AutoCloner

Multiple sequence alignment - TraesCS4D01G123200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G123200	chr4D	100.000	3854	0	0	1	3854	107689759	107693612	0.000000e+00	7118
1	TraesCS4D01G123200	chr4D	91.549	639	20	7	1	606	3363672	3363035	0.000000e+00	850
2	TraesCS4D01G123200	chr4B	96.562	3054	86	12	807	3854	168996834	168993794	0.000000e+00	5040
3	TraesCS4D01G123200	chr4B	90.819	403	20	11	1	401	567194218	567193831	1.230000e-144	523
4	TraesCS4D01G123200	chr4B	94.558	294	13	2	309	600	567193839	567193547	5.870000e-123	451
5	TraesCS4D01G123200	chr4B	89.352	216	18	5	606	818	169017282	169017069	2.280000e-67	267
6	TraesCS4D01G123200	chr4A	94.141	2731	101	28	609	3323	468629352	468626665	0.000000e+00	4102
7	TraesCS4D01G123200	chr4A	93.483	445	19	8	3412	3854	468623871	468623435	0.000000e+00	652
8	TraesCS4D01G123200	chr5D	86.130	1961	210	30	990	2942	238546546	238548452	0.000000e+00	2058
9	TraesCS4D01G123200	chr5D	94.637	578	13	7	1	574	548677671	548678234	0.000000e+00	880
10	TraesCS4D01G123200	chr5A	86.759	1873	194	24	999	2865	316096352	316094528	0.000000e+00	2036
11	TraesCS4D01G123200	chr5B	86.209	1907	207	25	999	2897	266519143	266517285	0.000000e+00	2013
12	TraesCS4D01G123200	chr3B	89.873	632	31	7	1	600	521689791	521690421	0.000000e+00	782
13	TraesCS4D01G123200	chr3B	87.676	641	30	13	1	593	625900232	625899593	0.000000e+00	701
14	TraesCS4D01G123200	chr3B	89.294	411	29	10	1	401	755706942	755706537	5.750000e-138	501
15	TraesCS4D01G123200	chr3B	91.030	301	17	3	312	603	755706542	755706243	7.760000e-107	398
16	TraesCS4D01G123200	chr6B	87.423	652	30	20	1	601	46267572	46268222	0.000000e+00	702
17	TraesCS4D01G123200	chr6B	84.545	550	83	2	2265	2813	642929630	642930178	9.420000e-151	544
18	TraesCS4D01G123200	chr3D	85.399	589	84	2	2230	2817	456924811	456925398	9.150000e-171	610
19	TraesCS4D01G123200	chr3D	83.547	468	46	18	136	601	435693446	435693008	3.580000e-110	409
20	TraesCS4D01G123200	chr2A	88.675	415	30	9	1	402	761905416	761905006	1.240000e-134	490
21	TraesCS4D01G123200	chr2A	93.750	160	6	3	444	600	761904697	761904539	1.790000e-58	237
22	TraesCS4D01G123200	chr3A	85.507	276	26	11	136	399	569621015	569620742	3.790000e-70	276

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G123200	chr4D	107689759	107693612	3853	False	7118.0	7118	100.0000	1	3854	1	chr4D.!!$F1	3853
1	TraesCS4D01G123200	chr4D	3363035	3363672	637	True	850.0	850	91.5490	1	606	1	chr4D.!!$R1	605
2	TraesCS4D01G123200	chr4B	168993794	168996834	3040	True	5040.0	5040	96.5620	807	3854	1	chr4B.!!$R1	3047
3	TraesCS4D01G123200	chr4B	567193547	567194218	671	True	487.0	523	92.6885	1	600	2	chr4B.!!$R3	599
4	TraesCS4D01G123200	chr4A	468623435	468629352	5917	True	2377.0	4102	93.8120	609	3854	2	chr4A.!!$R1	3245
5	TraesCS4D01G123200	chr5D	238546546	238548452	1906	False	2058.0	2058	86.1300	990	2942	1	chr5D.!!$F1	1952
6	TraesCS4D01G123200	chr5D	548677671	548678234	563	False	880.0	880	94.6370	1	574	1	chr5D.!!$F2	573
7	TraesCS4D01G123200	chr5A	316094528	316096352	1824	True	2036.0	2036	86.7590	999	2865	1	chr5A.!!$R1	1866
8	TraesCS4D01G123200	chr5B	266517285	266519143	1858	True	2013.0	2013	86.2090	999	2897	1	chr5B.!!$R1	1898
9	TraesCS4D01G123200	chr3B	521689791	521690421	630	False	782.0	782	89.8730	1	600	1	chr3B.!!$F1	599
10	TraesCS4D01G123200	chr3B	625899593	625900232	639	True	701.0	701	87.6760	1	593	1	chr3B.!!$R1	592
11	TraesCS4D01G123200	chr3B	755706243	755706942	699	True	449.5	501	90.1620	1	603	2	chr3B.!!$R2	602
12	TraesCS4D01G123200	chr6B	46267572	46268222	650	False	702.0	702	87.4230	1	601	1	chr6B.!!$F1	600
13	TraesCS4D01G123200	chr6B	642929630	642930178	548	False	544.0	544	84.5450	2265	2813	1	chr6B.!!$F2	548
14	TraesCS4D01G123200	chr3D	456924811	456925398	587	False	610.0	610	85.3990	2230	2817	1	chr3D.!!$F1	587
15	TraesCS4D01G123200	chr2A	761904539	761905416	877	True	363.5	490	91.2125	1	600	2	chr2A.!!$R1	599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
212	216	1.412343	TGGTGGAAAAAGCTTCAAGCC	59.588	47.619	5.53	43.77	4.35	F
1239	1608	1.316706	AACTCCTCGCCTCCTTCTCG	61.317	60.000	0.00	0.00	4.04	F
2328	2700	1.215647	GAGTGCCGAGTCCAACGAT	59.784	57.895	0.00	0.00	3.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2003	2375	1.276421	AGACCATGGAGTCGAACAAGG	59.724	52.381	21.47	5.93	41.83	3.61	R
2466	2838	0.036732	TGAAGCCGCTCTTGGTGATT	59.963	50.000	0.00	0.00	34.56	2.57	R
3332	3764	3.056393	AGACAACCAAATGCATCCACATG	60.056	43.478	0.00	0.00	0.00	3.21	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
117	118	6.315393	AGAAATGCTACAACCGGTGTATAAAG	59.685	38.462	8.52	4.21	41.93	1.85
212	216	1.412343	TGGTGGAAAAAGCTTCAAGCC	59.588	47.619	5.53	0.00	43.77	4.35
280	284	5.596836	AATGACAAGAAAAGCTTCAACCA	57.403	34.783	0.00	0.00	33.60	3.67
611	965	8.489990	CAGATCACTGCCCTAATTATTAGATG	57.510	38.462	13.07	5.55	37.33	2.90
612	966	7.065563	CAGATCACTGCCCTAATTATTAGATGC	59.934	40.741	13.07	14.17	37.33	3.91
613	967	6.186420	TCACTGCCCTAATTATTAGATGCA	57.814	37.500	19.90	19.90	37.99	3.96
616	970	7.391554	TCACTGCCCTAATTATTAGATGCAATC	59.608	37.037	20.79	0.00	46.04	2.67
642	996	6.710744	TGATGATCAGAAATGATGGATGACAG	59.289	38.462	0.09	0.00	0.00	3.51
646	1000	5.997843	TCAGAAATGATGGATGACAGACAT	58.002	37.500	0.00	0.00	42.47	3.06
647	1001	7.128234	TCAGAAATGATGGATGACAGACATA	57.872	36.000	0.00	0.00	39.56	2.29
648	1002	6.988580	TCAGAAATGATGGATGACAGACATAC	59.011	38.462	0.00	0.00	39.56	2.39
649	1003	6.990939	CAGAAATGATGGATGACAGACATACT	59.009	38.462	0.00	0.00	40.32	2.12
655	1009	7.609056	TGATGGATGACAGACATACTATCATG	58.391	38.462	0.00	0.00	42.02	3.07
661	1015	7.059202	TGACAGACATACTATCATGAGCAAT	57.941	36.000	0.09	0.00	26.01	3.56
663	1017	8.641541	TGACAGACATACTATCATGAGCAATTA	58.358	33.333	0.09	0.00	26.01	1.40
667	1021	9.486497	AGACATACTATCATGAGCAATTAAGTG	57.514	33.333	0.09	0.00	0.00	3.16
782	1147	9.967346	AAAGTATTCTTCTTTAGAAAAACAGGC	57.033	29.630	0.00	0.00	45.62	4.85
783	1148	8.112016	AGTATTCTTCTTTAGAAAAACAGGCC	57.888	34.615	0.00	0.00	45.62	5.19
784	1149	6.976934	ATTCTTCTTTAGAAAAACAGGCCA	57.023	33.333	5.01	0.00	45.62	5.36
785	1150	6.976934	TTCTTCTTTAGAAAAACAGGCCAT	57.023	33.333	5.01	0.00	39.90	4.40
786	1151	8.650143	ATTCTTCTTTAGAAAAACAGGCCATA	57.350	30.769	5.01	0.00	45.62	2.74
787	1152	7.687941	TCTTCTTTAGAAAAACAGGCCATAG	57.312	36.000	5.01	0.00	33.07	2.23
788	1153	7.231467	TCTTCTTTAGAAAAACAGGCCATAGT	58.769	34.615	5.01	0.00	33.07	2.12
789	1154	6.817765	TCTTTAGAAAAACAGGCCATAGTG	57.182	37.500	5.01	0.00	0.00	2.74
790	1155	6.303839	TCTTTAGAAAAACAGGCCATAGTGT	58.696	36.000	5.01	0.00	0.00	3.55
791	1156	7.455058	TCTTTAGAAAAACAGGCCATAGTGTA	58.545	34.615	5.01	0.00	0.00	2.90
792	1157	7.940137	TCTTTAGAAAAACAGGCCATAGTGTAA	59.060	33.333	5.01	0.00	0.00	2.41
793	1158	8.466617	TTTAGAAAAACAGGCCATAGTGTAAA	57.533	30.769	5.01	0.00	0.00	2.01
794	1159	6.969993	AGAAAAACAGGCCATAGTGTAAAA	57.030	33.333	5.01	0.00	0.00	1.52
795	1160	6.981722	AGAAAAACAGGCCATAGTGTAAAAG	58.018	36.000	5.01	0.00	0.00	2.27
876	1241	3.917985	CGAAAGCCGAAAATTTCCGAATT	59.082	39.130	0.00	0.00	41.76	2.17
1182	1551	4.736896	GCCGACTCCGTCCGCTTT	62.737	66.667	1.10	0.00	34.84	3.51
1239	1608	1.316706	AACTCCTCGCCTCCTTCTCG	61.317	60.000	0.00	0.00	0.00	4.04
1561	1933	1.422024	CCGAGGAGGAGGAGTCAGATA	59.578	57.143	0.00	0.00	45.00	1.98
1742	2114	1.537814	ATGTACGACCTCGCCCACAA	61.538	55.000	0.00	0.00	44.43	3.33
1914	2286	4.736896	GTCGGCTCCGTGGTCACC	62.737	72.222	8.28	0.00	40.74	4.02
2306	2678	2.313234	CGTCACAGCTTTGCTTGAATG	58.687	47.619	0.00	0.00	36.40	2.67
2328	2700	1.215647	GAGTGCCGAGTCCAACGAT	59.784	57.895	0.00	0.00	0.00	3.73
2618	2990	2.671963	GGAACGGGGTGCAAGGAC	60.672	66.667	0.00	0.00	0.00	3.85
2747	3119	1.718757	GCATTTAGGTCAGCGGCAGG	61.719	60.000	1.45	0.00	0.00	4.85
2890	3264	7.327275	CGCTGTCTATGCTAGTTATCCTTTTAG	59.673	40.741	0.00	0.00	0.00	1.85
2972	3347	3.462982	TGGCGGTACATGACATGTATTC	58.537	45.455	26.73	20.58	46.39	1.75
3031	3406	1.197949	GCAGCGAGAAAGGAGGTTTTC	59.802	52.381	0.00	0.00	37.34	2.29
3046	3421	2.696187	GGTTTTCCCACTGTTTAGCCAA	59.304	45.455	0.00	0.00	0.00	4.52
3098	3473	3.286353	TCAGATGCAAACCTTGTCACAA	58.714	40.909	0.00	0.00	0.00	3.33
3145	3520	4.803098	ACTGTTGACCTGATAGTGTACC	57.197	45.455	0.00	0.00	0.00	3.34
3167	3542	4.637534	CCTTGTATCTGTGCTTGCATAAGT	59.362	41.667	0.00	0.00	36.27	2.24
3374	6482	8.417106	GTTGTCTCTTGATCAGGATAGATGTTA	58.583	37.037	8.12	0.00	0.00	2.41
3405	6513	9.920946	ATGTATAATACTTCTGGTGGTTGATTT	57.079	29.630	0.00	0.00	0.00	2.17
3406	6514	9.747898	TGTATAATACTTCTGGTGGTTGATTTT	57.252	29.630	0.00	0.00	0.00	1.82
3479	6587	3.409636	ACCCAATCCTCCTCTCCCATATA	59.590	47.826	0.00	0.00	0.00	0.86
3514	6622	4.282950	ACAATGCAAAGACGATGCTATG	57.717	40.909	0.00	7.80	44.14	2.23
3732	6840	4.771903	TGCGCTAACCAAGTTCCATAATA	58.228	39.130	9.73	0.00	0.00	0.98
3761	6869	9.120538	GAAATCTTGGCACCTTAATCAACTATA	57.879	33.333	0.00	0.00	0.00	1.31
3762	6870	9.646522	AAATCTTGGCACCTTAATCAACTATAT	57.353	29.630	0.00	0.00	0.00	0.86
3795	6903	4.214993	AGGCCCATAAGGAGTACAGTAT	57.785	45.455	0.00	0.00	38.24	2.12
3799	6907	6.618196	AGGCCCATAAGGAGTACAGTATAAAA	59.382	38.462	0.00	0.00	38.24	1.52
3844	6952	8.485392	TGTTATCTGTGTGGATCATCTCAATTA	58.515	33.333	0.00	0.00	0.00	1.40
3846	6954	9.716531	TTATCTGTGTGGATCATCTCAATTATC	57.283	33.333	0.00	0.00	0.00	1.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	1.208358	CGTTCGTAGCGGACAGTCA	59.792	57.895	2.17	0.00	34.65	3.41
71	72	1.555075	CTACCCTGGTTGCAGCTTCTA	59.445	52.381	0.00	0.00	0.00	2.10
212	216	1.758783	GTTGAAGCTTTTCCACTGCG	58.241	50.000	0.00	0.00	0.00	5.18
616	970	6.710744	TGTCATCCATCATTTCTGATCATCAG	59.289	38.462	8.54	8.54	45.59	2.90
621	975	6.053650	TGTCTGTCATCCATCATTTCTGATC	58.946	40.000	0.00	0.00	40.20	2.92
626	980	9.149225	GATAGTATGTCTGTCATCCATCATTTC	57.851	37.037	0.00	0.00	37.91	2.17
631	985	7.834803	TCATGATAGTATGTCTGTCATCCATC	58.165	38.462	0.00	0.00	46.91	3.51
633	987	6.294955	GCTCATGATAGTATGTCTGTCATCCA	60.295	42.308	0.00	0.00	46.91	3.41
634	988	6.098679	GCTCATGATAGTATGTCTGTCATCC	58.901	44.000	0.00	0.00	46.91	3.51
642	996	9.265901	ACACTTAATTGCTCATGATAGTATGTC	57.734	33.333	0.00	0.00	0.00	3.06
698	1055	9.519905	CACACACAAACGTTTATACATAAGTAC	57.480	33.333	14.20	0.00	31.96	2.73
701	1058	8.996988	AACACACACAAACGTTTATACATAAG	57.003	30.769	14.20	1.05	0.00	1.73
712	1069	5.359716	TGTTTTCTAACACACACAAACGT	57.640	34.783	0.00	0.00	39.29	3.99
757	1122	8.577296	GGCCTGTTTTTCTAAAGAAGAATACTT	58.423	33.333	0.00	0.00	43.75	2.24
759	1124	7.882179	TGGCCTGTTTTTCTAAAGAAGAATAC	58.118	34.615	3.32	0.00	43.75	1.89
761	1126	6.976934	TGGCCTGTTTTTCTAAAGAAGAAT	57.023	33.333	3.32	0.00	43.75	2.40
762	1127	6.976934	ATGGCCTGTTTTTCTAAAGAAGAA	57.023	33.333	3.32	0.00	42.62	2.52
764	1129	7.040409	ACACTATGGCCTGTTTTTCTAAAGAAG	60.040	37.037	3.32	0.00	35.21	2.85
765	1130	6.775629	ACACTATGGCCTGTTTTTCTAAAGAA	59.224	34.615	3.32	0.00	0.00	2.52
768	1133	8.466617	TTTACACTATGGCCTGTTTTTCTAAA	57.533	30.769	3.32	0.00	0.00	1.85
770	1135	7.308951	GCTTTTACACTATGGCCTGTTTTTCTA	60.309	37.037	3.32	0.00	0.00	2.10
771	1136	6.516693	GCTTTTACACTATGGCCTGTTTTTCT	60.517	38.462	3.32	0.00	0.00	2.52
773	1138	5.538118	GCTTTTACACTATGGCCTGTTTTT	58.462	37.500	3.32	0.00	0.00	1.94
774	1139	4.320935	CGCTTTTACACTATGGCCTGTTTT	60.321	41.667	3.32	0.00	0.00	2.43
775	1140	3.190535	CGCTTTTACACTATGGCCTGTTT	59.809	43.478	3.32	0.00	0.00	2.83
776	1141	2.747446	CGCTTTTACACTATGGCCTGTT	59.253	45.455	3.32	0.00	0.00	3.16
777	1142	2.027561	TCGCTTTTACACTATGGCCTGT	60.028	45.455	3.32	1.71	0.00	4.00
778	1143	2.609459	CTCGCTTTTACACTATGGCCTG	59.391	50.000	3.32	0.00	0.00	4.85
779	1144	2.906354	CTCGCTTTTACACTATGGCCT	58.094	47.619	3.32	0.00	0.00	5.19
781	1146	1.330829	GGCTCGCTTTTACACTATGGC	59.669	52.381	0.00	0.00	0.00	4.40
782	1147	1.940613	GGGCTCGCTTTTACACTATGG	59.059	52.381	0.00	0.00	0.00	2.74
783	1148	2.351726	GTGGGCTCGCTTTTACACTATG	59.648	50.000	0.00	0.00	0.00	2.23
784	1149	2.027561	TGTGGGCTCGCTTTTACACTAT	60.028	45.455	0.00	0.00	0.00	2.12
785	1150	1.345089	TGTGGGCTCGCTTTTACACTA	59.655	47.619	0.00	0.00	0.00	2.74
786	1151	0.107831	TGTGGGCTCGCTTTTACACT	59.892	50.000	0.00	0.00	0.00	3.55
787	1152	1.165270	ATGTGGGCTCGCTTTTACAC	58.835	50.000	0.00	0.00	0.00	2.90
788	1153	1.904287	AATGTGGGCTCGCTTTTACA	58.096	45.000	0.00	0.00	0.00	2.41
789	1154	3.242518	GAAAATGTGGGCTCGCTTTTAC	58.757	45.455	11.03	1.77	32.70	2.01
790	1155	2.095466	CGAAAATGTGGGCTCGCTTTTA	60.095	45.455	11.03	0.00	32.70	1.52
791	1156	1.335872	CGAAAATGTGGGCTCGCTTTT	60.336	47.619	5.24	5.24	33.87	2.27
792	1157	0.240945	CGAAAATGTGGGCTCGCTTT	59.759	50.000	0.00	0.00	0.00	3.51
793	1158	0.605319	TCGAAAATGTGGGCTCGCTT	60.605	50.000	0.00	0.00	0.00	4.68
794	1159	0.605319	TTCGAAAATGTGGGCTCGCT	60.605	50.000	0.00	0.00	0.00	4.93
795	1160	0.451783	ATTCGAAAATGTGGGCTCGC	59.548	50.000	0.00	0.00	0.00	5.03
895	1261	2.029221	GGAAGGGATAGCGGCGAC	59.971	66.667	12.98	1.23	0.00	5.19
1182	1551	3.443045	GCGACGGGGTAGACGGAA	61.443	66.667	0.00	0.00	35.23	4.30
1248	1617	3.311110	GACAGGGGTGAGGACGCA	61.311	66.667	0.00	0.00	36.75	5.24
1472	1841	4.796231	CGTCGGCAAGGGAGGACG	62.796	72.222	0.00	0.00	44.92	4.79
1590	1962	2.122167	CCGTCTCTTCCTCCTCCCG	61.122	68.421	0.00	0.00	0.00	5.14
1914	2286	2.660064	CCTGGTCCCGTCCTTGAGG	61.660	68.421	0.00	0.00	0.00	3.86
2003	2375	1.276421	AGACCATGGAGTCGAACAAGG	59.724	52.381	21.47	5.93	41.83	3.61
2306	2678	1.641577	GTTGGACTCGGCACTCATAC	58.358	55.000	0.00	0.00	0.00	2.39
2328	2700	1.873903	GCAGCAGAACACTCCTTCGAA	60.874	52.381	0.00	0.00	0.00	3.71
2466	2838	0.036732	TGAAGCCGCTCTTGGTGATT	59.963	50.000	0.00	0.00	34.56	2.57
2747	3119	0.394565	ATAGTCTGCGCCAATCTCCC	59.605	55.000	4.18	0.00	0.00	4.30
2948	3323	0.177836	CATGTCATGTACCGCCAGGA	59.822	55.000	4.53	0.00	41.02	3.86
2972	3347	5.428184	AAAGTTCAGGTGGATAAGGAGAG	57.572	43.478	0.00	0.00	0.00	3.20
3031	3406	4.806640	ATTGAATTGGCTAAACAGTGGG	57.193	40.909	0.00	0.00	0.00	4.61
3098	3473	6.968248	ACCATATACCTTGTCCATCTCCATAT	59.032	38.462	0.00	0.00	0.00	1.78
3145	3520	5.808042	ACTTATGCAAGCACAGATACAAG	57.192	39.130	9.42	2.93	34.94	3.16
3167	3542	7.491372	CACTTTTCTATAATCAGAAGGCACGTA	59.509	37.037	0.00	0.00	35.99	3.57
3332	3764	3.056393	AGACAACCAAATGCATCCACATG	60.056	43.478	0.00	0.00	0.00	3.21
3479	6587	9.899226	GTCTTTGCATTGTAAGAACTAAGAAAT	57.101	29.630	0.18	0.00	32.59	2.17
3500	6608	5.957842	TTGTTTTCCATAGCATCGTCTTT	57.042	34.783	0.00	0.00	0.00	2.52
3514	6622	3.457234	CAACAGAAGGGCTTTGTTTTCC	58.543	45.455	0.00	0.00	33.06	3.13
3580	6688	4.823442	ACATTTGAGTGAGAGCATTCAACA	59.177	37.500	3.75	0.00	46.28	3.33
3732	6840	5.271598	TGATTAAGGTGCCAAGATTTCCAT	58.728	37.500	0.00	0.00	0.00	3.41
3761	6869	7.534852	TCCTTATGGGCCTATGAATTTGTAAT	58.465	34.615	12.67	0.00	34.39	1.89
3762	6870	6.916909	TCCTTATGGGCCTATGAATTTGTAA	58.083	36.000	12.67	0.00	34.39	2.41
3802	6910	8.615211	CACAGATAACAAACACTGCATGTATAT	58.385	33.333	0.00	0.00	42.31	0.86
3803	6911	7.606073	ACACAGATAACAAACACTGCATGTATA	59.394	33.333	0.00	0.00	42.31	1.47

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.