGACGGAATTTCAAGATTT 58.803 29.630 0.00 4.07 34.50 2.17
485 564 9.458374 GAAAGTTTGACGGAATTTCAAGATTTA 57.542 29.630 0.00 0.00 34.50 1.40
486 565 9.981114 AAAGTTTGACGGAATTTCAAGATTTAT 57.019 25.926 0.00 0.00 34.50 1.40
487 566 9.981114 AAGTTTGACGGAATTTCAAGATTTATT 57.019 25.926 0.00 0.00 34.50 1.40
492 571 8.629158 TGACGGAATTTCAAGATTTATTATGGG 58.371 33.333 0.00 0.00 0.00 4.00
493 572 8.533569 ACGGAATTTCAAGATTTATTATGGGT 57.466 30.769 0.00 0.00 0.00 4.51
494 573 8.977412 ACGGAATTTCAAGATTTATTATGGGTT 58.023 29.630 0.00 0.00 0.00 4.11
495 574 9.463443 CGGAATTTCAAGATTTATTATGGGTTC 57.537 33.333 0.00 0.00 0.00 3.62
500 579 9.921637 TTTCAAGATTTATTATGGGTTCAACAC 57.078 29.630 0.00 0.00 0.00 3.32
501 580 8.062065 TCAAGATTTATTATGGGTTCAACACC 57.938 34.615 0.00 0.00 46.46 4.16
502 581 7.893302 TCAAGATTTATTATGGGTTCAACACCT 59.107 33.333 0.00 0.00 46.38 4.00
503 582 8.531146 CAAGATTTATTATGGGTTCAACACCTT 58.469 33.333 0.00 0.00 46.38 3.50
504 583 8.664669 AGATTTATTATGGGTTCAACACCTTT 57.335 30.769 0.00 0.00 46.38 3.11
505 584 8.749354 AGATTTATTATGGGTTCAACACCTTTC 58.251 33.333 0.00 0.00 46.38 2.62
506 585 6.503589 TTATTATGGGTTCAACACCTTTCG 57.496 37.500 0.00 0.00 46.38 3.46
507 586 0.958822 ATGGGTTCAACACCTTTCGC 59.041 50.000 0.00 0.00 46.38 4.70
508 587 0.394488 TGGGTTCAACACCTTTCGCA 60.394 50.000 0.00 0.00 46.38 5.10
509 588 0.741915 GGGTTCAACACCTTTCGCAA 59.258 50.000 0.00 0.00 46.38 4.85
510 589 1.135333 GGGTTCAACACCTTTCGCAAA 59.865 47.619 0.00 0.00 46.38 3.68
511 590 2.417515 GGGTTCAACACCTTTCGCAAAA 60.418 45.455 0.00 0.00 46.38 2.44
512 591 3.254892 GGTTCAACACCTTTCGCAAAAA 58.745 40.909 0.00 0.00 43.29 1.94
600 679 2.507452 TGGATGAGCCATCTGCCG 59.493 61.111 12.89 0.00 43.33 5.69
637 716 0.395586 ATGCAAATGCCGGAGCCTTA 60.396 50.000 5.05 0.00 41.18 2.69
767 856 3.250762 TGTTGATGGAAAGAGAAAGCGTG 59.749 43.478 0.00 0.00 0.00 5.34
773 862 3.181469 TGGAAAGAGAAAGCGTGTGTACT 60.181 43.478 0.00 0.00 0.00 2.73
967 1056 4.590400 AAAGACGAGATCAAATCAAGCG 57.410 40.909 0.00 0.00 0.00 4.68
1287 1401 7.553334 GGTATACTTACCACTGATGAACTTCA 58.447 38.462 2.25 0.00 46.24 3.02
1288 1402 8.204836 GGTATACTTACCACTGATGAACTTCAT 58.795 37.037 3.80 3.80 46.24 2.57
1291 1405 9.988815 ATACTTACCACTGATGAACTTCATATC 57.011 33.333 4.16 0.00 37.20 1.63
1292 1406 7.851228 ACTTACCACTGATGAACTTCATATCA 58.149 34.615 4.16 0.15 37.20 2.15
1293 1407 8.489489 ACTTACCACTGATGAACTTCATATCAT 58.511 33.333 4.16 0.00 37.20 2.45
1343 1457 1.891060 GCGTCCATGGCGATCGATTC 61.891 60.000 26.00 7.94 0.00 2.52
1546 1715 2.235546 GACAGTTTCGACCACCAGC 58.764 57.895 0.00 0.00 0.00 4.85
1775 1953 2.716828 CGCACAGCAACTACGACGG 61.717 63.158 0.00 0.00 0.00 4.79
1908 2086 1.058438 CGAGTACGACCACGAGACG 59.942 63.158 0.00 0.00 42.66 4.18
2050 2234 8.925700 GCTGGGAAAGTAAATTAAGAAACAATG 58.074 33.333 0.00 0.00 0.00 2.82
2051 2235 9.423061 CTGGGAAAGTAAATTAAGAAACAATGG 57.577 33.333 0.00 0.00 0.00 3.16
2052 2236 7.875554 TGGGAAAGTAAATTAAGAAACAATGGC 59.124 33.333 0.00 0.00 0.00 4.40
2053 2237 7.333423 GGGAAAGTAAATTAAGAAACAATGGCC 59.667 37.037 0.00 0.00 0.00 5.36
2054 2238 7.062956 GGAAAGTAAATTAAGAAACAATGGCCG 59.937 37.037 0.00 0.00 0.00 6.13
2055 2239 6.827586 AGTAAATTAAGAAACAATGGCCGA 57.172 33.333 0.00 0.00 0.00 5.54
2056 2240 7.404671 AGTAAATTAAGAAACAATGGCCGAT 57.595 32.000 0.00 0.00 0.00 4.18
2173 2361 7.197071 TCCATGTTTGATACACACAAGTAAC 57.803 36.000 0.00 0.00 40.19 2.50
2186 2374 2.628657 ACAAGTAACGAGTCAAGCCTCT 59.371 45.455 0.00 0.00 0.00 3.69
2249 2443 0.391661 ATGCACGCACCTCCTTGTAG 60.392 55.000 0.00 0.00 0.00 2.74
2268 2463 1.668151 GCTGAAACGTCGAAGGGCT 60.668 57.895 0.00 0.00 0.00 5.19
2294 2489 1.134699 CAGCGACAGGGATTTAGCAGA 60.135 52.381 0.00 0.00 0.00 4.26
2590 2834 6.055588 AGCAACTACAAGCTTCAGTTAGAAA 58.944 36.000 18.17 0.00 38.01 2.52
2626 2870 0.732571 CATTTGATGGCGCCTACGTT 59.267 50.000 29.70 7.07 42.83 3.99
2632 2876 1.332144 ATGGCGCCTACGTTTAGGGA 61.332 55.000 29.70 1.81 44.91 4.20
2660 2904 7.285783 CAGCATTACTGGAAATGAATTGTTG 57.714 36.000 8.61 0.00 43.19 3.33
2661 2905 7.092079 CAGCATTACTGGAAATGAATTGTTGA 58.908 34.615 8.61 0.00 43.19 3.18
2662 2906 7.062605 CAGCATTACTGGAAATGAATTGTTGAC 59.937 37.037 8.61 0.00 43.19 3.18
2663 2907 7.039504 AGCATTACTGGAAATGAATTGTTGACT 60.040 33.333 8.61 0.00 38.84 3.41
2664 2908 7.599998 GCATTACTGGAAATGAATTGTTGACTT 59.400 33.333 8.61 0.00 38.84 3.01
2665 2909 8.918658 CATTACTGGAAATGAATTGTTGACTTG 58.081 33.333 0.00 0.00 38.84 3.16
2666 2910 6.469782 ACTGGAAATGAATTGTTGACTTGT 57.530 33.333 0.00 0.00 0.00 3.16
2667 2911 6.877236 ACTGGAAATGAATTGTTGACTTGTT 58.123 32.000 0.00 0.00 0.00 2.83
2668 2912 8.006298 ACTGGAAATGAATTGTTGACTTGTTA 57.994 30.769 0.00 0.00 0.00 2.41
2669 2913 8.137437 ACTGGAAATGAATTGTTGACTTGTTAG 58.863 33.333 0.00 0.00 0.00 2.34
2670 2914 8.006298 TGGAAATGAATTGTTGACTTGTTAGT 57.994 30.769 0.00 0.00 37.31 2.24
2671 2915 7.920151 TGGAAATGAATTGTTGACTTGTTAGTG 59.080 33.333 0.00 0.00 33.84 2.74
2672 2916 7.920682 GGAAATGAATTGTTGACTTGTTAGTGT 59.079 33.333 0.00 0.00 33.84 3.55
2673 2917 9.301153 GAAATGAATTGTTGACTTGTTAGTGTT 57.699 29.630 0.00 0.00 33.84 3.32
2678 2922 9.543018 GAATTGTTGACTTGTTAGTGTTATAGC 57.457 33.333 0.00 0.00 33.84 2.97
2679 2923 7.429636 TTGTTGACTTGTTAGTGTTATAGCC 57.570 36.000 0.00 0.00 33.84 3.93
2680 2924 5.935789 TGTTGACTTGTTAGTGTTATAGCCC 59.064 40.000 0.00 0.00 33.84 5.19
2681 2925 4.751060 TGACTTGTTAGTGTTATAGCCCG 58.249 43.478 0.00 0.00 33.84 6.13
2682 2926 4.463539 TGACTTGTTAGTGTTATAGCCCGA 59.536 41.667 0.00 0.00 33.84 5.14
2683 2927 5.047164 TGACTTGTTAGTGTTATAGCCCGAA 60.047 40.000 0.00 0.00 33.84 4.30
2684 2928 5.797051 ACTTGTTAGTGTTATAGCCCGAAA 58.203 37.500 0.00 0.00 31.99 3.46
2685 2929 6.232692 ACTTGTTAGTGTTATAGCCCGAAAA 58.767 36.000 0.00 0.00 31.99 2.29
2686 2930 6.711645 ACTTGTTAGTGTTATAGCCCGAAAAA 59.288 34.615 0.00 0.00 31.99 1.94
2792 3042 5.889853 AGTAATTGCATGATCAAGACATGGT 59.110 36.000 0.00 0.00 43.39 3.55
2793 3043 4.649088 ATTGCATGATCAAGACATGGTG 57.351 40.909 0.00 0.00 43.39 4.17
2794 3044 2.371306 TGCATGATCAAGACATGGTGG 58.629 47.619 0.00 0.00 43.39 4.61
2795 3045 1.066605 GCATGATCAAGACATGGTGGC 59.933 52.381 0.00 0.00 43.39 5.01
2796 3046 2.651455 CATGATCAAGACATGGTGGCT 58.349 47.619 0.00 0.00 37.28 4.75
2797 3047 2.118313 TGATCAAGACATGGTGGCTG 57.882 50.000 0.00 0.00 31.94 4.85
2798 3048 0.737219 GATCAAGACATGGTGGCTGC 59.263 55.000 0.00 0.00 31.94 5.25
2799 3049 0.330604 ATCAAGACATGGTGGCTGCT 59.669 50.000 0.00 0.00 31.94 4.24
2800 3050 0.607217 TCAAGACATGGTGGCTGCTG 60.607 55.000 0.00 0.00 31.94 4.41
2801 3051 1.303888 AAGACATGGTGGCTGCTGG 60.304 57.895 0.00 0.00 31.94 4.85
2802 3052 2.034687 GACATGGTGGCTGCTGGT 59.965 61.111 0.00 0.00 0.00 4.00
2803 3053 1.604593 GACATGGTGGCTGCTGGTT 60.605 57.895 0.00 0.00 0.00 3.67
2804 3054 0.322456 GACATGGTGGCTGCTGGTTA 60.322 55.000 0.00 0.00 0.00 2.85
2805 3055 0.609131 ACATGGTGGCTGCTGGTTAC 60.609 55.000 0.00 0.00 0.00 2.50
2806 3056 0.608856 CATGGTGGCTGCTGGTTACA 60.609 55.000 0.00 0.00 0.00 2.41
2807 3057 0.332632 ATGGTGGCTGCTGGTTACAT 59.667 50.000 0.00 0.00 0.00 2.29
2808 3058 0.322456 TGGTGGCTGCTGGTTACATC 60.322 55.000 0.00 0.00 0.00 3.06
2809 3059 0.322456 GGTGGCTGCTGGTTACATCA 60.322 55.000 0.00 0.00 0.00 3.07
2810 3060 1.683011 GGTGGCTGCTGGTTACATCAT 60.683 52.381 0.00 0.00 0.00 2.45
2811 3061 1.402968 GTGGCTGCTGGTTACATCATG 59.597 52.381 0.00 0.00 0.00 3.07
2812 3062 1.281577 TGGCTGCTGGTTACATCATGA 59.718 47.619 0.00 0.00 0.00 3.07
2813 3063 1.945394 GGCTGCTGGTTACATCATGAG 59.055 52.381 0.09 0.00 0.00 2.90
2814 3064 2.420547 GGCTGCTGGTTACATCATGAGA 60.421 50.000 0.09 0.00 0.00 3.27
2815 3065 2.871022 GCTGCTGGTTACATCATGAGAG 59.129 50.000 0.09 0.00 0.00 3.20
2816 3066 3.431346 GCTGCTGGTTACATCATGAGAGA 60.431 47.826 0.09 0.00 0.00 3.10
2817 3067 4.370049 CTGCTGGTTACATCATGAGAGAG 58.630 47.826 0.09 0.00 0.00 3.20
2818 3068 4.026052 TGCTGGTTACATCATGAGAGAGA 58.974 43.478 0.09 0.00 0.00 3.10
2819 3069 4.099113 TGCTGGTTACATCATGAGAGAGAG 59.901 45.833 0.09 0.00 0.00 3.20
2820 3070 4.099266 GCTGGTTACATCATGAGAGAGAGT 59.901 45.833 0.09 0.00 0.00 3.24
2821 3071 5.588958 TGGTTACATCATGAGAGAGAGTG 57.411 43.478 0.09 0.00 0.00 3.51
2822 3072 5.264395 TGGTTACATCATGAGAGAGAGTGA 58.736 41.667 0.09 0.00 0.00 3.41
2823 3073 5.359292 TGGTTACATCATGAGAGAGAGTGAG 59.641 44.000 0.09 0.00 0.00 3.51
2824 3074 5.221224 GGTTACATCATGAGAGAGAGTGAGG 60.221 48.000 0.09 0.00 0.00 3.86
2825 3075 3.298619 ACATCATGAGAGAGAGTGAGGG 58.701 50.000 0.09 0.00 0.00 4.30
2826 3076 1.774110 TCATGAGAGAGAGTGAGGGC 58.226 55.000 0.00 0.00 0.00 5.19
2827 3077 0.385029 CATGAGAGAGAGTGAGGGCG 59.615 60.000 0.00 0.00 0.00 6.13
2828 3078 0.257328 ATGAGAGAGAGTGAGGGCGA 59.743 55.000 0.00 0.00 0.00 5.54
2829 3079 0.678366 TGAGAGAGAGTGAGGGCGAC 60.678 60.000 0.00 0.00 0.00 5.19
2830 3080 1.711060 GAGAGAGAGTGAGGGCGACG 61.711 65.000 0.00 0.00 0.00 5.12
2831 3081 2.752238 AGAGAGTGAGGGCGACGG 60.752 66.667 0.00 0.00 0.00 4.79
2832 3082 3.827898 GAGAGTGAGGGCGACGGG 61.828 72.222 0.00 0.00 0.00 5.28
2840 3090 4.832608 GGGCGACGGGGTGACATC 62.833 72.222 0.00 0.00 0.00 3.06
2841 3091 4.077184 GGCGACGGGGTGACATCA 62.077 66.667 0.00 0.00 0.00 3.07
2842 3092 2.186903 GCGACGGGGTGACATCAT 59.813 61.111 0.00 0.00 0.00 2.45
2843 3093 2.173669 GCGACGGGGTGACATCATG 61.174 63.158 0.00 0.00 0.00 3.07
2844 3094 2.173669 CGACGGGGTGACATCATGC 61.174 63.158 0.00 0.00 0.00 4.06
2845 3095 1.221840 GACGGGGTGACATCATGCT 59.778 57.895 0.00 0.00 0.00 3.79
2846 3096 1.078214 ACGGGGTGACATCATGCTG 60.078 57.895 0.00 0.00 0.00 4.41
2847 3097 1.221566 CGGGGTGACATCATGCTGA 59.778 57.895 3.02 0.00 0.00 4.26
2848 3098 0.812811 CGGGGTGACATCATGCTGAG 60.813 60.000 3.02 0.00 0.00 3.35
2849 3099 0.543277 GGGGTGACATCATGCTGAGA 59.457 55.000 3.02 0.00 0.00 3.27
2850 3100 1.065199 GGGGTGACATCATGCTGAGAA 60.065 52.381 3.02 0.00 0.00 2.87
2851 3101 2.286872 GGGTGACATCATGCTGAGAAG 58.713 52.381 3.02 0.00 0.00 2.85
2852 3102 2.286872 GGTGACATCATGCTGAGAAGG 58.713 52.381 3.02 0.00 0.00 3.46
2853 3103 1.669779 GTGACATCATGCTGAGAAGGC 59.330 52.381 3.02 0.00 0.00 4.35
2854 3104 1.307097 GACATCATGCTGAGAAGGCC 58.693 55.000 3.02 0.00 0.00 5.19
2855 3105 0.917533 ACATCATGCTGAGAAGGCCT 59.082 50.000 0.00 0.00 0.00 5.19
2856 3106 1.309950 CATCATGCTGAGAAGGCCTG 58.690 55.000 5.69 0.00 0.00 4.85
2857 3107 0.465824 ATCATGCTGAGAAGGCCTGC 60.466 55.000 5.69 3.13 0.00 4.85
2858 3108 1.378119 CATGCTGAGAAGGCCTGCA 60.378 57.895 15.05 15.74 41.46 4.41
2859 3109 0.752009 CATGCTGAGAAGGCCTGCAT 60.752 55.000 19.08 19.08 45.70 3.96
2860 3110 0.465824 ATGCTGAGAAGGCCTGCATC 60.466 55.000 19.08 12.33 42.78 3.91
2861 3111 1.823041 GCTGAGAAGGCCTGCATCC 60.823 63.158 15.05 1.83 0.00 3.51
2862 3112 1.153005 CTGAGAAGGCCTGCATCCC 60.153 63.158 15.05 0.00 0.00 3.85
2863 3113 2.203126 GAGAAGGCCTGCATCCCG 60.203 66.667 15.05 0.00 0.00 5.14
2864 3114 2.688666 AGAAGGCCTGCATCCCGA 60.689 61.111 15.05 0.00 0.00 5.14
2865 3115 2.514824 GAAGGCCTGCATCCCGAC 60.515 66.667 5.69 0.00 0.00 4.79
2866 3116 4.473520 AAGGCCTGCATCCCGACG 62.474 66.667 5.69 0.00 0.00 5.12
2874 3124 3.822192 CATCCCGACGCGAGGTGA 61.822 66.667 15.93 14.84 0.00 4.02
2875 3125 3.823330 ATCCCGACGCGAGGTGAC 61.823 66.667 15.93 0.00 0.00 3.67
2878 3128 4.813526 CCGACGCGAGGTGACGAG 62.814 72.222 15.93 0.00 38.84 4.18
2879 3129 4.813526 CGACGCGAGGTGACGAGG 62.814 72.222 15.93 0.00 37.39 4.63
2880 3130 3.735029 GACGCGAGGTGACGAGGT 61.735 66.667 15.93 0.00 37.39 3.85
2881 3131 3.948086 GACGCGAGGTGACGAGGTG 62.948 68.421 15.93 0.00 37.39 4.00
2882 3132 4.778415 CGCGAGGTGACGAGGTGG 62.778 72.222 0.00 0.00 35.09 4.61
2884 3134 3.680786 CGAGGTGACGAGGTGGCA 61.681 66.667 0.00 0.00 35.09 4.92
2885 3135 2.982130 GAGGTGACGAGGTGGCAT 59.018 61.111 0.00 0.00 0.00 4.40
2886 3136 1.153549 GAGGTGACGAGGTGGCATC 60.154 63.158 0.00 0.00 0.00 3.91
2887 3137 2.125106 GGTGACGAGGTGGCATCC 60.125 66.667 0.00 0.00 0.00 3.51
2888 3138 2.662596 GTGACGAGGTGGCATCCA 59.337 61.111 0.00 0.00 0.00 3.41
2896 3146 2.813908 GTGGCATCCACGGTCGAC 60.814 66.667 7.13 7.13 44.95 4.20
2908 3158 4.194720 GTCGACGCGATCCTGCCT 62.195 66.667 15.93 0.00 38.42 4.75
2909 3159 3.889044 TCGACGCGATCCTGCCTC 61.889 66.667 15.93 0.00 0.00 4.70
2910 3160 4.933064 CGACGCGATCCTGCCTCC 62.933 72.222 15.93 0.00 0.00 4.30
2911 3161 4.593864 GACGCGATCCTGCCTCCC 62.594 72.222 15.93 0.00 0.00 4.30
2914 3164 4.593864 GCGATCCTGCCTCCCGAC 62.594 72.222 0.00 0.00 0.00 4.79
2915 3165 4.271816 CGATCCTGCCTCCCGACG 62.272 72.222 0.00 0.00 0.00 5.12
2916 3166 2.833582 GATCCTGCCTCCCGACGA 60.834 66.667 0.00 0.00 0.00 4.20
2917 3167 2.123251 ATCCTGCCTCCCGACGAT 60.123 61.111 0.00 0.00 0.00 3.73
2918 3168 2.148558 GATCCTGCCTCCCGACGATC 62.149 65.000 0.00 0.00 0.00 3.69
2919 3169 3.917760 CCTGCCTCCCGACGATCC 61.918 72.222 0.00 0.00 0.00 3.36
2920 3170 4.271816 CTGCCTCCCGACGATCCG 62.272 72.222 0.00 0.00 0.00 4.18
2927 3177 3.671411 CCGACGATCCGGCTAGGG 61.671 72.222 0.00 0.00 43.25 3.53
2928 3178 2.905880 CGACGATCCGGCTAGGGT 60.906 66.667 0.00 0.00 41.52 4.34
2929 3179 2.487532 CGACGATCCGGCTAGGGTT 61.488 63.158 0.00 0.00 41.52 4.11
2930 3180 1.067582 GACGATCCGGCTAGGGTTG 59.932 63.158 0.00 0.00 40.57 3.77
2931 3181 2.365095 GACGATCCGGCTAGGGTTGG 62.365 65.000 0.00 0.00 38.94 3.77
2932 3182 2.131709 CGATCCGGCTAGGGTTGGA 61.132 63.158 0.00 0.00 41.52 3.53
2933 3183 1.472662 CGATCCGGCTAGGGTTGGAT 61.473 60.000 0.00 0.00 43.75 3.41
2934 3184 0.765510 GATCCGGCTAGGGTTGGATT 59.234 55.000 0.00 0.00 41.21 3.01
2935 3185 1.975680 GATCCGGCTAGGGTTGGATTA 59.024 52.381 0.00 0.00 41.21 1.75
2936 3186 1.125633 TCCGGCTAGGGTTGGATTAC 58.874 55.000 0.00 0.00 41.52 1.89
2937 3187 0.834612 CCGGCTAGGGTTGGATTACA 59.165 55.000 0.00 0.00 35.97 2.41
2938 3188 1.474498 CCGGCTAGGGTTGGATTACAC 60.474 57.143 0.00 0.00 35.97 2.90
2939 3189 1.805120 CGGCTAGGGTTGGATTACACG 60.805 57.143 0.00 0.00 0.00 4.49
2940 3190 1.296727 GCTAGGGTTGGATTACACGC 58.703 55.000 0.00 0.00 0.00 5.34
2941 3191 1.567504 CTAGGGTTGGATTACACGCG 58.432 55.000 3.53 3.53 0.00 6.01
2942 3192 0.176219 TAGGGTTGGATTACACGCGG 59.824 55.000 12.47 1.27 0.00 6.46
2943 3193 2.110352 GGGTTGGATTACACGCGGG 61.110 63.158 6.92 6.92 0.00 6.13
2944 3194 1.376295 GGTTGGATTACACGCGGGT 60.376 57.895 21.93 21.93 0.00 5.28
2954 3204 2.657237 ACGCGGGTGAGAAGAAGG 59.343 61.111 12.47 0.00 0.00 3.46
2955 3205 1.906824 ACGCGGGTGAGAAGAAGGA 60.907 57.895 12.47 0.00 0.00 3.36
2956 3206 1.153745 CGCGGGTGAGAAGAAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
2957 3207 1.595993 CGCGGGTGAGAAGAAGGAGA 61.596 60.000 0.00 0.00 0.00 3.71
2958 3208 0.827368 GCGGGTGAGAAGAAGGAGAT 59.173 55.000 0.00 0.00 0.00 2.75
2959 3209 1.472376 GCGGGTGAGAAGAAGGAGATG 60.472 57.143 0.00 0.00 0.00 2.90
2960 3210 1.137872 CGGGTGAGAAGAAGGAGATGG 59.862 57.143 0.00 0.00 0.00 3.51
2961 3211 2.192263 GGGTGAGAAGAAGGAGATGGT 58.808 52.381 0.00 0.00 0.00 3.55
2962 3212 2.573915 GGGTGAGAAGAAGGAGATGGTT 59.426 50.000 0.00 0.00 0.00 3.67
2963 3213 3.369997 GGGTGAGAAGAAGGAGATGGTTC 60.370 52.174 0.00 0.00 0.00 3.62
2964 3214 3.516615 GTGAGAAGAAGGAGATGGTTCG 58.483 50.000 0.00 0.00 0.00 3.95
2965 3215 3.056465 GTGAGAAGAAGGAGATGGTTCGT 60.056 47.826 0.00 0.00 0.00 3.85
2966 3216 3.193691 TGAGAAGAAGGAGATGGTTCGTC 59.806 47.826 0.00 0.00 33.06 4.20
2967 3217 2.164624 AGAAGAAGGAGATGGTTCGTCG 59.835 50.000 0.00 0.00 36.60 5.12
2968 3218 1.546961 AGAAGGAGATGGTTCGTCGT 58.453 50.000 0.00 0.00 0.00 4.34
2969 3219 1.202582 AGAAGGAGATGGTTCGTCGTG 59.797 52.381 0.00 0.00 0.00 4.35
2970 3220 0.966920 AAGGAGATGGTTCGTCGTGT 59.033 50.000 0.00 0.00 0.00 4.49
2971 3221 0.526662 AGGAGATGGTTCGTCGTGTC 59.473 55.000 0.00 0.00 0.00 3.67
2972 3222 0.797249 GGAGATGGTTCGTCGTGTCG 60.797 60.000 0.00 0.00 0.00 4.35
2973 3223 0.109873 GAGATGGTTCGTCGTGTCGT 60.110 55.000 0.00 0.00 0.00 4.34
2974 3224 0.313043 AGATGGTTCGTCGTGTCGTT 59.687 50.000 0.00 0.00 0.00 3.85
2975 3225 0.706729 GATGGTTCGTCGTGTCGTTC 59.293 55.000 0.00 0.00 0.00 3.95
2976 3226 0.031043 ATGGTTCGTCGTGTCGTTCA 59.969 50.000 0.00 0.00 0.00 3.18
2977 3227 0.031043 TGGTTCGTCGTGTCGTTCAT 59.969 50.000 0.00 0.00 0.00 2.57
2978 3228 0.706729 GGTTCGTCGTGTCGTTCATC 59.293 55.000 0.00 0.00 0.00 2.92
2979 3229 0.357894 GTTCGTCGTGTCGTTCATCG 59.642 55.000 0.00 0.00 41.41 3.84
2980 3230 0.235404 TTCGTCGTGTCGTTCATCGA 59.765 50.000 0.00 0.00 46.83 3.59
2988 3238 1.153901 TCGTTCATCGAAGGACGGC 60.154 57.895 20.30 0.00 45.98 5.68
2989 3239 2.505498 CGTTCATCGAAGGACGGCG 61.505 63.158 13.55 4.80 42.86 6.46
2990 3240 2.165301 GTTCATCGAAGGACGGCGG 61.165 63.158 13.24 0.00 42.82 6.13
2991 3241 4.508128 TCATCGAAGGACGGCGGC 62.508 66.667 13.24 8.60 42.82 6.53
2992 3242 4.514577 CATCGAAGGACGGCGGCT 62.515 66.667 14.66 0.00 42.82 5.52
2993 3243 4.514577 ATCGAAGGACGGCGGCTG 62.515 66.667 14.66 7.39 42.82 4.85
3008 3258 2.203167 CTGCTGCGATCAGGCCAT 60.203 61.111 5.01 0.00 40.65 4.40
3009 3259 2.515290 TGCTGCGATCAGGCCATG 60.515 61.111 5.01 0.00 40.65 3.66
3010 3260 3.285215 GCTGCGATCAGGCCATGG 61.285 66.667 7.63 7.63 40.65 3.66
3011 3261 2.507452 CTGCGATCAGGCCATGGA 59.493 61.111 18.40 0.00 36.68 3.41
3012 3262 1.153107 CTGCGATCAGGCCATGGAA 60.153 57.895 18.40 0.00 36.68 3.53
3013 3263 1.153107 TGCGATCAGGCCATGGAAG 60.153 57.895 18.40 3.81 0.00 3.46
3014 3264 1.895707 GCGATCAGGCCATGGAAGG 60.896 63.158 18.40 2.95 0.00 3.46
3015 3265 1.228063 CGATCAGGCCATGGAAGGG 60.228 63.158 18.40 0.89 43.76 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.797033 CCGACTACTTTGTTTGAATGATCAAC 59.203 38.462 0.00 0.00 45.01 3.18
43 44 7.749126 GGTTTATCCGACTACTTTGTTTGAATG 59.251 37.037 0.00 0.00 0.00 2.67
61 62 6.679843 TGTCGGTGTTTATTTTGGTTTATCC 58.320 36.000 0.00 0.00 0.00 2.59
66 67 8.943909 TTTTATTGTCGGTGTTTATTTTGGTT 57.056 26.923 0.00 0.00 0.00 3.67
77 78 6.773976 ATCATGGATTTTTATTGTCGGTGT 57.226 33.333 0.00 0.00 0.00 4.16
105 108 6.685403 CGACGAAACTTGATGTAACTTTTTGT 59.315 34.615 0.00 0.00 0.00 2.83
106 109 6.902948 TCGACGAAACTTGATGTAACTTTTTG 59.097 34.615 0.00 0.00 0.00 2.44
127 131 4.705337 AACTAGAGATGGTGACTTCGAC 57.295 45.455 0.00 0.00 39.38 4.20
161 165 4.445452 TGAGCATGGAGAAAAATCAAGC 57.555 40.909 0.00 0.00 0.00 4.01
164 168 8.843262 CATAGTATTGAGCATGGAGAAAAATCA 58.157 33.333 0.00 0.00 0.00 2.57
167 171 6.039717 GGCATAGTATTGAGCATGGAGAAAAA 59.960 38.462 0.00 0.00 0.00 1.94
186 190 8.506168 TTTTTCTATTAACACTGGAGGCATAG 57.494 34.615 0.00 0.00 0.00 2.23
188 192 7.631377 GCATTTTTCTATTAACACTGGAGGCAT 60.631 37.037 0.00 0.00 0.00 4.40
191 195 7.396540 AGCATTTTTCTATTAACACTGGAGG 57.603 36.000 0.00 0.00 0.00 4.30
193 197 7.067008 GCCTAGCATTTTTCTATTAACACTGGA 59.933 37.037 0.00 0.00 0.00 3.86
194 198 7.196331 GCCTAGCATTTTTCTATTAACACTGG 58.804 38.462 0.00 0.00 0.00 4.00
195 199 7.067494 AGGCCTAGCATTTTTCTATTAACACTG 59.933 37.037 1.29 0.00 0.00 3.66
197 201 7.334844 AGGCCTAGCATTTTTCTATTAACAC 57.665 36.000 1.29 0.00 0.00 3.32
198 202 7.225931 CGTAGGCCTAGCATTTTTCTATTAACA 59.774 37.037 14.38 0.00 0.00 2.41
200 204 7.277396 ACGTAGGCCTAGCATTTTTCTATTAA 58.723 34.615 14.38 0.00 0.00 1.40
201 205 6.823497 ACGTAGGCCTAGCATTTTTCTATTA 58.177 36.000 14.38 0.00 0.00 0.98
204 208 4.748277 ACGTAGGCCTAGCATTTTTCTA 57.252 40.909 14.38 0.00 0.00 2.10
205 209 3.629142 ACGTAGGCCTAGCATTTTTCT 57.371 42.857 14.38 0.00 0.00 2.52
206 210 5.353400 ACTTTACGTAGGCCTAGCATTTTTC 59.647 40.000 14.38 0.00 0.00 2.29
210 214 4.482952 AACTTTACGTAGGCCTAGCATT 57.517 40.909 14.38 0.00 0.00 3.56
212 216 4.376340 GTAACTTTACGTAGGCCTAGCA 57.624 45.455 14.38 0.00 0.00 3.49
229 233 8.471361 AGATAAGTTAAGGCAAGTTACGTAAC 57.529 34.615 27.23 27.23 35.37 2.50
231 235 8.059798 AGAGATAAGTTAAGGCAAGTTACGTA 57.940 34.615 0.00 0.00 35.37 3.57
232 236 6.932947 AGAGATAAGTTAAGGCAAGTTACGT 58.067 36.000 0.00 0.00 35.37 3.57
233 237 7.253684 CGAAGAGATAAGTTAAGGCAAGTTACG 60.254 40.741 0.00 0.00 35.37 3.18
236 240 5.351740 GCGAAGAGATAAGTTAAGGCAAGTT 59.648 40.000 0.00 0.00 34.15 2.66
237 241 4.870991 GCGAAGAGATAAGTTAAGGCAAGT 59.129 41.667 0.00 0.00 0.00 3.16
240 244 4.181578 GTGCGAAGAGATAAGTTAAGGCA 58.818 43.478 0.00 0.00 0.00 4.75
241 245 3.556365 GGTGCGAAGAGATAAGTTAAGGC 59.444 47.826 0.00 0.00 0.00 4.35
242 246 4.120589 GGGTGCGAAGAGATAAGTTAAGG 58.879 47.826 0.00 0.00 0.00 2.69
244 248 3.118519 GGGGGTGCGAAGAGATAAGTTAA 60.119 47.826 0.00 0.00 0.00 2.01
246 250 1.209747 GGGGGTGCGAAGAGATAAGTT 59.790 52.381 0.00 0.00 0.00 2.66
247 251 0.831307 GGGGGTGCGAAGAGATAAGT 59.169 55.000 0.00 0.00 0.00 2.24
249 253 1.120530 GAGGGGGTGCGAAGAGATAA 58.879 55.000 0.00 0.00 0.00 1.75
250 254 0.759436 GGAGGGGGTGCGAAGAGATA 60.759 60.000 0.00 0.00 0.00 1.98
251 255 2.066999 GGAGGGGGTGCGAAGAGAT 61.067 63.158 0.00 0.00 0.00 2.75
252 256 2.683933 GGAGGGGGTGCGAAGAGA 60.684 66.667 0.00 0.00 0.00 3.10
280 284 0.395173 CACCCCCGGTTGAAATAGGG 60.395 60.000 0.00 3.26 43.41 3.53
282 286 0.395173 CCCACCCCCGGTTGAAATAG 60.395 60.000 0.00 0.00 31.02 1.73
283 287 1.692428 CCCACCCCCGGTTGAAATA 59.308 57.895 0.00 0.00 31.02 1.40
284 288 2.443324 CCCACCCCCGGTTGAAAT 59.557 61.111 0.00 0.00 31.02 2.17
301 305 0.478942 GAGGAAATAAGGGGAGGGCC 59.521 60.000 0.00 0.00 0.00 5.80
304 308 2.640332 GGCTAGAGGAAATAAGGGGAGG 59.360 54.545 0.00 0.00 0.00 4.30
305 309 3.592865 AGGCTAGAGGAAATAAGGGGAG 58.407 50.000 0.00 0.00 0.00 4.30
306 310 3.726837 AGGCTAGAGGAAATAAGGGGA 57.273 47.619 0.00 0.00 0.00 4.81
307 311 5.622180 GTTTAGGCTAGAGGAAATAAGGGG 58.378 45.833 0.00 0.00 0.00 4.79
308 312 5.163332 ACGTTTAGGCTAGAGGAAATAAGGG 60.163 44.000 11.21 0.00 0.00 3.95
309 313 5.753921 CACGTTTAGGCTAGAGGAAATAAGG 59.246 44.000 11.21 1.52 0.00 2.69
310 314 5.234543 GCACGTTTAGGCTAGAGGAAATAAG 59.765 44.000 11.21 0.00 0.00 1.73
317 395 0.535335 TGGCACGTTTAGGCTAGAGG 59.465 55.000 0.00 3.49 0.00 3.69
320 398 2.024176 ACATGGCACGTTTAGGCTAG 57.976 50.000 0.00 0.00 0.00 3.42
323 401 2.680841 TGATTACATGGCACGTTTAGGC 59.319 45.455 0.00 0.00 0.00 3.93
324 402 3.938963 ACTGATTACATGGCACGTTTAGG 59.061 43.478 0.00 0.00 0.00 2.69
325 403 5.545658 AACTGATTACATGGCACGTTTAG 57.454 39.130 0.00 0.00 0.00 1.85
331 409 3.267483 ACCGTAACTGATTACATGGCAC 58.733 45.455 0.00 0.00 40.77 5.01
334 412 7.436080 ACGTAATTACCGTAACTGATTACATGG 59.564 37.037 10.01 0.00 40.77 3.66
335 413 8.343974 ACGTAATTACCGTAACTGATTACATG 57.656 34.615 10.01 0.00 40.77 3.21
336 414 9.669353 CTACGTAATTACCGTAACTGATTACAT 57.331 33.333 10.01 1.99 40.77 2.29
337 415 8.888716 TCTACGTAATTACCGTAACTGATTACA 58.111 33.333 10.01 0.00 40.77 2.41
338 416 9.716507 TTCTACGTAATTACCGTAACTGATTAC 57.283 33.333 10.01 0.00 39.98 1.89
340 418 9.807649 ATTTCTACGTAATTACCGTAACTGATT 57.192 29.630 10.01 0.00 39.98 2.57
341 419 9.455847 GATTTCTACGTAATTACCGTAACTGAT 57.544 33.333 10.01 7.27 39.98 2.90
342 420 7.915397 GGATTTCTACGTAATTACCGTAACTGA 59.085 37.037 10.01 6.89 39.98 3.41
343 421 7.917505 AGGATTTCTACGTAATTACCGTAACTG 59.082 37.037 10.01 5.06 39.98 3.16
344 422 8.000780 AGGATTTCTACGTAATTACCGTAACT 57.999 34.615 10.01 0.00 39.98 2.24
345 423 8.634475 AAGGATTTCTACGTAATTACCGTAAC 57.366 34.615 10.01 5.52 39.98 2.50
346 424 9.730420 GTAAGGATTTCTACGTAATTACCGTAA 57.270 33.333 10.01 0.00 39.98 3.18
347 425 8.067784 CGTAAGGATTTCTACGTAATTACCGTA 58.932 37.037 10.01 13.06 39.60 4.02
349 427 6.912591 ACGTAAGGATTTCTACGTAATTACCG 59.087 38.462 10.01 7.77 45.65 4.02
350 428 9.387123 CTACGTAAGGATTTCTACGTAATTACC 57.613 37.037 10.01 0.00 46.28 2.85
369 447 4.706476 ACCAGTAATGCTACACCTACGTAA 59.294 41.667 0.00 0.00 0.00 3.18
370 448 4.096833 CACCAGTAATGCTACACCTACGTA 59.903 45.833 0.00 0.00 0.00 3.57
371 449 3.094572 ACCAGTAATGCTACACCTACGT 58.905 45.455 0.00 0.00 0.00 3.57
372 450 3.119245 ACACCAGTAATGCTACACCTACG 60.119 47.826 0.00 0.00 0.00 3.51
373 451 4.467198 ACACCAGTAATGCTACACCTAC 57.533 45.455 0.00 0.00 0.00 3.18
374 452 6.608539 TTAACACCAGTAATGCTACACCTA 57.391 37.500 0.00 0.00 0.00 3.08
375 453 5.492855 TTAACACCAGTAATGCTACACCT 57.507 39.130 0.00 0.00 0.00 4.00
376 454 7.334921 TGTTATTAACACCAGTAATGCTACACC 59.665 37.037 5.14 0.00 36.25 4.16
377 455 8.259049 TGTTATTAACACCAGTAATGCTACAC 57.741 34.615 5.14 0.00 36.25 2.90
400 478 7.280356 ACAGAAGACAGTAAAATTACCAGTGT 58.720 34.615 0.00 0.00 34.19 3.55
458 537 6.693315 TCTTGAAATTCCGTCAAACTTTCT 57.307 33.333 0.00 0.00 34.68 2.52
466 545 8.629158 CCCATAATAAATCTTGAAATTCCGTCA 58.371 33.333 0.00 0.00 0.00 4.35
467 546 8.630037 ACCCATAATAAATCTTGAAATTCCGTC 58.370 33.333 0.00 0.00 0.00 4.79
469 548 9.463443 GAACCCATAATAAATCTTGAAATTCCG 57.537 33.333 0.00 0.00 0.00 4.30
476 555 8.062065 GGTGTTGAACCCATAATAAATCTTGA 57.938 34.615 0.00 0.00 44.02 3.02
492 571 6.763303 ATATTTTTGCGAAAGGTGTTGAAC 57.237 33.333 0.00 0.00 0.00 3.18
493 572 8.920665 CATAATATTTTTGCGAAAGGTGTTGAA 58.079 29.630 0.00 0.00 0.00 2.69
494 573 7.543868 CCATAATATTTTTGCGAAAGGTGTTGA 59.456 33.333 0.00 0.00 0.00 3.18
495 574 7.201513 CCCATAATATTTTTGCGAAAGGTGTTG 60.202 37.037 0.00 0.00 0.00 3.33
496 575 6.816140 CCCATAATATTTTTGCGAAAGGTGTT 59.184 34.615 0.00 1.12 0.00 3.32
497 576 6.071051 ACCCATAATATTTTTGCGAAAGGTGT 60.071 34.615 0.00 0.00 0.00 4.16
498 577 6.337356 ACCCATAATATTTTTGCGAAAGGTG 58.663 36.000 0.00 0.00 0.00 4.00
499 578 6.538945 ACCCATAATATTTTTGCGAAAGGT 57.461 33.333 0.00 0.00 0.00 3.50
500 579 7.038659 TGAACCCATAATATTTTTGCGAAAGG 58.961 34.615 0.00 0.00 0.00 3.11
501 580 8.542132 CATGAACCCATAATATTTTTGCGAAAG 58.458 33.333 0.00 0.00 0.00 2.62
502 581 7.493971 CCATGAACCCATAATATTTTTGCGAAA 59.506 33.333 0.00 0.00 0.00 3.46
503 582 6.983307 CCATGAACCCATAATATTTTTGCGAA 59.017 34.615 0.00 0.00 0.00 4.70
504 583 6.511416 CCATGAACCCATAATATTTTTGCGA 58.489 36.000 0.00 0.00 0.00 5.10
505 584 5.177327 GCCATGAACCCATAATATTTTTGCG 59.823 40.000 0.00 0.00 0.00 4.85
506 585 6.290605 AGCCATGAACCCATAATATTTTTGC 58.709 36.000 0.00 0.00 0.00 3.68
507 586 9.426837 CATAGCCATGAACCCATAATATTTTTG 57.573 33.333 0.00 0.00 33.67 2.44
508 587 8.096414 GCATAGCCATGAACCCATAATATTTTT 58.904 33.333 0.00 0.00 33.67 1.94
509 588 7.577426 CGCATAGCCATGAACCCATAATATTTT 60.577 37.037 0.00 0.00 33.67 1.82
510 589 6.127647 CGCATAGCCATGAACCCATAATATTT 60.128 38.462 0.00 0.00 33.67 1.40
511 590 5.357878 CGCATAGCCATGAACCCATAATATT 59.642 40.000 0.00 0.00 33.67 1.28
512 591 4.883585 CGCATAGCCATGAACCCATAATAT 59.116 41.667 0.00 0.00 33.67 1.28
617 696 1.669999 AAGGCTCCGGCATTTGCATC 61.670 55.000 0.00 0.00 39.55 3.91
637 716 5.825679 TGTACTGCCTACTGTGTGAAATTTT 59.174 36.000 0.00 0.00 0.00 1.82
767 856 2.422479 TGCTGATCGGTCTGTAGTACAC 59.578 50.000 2.89 0.00 0.00 2.90
773 862 1.950216 CTAGCTGCTGATCGGTCTGTA 59.050 52.381 13.43 0.00 0.00 2.74
819 908 1.170919 ACGTACACCTGTGACGCTCT 61.171 55.000 16.52 2.23 37.51 4.09
820 909 0.518636 TACGTACACCTGTGACGCTC 59.481 55.000 16.52 0.00 37.51 5.03
913 1002 0.595053 CTGTCTCAAGCGTGTCGTGT 60.595 55.000 0.00 0.00 0.00 4.49
967 1056 0.263172 TCACTCTCTCTGGATCCCCC 59.737 60.000 9.90 0.00 0.00 5.40
1282 1396 5.494724 CCCCATTGATCGATGATATGAAGT 58.505 41.667 22.50 0.00 0.00 3.01
1284 1398 4.847198 CCCCCATTGATCGATGATATGAA 58.153 43.478 22.50 0.00 0.00 2.57
1285 1399 4.492494 CCCCCATTGATCGATGATATGA 57.508 45.455 22.50 0.00 0.00 2.15
1343 1457 4.639310 AGCAAGAGATGGAATTGTTAGCTG 59.361 41.667 0.00 0.00 0.00 4.24
1532 1701 1.525077 TGGTGCTGGTGGTCGAAAC 60.525 57.895 0.00 0.00 0.00 2.78
1763 1941 3.530104 CGTCGCCGTCGTAGTTGC 61.530 66.667 0.00 0.00 36.96 4.17
1775 1953 3.173240 GAGGCTTGACGTCGTCGC 61.173 66.667 19.81 16.99 41.18 5.19
1900 2078 1.215014 TGCTGCTGTTTCGTCTCGTG 61.215 55.000 0.00 0.00 0.00 4.35
1908 2086 2.257676 GCCTGCTGCTGCTGTTTC 59.742 61.111 17.00 4.39 40.48 2.78
1929 2113 2.181205 CACTTCTCGATCGAAGACAGC 58.819 52.381 19.92 0.00 42.51 4.40
2173 2361 0.034059 ACCAACAGAGGCTTGACTCG 59.966 55.000 0.00 0.00 42.31 4.18
2186 2374 3.008157 TGGACGCTAGGAAATTACCAACA 59.992 43.478 0.00 0.00 0.00 3.33
2249 2443 2.677979 GCCCTTCGACGTTTCAGCC 61.678 63.158 0.00 0.00 0.00 4.85
2268 2463 2.145397 AATCCCTGTCGCTGTCTCTA 57.855 50.000 0.00 0.00 0.00 2.43
2294 2489 1.070758 AGATGACACAGTTCGCCACTT 59.929 47.619 0.00 0.00 30.92 3.16
2660 2904 5.002464 TCGGGCTATAACACTAACAAGTC 57.998 43.478 0.00 0.00 0.00 3.01
2661 2905 5.410355 TTCGGGCTATAACACTAACAAGT 57.590 39.130 0.00 0.00 0.00 3.16
2662 2906 6.730960 TTTTCGGGCTATAACACTAACAAG 57.269 37.500 0.00 0.00 0.00 3.16
2792 3042 1.281577 TCATGATGTAACCAGCAGCCA 59.718 47.619 0.00 0.00 40.91 4.75
2793 3043 1.945394 CTCATGATGTAACCAGCAGCC 59.055 52.381 0.00 0.00 40.91 4.85
2794 3044 2.871022 CTCTCATGATGTAACCAGCAGC 59.129 50.000 0.00 0.00 40.91 5.25
2795 3045 4.099113 TCTCTCTCATGATGTAACCAGCAG 59.901 45.833 0.00 0.00 40.91 4.24
2796 3046 4.026052 TCTCTCTCATGATGTAACCAGCA 58.974 43.478 0.00 0.00 41.99 4.41
2797 3047 4.099266 ACTCTCTCTCATGATGTAACCAGC 59.901 45.833 0.00 0.00 0.00 4.85
2798 3048 5.359292 TCACTCTCTCTCATGATGTAACCAG 59.641 44.000 0.00 0.00 0.00 4.00
2799 3049 5.264395 TCACTCTCTCTCATGATGTAACCA 58.736 41.667 0.00 0.00 0.00 3.67
2800 3050 5.221224 CCTCACTCTCTCTCATGATGTAACC 60.221 48.000 0.00 0.00 0.00 2.85
2801 3051 5.221224 CCCTCACTCTCTCTCATGATGTAAC 60.221 48.000 0.00 0.00 0.00 2.50
2802 3052 4.892345 CCCTCACTCTCTCTCATGATGTAA 59.108 45.833 0.00 0.00 0.00 2.41
2803 3053 4.468713 CCCTCACTCTCTCTCATGATGTA 58.531 47.826 0.00 0.00 0.00 2.29
2804 3054 3.298619 CCCTCACTCTCTCTCATGATGT 58.701 50.000 0.00 0.00 0.00 3.06
2805 3055 2.036217 GCCCTCACTCTCTCTCATGATG 59.964 54.545 0.00 0.00 0.00 3.07
2806 3056 2.318908 GCCCTCACTCTCTCTCATGAT 58.681 52.381 0.00 0.00 0.00 2.45
2807 3057 1.774110 GCCCTCACTCTCTCTCATGA 58.226 55.000 0.00 0.00 0.00 3.07
2808 3058 0.385029 CGCCCTCACTCTCTCTCATG 59.615 60.000 0.00 0.00 0.00 3.07
2809 3059 0.257328 TCGCCCTCACTCTCTCTCAT 59.743 55.000 0.00 0.00 0.00 2.90
2810 3060 0.678366 GTCGCCCTCACTCTCTCTCA 60.678 60.000 0.00 0.00 0.00 3.27
2811 3061 1.711060 CGTCGCCCTCACTCTCTCTC 61.711 65.000 0.00 0.00 0.00 3.20
2812 3062 1.747367 CGTCGCCCTCACTCTCTCT 60.747 63.158 0.00 0.00 0.00 3.10
2813 3063 2.766400 CCGTCGCCCTCACTCTCTC 61.766 68.421 0.00 0.00 0.00 3.20
2814 3064 2.752238 CCGTCGCCCTCACTCTCT 60.752 66.667 0.00 0.00 0.00 3.10
2815 3065 3.827898 CCCGTCGCCCTCACTCTC 61.828 72.222 0.00 0.00 0.00 3.20
2823 3073 4.832608 GATGTCACCCCGTCGCCC 62.833 72.222 0.00 0.00 0.00 6.13
2824 3074 3.385749 ATGATGTCACCCCGTCGCC 62.386 63.158 0.00 0.00 0.00 5.54
2825 3075 2.173669 CATGATGTCACCCCGTCGC 61.174 63.158 0.00 0.00 0.00 5.19
2826 3076 2.173669 GCATGATGTCACCCCGTCG 61.174 63.158 0.00 0.00 0.00 5.12
2827 3077 1.091771 CAGCATGATGTCACCCCGTC 61.092 60.000 1.88 0.00 39.69 4.79
2828 3078 1.078214 CAGCATGATGTCACCCCGT 60.078 57.895 1.88 0.00 39.69 5.28
2829 3079 1.221566 TCAGCATGATGTCACCCCG 59.778 57.895 11.32 0.00 42.56 5.73
2839 3089 1.077930 GCAGGCCTTCTCAGCATGA 60.078 57.895 0.00 0.00 44.47 3.07
2840 3090 0.752009 ATGCAGGCCTTCTCAGCATG 60.752 55.000 22.82 2.73 43.60 4.06
2841 3091 1.613610 ATGCAGGCCTTCTCAGCAT 59.386 52.632 19.08 19.08 40.77 3.79
2842 3092 1.077930 GATGCAGGCCTTCTCAGCA 60.078 57.895 16.25 16.25 39.79 4.41
2843 3093 1.823041 GGATGCAGGCCTTCTCAGC 60.823 63.158 0.00 3.10 0.00 4.26
2844 3094 1.153005 GGGATGCAGGCCTTCTCAG 60.153 63.158 0.00 0.00 0.00 3.35
2845 3095 3.001514 GGGATGCAGGCCTTCTCA 58.998 61.111 0.00 1.19 0.00 3.27
2846 3096 2.203126 CGGGATGCAGGCCTTCTC 60.203 66.667 0.00 0.00 0.00 2.87
2847 3097 2.688666 TCGGGATGCAGGCCTTCT 60.689 61.111 0.00 0.00 0.00 2.85
2848 3098 2.514824 GTCGGGATGCAGGCCTTC 60.515 66.667 0.00 0.00 0.00 3.46
2849 3099 4.473520 CGTCGGGATGCAGGCCTT 62.474 66.667 0.00 0.00 0.00 4.35
2857 3107 3.822192 TCACCTCGCGTCGGGATG 61.822 66.667 12.79 12.35 0.00 3.51
2858 3108 3.823330 GTCACCTCGCGTCGGGAT 61.823 66.667 12.79 0.00 0.00 3.85
2861 3111 4.813526 CTCGTCACCTCGCGTCGG 62.814 72.222 5.77 10.98 0.00 4.79
2862 3112 4.813526 CCTCGTCACCTCGCGTCG 62.814 72.222 5.77 0.00 0.00 5.12
2863 3113 3.735029 ACCTCGTCACCTCGCGTC 61.735 66.667 5.77 0.00 0.00 5.19
2864 3114 4.039357 CACCTCGTCACCTCGCGT 62.039 66.667 5.77 0.00 0.00 6.01
2865 3115 4.778415 CCACCTCGTCACCTCGCG 62.778 72.222 0.00 0.00 0.00 5.87
2867 3117 2.890847 GATGCCACCTCGTCACCTCG 62.891 65.000 0.00 0.00 0.00 4.63
2868 3118 1.153549 GATGCCACCTCGTCACCTC 60.154 63.158 0.00 0.00 0.00 3.85
2869 3119 2.660064 GGATGCCACCTCGTCACCT 61.660 63.158 0.00 0.00 0.00 4.00
2870 3120 2.125106 GGATGCCACCTCGTCACC 60.125 66.667 0.00 0.00 0.00 4.02
2871 3121 2.662596 TGGATGCCACCTCGTCAC 59.337 61.111 0.00 0.00 0.00 3.67
2880 3130 4.429212 CGTCGACCGTGGATGCCA 62.429 66.667 10.58 0.00 0.00 4.92
2883 3133 3.751401 ATCGCGTCGACCGTGGATG 62.751 63.158 20.62 0.00 46.86 3.51
2884 3134 3.465296 GATCGCGTCGACCGTGGAT 62.465 63.158 20.62 15.99 46.86 3.41
2885 3135 4.170062 GATCGCGTCGACCGTGGA 62.170 66.667 20.62 12.99 46.86 4.02
2888 3138 4.175489 CAGGATCGCGTCGACCGT 62.175 66.667 20.62 11.60 39.18 4.83
2891 3141 4.194720 AGGCAGGATCGCGTCGAC 62.195 66.667 5.77 5.18 39.18 4.20
2892 3142 3.889044 GAGGCAGGATCGCGTCGA 61.889 66.667 5.77 4.51 41.13 4.20
2893 3143 4.933064 GGAGGCAGGATCGCGTCG 62.933 72.222 5.77 0.00 45.47 5.12
2894 3144 4.593864 GGGAGGCAGGATCGCGTC 62.594 72.222 5.77 2.75 44.17 5.19
2897 3147 4.593864 GTCGGGAGGCAGGATCGC 62.594 72.222 0.00 0.00 0.00 4.58
2898 3148 4.271816 CGTCGGGAGGCAGGATCG 62.272 72.222 0.00 0.00 0.00 3.69
2899 3149 2.148558 GATCGTCGGGAGGCAGGATC 62.149 65.000 0.00 0.00 0.00 3.36
2900 3150 2.123251 ATCGTCGGGAGGCAGGAT 60.123 61.111 0.00 0.00 0.00 3.24
2901 3151 2.833582 GATCGTCGGGAGGCAGGA 60.834 66.667 0.00 0.00 0.00 3.86
2902 3152 3.917760 GGATCGTCGGGAGGCAGG 61.918 72.222 0.00 0.00 0.00 4.85
2903 3153 4.271816 CGGATCGTCGGGAGGCAG 62.272 72.222 0.00 0.00 0.00 4.85
2911 3161 2.487532 AACCCTAGCCGGATCGTCG 61.488 63.158 5.05 0.00 33.16 5.12
2912 3162 1.067582 CAACCCTAGCCGGATCGTC 59.932 63.158 5.05 0.00 33.16 4.20
2913 3163 2.432300 CCAACCCTAGCCGGATCGT 61.432 63.158 5.05 0.00 33.16 3.73
2914 3164 1.472662 ATCCAACCCTAGCCGGATCG 61.473 60.000 5.05 0.00 32.71 3.69
2915 3165 0.765510 AATCCAACCCTAGCCGGATC 59.234 55.000 5.05 0.00 37.27 3.36
2916 3166 1.697982 GTAATCCAACCCTAGCCGGAT 59.302 52.381 5.05 0.00 40.01 4.18
2917 3167 1.125633 GTAATCCAACCCTAGCCGGA 58.874 55.000 5.05 0.00 33.16 5.14
2918 3168 0.834612 TGTAATCCAACCCTAGCCGG 59.165 55.000 0.00 0.00 0.00 6.13
2919 3169 1.805120 CGTGTAATCCAACCCTAGCCG 60.805 57.143 0.00 0.00 0.00 5.52
2920 3170 1.949465 CGTGTAATCCAACCCTAGCC 58.051 55.000 0.00 0.00 0.00 3.93
2921 3171 1.296727 GCGTGTAATCCAACCCTAGC 58.703 55.000 0.00 0.00 0.00 3.42
2922 3172 1.567504 CGCGTGTAATCCAACCCTAG 58.432 55.000 0.00 0.00 0.00 3.02
2923 3173 0.176219 CCGCGTGTAATCCAACCCTA 59.824 55.000 4.92 0.00 0.00 3.53
2924 3174 1.078708 CCGCGTGTAATCCAACCCT 60.079 57.895 4.92 0.00 0.00 4.34
2925 3175 2.110352 CCCGCGTGTAATCCAACCC 61.110 63.158 4.92 0.00 0.00 4.11
2926 3176 1.376295 ACCCGCGTGTAATCCAACC 60.376 57.895 4.92 0.00 0.00 3.77
2927 3177 0.671163 TCACCCGCGTGTAATCCAAC 60.671 55.000 4.92 0.00 41.09 3.77
2928 3178 0.390603 CTCACCCGCGTGTAATCCAA 60.391 55.000 4.92 0.00 41.09 3.53
2929 3179 1.216977 CTCACCCGCGTGTAATCCA 59.783 57.895 4.92 0.00 41.09 3.41
2930 3180 0.108520 TTCTCACCCGCGTGTAATCC 60.109 55.000 4.92 0.00 41.09 3.01
2931 3181 1.135199 TCTTCTCACCCGCGTGTAATC 60.135 52.381 4.92 0.00 41.09 1.75
2932 3182 0.892755 TCTTCTCACCCGCGTGTAAT 59.107 50.000 4.92 0.00 41.09 1.89
2933 3183 0.675083 TTCTTCTCACCCGCGTGTAA 59.325 50.000 4.92 0.00 41.09 2.41
2934 3184 0.242825 CTTCTTCTCACCCGCGTGTA 59.757 55.000 4.92 0.00 41.09 2.90
2935 3185 1.006102 CTTCTTCTCACCCGCGTGT 60.006 57.895 4.92 0.00 41.09 4.49
2936 3186 1.738099 CCTTCTTCTCACCCGCGTG 60.738 63.158 4.92 0.00 41.72 5.34
2937 3187 1.878656 CTCCTTCTTCTCACCCGCGT 61.879 60.000 4.92 0.00 0.00 6.01
2938 3188 1.153745 CTCCTTCTTCTCACCCGCG 60.154 63.158 0.00 0.00 0.00 6.46
2939 3189 0.827368 ATCTCCTTCTTCTCACCCGC 59.173 55.000 0.00 0.00 0.00 6.13
2940 3190 1.137872 CCATCTCCTTCTTCTCACCCG 59.862 57.143 0.00 0.00 0.00 5.28
2941 3191 2.192263 ACCATCTCCTTCTTCTCACCC 58.808 52.381 0.00 0.00 0.00 4.61
2942 3192 3.677424 CGAACCATCTCCTTCTTCTCACC 60.677 52.174 0.00 0.00 0.00 4.02
2943 3193 3.056465 ACGAACCATCTCCTTCTTCTCAC 60.056 47.826 0.00 0.00 0.00 3.51
2944 3194 3.165875 ACGAACCATCTCCTTCTTCTCA 58.834 45.455 0.00 0.00 0.00 3.27
2945 3195 3.732471 CGACGAACCATCTCCTTCTTCTC 60.732 52.174 0.00 0.00 0.00 2.87
2946 3196 2.164624 CGACGAACCATCTCCTTCTTCT 59.835 50.000 0.00 0.00 0.00 2.85
2947 3197 2.094649 ACGACGAACCATCTCCTTCTTC 60.095 50.000 0.00 0.00 0.00 2.87
2948 3198 1.893801 ACGACGAACCATCTCCTTCTT 59.106 47.619 0.00 0.00 0.00 2.52
2949 3199 1.202582 CACGACGAACCATCTCCTTCT 59.797 52.381 0.00 0.00 0.00 2.85
2950 3200 1.067776 ACACGACGAACCATCTCCTTC 60.068 52.381 0.00 0.00 0.00 3.46
2951 3201 0.966920 ACACGACGAACCATCTCCTT 59.033 50.000 0.00 0.00 0.00 3.36
2952 3202 0.526662 GACACGACGAACCATCTCCT 59.473 55.000 0.00 0.00 0.00 3.69
2953 3203 0.797249 CGACACGACGAACCATCTCC 60.797 60.000 0.00 0.00 35.09 3.71
2954 3204 0.109873 ACGACACGACGAACCATCTC 60.110 55.000 0.00 0.00 37.03 2.75
2955 3205 0.313043 AACGACACGACGAACCATCT 59.687 50.000 0.00 0.00 37.03 2.90
2956 3206 0.706729 GAACGACACGACGAACCATC 59.293 55.000 0.00 0.00 37.03 3.51
2957 3207 0.031043 TGAACGACACGACGAACCAT 59.969 50.000 0.00 0.00 37.03 3.55
2958 3208 0.031043 ATGAACGACACGACGAACCA 59.969 50.000 0.00 0.00 37.03 3.67
2959 3209 0.706729 GATGAACGACACGACGAACC 59.293 55.000 0.00 0.00 37.03 3.62
2960 3210 0.357894 CGATGAACGACACGACGAAC 59.642 55.000 0.00 0.00 45.77 3.95
2961 3211 0.235404 TCGATGAACGACACGACGAA 59.765 50.000 0.00 0.00 46.45 3.85
2962 3212 1.861440 TCGATGAACGACACGACGA 59.139 52.632 0.00 0.00 46.45 4.20
2963 3213 4.427793 TCGATGAACGACACGACG 57.572 55.556 0.00 0.00 46.45 5.12
2971 3221 2.505498 CGCCGTCCTTCGATGAACG 61.505 63.158 3.00 3.00 42.86 3.95
2972 3222 2.165301 CCGCCGTCCTTCGATGAAC 61.165 63.158 0.00 0.00 42.86 3.18
2973 3223 2.183300 CCGCCGTCCTTCGATGAA 59.817 61.111 0.00 0.00 42.86 2.57
2974 3224 4.508128 GCCGCCGTCCTTCGATGA 62.508 66.667 0.00 0.00 42.86 2.92
2975 3225 4.514577 AGCCGCCGTCCTTCGATG 62.515 66.667 0.00 0.00 42.86 3.84
2976 3226 4.514577 CAGCCGCCGTCCTTCGAT 62.515 66.667 0.00 0.00 42.86 3.59
2991 3241 2.203167 ATGGCCTGATCGCAGCAG 60.203 61.111 3.32 0.00 40.91 4.24
2992 3242 2.515290 CATGGCCTGATCGCAGCA 60.515 61.111 3.32 0.00 40.91 4.41
2993 3243 3.285215 CCATGGCCTGATCGCAGC 61.285 66.667 3.32 0.00 40.91 5.25
2994 3244 1.153107 TTCCATGGCCTGATCGCAG 60.153 57.895 6.96 0.00 41.93 5.18
2995 3245 1.153107 CTTCCATGGCCTGATCGCA 60.153 57.895 6.96 0.00 0.00 5.10
2996 3246 1.895707 CCTTCCATGGCCTGATCGC 60.896 63.158 6.96 0.00 0.00 4.58
2997 3247 1.228063 CCCTTCCATGGCCTGATCG 60.228 63.158 6.96 0.00 0.00 3.69
2998 3248 1.530183 GCCCTTCCATGGCCTGATC 60.530 63.158 6.96 0.00 43.33 2.92
2999 3249 2.605299 GCCCTTCCATGGCCTGAT 59.395 61.111 6.96 0.00 43.33 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.