Multiple sequence alignment - TraesCS4D01G121800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G121800 chr4D 100.000 5830 0 0 1 5830 103256747 103250918 0.000000e+00 10767.0
1 TraesCS4D01G121800 chr4A 95.473 3159 91 23 393 3510 471917207 471920354 0.000000e+00 4994.0
2 TraesCS4D01G121800 chr4A 97.868 1501 30 2 3544 5043 471920586 471922085 0.000000e+00 2593.0
3 TraesCS4D01G121800 chr4A 92.857 812 41 7 5034 5830 471923316 471924125 0.000000e+00 1162.0
4 TraesCS4D01G121800 chr4A 98.000 50 1 0 3057 3106 471919927 471919976 2.890000e-13 87.9
5 TraesCS4D01G121800 chr4A 94.737 38 0 1 3510 3547 471920412 471920447 2.270000e-04 58.4
6 TraesCS4D01G121800 chr4B 95.907 2712 60 12 393 3060 147383784 147381080 0.000000e+00 4346.0
7 TraesCS4D01G121800 chr4B 94.112 2157 64 22 3510 5650 147380553 147378444 0.000000e+00 3221.0
8 TraesCS4D01G121800 chr4B 85.529 463 34 22 3057 3510 147381049 147380611 2.480000e-123 453.0
9 TraesCS4D01G121800 chr4B 96.875 96 3 0 5735 5830 147376433 147376338 1.680000e-35 161.0
10 TraesCS4D01G121800 chr4B 97.590 83 2 0 3358 3440 147380813 147380731 6.090000e-30 143.0
11 TraesCS4D01G121800 chr6D 93.401 394 26 0 1 394 123059708 123059315 8.420000e-163 584.0
12 TraesCS4D01G121800 chr6D 90.585 393 36 1 1 393 119108752 119109143 2.410000e-143 520.0
13 TraesCS4D01G121800 chr1A 91.624 394 33 0 1 394 220715072 220714679 3.970000e-151 545.0
14 TraesCS4D01G121800 chr3B 91.371 394 34 0 1 394 694266596 694266989 1.850000e-149 540.0
15 TraesCS4D01G121800 chr3B 90.863 394 36 0 1 394 776543536 776543929 4.000000e-146 529.0
16 TraesCS4D01G121800 chr1D 91.071 392 35 0 1 392 50914912 50915303 1.110000e-146 531.0
17 TraesCS4D01G121800 chr6A 90.840 393 36 0 1 393 507662664 507662272 1.440000e-145 527.0
18 TraesCS4D01G121800 chr6B 89.567 393 41 0 1 393 348825860 348825468 3.140000e-137 499.0
19 TraesCS4D01G121800 chr3A 89.340 394 42 0 1 394 632073381 632072988 4.060000e-136 496.0
20 TraesCS4D01G121800 chr5A 85.563 471 61 7 1908 2374 320561079 320561546 2.440000e-133 486.0
21 TraesCS4D01G121800 chr5A 83.911 404 53 4 3816 4207 320562860 320563263 5.520000e-100 375.0
22 TraesCS4D01G121800 chr5A 83.984 256 26 6 2736 2991 320562012 320562252 1.260000e-56 231.0
23 TraesCS4D01G121800 chr5A 92.000 75 5 1 984 1057 320559815 320559889 2.870000e-18 104.0
24 TraesCS4D01G121800 chr5D 85.106 470 64 6 1908 2374 233971401 233970935 5.290000e-130 475.0
25 TraesCS4D01G121800 chr5D 83.610 421 55 8 3816 4222 233969617 233969197 3.300000e-102 383.0
26 TraesCS4D01G121800 chr5D 88.021 192 21 2 2803 2994 233970410 233970221 5.880000e-55 226.0
27 TraesCS4D01G121800 chr5D 93.333 75 4 1 984 1057 233972678 233972604 6.180000e-20 110.0
28 TraesCS4D01G121800 chr5B 85.874 446 59 4 1908 2351 270861945 270862388 6.840000e-129 472.0
29 TraesCS4D01G121800 chr5B 82.660 421 59 8 3816 4222 270863717 270864137 1.540000e-95 361.0
30 TraesCS4D01G121800 chr5B 83.984 256 26 7 2736 2991 270862875 270863115 1.260000e-56 231.0
31 TraesCS4D01G121800 chr5B 90.805 87 5 3 973 1057 270860682 270860767 4.770000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G121800 chr4D 103250918 103256747 5829 True 10767.00 10767 100.00000 1 5830 1 chr4D.!!$R1 5829
1 TraesCS4D01G121800 chr4A 471917207 471924125 6918 False 1779.06 4994 95.78700 393 5830 5 chr4A.!!$F1 5437
2 TraesCS4D01G121800 chr4B 147376338 147383784 7446 True 1664.80 4346 94.00260 393 5830 5 chr4B.!!$R1 5437
3 TraesCS4D01G121800 chr5A 320559815 320563263 3448 False 299.00 486 86.36450 984 4207 4 chr5A.!!$F1 3223
4 TraesCS4D01G121800 chr5D 233969197 233972678 3481 True 298.50 475 87.51750 984 4222 4 chr5D.!!$R1 3238
5 TraesCS4D01G121800 chr5B 270860682 270864137 3455 False 294.25 472 85.83075 973 4222 4 chr5B.!!$F1 3249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.035056 GCCTTCCTGTGTACATGGCT 60.035 55.000 0.00 0.00 36.32 4.75 F
384 385 0.379669 ACGCACCCTCTACGTATTCG 59.620 55.000 0.00 0.00 38.45 3.34 F
444 445 0.907486 CATCCTCTTCCCAGCTGACA 59.093 55.000 17.39 0.00 0.00 3.58 F
1757 1982 1.173043 TTCGGTTTATTGCCTGCAGG 58.827 50.000 29.34 29.34 38.53 4.85 F
1814 2039 2.351706 ACCCCTTGCTCGTGTAAAAA 57.648 45.000 0.00 0.00 0.00 1.94 F
2324 2948 4.457603 GTGTTTATTGTGTGCAGGGACATA 59.542 41.667 0.00 0.00 0.00 2.29 F
3607 4780 3.686227 TCATCATATTTTGCCCCACCT 57.314 42.857 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1982 1.208052 TGGACCAGATCTACTGCAAGC 59.792 52.381 0.00 0.00 44.52 4.01 R
2014 2638 2.036992 TCAATTTTGCCAGGCGTTGAAT 59.963 40.909 7.03 1.32 0.00 2.57 R
2660 3427 6.471146 AGCAGAGTTAAGTCTCATTGATTGT 58.529 36.000 9.98 0.00 36.97 2.71 R
3513 4488 1.239347 GGAACCAGAAAGACTGTGCC 58.761 55.000 0.00 0.00 44.40 5.01 R
3607 4780 4.439305 GCAGAAGGAATGCATAACAACA 57.561 40.909 0.00 0.00 43.31 3.33 R
4075 5265 0.595095 CAAAGTCAGACAGCTTGGCC 59.405 55.000 2.66 0.00 0.00 5.36 R
5599 8055 0.250124 AATCCTCGTTGTCGCCACAA 60.250 50.000 0.00 0.00 40.40 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.263356 CTTTACCTGGTGGGAGACGA 58.737 55.000 10.23 0.00 38.76 4.20
20 21 0.971386 TTTACCTGGTGGGAGACGAC 59.029 55.000 10.23 0.00 38.76 4.34
26 27 2.741092 GTGGGAGACGACCTGCAA 59.259 61.111 0.00 0.00 34.56 4.08
27 28 1.668151 GTGGGAGACGACCTGCAAC 60.668 63.158 0.00 0.00 34.56 4.17
28 29 2.047179 GGGAGACGACCTGCAACC 60.047 66.667 0.00 0.00 34.56 3.77
29 30 2.432628 GGAGACGACCTGCAACCG 60.433 66.667 0.00 0.00 32.93 4.44
30 31 2.338984 GAGACGACCTGCAACCGT 59.661 61.111 7.30 7.30 39.41 4.83
31 32 2.022129 GAGACGACCTGCAACCGTG 61.022 63.158 11.57 0.00 36.60 4.94
32 33 2.279918 GACGACCTGCAACCGTGT 60.280 61.111 11.57 0.00 36.60 4.49
33 34 1.007038 GACGACCTGCAACCGTGTA 60.007 57.895 11.57 0.00 36.60 2.90
34 35 1.280206 GACGACCTGCAACCGTGTAC 61.280 60.000 11.57 0.00 36.60 2.90
35 36 2.025418 CGACCTGCAACCGTGTACC 61.025 63.158 0.00 0.00 0.00 3.34
36 37 1.070105 GACCTGCAACCGTGTACCA 59.930 57.895 0.00 0.00 0.00 3.25
37 38 0.321298 GACCTGCAACCGTGTACCAT 60.321 55.000 0.00 0.00 0.00 3.55
38 39 0.321298 ACCTGCAACCGTGTACCATC 60.321 55.000 0.00 0.00 0.00 3.51
39 40 1.024579 CCTGCAACCGTGTACCATCC 61.025 60.000 0.00 0.00 0.00 3.51
40 41 1.003112 TGCAACCGTGTACCATCCC 60.003 57.895 0.00 0.00 0.00 3.85
41 42 1.747745 GCAACCGTGTACCATCCCC 60.748 63.158 0.00 0.00 0.00 4.81
42 43 1.988015 CAACCGTGTACCATCCCCT 59.012 57.895 0.00 0.00 0.00 4.79
43 44 1.196911 CAACCGTGTACCATCCCCTA 58.803 55.000 0.00 0.00 0.00 3.53
44 45 1.134610 CAACCGTGTACCATCCCCTAC 60.135 57.143 0.00 0.00 0.00 3.18
45 46 1.039233 ACCGTGTACCATCCCCTACG 61.039 60.000 0.00 0.00 0.00 3.51
46 47 1.066918 CGTGTACCATCCCCTACGC 59.933 63.158 0.00 0.00 0.00 4.42
47 48 1.066918 GTGTACCATCCCCTACGCG 59.933 63.158 3.53 3.53 0.00 6.01
48 49 1.076850 TGTACCATCCCCTACGCGA 60.077 57.895 15.93 0.00 0.00 5.87
49 50 0.683828 TGTACCATCCCCTACGCGAA 60.684 55.000 15.93 0.00 0.00 4.70
50 51 0.461135 GTACCATCCCCTACGCGAAA 59.539 55.000 15.93 0.00 0.00 3.46
51 52 1.134729 GTACCATCCCCTACGCGAAAA 60.135 52.381 15.93 0.00 0.00 2.29
52 53 0.107848 ACCATCCCCTACGCGAAAAG 60.108 55.000 15.93 7.04 0.00 2.27
53 54 0.814010 CCATCCCCTACGCGAAAAGG 60.814 60.000 15.93 16.30 0.00 3.11
54 55 0.107848 CATCCCCTACGCGAAAAGGT 60.108 55.000 15.93 0.00 0.00 3.50
55 56 0.616891 ATCCCCTACGCGAAAAGGTT 59.383 50.000 15.93 0.04 0.00 3.50
56 57 0.397564 TCCCCTACGCGAAAAGGTTT 59.602 50.000 15.93 0.00 0.00 3.27
57 58 0.519961 CCCCTACGCGAAAAGGTTTG 59.480 55.000 15.93 4.07 0.00 2.93
58 59 0.519961 CCCTACGCGAAAAGGTTTGG 59.480 55.000 15.93 0.00 0.00 3.28
59 60 0.109919 CCTACGCGAAAAGGTTTGGC 60.110 55.000 15.93 0.00 0.00 4.52
60 61 0.109919 CTACGCGAAAAGGTTTGGCC 60.110 55.000 15.93 0.00 37.58 5.36
70 71 1.681229 AGGTTTGGCCTCCCTTATCA 58.319 50.000 3.32 0.00 46.96 2.15
71 72 2.217776 AGGTTTGGCCTCCCTTATCAT 58.782 47.619 3.32 0.00 46.96 2.45
72 73 2.175715 AGGTTTGGCCTCCCTTATCATC 59.824 50.000 3.32 0.00 46.96 2.92
73 74 2.587522 GTTTGGCCTCCCTTATCATCC 58.412 52.381 3.32 0.00 0.00 3.51
74 75 2.175715 GTTTGGCCTCCCTTATCATCCT 59.824 50.000 3.32 0.00 0.00 3.24
75 76 1.734655 TGGCCTCCCTTATCATCCTC 58.265 55.000 3.32 0.00 0.00 3.71
76 77 1.061424 TGGCCTCCCTTATCATCCTCA 60.061 52.381 3.32 0.00 0.00 3.86
77 78 1.349357 GGCCTCCCTTATCATCCTCAC 59.651 57.143 0.00 0.00 0.00 3.51
78 79 1.001406 GCCTCCCTTATCATCCTCACG 59.999 57.143 0.00 0.00 0.00 4.35
79 80 1.620819 CCTCCCTTATCATCCTCACGG 59.379 57.143 0.00 0.00 0.00 4.94
80 81 1.001406 CTCCCTTATCATCCTCACGGC 59.999 57.143 0.00 0.00 0.00 5.68
81 82 0.035458 CCCTTATCATCCTCACGGCC 59.965 60.000 0.00 0.00 0.00 6.13
82 83 1.051812 CCTTATCATCCTCACGGCCT 58.948 55.000 0.00 0.00 0.00 5.19
83 84 1.270518 CCTTATCATCCTCACGGCCTG 60.271 57.143 0.00 0.00 0.00 4.85
84 85 0.758734 TTATCATCCTCACGGCCTGG 59.241 55.000 0.00 0.00 0.00 4.45
85 86 0.398522 TATCATCCTCACGGCCTGGT 60.399 55.000 0.00 0.00 0.00 4.00
86 87 1.976132 ATCATCCTCACGGCCTGGTG 61.976 60.000 0.00 2.18 39.29 4.17
87 88 3.402681 ATCCTCACGGCCTGGTGG 61.403 66.667 10.46 7.89 38.46 4.61
119 120 2.456000 GGAACGCTTGCATCTTCGA 58.544 52.632 0.00 0.00 0.00 3.71
120 121 0.095417 GGAACGCTTGCATCTTCGAC 59.905 55.000 0.00 0.00 0.00 4.20
121 122 0.246912 GAACGCTTGCATCTTCGACG 60.247 55.000 0.00 0.00 0.00 5.12
122 123 1.626654 AACGCTTGCATCTTCGACGG 61.627 55.000 0.00 0.00 0.00 4.79
123 124 2.401195 GCTTGCATCTTCGACGGC 59.599 61.111 0.00 0.00 0.00 5.68
124 125 2.697425 CTTGCATCTTCGACGGCG 59.303 61.111 2.87 2.87 39.35 6.46
125 126 1.805539 CTTGCATCTTCGACGGCGA 60.806 57.895 10.67 10.67 46.33 5.54
139 140 4.166888 GCGAGCAGCCCTCCATCA 62.167 66.667 0.00 0.00 40.81 3.07
140 141 2.202987 CGAGCAGCCCTCCATCAC 60.203 66.667 0.00 0.00 37.27 3.06
141 142 2.191641 GAGCAGCCCTCCATCACC 59.808 66.667 0.00 0.00 34.35 4.02
142 143 2.285969 AGCAGCCCTCCATCACCT 60.286 61.111 0.00 0.00 0.00 4.00
143 144 2.124403 GCAGCCCTCCATCACCTG 60.124 66.667 0.00 0.00 0.00 4.00
145 146 3.415087 AGCCCTCCATCACCTGGC 61.415 66.667 0.00 0.00 45.52 4.85
146 147 3.415087 GCCCTCCATCACCTGGCT 61.415 66.667 0.00 0.00 45.52 4.75
147 148 2.988839 GCCCTCCATCACCTGGCTT 61.989 63.158 0.00 0.00 45.52 4.35
148 149 1.693640 CCCTCCATCACCTGGCTTT 59.306 57.895 0.00 0.00 45.52 3.51
149 150 0.394899 CCCTCCATCACCTGGCTTTC 60.395 60.000 0.00 0.00 45.52 2.62
150 151 0.394899 CCTCCATCACCTGGCTTTCC 60.395 60.000 0.00 0.00 45.52 3.13
151 152 0.745845 CTCCATCACCTGGCTTTCCG 60.746 60.000 0.00 0.00 45.52 4.30
152 153 1.198094 TCCATCACCTGGCTTTCCGA 61.198 55.000 0.00 0.00 45.52 4.55
153 154 1.026718 CCATCACCTGGCTTTCCGAC 61.027 60.000 0.00 0.00 38.47 4.79
154 155 0.321564 CATCACCTGGCTTTCCGACA 60.322 55.000 0.00 0.00 34.14 4.35
155 156 0.620556 ATCACCTGGCTTTCCGACAT 59.379 50.000 0.00 0.00 34.14 3.06
156 157 0.036388 TCACCTGGCTTTCCGACATC 60.036 55.000 0.00 0.00 34.14 3.06
157 158 0.321564 CACCTGGCTTTCCGACATCA 60.322 55.000 0.00 0.00 34.14 3.07
158 159 0.620556 ACCTGGCTTTCCGACATCAT 59.379 50.000 0.00 0.00 34.14 2.45
159 160 1.303309 CCTGGCTTTCCGACATCATC 58.697 55.000 0.00 0.00 34.14 2.92
160 161 1.303309 CTGGCTTTCCGACATCATCC 58.697 55.000 0.00 0.00 34.14 3.51
161 162 0.461870 TGGCTTTCCGACATCATCCG 60.462 55.000 0.00 0.00 34.14 4.18
162 163 0.179084 GGCTTTCCGACATCATCCGA 60.179 55.000 0.00 0.00 0.00 4.55
163 164 1.212616 GCTTTCCGACATCATCCGAG 58.787 55.000 0.00 0.00 0.00 4.63
164 165 1.202417 GCTTTCCGACATCATCCGAGA 60.202 52.381 0.00 0.00 0.00 4.04
165 166 2.464865 CTTTCCGACATCATCCGAGAC 58.535 52.381 0.00 0.00 0.00 3.36
166 167 1.470051 TTCCGACATCATCCGAGACA 58.530 50.000 0.00 0.00 0.00 3.41
167 168 1.470051 TCCGACATCATCCGAGACAA 58.530 50.000 0.00 0.00 0.00 3.18
168 169 1.822371 TCCGACATCATCCGAGACAAA 59.178 47.619 0.00 0.00 0.00 2.83
169 170 2.159240 TCCGACATCATCCGAGACAAAG 60.159 50.000 0.00 0.00 0.00 2.77
170 171 1.590238 CGACATCATCCGAGACAAAGC 59.410 52.381 0.00 0.00 0.00 3.51
171 172 1.590238 GACATCATCCGAGACAAAGCG 59.410 52.381 0.00 0.00 0.00 4.68
172 173 0.302890 CATCATCCGAGACAAAGCGC 59.697 55.000 0.00 0.00 0.00 5.92
173 174 0.108186 ATCATCCGAGACAAAGCGCA 60.108 50.000 11.47 0.00 0.00 6.09
174 175 1.014044 TCATCCGAGACAAAGCGCAC 61.014 55.000 11.47 0.00 0.00 5.34
175 176 1.005037 ATCCGAGACAAAGCGCACA 60.005 52.632 11.47 0.00 0.00 4.57
176 177 0.391661 ATCCGAGACAAAGCGCACAT 60.392 50.000 11.47 0.00 0.00 3.21
177 178 1.133253 CCGAGACAAAGCGCACATG 59.867 57.895 11.47 7.95 0.00 3.21
178 179 1.568612 CCGAGACAAAGCGCACATGT 61.569 55.000 11.47 11.64 0.00 3.21
179 180 0.451628 CGAGACAAAGCGCACATGTG 60.452 55.000 21.83 21.83 0.00 3.21
180 181 0.110056 GAGACAAAGCGCACATGTGG 60.110 55.000 26.55 17.21 0.00 4.17
181 182 1.081242 GACAAAGCGCACATGTGGG 60.081 57.895 32.24 32.24 45.07 4.61
187 188 3.751246 CGCACATGTGGGCCAAGG 61.751 66.667 27.32 2.79 42.67 3.61
188 189 4.073200 GCACATGTGGGCCAAGGC 62.073 66.667 26.55 6.37 38.87 4.35
209 210 3.276091 CGCCAACGGACTGCACAA 61.276 61.111 0.00 0.00 34.97 3.33
210 211 2.331451 GCCAACGGACTGCACAAC 59.669 61.111 0.00 0.00 0.00 3.32
211 212 2.477176 GCCAACGGACTGCACAACA 61.477 57.895 0.00 0.00 0.00 3.33
212 213 1.355210 CCAACGGACTGCACAACAC 59.645 57.895 0.00 0.00 0.00 3.32
213 214 1.355210 CAACGGACTGCACAACACC 59.645 57.895 0.00 0.00 0.00 4.16
214 215 1.078072 AACGGACTGCACAACACCA 60.078 52.632 0.00 0.00 0.00 4.17
215 216 0.465460 AACGGACTGCACAACACCAT 60.465 50.000 0.00 0.00 0.00 3.55
216 217 0.465460 ACGGACTGCACAACACCATT 60.465 50.000 0.00 0.00 0.00 3.16
217 218 0.238289 CGGACTGCACAACACCATTC 59.762 55.000 0.00 0.00 0.00 2.67
218 219 0.598065 GGACTGCACAACACCATTCC 59.402 55.000 0.00 0.00 0.00 3.01
219 220 0.598065 GACTGCACAACACCATTCCC 59.402 55.000 0.00 0.00 0.00 3.97
220 221 1.172180 ACTGCACAACACCATTCCCG 61.172 55.000 0.00 0.00 0.00 5.14
221 222 0.888736 CTGCACAACACCATTCCCGA 60.889 55.000 0.00 0.00 0.00 5.14
222 223 0.888736 TGCACAACACCATTCCCGAG 60.889 55.000 0.00 0.00 0.00 4.63
223 224 0.889186 GCACAACACCATTCCCGAGT 60.889 55.000 0.00 0.00 0.00 4.18
224 225 0.874390 CACAACACCATTCCCGAGTG 59.126 55.000 0.00 0.00 37.53 3.51
225 226 0.762418 ACAACACCATTCCCGAGTGA 59.238 50.000 0.00 0.00 35.47 3.41
226 227 1.351017 ACAACACCATTCCCGAGTGAT 59.649 47.619 0.00 0.00 35.47 3.06
227 228 2.569853 ACAACACCATTCCCGAGTGATA 59.430 45.455 0.00 0.00 35.47 2.15
228 229 3.198068 CAACACCATTCCCGAGTGATAG 58.802 50.000 0.00 0.00 35.47 2.08
229 230 1.139058 ACACCATTCCCGAGTGATAGC 59.861 52.381 0.00 0.00 35.47 2.97
230 231 1.138859 CACCATTCCCGAGTGATAGCA 59.861 52.381 0.00 0.00 33.21 3.49
231 232 1.139058 ACCATTCCCGAGTGATAGCAC 59.861 52.381 2.01 2.01 45.49 4.40
246 247 5.992217 GTGATAGCACTATAAGTTTCTGGGG 59.008 44.000 3.28 0.00 41.84 4.96
247 248 3.283259 AGCACTATAAGTTTCTGGGGC 57.717 47.619 0.00 0.00 0.00 5.80
248 249 2.846827 AGCACTATAAGTTTCTGGGGCT 59.153 45.455 0.00 0.00 0.00 5.19
249 250 2.945668 GCACTATAAGTTTCTGGGGCTG 59.054 50.000 0.00 0.00 0.00 4.85
250 251 3.370527 GCACTATAAGTTTCTGGGGCTGA 60.371 47.826 0.00 0.00 0.00 4.26
251 252 4.446371 CACTATAAGTTTCTGGGGCTGAG 58.554 47.826 0.00 0.00 0.00 3.35
252 253 2.426842 ATAAGTTTCTGGGGCTGAGC 57.573 50.000 0.00 0.00 0.00 4.26
253 254 1.064003 TAAGTTTCTGGGGCTGAGCA 58.936 50.000 6.82 0.00 0.00 4.26
254 255 0.185901 AAGTTTCTGGGGCTGAGCAA 59.814 50.000 6.82 0.00 0.00 3.91
255 256 0.538287 AGTTTCTGGGGCTGAGCAAC 60.538 55.000 6.82 0.37 0.00 4.17
256 257 1.228552 TTTCTGGGGCTGAGCAACC 60.229 57.895 6.82 8.73 0.00 3.77
257 258 2.713531 TTTCTGGGGCTGAGCAACCC 62.714 60.000 11.37 11.37 46.24 4.11
261 262 2.757099 GGGCTGAGCAACCCCATG 60.757 66.667 6.82 0.00 40.56 3.66
262 263 2.036256 GGCTGAGCAACCCCATGT 59.964 61.111 6.82 0.00 0.00 3.21
263 264 2.048603 GGCTGAGCAACCCCATGTC 61.049 63.158 6.82 0.00 0.00 3.06
264 265 1.001641 GCTGAGCAACCCCATGTCT 60.002 57.895 0.00 0.00 0.00 3.41
265 266 1.310933 GCTGAGCAACCCCATGTCTG 61.311 60.000 0.00 0.00 0.00 3.51
266 267 0.037303 CTGAGCAACCCCATGTCTGT 59.963 55.000 0.00 0.00 0.00 3.41
267 268 0.250858 TGAGCAACCCCATGTCTGTG 60.251 55.000 0.00 0.00 0.00 3.66
268 269 1.589716 GAGCAACCCCATGTCTGTGC 61.590 60.000 0.00 0.00 0.00 4.57
269 270 1.604593 GCAACCCCATGTCTGTGCT 60.605 57.895 0.00 0.00 0.00 4.40
270 271 1.870055 GCAACCCCATGTCTGTGCTG 61.870 60.000 0.00 0.00 0.00 4.41
271 272 1.604593 AACCCCATGTCTGTGCTGC 60.605 57.895 0.00 0.00 0.00 5.25
272 273 2.072874 AACCCCATGTCTGTGCTGCT 62.073 55.000 0.00 0.00 0.00 4.24
273 274 1.748122 CCCCATGTCTGTGCTGCTC 60.748 63.158 0.00 0.00 0.00 4.26
274 275 1.748122 CCCATGTCTGTGCTGCTCC 60.748 63.158 0.00 0.00 0.00 4.70
275 276 1.298993 CCATGTCTGTGCTGCTCCT 59.701 57.895 0.00 0.00 0.00 3.69
276 277 1.025113 CCATGTCTGTGCTGCTCCTG 61.025 60.000 0.00 0.00 0.00 3.86
277 278 1.025113 CATGTCTGTGCTGCTCCTGG 61.025 60.000 0.00 0.00 0.00 4.45
278 279 2.745492 GTCTGTGCTGCTCCTGGC 60.745 66.667 0.00 0.00 42.22 4.85
279 280 2.926779 TCTGTGCTGCTCCTGGCT 60.927 61.111 0.00 0.00 42.39 4.75
280 281 2.436292 CTGTGCTGCTCCTGGCTC 60.436 66.667 0.00 0.00 42.39 4.70
281 282 4.383861 TGTGCTGCTCCTGGCTCG 62.384 66.667 0.00 0.00 42.39 5.03
284 285 4.774503 GCTGCTCCTGGCTCGCTT 62.775 66.667 0.00 0.00 42.39 4.68
285 286 2.511145 CTGCTCCTGGCTCGCTTC 60.511 66.667 0.00 0.00 42.39 3.86
286 287 4.087892 TGCTCCTGGCTCGCTTCC 62.088 66.667 0.00 0.00 42.39 3.46
287 288 4.087892 GCTCCTGGCTCGCTTCCA 62.088 66.667 0.00 0.00 38.06 3.53
288 289 2.906458 CTCCTGGCTCGCTTCCAT 59.094 61.111 0.00 0.00 32.37 3.41
289 290 1.523258 CTCCTGGCTCGCTTCCATG 60.523 63.158 0.00 0.00 32.37 3.66
290 291 3.207669 CCTGGCTCGCTTCCATGC 61.208 66.667 0.00 0.00 32.37 4.06
291 292 3.207669 CTGGCTCGCTTCCATGCC 61.208 66.667 0.00 0.00 45.10 4.40
292 293 3.694058 CTGGCTCGCTTCCATGCCT 62.694 63.158 0.00 0.00 45.11 4.75
293 294 2.439156 GGCTCGCTTCCATGCCTT 60.439 61.111 0.00 0.00 41.92 4.35
294 295 2.476320 GGCTCGCTTCCATGCCTTC 61.476 63.158 0.00 0.00 41.92 3.46
295 296 2.476320 GCTCGCTTCCATGCCTTCC 61.476 63.158 0.00 0.00 0.00 3.46
296 297 1.222936 CTCGCTTCCATGCCTTCCT 59.777 57.895 0.00 0.00 0.00 3.36
297 298 1.078214 TCGCTTCCATGCCTTCCTG 60.078 57.895 0.00 0.00 0.00 3.86
298 299 1.377725 CGCTTCCATGCCTTCCTGT 60.378 57.895 0.00 0.00 0.00 4.00
299 300 1.651240 CGCTTCCATGCCTTCCTGTG 61.651 60.000 0.00 0.00 0.00 3.66
300 301 0.610232 GCTTCCATGCCTTCCTGTGT 60.610 55.000 0.00 0.00 0.00 3.72
301 302 1.340017 GCTTCCATGCCTTCCTGTGTA 60.340 52.381 0.00 0.00 0.00 2.90
302 303 2.359900 CTTCCATGCCTTCCTGTGTAC 58.640 52.381 0.00 0.00 0.00 2.90
303 304 1.357137 TCCATGCCTTCCTGTGTACA 58.643 50.000 0.00 0.00 0.00 2.90
304 305 1.915489 TCCATGCCTTCCTGTGTACAT 59.085 47.619 0.00 0.00 0.00 2.29
305 306 2.019249 CCATGCCTTCCTGTGTACATG 58.981 52.381 0.00 0.00 35.73 3.21
306 307 2.019249 CATGCCTTCCTGTGTACATGG 58.981 52.381 0.00 5.14 33.06 3.66
307 308 0.322456 TGCCTTCCTGTGTACATGGC 60.322 55.000 0.00 7.34 39.33 4.40
308 309 0.035056 GCCTTCCTGTGTACATGGCT 60.035 55.000 0.00 0.00 36.32 4.75
309 310 1.614317 GCCTTCCTGTGTACATGGCTT 60.614 52.381 0.00 0.00 36.32 4.35
310 311 2.355716 GCCTTCCTGTGTACATGGCTTA 60.356 50.000 0.00 0.00 36.32 3.09
311 312 3.535561 CCTTCCTGTGTACATGGCTTAG 58.464 50.000 0.00 3.80 0.00 2.18
312 313 2.691409 TCCTGTGTACATGGCTTAGC 57.309 50.000 0.00 0.00 0.00 3.09
313 314 1.134818 TCCTGTGTACATGGCTTAGCG 60.135 52.381 0.00 0.00 0.00 4.26
314 315 1.134818 CCTGTGTACATGGCTTAGCGA 60.135 52.381 0.00 0.00 0.00 4.93
315 316 2.196749 CTGTGTACATGGCTTAGCGAG 58.803 52.381 0.00 0.00 0.00 5.03
328 329 3.385577 CTTAGCGAGCTCTTGTAATCCC 58.614 50.000 12.85 0.00 0.00 3.85
329 330 1.195115 AGCGAGCTCTTGTAATCCCA 58.805 50.000 12.85 0.00 0.00 4.37
330 331 1.765314 AGCGAGCTCTTGTAATCCCAT 59.235 47.619 12.85 0.00 0.00 4.00
331 332 1.869767 GCGAGCTCTTGTAATCCCATG 59.130 52.381 12.85 0.00 0.00 3.66
332 333 1.869767 CGAGCTCTTGTAATCCCATGC 59.130 52.381 12.85 0.00 0.00 4.06
333 334 2.484417 CGAGCTCTTGTAATCCCATGCT 60.484 50.000 12.85 0.00 0.00 3.79
334 335 2.877168 GAGCTCTTGTAATCCCATGCTG 59.123 50.000 6.43 0.00 0.00 4.41
335 336 2.240667 AGCTCTTGTAATCCCATGCTGT 59.759 45.455 0.00 0.00 0.00 4.40
336 337 3.455910 AGCTCTTGTAATCCCATGCTGTA 59.544 43.478 0.00 0.00 0.00 2.74
337 338 3.561725 GCTCTTGTAATCCCATGCTGTAC 59.438 47.826 0.00 0.00 0.00 2.90
338 339 4.769688 CTCTTGTAATCCCATGCTGTACA 58.230 43.478 0.00 0.00 0.00 2.90
339 340 5.172687 TCTTGTAATCCCATGCTGTACAA 57.827 39.130 0.00 8.36 34.44 2.41
340 341 5.565509 TCTTGTAATCCCATGCTGTACAAA 58.434 37.500 0.00 0.00 35.03 2.83
341 342 5.414454 TCTTGTAATCCCATGCTGTACAAAC 59.586 40.000 0.00 0.00 35.03 2.93
342 343 4.917385 TGTAATCCCATGCTGTACAAACT 58.083 39.130 0.00 0.00 0.00 2.66
343 344 4.941263 TGTAATCCCATGCTGTACAAACTC 59.059 41.667 0.00 0.00 0.00 3.01
344 345 4.307032 AATCCCATGCTGTACAAACTCT 57.693 40.909 0.00 0.00 0.00 3.24
345 346 3.788227 TCCCATGCTGTACAAACTCTT 57.212 42.857 0.00 0.00 0.00 2.85
346 347 3.674997 TCCCATGCTGTACAAACTCTTC 58.325 45.455 0.00 0.00 0.00 2.87
347 348 3.327757 TCCCATGCTGTACAAACTCTTCT 59.672 43.478 0.00 0.00 0.00 2.85
348 349 3.686726 CCCATGCTGTACAAACTCTTCTC 59.313 47.826 0.00 0.00 0.00 2.87
349 350 3.686726 CCATGCTGTACAAACTCTTCTCC 59.313 47.826 0.00 0.00 0.00 3.71
350 351 4.564406 CCATGCTGTACAAACTCTTCTCCT 60.564 45.833 0.00 0.00 0.00 3.69
351 352 5.337571 CCATGCTGTACAAACTCTTCTCCTA 60.338 44.000 0.00 0.00 0.00 2.94
352 353 6.344500 CATGCTGTACAAACTCTTCTCCTAT 58.656 40.000 0.00 0.00 0.00 2.57
353 354 5.967088 TGCTGTACAAACTCTTCTCCTATC 58.033 41.667 0.00 0.00 0.00 2.08
354 355 5.480422 TGCTGTACAAACTCTTCTCCTATCA 59.520 40.000 0.00 0.00 0.00 2.15
355 356 6.014584 TGCTGTACAAACTCTTCTCCTATCAA 60.015 38.462 0.00 0.00 0.00 2.57
356 357 7.044798 GCTGTACAAACTCTTCTCCTATCAAT 58.955 38.462 0.00 0.00 0.00 2.57
357 358 7.010923 GCTGTACAAACTCTTCTCCTATCAATG 59.989 40.741 0.00 0.00 0.00 2.82
358 359 8.134202 TGTACAAACTCTTCTCCTATCAATGA 57.866 34.615 0.00 0.00 0.00 2.57
359 360 8.593679 TGTACAAACTCTTCTCCTATCAATGAA 58.406 33.333 0.00 0.00 0.00 2.57
360 361 9.436957 GTACAAACTCTTCTCCTATCAATGAAA 57.563 33.333 0.00 0.00 0.00 2.69
361 362 8.924511 ACAAACTCTTCTCCTATCAATGAAAA 57.075 30.769 0.00 0.00 0.00 2.29
362 363 9.007901 ACAAACTCTTCTCCTATCAATGAAAAG 57.992 33.333 0.00 0.00 0.00 2.27
363 364 9.224267 CAAACTCTTCTCCTATCAATGAAAAGA 57.776 33.333 0.00 0.00 0.00 2.52
364 365 9.972106 AAACTCTTCTCCTATCAATGAAAAGAT 57.028 29.630 0.00 0.00 0.00 2.40
367 368 9.190858 CTCTTCTCCTATCAATGAAAAGATACG 57.809 37.037 0.00 0.00 0.00 3.06
368 369 7.653713 TCTTCTCCTATCAATGAAAAGATACGC 59.346 37.037 0.00 0.00 0.00 4.42
369 370 6.816136 TCTCCTATCAATGAAAAGATACGCA 58.184 36.000 0.00 0.00 0.00 5.24
370 371 6.701841 TCTCCTATCAATGAAAAGATACGCAC 59.298 38.462 0.00 0.00 0.00 5.34
371 372 5.758296 TCCTATCAATGAAAAGATACGCACC 59.242 40.000 0.00 0.00 0.00 5.01
372 373 4.900635 ATCAATGAAAAGATACGCACCC 57.099 40.909 0.00 0.00 0.00 4.61
373 374 3.950397 TCAATGAAAAGATACGCACCCT 58.050 40.909 0.00 0.00 0.00 4.34
374 375 3.938963 TCAATGAAAAGATACGCACCCTC 59.061 43.478 0.00 0.00 0.00 4.30
375 376 3.914426 ATGAAAAGATACGCACCCTCT 57.086 42.857 0.00 0.00 0.00 3.69
376 377 5.105106 TCAATGAAAAGATACGCACCCTCTA 60.105 40.000 0.00 0.00 0.00 2.43
377 378 4.119442 TGAAAAGATACGCACCCTCTAC 57.881 45.455 0.00 0.00 0.00 2.59
378 379 2.865343 AAAGATACGCACCCTCTACG 57.135 50.000 0.00 0.00 0.00 3.51
379 380 1.760192 AAGATACGCACCCTCTACGT 58.240 50.000 0.00 0.00 43.45 3.57
380 381 2.627515 AGATACGCACCCTCTACGTA 57.372 50.000 0.00 0.00 45.26 3.57
384 385 0.379669 ACGCACCCTCTACGTATTCG 59.620 55.000 0.00 0.00 38.45 3.34
420 421 9.329913 CTAAAACTGTCAGAAAAATACATTCGG 57.670 33.333 6.91 0.00 32.04 4.30
422 423 7.972832 AACTGTCAGAAAAATACATTCGGTA 57.027 32.000 6.91 0.00 36.16 4.02
423 424 7.596749 ACTGTCAGAAAAATACATTCGGTAG 57.403 36.000 6.91 0.00 34.92 3.18
424 425 6.092259 ACTGTCAGAAAAATACATTCGGTAGC 59.908 38.462 6.91 0.00 34.92 3.58
427 428 6.038271 GTCAGAAAAATACATTCGGTAGCCAT 59.962 38.462 0.00 0.00 34.92 4.40
444 445 0.907486 CATCCTCTTCCCAGCTGACA 59.093 55.000 17.39 0.00 0.00 3.58
499 502 9.634163 GGACTGAAAATGTCGGTATTAAATTTT 57.366 29.630 0.00 0.00 46.43 1.82
832 835 3.417224 CACGCACGCACAGCTCAT 61.417 61.111 0.00 0.00 0.00 2.90
1286 1455 2.063015 TTTTTCCAGGGGCTGCTCGA 62.063 55.000 0.00 0.00 0.00 4.04
1306 1475 6.632035 GCTCGAATGAATTTTTATCTGCTCTG 59.368 38.462 0.00 0.00 0.00 3.35
1756 1981 3.296322 TTTTCGGTTTATTGCCTGCAG 57.704 42.857 6.78 6.78 0.00 4.41
1757 1982 1.173043 TTCGGTTTATTGCCTGCAGG 58.827 50.000 29.34 29.34 38.53 4.85
1814 2039 2.351706 ACCCCTTGCTCGTGTAAAAA 57.648 45.000 0.00 0.00 0.00 1.94
2014 2638 6.173339 GGACCTTTTCAGACATAAGTGATCA 58.827 40.000 0.00 0.00 0.00 2.92
2324 2948 4.457603 GTGTTTATTGTGTGCAGGGACATA 59.542 41.667 0.00 0.00 0.00 2.29
2587 3287 7.814107 TCAAAATGTGGAAAGTTGATAAGATGC 59.186 33.333 0.00 0.00 0.00 3.91
3017 3855 5.348986 TCTCTCGCACAATATGTTTACTCC 58.651 41.667 0.00 0.00 0.00 3.85
3397 4322 7.907214 ACTGAGTACAATTTGGTCTGTTATC 57.093 36.000 0.78 0.00 0.00 1.75
3436 4361 9.613428 TGTTGGAAATTGTACTTAGGAGATATG 57.387 33.333 0.00 0.00 0.00 1.78
3510 4485 7.041372 TCCTCATAGTTTAGCAACTTGAACAAC 60.041 37.037 0.00 0.00 40.66 3.32
3512 4487 8.220755 TCATAGTTTAGCAACTTGAACAACTT 57.779 30.769 0.00 0.00 40.66 2.66
3513 4488 8.128582 TCATAGTTTAGCAACTTGAACAACTTG 58.871 33.333 0.00 0.00 40.66 3.16
3514 4489 5.650543 AGTTTAGCAACTTGAACAACTTGG 58.349 37.500 0.00 0.00 40.66 3.61
3563 4736 8.529476 TGGAGTCTAAATCTAAGACCTGTAAAC 58.471 37.037 0.00 0.00 43.64 2.01
3607 4780 3.686227 TCATCATATTTTGCCCCACCT 57.314 42.857 0.00 0.00 0.00 4.00
3728 4901 7.959651 GCATATGCACTAATACTAATCAACTGC 59.040 37.037 22.84 0.00 41.59 4.40
3760 4933 8.374327 ACTTATGTGTTGGAGTAAACTTGTAC 57.626 34.615 0.00 0.00 0.00 2.90
4075 5265 8.611757 TGATTTGAATTGACACAGGATTATACG 58.388 33.333 0.00 0.00 0.00 3.06
4298 5488 4.135306 CCATTTCTACTGCATGAGCTGAT 58.865 43.478 0.00 0.00 41.71 2.90
4314 5504 4.592942 AGCTGATACCACACATCATTTGT 58.407 39.130 0.00 0.00 39.91 2.83
4359 5549 4.452114 CAGAATCTGACGGTGAATTGTTCA 59.548 41.667 3.77 0.00 33.28 3.18
4394 5584 0.253044 TATGAGCAGGCCACTTGACC 59.747 55.000 5.01 0.00 0.00 4.02
4853 6043 1.424493 CGAGCCTCCTTCGTTCATGC 61.424 60.000 0.00 0.00 33.57 4.06
5058 7496 3.634397 ATGTGGTGGTGATAAGACAGG 57.366 47.619 0.00 0.00 0.00 4.00
5155 7593 9.010029 TGAAATGGAGGTCAACTTTACTTTATC 57.990 33.333 0.00 0.00 0.00 1.75
5207 7645 7.986085 ATTAGTATGTGGAATGGCTTCATAC 57.014 36.000 0.00 0.00 40.26 2.39
5237 7683 4.164294 GTTTCTTCAGATTGTGCATGCTC 58.836 43.478 20.33 16.39 0.00 4.26
5321 7772 0.608308 GGAAACCTAAAGCACCGCCT 60.608 55.000 0.00 0.00 0.00 5.52
5395 7846 3.376918 GAAGCCCTGCAGGTTGGC 61.377 66.667 30.63 25.50 45.70 4.52
5493 7944 1.492599 GCCTTCCCTCCTCTATGCTTT 59.507 52.381 0.00 0.00 0.00 3.51
5558 8013 3.234630 CTGGCGTCGTTTCCCTCCA 62.235 63.158 0.00 0.00 0.00 3.86
5596 8052 2.927856 TTGGCCGGCTGAGGAGAA 60.928 61.111 28.56 5.08 0.00 2.87
5655 8111 3.499737 CGCGTGTCCTCCCAATGC 61.500 66.667 0.00 0.00 0.00 3.56
5685 10103 0.770557 AGGGGCTTCTTGGGTGTGTA 60.771 55.000 0.00 0.00 0.00 2.90
5697 10115 4.157849 TGGGTGTGTATGTTGTTTCTCA 57.842 40.909 0.00 0.00 0.00 3.27
5702 10120 6.205853 GGGTGTGTATGTTGTTTCTCAATGTA 59.794 38.462 0.00 0.00 38.38 2.29
5704 10122 7.589954 GGTGTGTATGTTGTTTCTCAATGTAAC 59.410 37.037 0.00 0.00 38.38 2.50
5706 10124 7.011576 TGTGTATGTTGTTTCTCAATGTAACGT 59.988 33.333 0.00 0.00 38.38 3.99
5711 10129 5.666969 TGTTTCTCAATGTAACGTGAAGG 57.333 39.130 0.00 0.00 0.00 3.46
5729 10147 1.139058 AGGAGTCGAAGTTGTGTGCTT 59.861 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067071 GTCGTCTCCCACCAGGTAAAG 60.067 57.143 0.00 0.00 36.75 1.85
1 2 0.971386 GTCGTCTCCCACCAGGTAAA 59.029 55.000 0.00 0.00 36.75 2.01
2 3 0.901580 GGTCGTCTCCCACCAGGTAA 60.902 60.000 0.00 0.00 36.75 2.85
3 4 1.304713 GGTCGTCTCCCACCAGGTA 60.305 63.158 0.00 0.00 36.75 3.08
4 5 2.603776 GGTCGTCTCCCACCAGGT 60.604 66.667 0.00 0.00 36.75 4.00
5 6 2.283966 AGGTCGTCTCCCACCAGG 60.284 66.667 0.00 0.00 34.80 4.45
7 8 3.311110 GCAGGTCGTCTCCCACCA 61.311 66.667 0.00 0.00 34.80 4.17
8 9 2.879233 TTGCAGGTCGTCTCCCACC 61.879 63.158 0.00 0.00 0.00 4.61
10 11 2.741092 GTTGCAGGTCGTCTCCCA 59.259 61.111 0.00 0.00 0.00 4.37
12 13 2.432628 CGGTTGCAGGTCGTCTCC 60.433 66.667 0.00 0.00 0.00 3.71
15 16 1.007038 TACACGGTTGCAGGTCGTC 60.007 57.895 7.84 0.00 34.73 4.20
16 17 1.300388 GTACACGGTTGCAGGTCGT 60.300 57.895 5.45 5.45 37.64 4.34
17 18 2.025418 GGTACACGGTTGCAGGTCG 61.025 63.158 0.00 4.32 0.00 4.79
19 20 3.232314 TGGTACACGGTTGCAGGT 58.768 55.556 0.00 0.00 0.00 4.00
28 29 2.672908 CGCGTAGGGGATGGTACACG 62.673 65.000 0.00 0.00 37.99 4.49
29 30 1.066918 CGCGTAGGGGATGGTACAC 59.933 63.158 0.00 0.00 37.99 2.90
30 31 0.683828 TTCGCGTAGGGGATGGTACA 60.684 55.000 5.77 0.00 42.89 2.90
31 32 0.461135 TTTCGCGTAGGGGATGGTAC 59.539 55.000 5.77 0.00 42.39 3.34
32 33 1.137479 CTTTTCGCGTAGGGGATGGTA 59.863 52.381 5.77 0.00 42.39 3.25
33 34 0.107848 CTTTTCGCGTAGGGGATGGT 60.108 55.000 5.77 0.00 42.39 3.55
34 35 0.814010 CCTTTTCGCGTAGGGGATGG 60.814 60.000 5.77 3.30 42.39 3.51
35 36 0.107848 ACCTTTTCGCGTAGGGGATG 60.108 55.000 22.03 3.69 42.39 3.51
36 37 0.616891 AACCTTTTCGCGTAGGGGAT 59.383 50.000 22.03 8.22 42.39 3.85
37 38 0.397564 AAACCTTTTCGCGTAGGGGA 59.602 50.000 22.03 0.00 42.39 4.81
38 39 0.519961 CAAACCTTTTCGCGTAGGGG 59.480 55.000 22.03 15.81 42.39 4.79
39 40 0.519961 CCAAACCTTTTCGCGTAGGG 59.480 55.000 22.03 16.42 44.04 3.53
40 41 0.109919 GCCAAACCTTTTCGCGTAGG 60.110 55.000 18.43 18.43 37.56 3.18
41 42 0.109919 GGCCAAACCTTTTCGCGTAG 60.110 55.000 5.77 2.13 34.51 3.51
42 43 1.950758 GGCCAAACCTTTTCGCGTA 59.049 52.632 5.77 0.00 34.51 4.42
43 44 2.725641 GGCCAAACCTTTTCGCGT 59.274 55.556 5.77 0.00 34.51 6.01
52 53 2.587522 GATGATAAGGGAGGCCAAACC 58.412 52.381 5.01 3.43 39.61 3.27
53 54 2.175715 AGGATGATAAGGGAGGCCAAAC 59.824 50.000 5.01 0.00 0.00 2.93
54 55 2.443255 GAGGATGATAAGGGAGGCCAAA 59.557 50.000 5.01 0.00 0.00 3.28
55 56 2.057922 GAGGATGATAAGGGAGGCCAA 58.942 52.381 5.01 0.00 0.00 4.52
56 57 1.061424 TGAGGATGATAAGGGAGGCCA 60.061 52.381 5.01 0.00 0.00 5.36
57 58 1.349357 GTGAGGATGATAAGGGAGGCC 59.651 57.143 0.00 0.00 0.00 5.19
58 59 1.001406 CGTGAGGATGATAAGGGAGGC 59.999 57.143 0.00 0.00 0.00 4.70
88 89 1.574428 CGTTCCGGTGCTTCCAAAG 59.426 57.895 0.00 0.00 35.57 2.77
89 90 2.548295 GCGTTCCGGTGCTTCCAAA 61.548 57.895 0.00 0.00 35.57 3.28
90 91 2.975799 GCGTTCCGGTGCTTCCAA 60.976 61.111 0.00 0.00 35.57 3.53
91 92 3.936203 AGCGTTCCGGTGCTTCCA 61.936 61.111 11.83 0.00 38.57 3.53
95 96 4.927782 TGCAAGCGTTCCGGTGCT 62.928 61.111 12.97 12.39 44.97 4.40
96 97 3.667429 GATGCAAGCGTTCCGGTGC 62.667 63.158 0.00 2.90 37.73 5.01
97 98 1.577328 AAGATGCAAGCGTTCCGGTG 61.577 55.000 0.00 0.00 37.73 4.94
98 99 1.298859 GAAGATGCAAGCGTTCCGGT 61.299 55.000 0.00 0.00 40.00 5.28
99 100 1.425428 GAAGATGCAAGCGTTCCGG 59.575 57.895 0.00 0.00 0.00 5.14
100 101 1.059369 CGAAGATGCAAGCGTTCCG 59.941 57.895 0.00 0.00 0.00 4.30
101 102 0.095417 GTCGAAGATGCAAGCGTTCC 59.905 55.000 0.00 0.00 40.67 3.62
102 103 0.246912 CGTCGAAGATGCAAGCGTTC 60.247 55.000 0.00 0.00 40.67 3.95
103 104 1.626654 CCGTCGAAGATGCAAGCGTT 61.627 55.000 0.00 0.00 43.31 4.84
104 105 2.094659 CCGTCGAAGATGCAAGCGT 61.095 57.895 0.00 0.00 43.31 5.07
105 106 2.697425 CCGTCGAAGATGCAAGCG 59.303 61.111 0.00 0.00 43.31 4.68
106 107 2.401195 GCCGTCGAAGATGCAAGC 59.599 61.111 0.00 0.00 43.31 4.01
107 108 1.746727 CTCGCCGTCGAAGATGCAAG 61.747 60.000 0.00 0.00 44.98 4.01
108 109 1.805539 CTCGCCGTCGAAGATGCAA 60.806 57.895 0.00 0.00 44.98 4.08
109 110 2.202610 CTCGCCGTCGAAGATGCA 60.203 61.111 0.00 0.00 44.98 3.96
110 111 3.621394 GCTCGCCGTCGAAGATGC 61.621 66.667 0.00 0.00 44.98 3.91
111 112 2.202610 TGCTCGCCGTCGAAGATG 60.203 61.111 0.00 0.00 44.98 2.90
112 113 2.103143 CTGCTCGCCGTCGAAGAT 59.897 61.111 0.00 0.00 44.98 2.40
113 114 4.778415 GCTGCTCGCCGTCGAAGA 62.778 66.667 0.00 0.00 44.98 2.87
122 123 4.166888 TGATGGAGGGCTGCTCGC 62.167 66.667 0.00 0.00 38.13 5.03
123 124 2.202987 GTGATGGAGGGCTGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
124 125 2.191641 GGTGATGGAGGGCTGCTC 59.808 66.667 0.00 0.00 0.00 4.26
125 126 2.285969 AGGTGATGGAGGGCTGCT 60.286 61.111 0.00 0.00 0.00 4.24
126 127 2.124403 CAGGTGATGGAGGGCTGC 60.124 66.667 0.00 0.00 0.00 5.25
135 136 0.321564 TGTCGGAAAGCCAGGTGATG 60.322 55.000 0.00 0.00 0.00 3.07
136 137 0.620556 ATGTCGGAAAGCCAGGTGAT 59.379 50.000 0.00 0.00 0.00 3.06
137 138 0.036388 GATGTCGGAAAGCCAGGTGA 60.036 55.000 0.00 0.00 0.00 4.02
138 139 0.321564 TGATGTCGGAAAGCCAGGTG 60.322 55.000 0.00 0.00 0.00 4.00
139 140 0.620556 ATGATGTCGGAAAGCCAGGT 59.379 50.000 0.00 0.00 0.00 4.00
140 141 1.303309 GATGATGTCGGAAAGCCAGG 58.697 55.000 0.00 0.00 0.00 4.45
141 142 1.303309 GGATGATGTCGGAAAGCCAG 58.697 55.000 0.00 0.00 0.00 4.85
142 143 0.461870 CGGATGATGTCGGAAAGCCA 60.462 55.000 0.00 0.00 0.00 4.75
143 144 0.179084 TCGGATGATGTCGGAAAGCC 60.179 55.000 0.00 0.00 33.74 4.35
144 145 1.202417 TCTCGGATGATGTCGGAAAGC 60.202 52.381 0.00 0.00 35.97 3.51
145 146 2.159240 TGTCTCGGATGATGTCGGAAAG 60.159 50.000 0.00 0.00 35.97 2.62
146 147 1.822371 TGTCTCGGATGATGTCGGAAA 59.178 47.619 0.00 0.00 35.97 3.13
147 148 1.470051 TGTCTCGGATGATGTCGGAA 58.530 50.000 0.00 0.00 35.97 4.30
148 149 1.470051 TTGTCTCGGATGATGTCGGA 58.530 50.000 0.00 0.00 35.23 4.55
149 150 2.196749 CTTTGTCTCGGATGATGTCGG 58.803 52.381 0.00 0.00 0.00 4.79
150 151 1.590238 GCTTTGTCTCGGATGATGTCG 59.410 52.381 0.00 0.00 0.00 4.35
151 152 1.590238 CGCTTTGTCTCGGATGATGTC 59.410 52.381 0.00 0.00 0.00 3.06
152 153 1.645034 CGCTTTGTCTCGGATGATGT 58.355 50.000 0.00 0.00 0.00 3.06
153 154 0.302890 GCGCTTTGTCTCGGATGATG 59.697 55.000 0.00 0.00 0.00 3.07
154 155 0.108186 TGCGCTTTGTCTCGGATGAT 60.108 50.000 9.73 0.00 0.00 2.45
155 156 1.014044 GTGCGCTTTGTCTCGGATGA 61.014 55.000 9.73 0.00 0.00 2.92
156 157 1.291184 TGTGCGCTTTGTCTCGGATG 61.291 55.000 9.73 0.00 0.00 3.51
157 158 0.391661 ATGTGCGCTTTGTCTCGGAT 60.392 50.000 9.73 0.00 0.00 4.18
158 159 1.005037 ATGTGCGCTTTGTCTCGGA 60.005 52.632 9.73 0.00 0.00 4.55
159 160 1.133253 CATGTGCGCTTTGTCTCGG 59.867 57.895 9.73 0.00 0.00 4.63
160 161 0.451628 CACATGTGCGCTTTGTCTCG 60.452 55.000 13.94 0.00 0.00 4.04
161 162 0.110056 CCACATGTGCGCTTTGTCTC 60.110 55.000 20.81 0.00 0.00 3.36
162 163 1.518056 CCCACATGTGCGCTTTGTCT 61.518 55.000 20.81 0.00 0.00 3.41
163 164 1.081242 CCCACATGTGCGCTTTGTC 60.081 57.895 20.81 0.00 0.00 3.18
164 165 3.041701 CCCACATGTGCGCTTTGT 58.958 55.556 20.81 6.80 0.00 2.83
165 166 2.431260 GCCCACATGTGCGCTTTG 60.431 61.111 24.80 9.08 32.05 2.77
166 167 3.683937 GGCCCACATGTGCGCTTT 61.684 61.111 29.11 0.00 34.95 3.51
167 168 4.972733 TGGCCCACATGTGCGCTT 62.973 61.111 29.11 0.00 34.95 4.68
168 169 4.972733 TTGGCCCACATGTGCGCT 62.973 61.111 29.11 0.00 34.95 5.92
169 170 4.424566 CTTGGCCCACATGTGCGC 62.425 66.667 24.22 24.22 33.87 6.09
170 171 3.751246 CCTTGGCCCACATGTGCG 61.751 66.667 20.81 13.46 0.00 5.34
171 172 4.073200 GCCTTGGCCCACATGTGC 62.073 66.667 20.81 10.04 0.00 4.57
172 173 3.384532 GGCCTTGGCCCACATGTG 61.385 66.667 19.31 19.31 0.00 3.21
192 193 3.276091 TTGTGCAGTCCGTTGGCG 61.276 61.111 0.00 0.00 37.95 5.69
193 194 2.331451 GTTGTGCAGTCCGTTGGC 59.669 61.111 0.00 0.00 0.00 4.52
194 195 1.355210 GTGTTGTGCAGTCCGTTGG 59.645 57.895 0.00 0.00 0.00 3.77
195 196 1.355210 GGTGTTGTGCAGTCCGTTG 59.645 57.895 0.00 0.00 0.00 4.10
196 197 0.465460 ATGGTGTTGTGCAGTCCGTT 60.465 50.000 0.00 0.00 0.00 4.44
197 198 0.465460 AATGGTGTTGTGCAGTCCGT 60.465 50.000 0.00 0.00 0.00 4.69
198 199 0.238289 GAATGGTGTTGTGCAGTCCG 59.762 55.000 0.00 0.00 0.00 4.79
199 200 0.598065 GGAATGGTGTTGTGCAGTCC 59.402 55.000 0.00 0.00 0.00 3.85
200 201 0.598065 GGGAATGGTGTTGTGCAGTC 59.402 55.000 0.00 0.00 0.00 3.51
201 202 1.172180 CGGGAATGGTGTTGTGCAGT 61.172 55.000 0.00 0.00 0.00 4.40
202 203 0.888736 TCGGGAATGGTGTTGTGCAG 60.889 55.000 0.00 0.00 0.00 4.41
203 204 0.888736 CTCGGGAATGGTGTTGTGCA 60.889 55.000 0.00 0.00 0.00 4.57
204 205 0.889186 ACTCGGGAATGGTGTTGTGC 60.889 55.000 0.00 0.00 0.00 4.57
205 206 0.874390 CACTCGGGAATGGTGTTGTG 59.126 55.000 0.00 0.00 0.00 3.33
206 207 0.762418 TCACTCGGGAATGGTGTTGT 59.238 50.000 0.00 0.00 33.30 3.32
207 208 2.113860 ATCACTCGGGAATGGTGTTG 57.886 50.000 0.00 0.00 33.30 3.33
208 209 2.420129 GCTATCACTCGGGAATGGTGTT 60.420 50.000 0.00 0.00 33.30 3.32
209 210 1.139058 GCTATCACTCGGGAATGGTGT 59.861 52.381 0.00 0.00 33.30 4.16
210 211 1.138859 TGCTATCACTCGGGAATGGTG 59.861 52.381 0.00 0.00 0.00 4.17
211 212 1.139058 GTGCTATCACTCGGGAATGGT 59.861 52.381 0.00 0.00 40.03 3.55
212 213 1.871080 GTGCTATCACTCGGGAATGG 58.129 55.000 0.00 0.00 40.03 3.16
222 223 5.992217 CCCCAGAAACTTATAGTGCTATCAC 59.008 44.000 0.00 0.00 43.44 3.06
223 224 5.454755 GCCCCAGAAACTTATAGTGCTATCA 60.455 44.000 0.00 0.00 0.00 2.15
224 225 4.998033 GCCCCAGAAACTTATAGTGCTATC 59.002 45.833 0.00 0.00 0.00 2.08
225 226 4.660771 AGCCCCAGAAACTTATAGTGCTAT 59.339 41.667 0.00 0.00 0.00 2.97
226 227 4.037927 AGCCCCAGAAACTTATAGTGCTA 58.962 43.478 0.00 0.00 0.00 3.49
227 228 2.846827 AGCCCCAGAAACTTATAGTGCT 59.153 45.455 0.00 0.00 0.00 4.40
228 229 2.945668 CAGCCCCAGAAACTTATAGTGC 59.054 50.000 0.00 0.00 0.00 4.40
229 230 4.446371 CTCAGCCCCAGAAACTTATAGTG 58.554 47.826 0.00 0.00 0.00 2.74
230 231 3.118223 GCTCAGCCCCAGAAACTTATAGT 60.118 47.826 0.00 0.00 0.00 2.12
231 232 3.118261 TGCTCAGCCCCAGAAACTTATAG 60.118 47.826 0.00 0.00 0.00 1.31
232 233 2.843730 TGCTCAGCCCCAGAAACTTATA 59.156 45.455 0.00 0.00 0.00 0.98
233 234 1.635487 TGCTCAGCCCCAGAAACTTAT 59.365 47.619 0.00 0.00 0.00 1.73
234 235 1.064003 TGCTCAGCCCCAGAAACTTA 58.936 50.000 0.00 0.00 0.00 2.24
235 236 0.185901 TTGCTCAGCCCCAGAAACTT 59.814 50.000 0.00 0.00 0.00 2.66
236 237 0.538287 GTTGCTCAGCCCCAGAAACT 60.538 55.000 0.00 0.00 0.00 2.66
237 238 1.527433 GGTTGCTCAGCCCCAGAAAC 61.527 60.000 0.00 0.00 0.00 2.78
238 239 1.228552 GGTTGCTCAGCCCCAGAAA 60.229 57.895 0.00 0.00 0.00 2.52
239 240 2.436109 GGTTGCTCAGCCCCAGAA 59.564 61.111 0.00 0.00 0.00 3.02
240 241 3.650950 GGGTTGCTCAGCCCCAGA 61.651 66.667 10.32 0.00 45.12 3.86
245 246 2.036256 ACATGGGGTTGCTCAGCC 59.964 61.111 0.00 0.00 43.15 4.85
246 247 1.001641 AGACATGGGGTTGCTCAGC 60.002 57.895 0.00 0.00 0.00 4.26
247 248 0.037303 ACAGACATGGGGTTGCTCAG 59.963 55.000 0.00 0.00 0.00 3.35
248 249 0.250858 CACAGACATGGGGTTGCTCA 60.251 55.000 0.00 0.00 0.00 4.26
249 250 1.589716 GCACAGACATGGGGTTGCTC 61.590 60.000 0.00 0.00 0.00 4.26
250 251 1.604593 GCACAGACATGGGGTTGCT 60.605 57.895 0.00 0.00 0.00 3.91
251 252 1.604593 AGCACAGACATGGGGTTGC 60.605 57.895 0.00 0.31 37.20 4.17
252 253 1.870055 GCAGCACAGACATGGGGTTG 61.870 60.000 0.00 0.00 38.92 3.77
253 254 1.604593 GCAGCACAGACATGGGGTT 60.605 57.895 0.00 0.00 38.92 4.11
254 255 2.034687 GCAGCACAGACATGGGGT 59.965 61.111 0.00 0.00 42.67 4.95
255 256 1.748122 GAGCAGCACAGACATGGGG 60.748 63.158 0.00 0.00 0.00 4.96
256 257 1.748122 GGAGCAGCACAGACATGGG 60.748 63.158 0.00 0.00 0.00 4.00
257 258 1.025113 CAGGAGCAGCACAGACATGG 61.025 60.000 0.00 0.00 0.00 3.66
258 259 1.025113 CCAGGAGCAGCACAGACATG 61.025 60.000 0.00 0.00 0.00 3.21
259 260 1.298993 CCAGGAGCAGCACAGACAT 59.701 57.895 0.00 0.00 0.00 3.06
260 261 2.745698 CCAGGAGCAGCACAGACA 59.254 61.111 0.00 0.00 0.00 3.41
261 262 2.745492 GCCAGGAGCAGCACAGAC 60.745 66.667 0.00 0.00 42.97 3.51
270 271 3.397613 ATGGAAGCGAGCCAGGAGC 62.398 63.158 0.00 0.00 39.11 4.70
271 272 1.523258 CATGGAAGCGAGCCAGGAG 60.523 63.158 0.00 0.00 39.44 3.69
272 273 2.586245 CATGGAAGCGAGCCAGGA 59.414 61.111 0.00 0.00 39.44 3.86
273 274 3.207669 GCATGGAAGCGAGCCAGG 61.208 66.667 0.00 3.37 39.11 4.45
274 275 3.207669 GGCATGGAAGCGAGCCAG 61.208 66.667 0.00 0.00 46.26 4.85
277 278 2.476320 GGAAGGCATGGAAGCGAGC 61.476 63.158 0.00 0.00 34.64 5.03
278 279 1.094073 CAGGAAGGCATGGAAGCGAG 61.094 60.000 0.00 0.00 34.64 5.03
279 280 1.078214 CAGGAAGGCATGGAAGCGA 60.078 57.895 0.00 0.00 34.64 4.93
280 281 1.377725 ACAGGAAGGCATGGAAGCG 60.378 57.895 0.00 0.00 34.64 4.68
281 282 0.610232 ACACAGGAAGGCATGGAAGC 60.610 55.000 0.00 0.00 0.00 3.86
282 283 2.290260 TGTACACAGGAAGGCATGGAAG 60.290 50.000 0.00 0.00 0.00 3.46
283 284 1.702401 TGTACACAGGAAGGCATGGAA 59.298 47.619 0.00 0.00 0.00 3.53
284 285 1.357137 TGTACACAGGAAGGCATGGA 58.643 50.000 0.00 0.00 0.00 3.41
285 286 2.019249 CATGTACACAGGAAGGCATGG 58.981 52.381 0.00 0.00 32.56 3.66
286 287 2.019249 CCATGTACACAGGAAGGCATG 58.981 52.381 10.01 0.00 35.02 4.06
287 288 1.683011 GCCATGTACACAGGAAGGCAT 60.683 52.381 17.94 0.00 40.29 4.40
288 289 0.322456 GCCATGTACACAGGAAGGCA 60.322 55.000 17.94 0.00 40.29 4.75
289 290 0.035056 AGCCATGTACACAGGAAGGC 60.035 55.000 17.94 14.29 40.85 4.35
290 291 2.496899 AAGCCATGTACACAGGAAGG 57.503 50.000 17.94 6.23 0.00 3.46
291 292 2.939103 GCTAAGCCATGTACACAGGAAG 59.061 50.000 17.94 12.37 0.00 3.46
292 293 2.676750 CGCTAAGCCATGTACACAGGAA 60.677 50.000 17.94 4.02 0.00 3.36
293 294 1.134818 CGCTAAGCCATGTACACAGGA 60.135 52.381 17.94 0.00 0.00 3.86
294 295 1.134818 TCGCTAAGCCATGTACACAGG 60.135 52.381 11.02 11.02 0.00 4.00
295 296 2.196749 CTCGCTAAGCCATGTACACAG 58.803 52.381 0.00 0.00 0.00 3.66
296 297 1.739035 GCTCGCTAAGCCATGTACACA 60.739 52.381 0.00 0.00 45.92 3.72
297 298 0.931005 GCTCGCTAAGCCATGTACAC 59.069 55.000 0.00 0.00 45.92 2.90
298 299 3.362581 GCTCGCTAAGCCATGTACA 57.637 52.632 0.00 0.00 45.92 2.90
307 308 3.181475 TGGGATTACAAGAGCTCGCTAAG 60.181 47.826 8.37 0.28 0.00 2.18
308 309 2.764010 TGGGATTACAAGAGCTCGCTAA 59.236 45.455 8.37 5.72 0.00 3.09
309 310 2.384828 TGGGATTACAAGAGCTCGCTA 58.615 47.619 8.37 0.00 0.00 4.26
310 311 1.195115 TGGGATTACAAGAGCTCGCT 58.805 50.000 8.37 0.00 0.00 4.93
311 312 1.869767 CATGGGATTACAAGAGCTCGC 59.130 52.381 8.37 0.00 0.00 5.03
312 313 1.869767 GCATGGGATTACAAGAGCTCG 59.130 52.381 8.37 0.00 0.00 5.03
313 314 2.877168 CAGCATGGGATTACAAGAGCTC 59.123 50.000 5.27 5.27 0.00 4.09
314 315 2.240667 ACAGCATGGGATTACAAGAGCT 59.759 45.455 0.00 0.00 43.62 4.09
315 316 2.648059 ACAGCATGGGATTACAAGAGC 58.352 47.619 0.00 0.00 43.62 4.09
316 317 4.769688 TGTACAGCATGGGATTACAAGAG 58.230 43.478 0.00 0.00 43.62 2.85
317 318 4.835284 TGTACAGCATGGGATTACAAGA 57.165 40.909 0.00 0.00 43.62 3.02
318 319 5.415701 AGTTTGTACAGCATGGGATTACAAG 59.584 40.000 0.00 0.00 43.62 3.16
319 320 5.321102 AGTTTGTACAGCATGGGATTACAA 58.679 37.500 0.00 0.00 43.62 2.41
320 321 4.917385 AGTTTGTACAGCATGGGATTACA 58.083 39.130 0.00 0.00 43.62 2.41
321 322 5.186198 AGAGTTTGTACAGCATGGGATTAC 58.814 41.667 0.00 0.00 43.62 1.89
322 323 5.435686 AGAGTTTGTACAGCATGGGATTA 57.564 39.130 0.00 0.00 43.62 1.75
323 324 4.307032 AGAGTTTGTACAGCATGGGATT 57.693 40.909 0.00 0.00 43.62 3.01
324 325 4.018960 AGAAGAGTTTGTACAGCATGGGAT 60.019 41.667 0.00 0.00 43.62 3.85
325 326 3.327757 AGAAGAGTTTGTACAGCATGGGA 59.672 43.478 0.00 0.00 43.62 4.37
326 327 3.679389 AGAAGAGTTTGTACAGCATGGG 58.321 45.455 0.00 0.00 43.62 4.00
327 328 3.686726 GGAGAAGAGTTTGTACAGCATGG 59.313 47.826 0.00 0.00 43.62 3.66
328 329 4.573900 AGGAGAAGAGTTTGTACAGCATG 58.426 43.478 0.00 0.00 46.00 4.06
329 330 4.899352 AGGAGAAGAGTTTGTACAGCAT 57.101 40.909 0.00 0.00 0.00 3.79
330 331 5.480422 TGATAGGAGAAGAGTTTGTACAGCA 59.520 40.000 0.00 0.00 0.00 4.41
331 332 5.967088 TGATAGGAGAAGAGTTTGTACAGC 58.033 41.667 0.00 0.00 0.00 4.40
332 333 8.253810 TCATTGATAGGAGAAGAGTTTGTACAG 58.746 37.037 0.00 0.00 0.00 2.74
333 334 8.134202 TCATTGATAGGAGAAGAGTTTGTACA 57.866 34.615 0.00 0.00 0.00 2.90
334 335 9.436957 TTTCATTGATAGGAGAAGAGTTTGTAC 57.563 33.333 0.00 0.00 0.00 2.90
336 337 8.924511 TTTTCATTGATAGGAGAAGAGTTTGT 57.075 30.769 0.00 0.00 0.00 2.83
337 338 9.224267 TCTTTTCATTGATAGGAGAAGAGTTTG 57.776 33.333 0.00 0.00 32.45 2.93
338 339 9.972106 ATCTTTTCATTGATAGGAGAAGAGTTT 57.028 29.630 0.00 0.00 38.27 2.66
341 342 9.190858 CGTATCTTTTCATTGATAGGAGAAGAG 57.809 37.037 0.00 0.00 38.27 2.85
342 343 7.653713 GCGTATCTTTTCATTGATAGGAGAAGA 59.346 37.037 0.00 0.00 38.91 2.87
343 344 7.439356 TGCGTATCTTTTCATTGATAGGAGAAG 59.561 37.037 0.00 0.00 34.73 2.85
344 345 7.224753 GTGCGTATCTTTTCATTGATAGGAGAA 59.775 37.037 0.00 0.00 34.73 2.87
345 346 6.701841 GTGCGTATCTTTTCATTGATAGGAGA 59.298 38.462 0.00 0.00 34.73 3.71
346 347 6.073548 GGTGCGTATCTTTTCATTGATAGGAG 60.074 42.308 0.00 0.00 34.73 3.69
347 348 5.758296 GGTGCGTATCTTTTCATTGATAGGA 59.242 40.000 0.00 0.00 34.73 2.94
348 349 5.049405 GGGTGCGTATCTTTTCATTGATAGG 60.049 44.000 0.00 0.00 35.44 2.57
349 350 5.760253 AGGGTGCGTATCTTTTCATTGATAG 59.240 40.000 0.00 0.00 0.00 2.08
350 351 5.680619 AGGGTGCGTATCTTTTCATTGATA 58.319 37.500 0.00 0.00 0.00 2.15
351 352 4.526970 AGGGTGCGTATCTTTTCATTGAT 58.473 39.130 0.00 0.00 0.00 2.57
352 353 3.938963 GAGGGTGCGTATCTTTTCATTGA 59.061 43.478 0.00 0.00 0.00 2.57
353 354 3.941483 AGAGGGTGCGTATCTTTTCATTG 59.059 43.478 0.00 0.00 0.00 2.82
354 355 4.222124 AGAGGGTGCGTATCTTTTCATT 57.778 40.909 0.00 0.00 0.00 2.57
355 356 3.914426 AGAGGGTGCGTATCTTTTCAT 57.086 42.857 0.00 0.00 0.00 2.57
356 357 3.428452 CGTAGAGGGTGCGTATCTTTTCA 60.428 47.826 0.00 0.00 0.00 2.69
357 358 3.114065 CGTAGAGGGTGCGTATCTTTTC 58.886 50.000 0.00 0.00 0.00 2.29
358 359 2.494870 ACGTAGAGGGTGCGTATCTTTT 59.505 45.455 0.00 0.00 46.63 2.27
359 360 2.097825 ACGTAGAGGGTGCGTATCTTT 58.902 47.619 0.00 0.00 46.63 2.52
360 361 1.760192 ACGTAGAGGGTGCGTATCTT 58.240 50.000 0.00 0.00 46.63 2.40
361 362 2.627515 TACGTAGAGGGTGCGTATCT 57.372 50.000 0.00 0.00 46.63 1.98
366 367 3.159446 CGAATACGTAGAGGGTGCG 57.841 57.895 0.08 0.00 40.63 5.34
420 421 0.107643 GCTGGGAAGAGGATGGCTAC 59.892 60.000 0.00 0.00 0.00 3.58
422 423 1.307691 AGCTGGGAAGAGGATGGCT 60.308 57.895 0.00 0.00 0.00 4.75
423 424 1.153005 CAGCTGGGAAGAGGATGGC 60.153 63.158 5.57 0.00 0.00 4.40
424 425 0.179936 GTCAGCTGGGAAGAGGATGG 59.820 60.000 15.13 0.00 0.00 3.51
427 428 0.178921 AGTGTCAGCTGGGAAGAGGA 60.179 55.000 15.13 0.00 0.00 3.71
444 445 4.801330 TCGGTGATGTTATCTCACAAGT 57.199 40.909 5.87 0.00 43.85 3.16
499 502 6.833041 TCACCAAATTTACAGTCTTGAGGTA 58.167 36.000 0.00 0.00 0.00 3.08
772 775 3.621892 GAGGCAAAGCAGGCAAGCG 62.622 63.158 0.00 0.00 40.15 4.68
832 835 1.990060 CCCCTCCTCCTCGAAGCAA 60.990 63.158 0.00 0.00 0.00 3.91
871 874 3.879682 CATGCGGTCATGCCACGG 61.880 66.667 6.92 0.00 43.00 4.94
1271 1440 2.688666 ATTCGAGCAGCCCCTGGA 60.689 61.111 0.00 0.00 31.21 3.86
1286 1455 9.444600 AAAATGCAGAGCAGATAAAAATTCATT 57.555 25.926 0.00 0.00 43.65 2.57
1306 1475 9.694520 GAAGAAGAAAAAGAAAGACAAAAATGC 57.305 29.630 0.00 0.00 0.00 3.56
1756 1981 1.474143 GGACCAGATCTACTGCAAGCC 60.474 57.143 0.00 0.00 44.52 4.35
1757 1982 1.208052 TGGACCAGATCTACTGCAAGC 59.792 52.381 0.00 0.00 44.52 4.01
2014 2638 2.036992 TCAATTTTGCCAGGCGTTGAAT 59.963 40.909 7.03 1.32 0.00 2.57
2660 3427 6.471146 AGCAGAGTTAAGTCTCATTGATTGT 58.529 36.000 9.98 0.00 36.97 2.71
2729 3516 4.575885 TGACTTAACAGGGTAATGACAGC 58.424 43.478 0.00 0.00 0.00 4.40
3017 3855 2.784347 AGAAAAGGGAGGCGAGAAAAG 58.216 47.619 0.00 0.00 0.00 2.27
3448 4422 6.513806 TGGGATGATTAACATGTCAGTTTG 57.486 37.500 0.00 0.00 39.56 2.93
3510 4485 1.972872 ACCAGAAAGACTGTGCCAAG 58.027 50.000 0.00 0.00 44.40 3.61
3512 4487 1.476833 GGAACCAGAAAGACTGTGCCA 60.477 52.381 0.00 0.00 44.40 4.92
3513 4488 1.239347 GGAACCAGAAAGACTGTGCC 58.761 55.000 0.00 0.00 44.40 5.01
3607 4780 4.439305 GCAGAAGGAATGCATAACAACA 57.561 40.909 0.00 0.00 43.31 3.33
3728 4901 9.607285 GTTTACTCCAACACATAAGTACAAATG 57.393 33.333 0.00 0.55 0.00 2.32
3760 4933 7.598869 GGTTAGCAAAATTTCTTTCCTAACCAG 59.401 37.037 23.32 0.00 45.33 4.00
4075 5265 0.595095 CAAAGTCAGACAGCTTGGCC 59.405 55.000 2.66 0.00 0.00 5.36
4162 5352 3.079578 CACATATTCAGGGGCAGCATAG 58.920 50.000 0.00 0.00 0.00 2.23
4298 5488 4.381411 TGTCGAACAAATGATGTGTGGTA 58.619 39.130 0.00 0.00 42.99 3.25
4314 5504 6.715264 TCTGCTAATGATACTCCTATGTCGAA 59.285 38.462 0.00 0.00 0.00 3.71
4359 5549 6.364568 TGCTCATATTAGGCAGATACATGT 57.635 37.500 2.69 2.69 0.00 3.21
4397 5587 2.575694 AGCTGTAGACATCGCTTCTG 57.424 50.000 0.00 0.00 0.00 3.02
4781 5971 3.822192 GGGGCGCATTTCGGGTTC 61.822 66.667 10.83 0.00 38.94 3.62
4853 6043 2.292828 TTTCCTTTTCCTCCAGGCAG 57.707 50.000 0.00 0.00 34.44 4.85
5058 7496 1.901464 TTTTCGGCAAGGGCTCACC 60.901 57.895 0.00 0.00 40.87 4.02
5155 7593 4.644685 TCCCTGGAAAGAAAGTTTCACTTG 59.355 41.667 17.65 3.09 38.66 3.16
5295 7746 3.135994 GTGCTTTAGGTTTCCGACTCAA 58.864 45.455 0.00 0.00 0.00 3.02
5321 7772 0.914417 GGTGGAGATGAGGGGTTGGA 60.914 60.000 0.00 0.00 0.00 3.53
5558 8013 2.505819 ACTCCAAATACGAAGCCTCCAT 59.494 45.455 0.00 0.00 0.00 3.41
5596 8052 1.594293 CTCGTTGTCGCCACAAGGT 60.594 57.895 14.97 0.00 43.42 3.50
5599 8055 0.250124 AATCCTCGTTGTCGCCACAA 60.250 50.000 0.00 0.00 40.40 3.33
5655 8111 0.313987 GAAGCCCCTTGAAACAACGG 59.686 55.000 0.00 0.00 0.00 4.44
5685 10103 6.612247 TCACGTTACATTGAGAAACAACAT 57.388 33.333 0.00 0.00 41.52 2.71
5697 10115 3.928727 TCGACTCCTTCACGTTACATT 57.071 42.857 0.00 0.00 0.00 2.71
5702 10120 2.159142 ACAACTTCGACTCCTTCACGTT 60.159 45.455 0.00 0.00 0.00 3.99
5704 10122 1.787155 CACAACTTCGACTCCTTCACG 59.213 52.381 0.00 0.00 0.00 4.35
5706 10124 2.821546 CACACAACTTCGACTCCTTCA 58.178 47.619 0.00 0.00 0.00 3.02
5711 10129 3.741344 ACATAAGCACACAACTTCGACTC 59.259 43.478 0.00 0.00 0.00 3.36
5729 10147 5.104569 TGGTCATTCTTGCCATAGTGACATA 60.105 40.000 9.75 0.00 38.10 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.