Multiple sequence alignment - TraesCS4D01G121600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G121600 chr4D 100.000 5132 0 0 1 5132 102875850 102870719 0.000000e+00 9478.0
1 TraesCS4D01G121600 chr4D 90.133 375 19 11 2885 3244 145587817 145587446 6.010000e-129 472.0
2 TraesCS4D01G121600 chr4D 86.802 394 17 9 2879 3238 6688829 6689221 1.720000e-109 407.0
3 TraesCS4D01G121600 chr4A 93.442 2272 107 14 1 2247 472193283 472195537 0.000000e+00 3332.0
4 TraesCS4D01G121600 chr4A 95.895 1291 50 2 3236 4523 472196859 472198149 0.000000e+00 2087.0
5 TraesCS4D01G121600 chr4A 86.998 623 51 10 4515 5132 472198427 472199024 0.000000e+00 675.0
6 TraesCS4D01G121600 chr4B 95.668 1616 63 5 638 2246 147331420 147329805 0.000000e+00 2590.0
7 TraesCS4D01G121600 chr4B 95.970 1191 33 7 3236 4426 147329142 147327967 0.000000e+00 1919.0
8 TraesCS4D01G121600 chr4B 88.174 668 44 13 1 650 147338185 147337535 0.000000e+00 763.0
9 TraesCS4D01G121600 chr4B 88.806 402 35 3 2415 2807 147329563 147329163 7.730000e-133 484.0
10 TraesCS4D01G121600 chr4B 87.855 387 19 12 2878 3238 611556085 611555701 3.670000e-116 429.0
11 TraesCS4D01G121600 chr4B 86.170 376 30 11 2879 3240 47019491 47019858 2.240000e-103 387.0
12 TraesCS4D01G121600 chr4B 87.500 312 18 8 4560 4871 147325774 147325484 1.770000e-89 340.0
13 TraesCS4D01G121600 chr4B 95.588 136 5 1 4426 4561 147326164 147326030 3.110000e-52 217.0
14 TraesCS4D01G121600 chr4B 90.991 111 10 0 2243 2353 10746588 10746478 3.200000e-32 150.0
15 TraesCS4D01G121600 chr5D 90.078 383 13 9 2878 3236 505020389 505020008 1.670000e-129 473.0
16 TraesCS4D01G121600 chr5D 89.870 385 13 9 2879 3238 559666687 559666304 6.010000e-129 472.0
17 TraesCS4D01G121600 chr5D 87.692 390 12 16 2882 3236 544784751 544785139 6.140000e-114 422.0
18 TraesCS4D01G121600 chr5D 87.436 390 13 14 2885 3239 434574184 434573796 2.860000e-112 416.0
19 TraesCS4D01G121600 chr6D 90.078 383 11 13 2879 3236 355866881 355867261 6.010000e-129 472.0
20 TraesCS4D01G121600 chr6D 88.125 320 12 15 2885 3179 351122899 351122581 1.760000e-94 357.0
21 TraesCS4D01G121600 chr6D 84.069 408 17 16 2879 3240 113259249 113258844 2.940000e-92 350.0
22 TraesCS4D01G121600 chr6D 90.226 133 12 1 2245 2377 405486911 405486780 6.830000e-39 172.0
23 TraesCS4D01G121600 chr3D 89.062 384 17 7 2879 3238 570303337 570302955 2.180000e-123 453.0
24 TraesCS4D01G121600 chr3D 89.385 358 12 7 2876 3208 507759533 507759177 1.320000e-115 427.0
25 TraesCS4D01G121600 chr3D 89.118 340 12 11 2882 3196 508410766 508411105 2.880000e-107 399.0
26 TraesCS4D01G121600 chr3D 84.956 113 17 0 3563 3675 185236703 185236815 1.170000e-21 115.0
27 TraesCS4D01G121600 chr7D 89.326 356 12 12 2878 3207 25200460 25200105 1.710000e-114 424.0
28 TraesCS4D01G121600 chr7D 84.938 405 14 15 2879 3238 162832632 162832230 2.920000e-97 366.0
29 TraesCS4D01G121600 chr7D 89.231 130 14 0 2245 2374 327489904 327490033 4.110000e-36 163.0
30 TraesCS4D01G121600 chr7D 89.147 129 14 0 2246 2374 63641836 63641964 1.480000e-35 161.0
31 TraesCS4D01G121600 chr7D 85.926 135 14 4 2245 2377 173715633 173715502 6.930000e-29 139.0
32 TraesCS4D01G121600 chr2D 86.935 398 16 13 2880 3242 612214847 612214451 1.030000e-111 414.0
33 TraesCS4D01G121600 chr3A 85.354 396 20 17 2880 3239 655893693 655893300 4.850000e-100 375.0
34 TraesCS4D01G121600 chr3A 88.050 318 15 9 2885 3179 16950465 16950148 6.320000e-94 355.0
35 TraesCS4D01G121600 chr3A 83.444 151 23 2 1632 1781 244351925 244352074 6.930000e-29 139.0
36 TraesCS4D01G121600 chr3A 83.333 114 17 2 3563 3675 244352985 244353097 2.530000e-18 104.0
37 TraesCS4D01G121600 chr1D 90.698 129 12 0 2246 2374 282963698 282963826 6.830000e-39 172.0
38 TraesCS4D01G121600 chr1D 85.821 134 14 4 2246 2377 344130952 344130822 2.490000e-28 137.0
39 TraesCS4D01G121600 chr7B 85.401 137 18 2 2242 2377 10817969 10817834 1.930000e-29 141.0
40 TraesCS4D01G121600 chr7B 85.714 133 17 2 2246 2377 210364864 210364733 6.930000e-29 139.0
41 TraesCS4D01G121600 chr3B 83.660 153 19 6 1632 1781 264009158 264009307 6.930000e-29 139.0
42 TraesCS4D01G121600 chr3B 84.071 113 18 0 3563 3675 264009562 264009674 5.430000e-20 110.0
43 TraesCS4D01G121600 chr3B 87.209 86 6 5 2078 2163 547153674 547153754 5.470000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G121600 chr4D 102870719 102875850 5131 True 9478.000000 9478 100.000000 1 5132 1 chr4D.!!$R1 5131
1 TraesCS4D01G121600 chr4A 472193283 472199024 5741 False 2031.333333 3332 92.111667 1 5132 3 chr4A.!!$F1 5131
2 TraesCS4D01G121600 chr4B 147325484 147331420 5936 True 1110.000000 2590 92.706400 638 4871 5 chr4B.!!$R4 4233
3 TraesCS4D01G121600 chr4B 147337535 147338185 650 True 763.000000 763 88.174000 1 650 1 chr4B.!!$R2 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.668706 CAGTGACCGACAGAGCAAGG 60.669 60.0 0.0 0.0 0.0 3.61 F
1570 1590 0.261991 ATCCCGAAGACCTCCAGCTA 59.738 55.0 0.0 0.0 0.0 3.32 F
2381 2411 0.107654 GTCCCGACCCAATCTCCAAG 60.108 60.0 0.0 0.0 0.0 3.61 F
2918 3925 0.034756 GGCACCCCCAAAAACATCAC 59.965 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1834 0.449388 GCATGTGTGTGCCTTAGAGC 59.551 55.0 0.0 0.0 39.18 4.09 R
2899 3906 0.034756 GTGATGTTTTTGGGGGTGCC 59.965 55.0 0.0 0.0 0.00 5.01 R
3211 4218 0.105246 ATCTCCACTAGCCTCCCCAG 60.105 60.0 0.0 0.0 0.00 4.45 R
4847 7982 0.250727 GTAGCAAAGGACAGGTGGCA 60.251 55.0 0.0 0.0 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.266554 CCGAGAGAACATGAGCAAGTC 58.733 52.381 0.00 0.00 0.00 3.01
53 54 0.668706 CAGTGACCGACAGAGCAAGG 60.669 60.000 0.00 0.00 0.00 3.61
68 69 5.300286 CAGAGCAAGGGGTATATTTGGAAAG 59.700 44.000 0.00 0.00 0.00 2.62
233 234 3.495806 GGTCATAGGATCCTCTTGCCAAG 60.496 52.174 20.22 0.00 0.00 3.61
382 385 8.622948 AGGTGTTTTCTCAGTTCCTATAAAAG 57.377 34.615 0.00 0.00 0.00 2.27
395 398 7.728532 AGTTCCTATAAAAGCTTCCCTCAAAAA 59.271 33.333 0.00 0.00 0.00 1.94
460 480 4.830765 GCGGCATGGCAGTCGGTA 62.831 66.667 20.37 0.00 0.00 4.02
636 656 3.495377 CCTGAACAACGATTACCGAAACA 59.505 43.478 0.00 0.00 41.76 2.83
994 1014 4.038521 CGGAGATCACATGCGCAT 57.961 55.556 19.28 19.28 0.00 4.73
1162 1182 1.606601 GGTGTTCCAAAGGGAGGGC 60.607 63.158 0.00 0.00 46.01 5.19
1177 1197 1.823899 GGGCGGCCTCCATTAGTTG 60.824 63.158 22.87 0.00 0.00 3.16
1255 1275 0.824109 CCTGACGCCAACTCCATCTA 59.176 55.000 0.00 0.00 0.00 1.98
1429 1449 7.466455 CGATGTCCATTGATTCCTTGAGTAAAG 60.466 40.741 0.00 0.00 35.47 1.85
1446 1466 7.812648 TGAGTAAAGTTATTAAGCAACGCAAT 58.187 30.769 0.00 0.00 0.00 3.56
1519 1539 2.043852 ACGTCAGGGCGAGATCCT 60.044 61.111 0.00 0.00 35.59 3.24
1570 1590 0.261991 ATCCCGAAGACCTCCAGCTA 59.738 55.000 0.00 0.00 0.00 3.32
1577 1597 2.037367 ACCTCCAGCTAGACGGCA 59.963 61.111 0.00 0.00 34.17 5.69
1814 1834 3.368539 CGACCTCGTAGCAGCTAGTATAG 59.631 52.174 1.02 0.00 36.77 1.31
1864 1891 8.364129 TCATAAGTTGCCTGAATTTTGTTTTC 57.636 30.769 0.00 0.00 0.00 2.29
1933 1963 4.020128 TCCTTGTTTCTTCTTCCTCTAGCC 60.020 45.833 0.00 0.00 0.00 3.93
1980 2010 1.067354 TCGCGTCCTTACCTTTCCTTC 60.067 52.381 5.77 0.00 0.00 3.46
1989 2019 1.450312 CCTTTCCTTCAGCGGCGAT 60.450 57.895 12.98 0.00 0.00 4.58
2017 2047 4.990910 ACTGCACCCTCCCTGCCT 62.991 66.667 0.00 0.00 33.36 4.75
2112 2142 4.370364 TCTTCACAAACTTGGTCAAAGC 57.630 40.909 0.00 0.00 39.76 3.51
2135 2165 9.750125 AAGCTTATGAGGTTTGACTTTAAAAAG 57.250 29.630 0.00 0.90 40.54 2.27
2170 2200 9.579768 GATGCACTACATTATAGAACATAGAGG 57.420 37.037 0.00 0.00 39.84 3.69
2243 2273 2.470257 CGACGTAATCCAATTAGGCGAC 59.530 50.000 0.00 0.00 34.90 5.19
2247 2277 4.116961 CGTAATCCAATTAGGCGACAAGA 58.883 43.478 0.00 0.00 37.29 3.02
2248 2278 4.209288 CGTAATCCAATTAGGCGACAAGAG 59.791 45.833 0.00 0.00 37.29 2.85
2249 2279 2.024176 TCCAATTAGGCGACAAGAGC 57.976 50.000 0.00 0.00 37.29 4.09
2250 2280 1.277842 TCCAATTAGGCGACAAGAGCA 59.722 47.619 0.00 0.00 37.29 4.26
2251 2281 2.083774 CCAATTAGGCGACAAGAGCAA 58.916 47.619 0.00 0.00 36.08 3.91
2252 2282 2.159517 CCAATTAGGCGACAAGAGCAAC 60.160 50.000 0.00 0.00 36.08 4.17
2254 2284 2.543777 TTAGGCGACAAGAGCAACTT 57.456 45.000 0.00 0.00 39.70 2.66
2255 2285 2.080286 TAGGCGACAAGAGCAACTTC 57.920 50.000 0.00 0.00 36.61 3.01
2257 2287 0.944386 GGCGACAAGAGCAACTTCAA 59.056 50.000 0.00 0.00 36.61 2.69
2259 2289 2.578495 GCGACAAGAGCAACTTCAATG 58.422 47.619 0.00 0.00 36.61 2.82
2260 2290 2.666619 GCGACAAGAGCAACTTCAATGG 60.667 50.000 0.00 0.00 36.61 3.16
2262 2292 2.229784 GACAAGAGCAACTTCAATGGGG 59.770 50.000 0.00 0.00 36.61 4.96
2265 2295 0.960364 GAGCAACTTCAATGGGGCGA 60.960 55.000 0.00 0.00 0.00 5.54
2266 2296 1.212751 GCAACTTCAATGGGGCGAC 59.787 57.895 0.00 0.00 0.00 5.19
2279 2309 1.969589 GGCGACCCATTTTGTCCGT 60.970 57.895 0.00 0.00 0.00 4.69
2280 2310 1.520600 GGCGACCCATTTTGTCCGTT 61.521 55.000 0.00 0.00 0.00 4.44
2281 2311 0.312729 GCGACCCATTTTGTCCGTTT 59.687 50.000 0.00 0.00 0.00 3.60
2282 2312 1.928595 GCGACCCATTTTGTCCGTTTG 60.929 52.381 0.00 0.00 0.00 2.93
2283 2313 1.335506 CGACCCATTTTGTCCGTTTGG 60.336 52.381 0.00 0.00 0.00 3.28
2284 2314 3.904586 CCCATTTTGTCCGTTTGGG 57.095 52.632 0.00 0.00 41.02 4.12
2285 2315 1.044611 CCCATTTTGTCCGTTTGGGT 58.955 50.000 0.00 0.00 41.78 4.51
2286 2316 1.000394 CCCATTTTGTCCGTTTGGGTC 60.000 52.381 0.00 0.00 41.78 4.46
2287 2317 1.683917 CCATTTTGTCCGTTTGGGTCA 59.316 47.619 0.00 0.00 37.00 4.02
2288 2318 2.101582 CCATTTTGTCCGTTTGGGTCAA 59.898 45.455 0.00 0.00 41.22 3.18
2289 2319 2.943449 TTTTGTCCGTTTGGGTCAAC 57.057 45.000 0.00 0.00 42.37 3.18
2290 2320 1.104630 TTTGTCCGTTTGGGTCAACC 58.895 50.000 0.00 0.00 42.37 3.77
2291 2321 1.096386 TTGTCCGTTTGGGTCAACCG 61.096 55.000 0.00 0.00 44.64 4.44
2305 2335 1.746220 TCAACCGGACACAAAAGTTGG 59.254 47.619 9.46 0.00 38.63 3.77
2306 2336 1.474879 CAACCGGACACAAAAGTTGGT 59.525 47.619 9.46 0.00 35.34 3.67
2308 2338 0.666374 CCGGACACAAAAGTTGGTCC 59.334 55.000 0.00 14.00 42.55 4.46
2309 2339 1.384525 CGGACACAAAAGTTGGTCCA 58.615 50.000 19.61 0.00 44.41 4.02
2310 2340 1.746220 CGGACACAAAAGTTGGTCCAA 59.254 47.619 19.61 0.00 44.41 3.53
2311 2341 2.478879 CGGACACAAAAGTTGGTCCAAC 60.479 50.000 24.86 24.86 44.41 3.77
2334 2364 4.160635 GACCCAAATGGACGCGCG 62.161 66.667 30.96 30.96 37.39 6.86
2336 2366 4.459331 CCCAAATGGACGCGCGTG 62.459 66.667 42.90 24.37 37.39 5.34
2338 2368 2.202171 CAAATGGACGCGCGTGTC 60.202 61.111 42.90 37.72 38.17 3.67
2350 2380 2.279517 CGTGTCCGCCTGCTATCC 60.280 66.667 0.00 0.00 0.00 2.59
2351 2381 2.279517 GTGTCCGCCTGCTATCCG 60.280 66.667 0.00 0.00 0.00 4.18
2352 2382 2.758327 TGTCCGCCTGCTATCCGT 60.758 61.111 0.00 0.00 0.00 4.69
2353 2383 2.355986 TGTCCGCCTGCTATCCGTT 61.356 57.895 0.00 0.00 0.00 4.44
2354 2384 1.153429 GTCCGCCTGCTATCCGTTT 60.153 57.895 0.00 0.00 0.00 3.60
2355 2385 1.153449 TCCGCCTGCTATCCGTTTG 60.153 57.895 0.00 0.00 0.00 2.93
2356 2386 1.449601 CCGCCTGCTATCCGTTTGT 60.450 57.895 0.00 0.00 0.00 2.83
2357 2387 1.429148 CCGCCTGCTATCCGTTTGTC 61.429 60.000 0.00 0.00 0.00 3.18
2361 2391 2.213499 CCTGCTATCCGTTTGTCATCC 58.787 52.381 0.00 0.00 0.00 3.51
2362 2392 1.860950 CTGCTATCCGTTTGTCATCCG 59.139 52.381 0.00 0.00 0.00 4.18
2363 2393 1.206132 TGCTATCCGTTTGTCATCCGT 59.794 47.619 0.00 0.00 0.00 4.69
2364 2394 1.859080 GCTATCCGTTTGTCATCCGTC 59.141 52.381 0.00 0.00 0.00 4.79
2365 2395 2.470821 CTATCCGTTTGTCATCCGTCC 58.529 52.381 0.00 0.00 0.00 4.79
2366 2396 0.107848 ATCCGTTTGTCATCCGTCCC 60.108 55.000 0.00 0.00 0.00 4.46
2367 2397 2.098233 CCGTTTGTCATCCGTCCCG 61.098 63.158 0.00 0.00 0.00 5.14
2368 2398 1.080366 CGTTTGTCATCCGTCCCGA 60.080 57.895 0.00 0.00 0.00 5.14
2369 2399 1.349259 CGTTTGTCATCCGTCCCGAC 61.349 60.000 0.00 0.00 0.00 4.79
2370 2400 1.017701 GTTTGTCATCCGTCCCGACC 61.018 60.000 0.00 0.00 0.00 4.79
2371 2401 2.175035 TTTGTCATCCGTCCCGACCC 62.175 60.000 0.00 0.00 0.00 4.46
2374 2404 1.687840 TCATCCGTCCCGACCCAAT 60.688 57.895 0.00 0.00 0.00 3.16
2375 2405 1.227556 CATCCGTCCCGACCCAATC 60.228 63.158 0.00 0.00 0.00 2.67
2376 2406 1.382695 ATCCGTCCCGACCCAATCT 60.383 57.895 0.00 0.00 0.00 2.40
2377 2407 1.400530 ATCCGTCCCGACCCAATCTC 61.401 60.000 0.00 0.00 0.00 2.75
2380 2410 1.895020 CGTCCCGACCCAATCTCCAA 61.895 60.000 0.00 0.00 0.00 3.53
2381 2411 0.107654 GTCCCGACCCAATCTCCAAG 60.108 60.000 0.00 0.00 0.00 3.61
2383 2413 1.452108 CCGACCCAATCTCCAAGGC 60.452 63.158 0.00 0.00 0.00 4.35
2386 2416 1.177401 GACCCAATCTCCAAGGCAAC 58.823 55.000 0.00 0.00 0.00 4.17
2387 2417 0.482446 ACCCAATCTCCAAGGCAACA 59.518 50.000 0.00 0.00 41.41 3.33
2388 2418 0.890683 CCCAATCTCCAAGGCAACAC 59.109 55.000 0.00 0.00 41.41 3.32
2389 2419 0.890683 CCAATCTCCAAGGCAACACC 59.109 55.000 0.00 0.00 41.41 4.16
2391 2421 1.244019 AATCTCCAAGGCAACACCGC 61.244 55.000 0.00 0.00 46.52 5.68
2393 2423 1.003839 CTCCAAGGCAACACCGCTA 60.004 57.895 0.00 0.00 46.52 4.26
2396 2426 2.359975 AAGGCAACACCGCTAGCC 60.360 61.111 9.66 0.00 46.52 3.93
2398 2428 2.359975 GGCAACACCGCTAGCCTT 60.360 61.111 9.66 0.00 43.70 4.35
2404 2434 0.905357 ACACCGCTAGCCTTCATCTT 59.095 50.000 9.66 0.00 0.00 2.40
2405 2435 1.134670 ACACCGCTAGCCTTCATCTTC 60.135 52.381 9.66 0.00 0.00 2.87
2408 2438 1.539929 CCGCTAGCCTTCATCTTCCTG 60.540 57.143 9.66 0.00 0.00 3.86
2410 2440 1.863267 CTAGCCTTCATCTTCCTGCG 58.137 55.000 0.00 0.00 0.00 5.18
2411 2441 0.465705 TAGCCTTCATCTTCCTGCGG 59.534 55.000 0.00 0.00 0.00 5.69
2412 2442 2.476320 GCCTTCATCTTCCTGCGGC 61.476 63.158 0.00 0.00 0.00 6.53
2413 2443 2.176273 CCTTCATCTTCCTGCGGCG 61.176 63.158 0.51 0.51 0.00 6.46
2430 3427 4.980805 GGTGCCGCACTTCCGTCA 62.981 66.667 22.41 0.00 34.40 4.35
2454 3451 3.914312 TCGTCTCCATGAGTGTCTTTTC 58.086 45.455 0.00 0.00 0.00 2.29
2455 3452 2.996621 CGTCTCCATGAGTGTCTTTTCC 59.003 50.000 0.00 0.00 0.00 3.13
2504 3501 1.248486 TGAGGGGCTAGATCGAATCG 58.752 55.000 0.00 0.00 0.00 3.34
2530 3527 1.664873 TGTGTCGATCGGGACTAGAG 58.335 55.000 16.41 0.00 37.81 2.43
2535 3532 3.760151 TGTCGATCGGGACTAGAGAAAAA 59.240 43.478 16.41 0.00 37.81 1.94
2546 3543 6.807720 GGGACTAGAGAAAAACTTAGTTCGAG 59.192 42.308 0.00 0.00 0.00 4.04
2560 3557 2.165437 AGTTCGAGAGATTGAGGAGCAC 59.835 50.000 0.00 0.00 41.60 4.40
2565 3562 2.892425 GATTGAGGAGCACGCCCG 60.892 66.667 0.00 0.00 0.00 6.13
2566 3563 4.473520 ATTGAGGAGCACGCCCGG 62.474 66.667 0.00 0.00 0.00 5.73
2598 3595 4.484872 GGACCAGCTAACCGGGCC 62.485 72.222 6.32 0.00 45.47 5.80
2760 3766 6.347888 GCTGTTGCAAAAAGACTACCGTAATA 60.348 38.462 13.26 0.00 30.71 0.98
2774 3780 8.922058 ACTACCGTAATATTTTATCTATGCCG 57.078 34.615 0.00 0.00 0.00 5.69
2786 3792 1.837439 TCTATGCCGAATCAGGTTGGT 59.163 47.619 0.00 0.00 0.00 3.67
2788 3794 1.315257 ATGCCGAATCAGGTTGGTGC 61.315 55.000 0.00 0.00 0.00 5.01
2789 3795 1.675641 GCCGAATCAGGTTGGTGCT 60.676 57.895 0.00 0.00 0.00 4.40
2790 3796 1.926511 GCCGAATCAGGTTGGTGCTG 61.927 60.000 0.00 0.00 0.00 4.41
2791 3797 0.606401 CCGAATCAGGTTGGTGCTGT 60.606 55.000 0.00 0.00 0.00 4.40
2792 3798 1.238439 CGAATCAGGTTGGTGCTGTT 58.762 50.000 0.00 0.00 0.00 3.16
2793 3799 1.069022 CGAATCAGGTTGGTGCTGTTG 60.069 52.381 0.00 0.00 0.00 3.33
2794 3800 0.675633 AATCAGGTTGGTGCTGTTGC 59.324 50.000 0.00 0.00 40.20 4.17
2805 3811 1.367471 GCTGTTGCAAAAGGACCCC 59.633 57.895 18.35 0.00 39.41 4.95
2806 3812 1.115326 GCTGTTGCAAAAGGACCCCT 61.115 55.000 18.35 0.00 39.41 4.79
2807 3813 0.961753 CTGTTGCAAAAGGACCCCTC 59.038 55.000 8.93 0.00 30.89 4.30
2808 3814 0.555769 TGTTGCAAAAGGACCCCTCT 59.444 50.000 0.00 0.00 30.89 3.69
2809 3815 1.777878 TGTTGCAAAAGGACCCCTCTA 59.222 47.619 0.00 0.00 30.89 2.43
2810 3816 2.175931 TGTTGCAAAAGGACCCCTCTAA 59.824 45.455 0.00 0.00 30.89 2.10
2811 3817 3.181423 TGTTGCAAAAGGACCCCTCTAAT 60.181 43.478 0.00 0.00 30.89 1.73
2812 3818 3.825908 TGCAAAAGGACCCCTCTAATT 57.174 42.857 0.00 0.00 30.89 1.40
2813 3819 4.126520 TGCAAAAGGACCCCTCTAATTT 57.873 40.909 0.00 0.00 30.89 1.82
2814 3820 4.086457 TGCAAAAGGACCCCTCTAATTTC 58.914 43.478 0.00 0.00 30.89 2.17
2815 3821 3.447586 GCAAAAGGACCCCTCTAATTTCC 59.552 47.826 0.00 0.00 30.89 3.13
2816 3822 4.023980 CAAAAGGACCCCTCTAATTTCCC 58.976 47.826 0.00 0.00 30.89 3.97
2817 3823 1.908643 AGGACCCCTCTAATTTCCCC 58.091 55.000 0.00 0.00 0.00 4.81
2818 3824 0.851469 GGACCCCTCTAATTTCCCCC 59.149 60.000 0.00 0.00 0.00 5.40
2836 3842 4.494091 CCCCCATATATCACATCAGGTC 57.506 50.000 0.00 0.00 0.00 3.85
2837 3843 3.118629 CCCCCATATATCACATCAGGTCG 60.119 52.174 0.00 0.00 0.00 4.79
2838 3844 3.118629 CCCCATATATCACATCAGGTCGG 60.119 52.174 0.00 0.00 0.00 4.79
2839 3845 3.525537 CCATATATCACATCAGGTCGGC 58.474 50.000 0.00 0.00 0.00 5.54
2840 3846 3.055891 CCATATATCACATCAGGTCGGCA 60.056 47.826 0.00 0.00 0.00 5.69
2845 3851 0.729116 CACATCAGGTCGGCATTGTC 59.271 55.000 0.00 0.00 0.00 3.18
2847 3853 0.740868 CATCAGGTCGGCATTGTCGT 60.741 55.000 10.85 0.00 30.45 4.34
2864 3871 5.549742 TGTCGTAGAAAGACCCCTTTAAA 57.450 39.130 0.00 0.00 42.30 1.52
2888 3895 9.875691 AAAAATTAGTTGATTTCTTAGGGCATC 57.124 29.630 0.00 0.00 0.00 3.91
2889 3896 8.829373 AAATTAGTTGATTTCTTAGGGCATCT 57.171 30.769 0.00 0.00 0.00 2.90
2890 3897 8.829373 AATTAGTTGATTTCTTAGGGCATCTT 57.171 30.769 0.00 0.00 0.00 2.40
2891 3898 7.865706 TTAGTTGATTTCTTAGGGCATCTTC 57.134 36.000 0.00 0.00 0.00 2.87
2892 3899 5.819991 AGTTGATTTCTTAGGGCATCTTCA 58.180 37.500 0.00 0.00 0.00 3.02
2893 3900 5.884792 AGTTGATTTCTTAGGGCATCTTCAG 59.115 40.000 0.00 0.00 0.00 3.02
2894 3901 4.202441 TGATTTCTTAGGGCATCTTCAGC 58.798 43.478 0.00 0.00 0.00 4.26
2900 3907 3.190878 GGCATCTTCAGCCGTTGG 58.809 61.111 0.00 0.00 43.15 3.77
2915 3922 4.737346 TGGCACCCCCAAAAACAT 57.263 50.000 0.00 0.00 41.82 2.71
2916 3923 2.446512 TGGCACCCCCAAAAACATC 58.553 52.632 0.00 0.00 41.82 3.06
2917 3924 0.399091 TGGCACCCCCAAAAACATCA 60.399 50.000 0.00 0.00 41.82 3.07
2918 3925 0.034756 GGCACCCCCAAAAACATCAC 59.965 55.000 0.00 0.00 0.00 3.06
2919 3926 0.034756 GCACCCCCAAAAACATCACC 59.965 55.000 0.00 0.00 0.00 4.02
2920 3927 0.316841 CACCCCCAAAAACATCACCG 59.683 55.000 0.00 0.00 0.00 4.94
2921 3928 0.186386 ACCCCCAAAAACATCACCGA 59.814 50.000 0.00 0.00 0.00 4.69
2922 3929 1.333177 CCCCCAAAAACATCACCGAA 58.667 50.000 0.00 0.00 0.00 4.30
2923 3930 1.000394 CCCCCAAAAACATCACCGAAC 60.000 52.381 0.00 0.00 0.00 3.95
2924 3931 1.000394 CCCCAAAAACATCACCGAACC 60.000 52.381 0.00 0.00 0.00 3.62
2925 3932 1.683917 CCCAAAAACATCACCGAACCA 59.316 47.619 0.00 0.00 0.00 3.67
2926 3933 2.101582 CCCAAAAACATCACCGAACCAA 59.898 45.455 0.00 0.00 0.00 3.67
2927 3934 3.430929 CCCAAAAACATCACCGAACCAAA 60.431 43.478 0.00 0.00 0.00 3.28
2928 3935 4.184629 CCAAAAACATCACCGAACCAAAA 58.815 39.130 0.00 0.00 0.00 2.44
2929 3936 4.631813 CCAAAAACATCACCGAACCAAAAA 59.368 37.500 0.00 0.00 0.00 1.94
2946 3953 1.788229 AAAAGTTGGTGTCTTGGGGG 58.212 50.000 0.00 0.00 0.00 5.40
2947 3954 0.634465 AAAGTTGGTGTCTTGGGGGT 59.366 50.000 0.00 0.00 0.00 4.95
2948 3955 0.185175 AAGTTGGTGTCTTGGGGGTC 59.815 55.000 0.00 0.00 0.00 4.46
2949 3956 0.991355 AGTTGGTGTCTTGGGGGTCA 60.991 55.000 0.00 0.00 0.00 4.02
2950 3957 0.112412 GTTGGTGTCTTGGGGGTCAT 59.888 55.000 0.00 0.00 0.00 3.06
2951 3958 0.404040 TTGGTGTCTTGGGGGTCATC 59.596 55.000 0.00 0.00 0.00 2.92
2952 3959 1.303282 GGTGTCTTGGGGGTCATCC 59.697 63.158 0.00 0.00 0.00 3.51
2953 3960 1.078426 GTGTCTTGGGGGTCATCCG 60.078 63.158 0.00 0.00 36.01 4.18
2954 3961 2.297895 TGTCTTGGGGGTCATCCGG 61.298 63.158 0.00 0.00 36.01 5.14
2955 3962 3.407967 TCTTGGGGGTCATCCGGC 61.408 66.667 0.00 0.00 36.01 6.13
2956 3963 4.856801 CTTGGGGGTCATCCGGCG 62.857 72.222 0.00 0.00 36.01 6.46
2959 3966 4.104183 GGGGGTCATCCGGCGAAA 62.104 66.667 9.30 0.00 36.01 3.46
2960 3967 2.192175 GGGGTCATCCGGCGAAAT 59.808 61.111 9.30 0.00 36.01 2.17
2961 3968 1.448497 GGGGTCATCCGGCGAAATA 59.552 57.895 9.30 0.00 36.01 1.40
2962 3969 0.179040 GGGGTCATCCGGCGAAATAA 60.179 55.000 9.30 0.00 36.01 1.40
2963 3970 1.670791 GGGTCATCCGGCGAAATAAA 58.329 50.000 9.30 0.00 33.83 1.40
2964 3971 1.602377 GGGTCATCCGGCGAAATAAAG 59.398 52.381 9.30 0.00 33.83 1.85
2965 3972 2.557317 GGTCATCCGGCGAAATAAAGA 58.443 47.619 9.30 0.00 0.00 2.52
2966 3973 2.544267 GGTCATCCGGCGAAATAAAGAG 59.456 50.000 9.30 0.00 0.00 2.85
2967 3974 3.454375 GTCATCCGGCGAAATAAAGAGA 58.546 45.455 9.30 0.00 0.00 3.10
2968 3975 3.491267 GTCATCCGGCGAAATAAAGAGAG 59.509 47.826 9.30 0.00 0.00 3.20
2969 3976 1.935933 TCCGGCGAAATAAAGAGAGC 58.064 50.000 9.30 0.00 0.00 4.09
2970 3977 1.206132 TCCGGCGAAATAAAGAGAGCA 59.794 47.619 9.30 0.00 0.00 4.26
2971 3978 2.158957 TCCGGCGAAATAAAGAGAGCAT 60.159 45.455 9.30 0.00 0.00 3.79
2972 3979 2.221981 CCGGCGAAATAAAGAGAGCATC 59.778 50.000 9.30 0.00 0.00 3.91
2985 3992 1.731720 GAGCATCTTCCCAGTCACAC 58.268 55.000 0.00 0.00 0.00 3.82
2986 3993 0.326264 AGCATCTTCCCAGTCACACC 59.674 55.000 0.00 0.00 0.00 4.16
2987 3994 0.326264 GCATCTTCCCAGTCACACCT 59.674 55.000 0.00 0.00 0.00 4.00
2988 3995 1.677217 GCATCTTCCCAGTCACACCTC 60.677 57.143 0.00 0.00 0.00 3.85
2989 3996 1.625315 CATCTTCCCAGTCACACCTCA 59.375 52.381 0.00 0.00 0.00 3.86
2990 3997 2.030027 TCTTCCCAGTCACACCTCAT 57.970 50.000 0.00 0.00 0.00 2.90
2991 3998 1.902508 TCTTCCCAGTCACACCTCATC 59.097 52.381 0.00 0.00 0.00 2.92
2992 3999 0.984230 TTCCCAGTCACACCTCATCC 59.016 55.000 0.00 0.00 0.00 3.51
2993 4000 0.909610 TCCCAGTCACACCTCATCCC 60.910 60.000 0.00 0.00 0.00 3.85
2994 4001 1.200760 CCCAGTCACACCTCATCCCA 61.201 60.000 0.00 0.00 0.00 4.37
2995 4002 0.692476 CCAGTCACACCTCATCCCAA 59.308 55.000 0.00 0.00 0.00 4.12
2996 4003 1.339438 CCAGTCACACCTCATCCCAAG 60.339 57.143 0.00 0.00 0.00 3.61
2997 4004 0.326264 AGTCACACCTCATCCCAAGC 59.674 55.000 0.00 0.00 0.00 4.01
2998 4005 0.036732 GTCACACCTCATCCCAAGCA 59.963 55.000 0.00 0.00 0.00 3.91
2999 4006 0.770499 TCACACCTCATCCCAAGCAA 59.230 50.000 0.00 0.00 0.00 3.91
3000 4007 1.144708 TCACACCTCATCCCAAGCAAA 59.855 47.619 0.00 0.00 0.00 3.68
3001 4008 1.962807 CACACCTCATCCCAAGCAAAA 59.037 47.619 0.00 0.00 0.00 2.44
3002 4009 2.029649 CACACCTCATCCCAAGCAAAAG 60.030 50.000 0.00 0.00 0.00 2.27
3003 4010 2.242043 CACCTCATCCCAAGCAAAAGT 58.758 47.619 0.00 0.00 0.00 2.66
3004 4011 2.629617 CACCTCATCCCAAGCAAAAGTT 59.370 45.455 0.00 0.00 0.00 2.66
3005 4012 3.070015 CACCTCATCCCAAGCAAAAGTTT 59.930 43.478 0.00 0.00 0.00 2.66
3006 4013 3.070015 ACCTCATCCCAAGCAAAAGTTTG 59.930 43.478 0.00 0.00 41.03 2.93
3007 4014 3.070015 CCTCATCCCAAGCAAAAGTTTGT 59.930 43.478 5.71 0.00 40.24 2.83
3008 4015 4.053295 CTCATCCCAAGCAAAAGTTTGTG 58.947 43.478 5.71 0.00 40.24 3.33
3009 4016 3.703556 TCATCCCAAGCAAAAGTTTGTGA 59.296 39.130 5.71 0.00 40.24 3.58
3010 4017 3.799281 TCCCAAGCAAAAGTTTGTGAG 57.201 42.857 5.71 0.00 40.24 3.51
3011 4018 2.430332 TCCCAAGCAAAAGTTTGTGAGG 59.570 45.455 5.71 5.04 40.24 3.86
3012 4019 2.430332 CCCAAGCAAAAGTTTGTGAGGA 59.570 45.455 5.71 0.00 40.24 3.71
3013 4020 3.491447 CCCAAGCAAAAGTTTGTGAGGAG 60.491 47.826 5.71 0.00 40.24 3.69
3014 4021 3.381272 CCAAGCAAAAGTTTGTGAGGAGA 59.619 43.478 5.71 0.00 40.24 3.71
3015 4022 4.142182 CCAAGCAAAAGTTTGTGAGGAGAA 60.142 41.667 5.71 0.00 40.24 2.87
3016 4023 5.452356 CCAAGCAAAAGTTTGTGAGGAGAAT 60.452 40.000 5.71 0.00 40.24 2.40
3017 4024 5.192327 AGCAAAAGTTTGTGAGGAGAATG 57.808 39.130 5.71 0.00 40.24 2.67
3018 4025 4.889409 AGCAAAAGTTTGTGAGGAGAATGA 59.111 37.500 5.71 0.00 40.24 2.57
3019 4026 5.537674 AGCAAAAGTTTGTGAGGAGAATGAT 59.462 36.000 5.71 0.00 40.24 2.45
3020 4027 6.041296 AGCAAAAGTTTGTGAGGAGAATGATT 59.959 34.615 5.71 0.00 40.24 2.57
3021 4028 7.231317 AGCAAAAGTTTGTGAGGAGAATGATTA 59.769 33.333 5.71 0.00 40.24 1.75
3022 4029 7.867403 GCAAAAGTTTGTGAGGAGAATGATTAA 59.133 33.333 5.71 0.00 40.24 1.40
3023 4030 9.403110 CAAAAGTTTGTGAGGAGAATGATTAAG 57.597 33.333 0.00 0.00 33.59 1.85
3024 4031 8.697507 AAAGTTTGTGAGGAGAATGATTAAGT 57.302 30.769 0.00 0.00 0.00 2.24
3025 4032 7.678947 AGTTTGTGAGGAGAATGATTAAGTG 57.321 36.000 0.00 0.00 0.00 3.16
3026 4033 6.656693 AGTTTGTGAGGAGAATGATTAAGTGG 59.343 38.462 0.00 0.00 0.00 4.00
3027 4034 5.102953 TGTGAGGAGAATGATTAAGTGGG 57.897 43.478 0.00 0.00 0.00 4.61
3028 4035 3.879892 GTGAGGAGAATGATTAAGTGGGC 59.120 47.826 0.00 0.00 0.00 5.36
3029 4036 3.117888 TGAGGAGAATGATTAAGTGGGCC 60.118 47.826 0.00 0.00 0.00 5.80
3030 4037 2.852449 AGGAGAATGATTAAGTGGGCCA 59.148 45.455 0.00 0.00 0.00 5.36
3031 4038 3.269381 AGGAGAATGATTAAGTGGGCCAA 59.731 43.478 8.40 0.00 0.00 4.52
3032 4039 3.633986 GGAGAATGATTAAGTGGGCCAAG 59.366 47.826 8.40 0.00 0.00 3.61
3033 4040 4.526970 GAGAATGATTAAGTGGGCCAAGA 58.473 43.478 8.40 0.00 0.00 3.02
3034 4041 4.934356 AGAATGATTAAGTGGGCCAAGAA 58.066 39.130 8.40 2.64 0.00 2.52
3035 4042 5.332743 AGAATGATTAAGTGGGCCAAGAAA 58.667 37.500 8.40 2.49 0.00 2.52
3036 4043 5.779771 AGAATGATTAAGTGGGCCAAGAAAA 59.220 36.000 8.40 0.37 0.00 2.29
3037 4044 6.269769 AGAATGATTAAGTGGGCCAAGAAAAA 59.730 34.615 8.40 0.00 0.00 1.94
3038 4045 5.467035 TGATTAAGTGGGCCAAGAAAAAG 57.533 39.130 8.40 0.00 0.00 2.27
3039 4046 4.283212 TGATTAAGTGGGCCAAGAAAAAGG 59.717 41.667 8.40 0.00 0.00 3.11
3040 4047 2.470057 AAGTGGGCCAAGAAAAAGGA 57.530 45.000 8.40 0.00 0.00 3.36
3041 4048 1.704641 AGTGGGCCAAGAAAAAGGAC 58.295 50.000 8.40 0.00 0.00 3.85
3042 4049 1.063266 AGTGGGCCAAGAAAAAGGACA 60.063 47.619 8.40 0.00 33.29 4.02
3043 4050 1.970640 GTGGGCCAAGAAAAAGGACAT 59.029 47.619 8.40 0.00 33.29 3.06
3044 4051 1.969923 TGGGCCAAGAAAAAGGACATG 59.030 47.619 2.13 0.00 33.29 3.21
3045 4052 1.970640 GGGCCAAGAAAAAGGACATGT 59.029 47.619 4.39 0.00 33.29 3.21
3046 4053 2.289010 GGGCCAAGAAAAAGGACATGTG 60.289 50.000 1.15 0.00 33.29 3.21
3047 4054 2.289010 GGCCAAGAAAAAGGACATGTGG 60.289 50.000 1.15 0.00 31.39 4.17
3048 4055 2.365293 GCCAAGAAAAAGGACATGTGGT 59.635 45.455 1.15 0.00 0.00 4.16
3049 4056 3.799917 GCCAAGAAAAAGGACATGTGGTG 60.800 47.826 1.15 0.00 0.00 4.17
3050 4057 3.636300 CCAAGAAAAAGGACATGTGGTGA 59.364 43.478 1.15 0.00 0.00 4.02
3051 4058 4.261741 CCAAGAAAAAGGACATGTGGTGAG 60.262 45.833 1.15 0.00 0.00 3.51
3052 4059 4.437682 AGAAAAAGGACATGTGGTGAGA 57.562 40.909 1.15 0.00 0.00 3.27
3053 4060 4.137543 AGAAAAAGGACATGTGGTGAGAC 58.862 43.478 1.15 0.00 0.00 3.36
3054 4061 3.576078 AAAAGGACATGTGGTGAGACA 57.424 42.857 1.15 0.00 0.00 3.41
3055 4062 2.550830 AAGGACATGTGGTGAGACAC 57.449 50.000 1.15 0.00 41.68 3.67
3056 4063 0.318441 AGGACATGTGGTGAGACACG 59.682 55.000 1.15 0.00 44.21 4.49
3057 4064 0.317160 GGACATGTGGTGAGACACGA 59.683 55.000 1.15 0.00 44.21 4.35
3058 4065 1.066858 GGACATGTGGTGAGACACGAT 60.067 52.381 1.15 0.00 44.21 3.73
3059 4066 2.612972 GGACATGTGGTGAGACACGATT 60.613 50.000 1.15 0.00 44.21 3.34
3060 4067 2.668457 GACATGTGGTGAGACACGATTC 59.332 50.000 1.15 0.00 44.21 2.52
3061 4068 1.655597 CATGTGGTGAGACACGATTCG 59.344 52.381 4.14 4.14 44.21 3.34
3062 4069 0.666274 TGTGGTGAGACACGATTCGC 60.666 55.000 5.86 0.00 44.21 4.70
3063 4070 1.080093 TGGTGAGACACGATTCGCC 60.080 57.895 5.86 0.00 42.87 5.54
3064 4071 2.158959 GGTGAGACACGATTCGCCG 61.159 63.158 5.86 0.00 34.60 6.46
3065 4072 1.154093 GTGAGACACGATTCGCCGA 60.154 57.895 5.86 0.00 0.00 5.54
3066 4073 0.731514 GTGAGACACGATTCGCCGAA 60.732 55.000 0.33 0.33 0.00 4.30
3067 4074 0.038983 TGAGACACGATTCGCCGAAA 60.039 50.000 2.60 0.00 0.00 3.46
3068 4075 0.365859 GAGACACGATTCGCCGAAAC 59.634 55.000 2.60 0.00 0.00 2.78
3069 4076 0.038526 AGACACGATTCGCCGAAACT 60.039 50.000 2.60 0.00 0.00 2.66
3070 4077 0.788391 GACACGATTCGCCGAAACTT 59.212 50.000 2.60 0.00 0.00 2.66
3071 4078 0.788391 ACACGATTCGCCGAAACTTC 59.212 50.000 2.60 0.00 0.00 3.01
3072 4079 0.094730 CACGATTCGCCGAAACTTCC 59.905 55.000 2.60 0.00 0.00 3.46
3073 4080 1.343821 CGATTCGCCGAAACTTCCG 59.656 57.895 2.60 0.00 0.00 4.30
3074 4081 1.060465 GATTCGCCGAAACTTCCGC 59.940 57.895 2.60 0.00 0.00 5.54
3075 4082 2.305826 GATTCGCCGAAACTTCCGCC 62.306 60.000 2.60 0.00 0.00 6.13
3096 4103 3.732849 GCCCCCAAGAGACCCCAG 61.733 72.222 0.00 0.00 0.00 4.45
3097 4104 3.732849 CCCCCAAGAGACCCCAGC 61.733 72.222 0.00 0.00 0.00 4.85
3098 4105 4.101448 CCCCAAGAGACCCCAGCG 62.101 72.222 0.00 0.00 0.00 5.18
3099 4106 4.785453 CCCAAGAGACCCCAGCGC 62.785 72.222 0.00 0.00 0.00 5.92
3117 4124 3.914094 GGGTTTTCCGGCGCTATT 58.086 55.556 7.64 0.00 41.82 1.73
3118 4125 2.186155 GGGTTTTCCGGCGCTATTT 58.814 52.632 7.64 0.00 41.82 1.40
3119 4126 0.528924 GGGTTTTCCGGCGCTATTTT 59.471 50.000 7.64 0.00 41.82 1.82
3120 4127 1.624487 GGTTTTCCGGCGCTATTTTG 58.376 50.000 7.64 0.00 0.00 2.44
3121 4128 1.200484 GGTTTTCCGGCGCTATTTTGA 59.800 47.619 7.64 0.00 0.00 2.69
3122 4129 2.247637 GTTTTCCGGCGCTATTTTGAC 58.752 47.619 7.64 0.00 0.00 3.18
3123 4130 0.444651 TTTCCGGCGCTATTTTGACG 59.555 50.000 7.64 0.00 0.00 4.35
3124 4131 0.671163 TTCCGGCGCTATTTTGACGT 60.671 50.000 7.64 0.00 0.00 4.34
3125 4132 1.079875 TCCGGCGCTATTTTGACGTC 61.080 55.000 9.11 9.11 0.00 4.34
3126 4133 1.347221 CGGCGCTATTTTGACGTCC 59.653 57.895 14.12 0.00 0.00 4.79
3127 4134 1.082117 CGGCGCTATTTTGACGTCCT 61.082 55.000 14.12 0.00 0.00 3.85
3128 4135 0.373716 GGCGCTATTTTGACGTCCTG 59.626 55.000 14.12 0.00 0.00 3.86
3129 4136 0.373716 GCGCTATTTTGACGTCCTGG 59.626 55.000 14.12 0.00 0.00 4.45
3130 4137 1.006832 CGCTATTTTGACGTCCTGGG 58.993 55.000 14.12 1.65 0.00 4.45
3131 4138 1.379527 GCTATTTTGACGTCCTGGGG 58.620 55.000 14.12 0.27 0.00 4.96
3132 4139 2.017113 GCTATTTTGACGTCCTGGGGG 61.017 57.143 14.12 0.80 0.00 5.40
3154 4161 2.962569 GGCTGGGCCTTTTTCGAC 59.037 61.111 4.53 0.00 46.69 4.20
3155 4162 2.561373 GCTGGGCCTTTTTCGACG 59.439 61.111 4.53 0.00 0.00 5.12
3156 4163 1.964373 GCTGGGCCTTTTTCGACGA 60.964 57.895 4.53 0.00 0.00 4.20
3157 4164 1.512156 GCTGGGCCTTTTTCGACGAA 61.512 55.000 6.10 6.10 0.00 3.85
3158 4165 0.948678 CTGGGCCTTTTTCGACGAAA 59.051 50.000 18.66 18.66 0.00 3.46
3159 4166 1.335496 CTGGGCCTTTTTCGACGAAAA 59.665 47.619 27.21 27.21 39.36 2.29
3160 4167 1.335496 TGGGCCTTTTTCGACGAAAAG 59.665 47.619 28.58 21.37 41.55 2.27
3161 4168 1.335810 GGGCCTTTTTCGACGAAAAGT 59.664 47.619 28.58 0.00 41.55 2.66
3162 4169 2.381589 GGCCTTTTTCGACGAAAAGTG 58.618 47.619 28.58 24.18 41.55 3.16
3163 4170 1.779157 GCCTTTTTCGACGAAAAGTGC 59.221 47.619 28.58 28.08 41.55 4.40
3164 4171 2.381589 CCTTTTTCGACGAAAAGTGCC 58.618 47.619 28.58 0.00 41.55 5.01
3165 4172 2.034076 CTTTTTCGACGAAAAGTGCCG 58.966 47.619 28.58 15.71 41.55 5.69
3166 4173 1.008329 TTTTCGACGAAAAGTGCCGT 58.992 45.000 27.21 0.00 36.73 5.68
3169 4176 2.851104 GACGAAAAGTGCCGTCCG 59.149 61.111 0.00 0.00 46.54 4.79
3170 4177 1.662446 GACGAAAAGTGCCGTCCGA 60.662 57.895 0.00 0.00 46.54 4.55
3171 4178 1.615107 GACGAAAAGTGCCGTCCGAG 61.615 60.000 0.00 0.00 46.54 4.63
3172 4179 2.861006 GAAAAGTGCCGTCCGAGC 59.139 61.111 0.00 0.00 0.00 5.03
3173 4180 2.668550 AAAAGTGCCGTCCGAGCC 60.669 61.111 0.00 0.00 0.00 4.70
3174 4181 3.178540 AAAAGTGCCGTCCGAGCCT 62.179 57.895 0.00 0.00 0.00 4.58
3175 4182 1.823169 AAAAGTGCCGTCCGAGCCTA 61.823 55.000 0.00 0.00 0.00 3.93
3176 4183 1.823169 AAAGTGCCGTCCGAGCCTAA 61.823 55.000 0.00 0.00 0.00 2.69
3177 4184 1.823169 AAGTGCCGTCCGAGCCTAAA 61.823 55.000 0.00 0.00 0.00 1.85
3178 4185 1.375013 GTGCCGTCCGAGCCTAAAA 60.375 57.895 0.00 0.00 0.00 1.52
3179 4186 1.375013 TGCCGTCCGAGCCTAAAAC 60.375 57.895 0.00 0.00 0.00 2.43
3180 4187 2.104859 GCCGTCCGAGCCTAAAACC 61.105 63.158 0.00 0.00 0.00 3.27
3181 4188 1.808390 CCGTCCGAGCCTAAAACCG 60.808 63.158 0.00 0.00 0.00 4.44
3182 4189 1.808390 CGTCCGAGCCTAAAACCGG 60.808 63.158 0.00 0.00 43.02 5.28
3183 4190 1.449070 GTCCGAGCCTAAAACCGGG 60.449 63.158 6.32 0.00 42.03 5.73
3189 4196 3.269578 GCCTAAAACCGGGCCTAAA 57.730 52.632 6.32 0.00 42.30 1.85
3190 4197 1.548081 GCCTAAAACCGGGCCTAAAA 58.452 50.000 6.32 0.00 42.30 1.52
3191 4198 1.894466 GCCTAAAACCGGGCCTAAAAA 59.106 47.619 6.32 0.00 42.30 1.94
3192 4199 2.094390 GCCTAAAACCGGGCCTAAAAAG 60.094 50.000 6.32 0.00 42.30 2.27
3193 4200 2.494471 CCTAAAACCGGGCCTAAAAAGG 59.506 50.000 6.32 0.00 0.00 3.11
3194 4201 2.091098 AAAACCGGGCCTAAAAAGGT 57.909 45.000 6.32 0.00 36.66 3.50
3195 4202 1.334160 AAACCGGGCCTAAAAAGGTG 58.666 50.000 6.32 0.00 35.08 4.00
3196 4203 0.186630 AACCGGGCCTAAAAAGGTGT 59.813 50.000 6.32 0.00 35.08 4.16
3197 4204 0.251033 ACCGGGCCTAAAAAGGTGTC 60.251 55.000 6.32 0.00 33.37 3.67
3198 4205 0.963856 CCGGGCCTAAAAAGGTGTCC 60.964 60.000 0.84 0.00 0.00 4.02
3199 4206 0.037734 CGGGCCTAAAAAGGTGTCCT 59.962 55.000 0.84 0.00 33.87 3.85
3200 4207 1.545841 GGGCCTAAAAAGGTGTCCTG 58.454 55.000 0.84 0.00 32.13 3.86
3201 4208 1.545841 GGCCTAAAAAGGTGTCCTGG 58.454 55.000 0.00 0.00 32.13 4.45
3202 4209 1.545841 GCCTAAAAAGGTGTCCTGGG 58.454 55.000 0.00 0.00 32.13 4.45
3203 4210 1.891011 GCCTAAAAAGGTGTCCTGGGG 60.891 57.143 0.00 0.00 32.13 4.96
3204 4211 1.272480 CCTAAAAAGGTGTCCTGGGGG 60.272 57.143 0.00 0.00 32.13 5.40
3223 4230 2.840102 CCGTCCTGGGGAGGCTAG 60.840 72.222 0.00 0.00 36.40 3.42
3224 4231 2.042843 CGTCCTGGGGAGGCTAGT 60.043 66.667 0.00 0.00 30.80 2.57
3225 4232 2.427245 CGTCCTGGGGAGGCTAGTG 61.427 68.421 0.00 0.00 30.80 2.74
3226 4233 2.066999 GTCCTGGGGAGGCTAGTGG 61.067 68.421 0.00 0.00 29.39 4.00
3227 4234 2.253656 TCCTGGGGAGGCTAGTGGA 61.254 63.158 0.00 0.00 0.00 4.02
3228 4235 1.764054 CCTGGGGAGGCTAGTGGAG 60.764 68.421 0.00 0.00 0.00 3.86
3229 4236 1.311403 CTGGGGAGGCTAGTGGAGA 59.689 63.158 0.00 0.00 0.00 3.71
3230 4237 0.105246 CTGGGGAGGCTAGTGGAGAT 60.105 60.000 0.00 0.00 0.00 2.75
3231 4238 0.399091 TGGGGAGGCTAGTGGAGATG 60.399 60.000 0.00 0.00 0.00 2.90
3232 4239 1.751563 GGGAGGCTAGTGGAGATGC 59.248 63.158 0.00 0.00 0.00 3.91
3233 4240 0.762461 GGGAGGCTAGTGGAGATGCT 60.762 60.000 0.00 0.00 0.00 3.79
3234 4241 0.678950 GGAGGCTAGTGGAGATGCTC 59.321 60.000 0.00 0.00 0.00 4.26
3235 4242 1.703411 GAGGCTAGTGGAGATGCTCT 58.297 55.000 0.00 0.00 0.00 4.09
3236 4243 2.038659 GAGGCTAGTGGAGATGCTCTT 58.961 52.381 0.00 0.00 0.00 2.85
3237 4244 3.226777 GAGGCTAGTGGAGATGCTCTTA 58.773 50.000 0.00 0.00 0.00 2.10
3238 4245 2.962421 AGGCTAGTGGAGATGCTCTTAC 59.038 50.000 0.00 0.00 0.00 2.34
3253 4260 2.830321 CTCTTACCGGTCAAAGGTAGGT 59.170 50.000 12.40 0.00 44.16 3.08
3261 4268 2.552743 GGTCAAAGGTAGGTTGAAGTGC 59.447 50.000 0.00 0.00 36.77 4.40
3312 4319 8.410141 CCAAATCGGTTTTAGCCTTATTTGATA 58.590 33.333 15.43 0.00 39.38 2.15
3351 4358 2.368439 CCGTGTTCATGGACCAATGAT 58.632 47.619 0.46 0.00 36.48 2.45
3493 4501 0.108585 GTTCTGCTGGGTGAACCTGA 59.891 55.000 0.00 0.00 40.42 3.86
3986 4994 2.921754 GCGACATATACAATCCTACCGC 59.078 50.000 0.00 0.00 0.00 5.68
3987 4995 3.508762 CGACATATACAATCCTACCGCC 58.491 50.000 0.00 0.00 0.00 6.13
4267 5275 4.559386 CGATGCGGCGCGAGTTTC 62.559 66.667 28.09 16.41 0.00 2.78
4271 5279 2.780149 ATGCGGCGCGAGTTTCAAAC 62.780 55.000 28.09 0.00 0.00 2.93
4389 5397 4.499758 GTGATCGATGGACGTTTCTAGAAC 59.500 45.833 0.54 0.00 43.13 3.01
4475 7288 1.199624 GCGCAACTTGAGTTTTGGTG 58.800 50.000 0.30 0.00 35.83 4.17
4478 7291 2.159448 CGCAACTTGAGTTTTGGTGTCA 60.159 45.455 0.00 0.00 35.83 3.58
4548 7361 5.247862 GGGTTCTATTTCTTGACGGGTAAA 58.752 41.667 0.00 0.00 0.00 2.01
4551 7364 7.553760 GGGTTCTATTTCTTGACGGGTAAATTA 59.446 37.037 0.00 0.00 0.00 1.40
4590 7720 7.042797 TGTATTTAGGGGTTCTATACGTGAC 57.957 40.000 0.00 0.00 0.00 3.67
4593 7723 2.105766 AGGGGTTCTATACGTGACACC 58.894 52.381 0.00 0.00 0.00 4.16
4608 7738 3.196901 GTGACACCTTTTCCTTTTTGGGT 59.803 43.478 0.00 0.00 36.20 4.51
4632 7765 2.699251 CGTCGACCGGATGATAATCA 57.301 50.000 9.46 0.00 33.19 2.57
4633 7766 2.316792 CGTCGACCGGATGATAATCAC 58.683 52.381 9.46 0.00 33.19 3.06
4639 7772 4.328169 CGACCGGATGATAATCACATCATG 59.672 45.833 9.46 0.00 43.97 3.07
4648 7781 2.609427 ATCACATCATGGACCGTCTG 57.391 50.000 0.00 0.00 0.00 3.51
4738 7871 2.499197 TCGTAACATGGCATGTGTTGT 58.501 42.857 31.99 19.27 44.07 3.32
4799 7932 4.218200 TCGAACCGTTTTCTACTGGTCATA 59.782 41.667 0.00 0.00 34.17 2.15
4847 7982 4.574828 GGTTTATGTGCCGACTATGATGTT 59.425 41.667 0.00 0.00 0.00 2.71
4857 7992 2.939103 GACTATGATGTTGCCACCTGTC 59.061 50.000 0.00 0.00 0.00 3.51
4911 8046 2.894731 TGGGTTATGTTGCAATCCCAA 58.105 42.857 19.33 4.83 41.38 4.12
4928 8063 2.564771 CCAAGCTGAACTCTCACACAA 58.435 47.619 0.00 0.00 0.00 3.33
4942 8077 1.335132 ACACAAGTCCCACACCTCGT 61.335 55.000 0.00 0.00 0.00 4.18
4944 8079 1.372997 CAAGTCCCACACCTCGTCG 60.373 63.158 0.00 0.00 0.00 5.12
4988 8123 1.509463 CATGCTGCAATTCCACGCT 59.491 52.632 6.36 0.00 0.00 5.07
4996 8131 1.078143 AATTCCACGCTGAGCTCCC 60.078 57.895 12.15 0.94 0.00 4.30
5030 8165 3.710722 CTCAAGCTGCCCCCGTCT 61.711 66.667 0.00 0.00 0.00 4.18
5035 8170 2.282180 GCTGCCCCCGTCTTTTGA 60.282 61.111 0.00 0.00 0.00 2.69
5037 8172 1.866853 GCTGCCCCCGTCTTTTGAAG 61.867 60.000 0.00 0.00 0.00 3.02
5050 8185 6.262601 CGTCTTTTGAAGTATGGTTTGTGTT 58.737 36.000 0.00 0.00 0.00 3.32
5054 8189 4.300189 TGAAGTATGGTTTGTGTTGTGC 57.700 40.909 0.00 0.00 0.00 4.57
5067 8202 0.104671 GTTGTGCTTGCAACATGGGT 59.895 50.000 0.00 0.00 45.70 4.51
5083 8218 5.327616 CATGGGTCATGTTGCAAATCTTA 57.672 39.130 0.00 0.00 37.12 2.10
5086 8221 3.429410 GGGTCATGTTGCAAATCTTAGCC 60.429 47.826 0.00 1.53 0.00 3.93
5093 8228 3.266510 TGCAAATCTTAGCCGAGACAT 57.733 42.857 0.00 0.00 0.00 3.06
5094 8229 2.938451 TGCAAATCTTAGCCGAGACATG 59.062 45.455 0.00 0.00 0.00 3.21
5095 8230 2.939103 GCAAATCTTAGCCGAGACATGT 59.061 45.455 0.00 0.00 0.00 3.21
5106 8241 3.558411 GACATGTCTCAGGCGCGC 61.558 66.667 25.94 25.94 0.00 6.86
5123 8258 1.595382 GCGAGGAATCGGATGGTGG 60.595 63.158 0.00 0.00 0.00 4.61
5127 8262 0.767375 AGGAATCGGATGGTGGGATG 59.233 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.668706 CCTTGCTCTGTCGGTCACTG 60.669 60.000 0.00 0.00 0.00 3.66
53 54 7.597288 ATTACCTTGCTTTCCAAATATACCC 57.403 36.000 0.00 0.00 31.94 3.69
68 69 4.842376 GTCACGTTTACGAAATTACCTTGC 59.158 41.667 9.53 0.00 43.02 4.01
120 121 6.681729 ACTCCCTCCGCTCATTATTATAAA 57.318 37.500 0.00 0.00 0.00 1.40
129 130 1.112315 CAGCTACTCCCTCCGCTCAT 61.112 60.000 0.00 0.00 0.00 2.90
167 168 6.524734 AGGGAGCAAATTACCAAAGAAAAAG 58.475 36.000 0.00 0.00 0.00 2.27
201 202 7.313731 AGAGGATCCTATGACCCTATTTGTTA 58.686 38.462 16.16 0.00 33.66 2.41
233 234 4.006319 AGTGAGTTCTTTATTGCTGGAGC 58.994 43.478 0.00 0.00 42.50 4.70
303 305 7.927048 ACACTCGTAAAAAGCATTTAGAAAGT 58.073 30.769 0.00 0.00 37.28 2.66
304 306 7.534239 GGACACTCGTAAAAAGCATTTAGAAAG 59.466 37.037 0.00 0.00 37.28 2.62
305 307 7.357303 GGACACTCGTAAAAAGCATTTAGAAA 58.643 34.615 0.00 0.00 37.28 2.52
306 308 6.347079 CGGACACTCGTAAAAAGCATTTAGAA 60.347 38.462 0.00 0.00 37.28 2.10
307 309 5.119588 CGGACACTCGTAAAAAGCATTTAGA 59.880 40.000 0.00 0.00 37.28 2.10
395 398 2.200092 ACCACCGCCCAAAACCAT 59.800 55.556 0.00 0.00 0.00 3.55
437 456 4.790962 CTGCCATGCCGCTCCACT 62.791 66.667 0.00 0.00 0.00 4.00
994 1014 0.397254 GTCCTCCCCTTCATCTCCGA 60.397 60.000 0.00 0.00 0.00 4.55
1143 1163 1.850549 CCCTCCCTTTGGAACACCA 59.149 57.895 0.00 0.00 41.17 4.17
1162 1182 1.867233 CGAATCAACTAATGGAGGCCG 59.133 52.381 0.00 0.00 0.00 6.13
1177 1197 4.212214 GCCAGGTACAAGATTGATCGAATC 59.788 45.833 0.00 8.84 40.92 2.52
1255 1275 6.072563 CGTCATGATGAGAGACACAGATAGAT 60.073 42.308 9.46 0.00 32.68 1.98
1376 1396 1.573829 TTTGACTCACGAATGCGCCC 61.574 55.000 4.18 0.00 42.48 6.13
1429 1449 6.140108 CGGTCAATATTGCGTTGCTTAATAAC 59.860 38.462 10.76 0.00 0.00 1.89
1446 1466 5.833406 TGGTACTTAACGATCGGTCAATA 57.167 39.130 20.98 3.02 0.00 1.90
1526 1546 3.110178 CTTCGTGTTCCGCGGGAC 61.110 66.667 30.37 30.37 37.97 4.46
1577 1597 4.839706 GGCCATTGGGGACGCCAT 62.840 66.667 12.67 0.00 41.25 4.40
1793 1813 4.932268 CTATACTAGCTGCTACGAGGTC 57.068 50.000 5.02 0.00 0.00 3.85
1814 1834 0.449388 GCATGTGTGTGCCTTAGAGC 59.551 55.000 0.00 0.00 39.18 4.09
1815 1835 1.466167 GTGCATGTGTGTGCCTTAGAG 59.534 52.381 0.00 0.00 44.43 2.43
1817 1837 1.527034 AGTGCATGTGTGTGCCTTAG 58.473 50.000 0.00 0.00 44.43 2.18
1818 1838 2.849294 TAGTGCATGTGTGTGCCTTA 57.151 45.000 0.00 0.00 44.43 2.69
1819 1839 2.205022 ATAGTGCATGTGTGTGCCTT 57.795 45.000 0.00 0.00 44.43 4.35
1821 1841 1.811965 TGAATAGTGCATGTGTGTGCC 59.188 47.619 0.00 0.00 44.43 5.01
1822 1842 3.770263 ATGAATAGTGCATGTGTGTGC 57.230 42.857 0.00 0.00 45.25 4.57
1823 1843 6.426980 ACTTATGAATAGTGCATGTGTGTG 57.573 37.500 0.00 0.00 0.00 3.82
1824 1844 6.623549 GCAACTTATGAATAGTGCATGTGTGT 60.624 38.462 0.00 0.00 0.00 3.72
1864 1891 3.641437 TCCGAAAATTTGACTTGCCAG 57.359 42.857 0.00 0.00 0.00 4.85
1933 1963 7.148355 AGAAGACGAGTACTAAAGGAAGAAG 57.852 40.000 0.00 0.00 0.00 2.85
2017 2047 3.374764 TGCTCTAATTAGACAGCTCCCA 58.625 45.455 20.99 4.94 0.00 4.37
2021 2051 5.885449 ATTCCTGCTCTAATTAGACAGCT 57.115 39.130 24.73 15.59 33.78 4.24
2065 2095 9.898152 AAAGATTTTTACATCCTTTGACCAAAA 57.102 25.926 0.00 0.00 0.00 2.44
2088 2118 5.289434 GCTTTGACCAAGTTTGTGAAGAAAG 59.711 40.000 0.00 0.00 34.56 2.62
2168 2198 7.526918 ACCAGCTTGCTATATTAAAATACCCT 58.473 34.615 0.00 0.00 0.00 4.34
2226 2256 4.024809 GCTCTTGTCGCCTAATTGGATTAC 60.025 45.833 0.00 0.00 38.35 1.89
2243 2273 1.067354 GCCCCATTGAAGTTGCTCTTG 60.067 52.381 0.00 0.00 36.40 3.02
2247 2277 1.074775 TCGCCCCATTGAAGTTGCT 59.925 52.632 0.00 0.00 0.00 3.91
2248 2278 1.212751 GTCGCCCCATTGAAGTTGC 59.787 57.895 0.00 0.00 0.00 4.17
2249 2279 1.883021 GGTCGCCCCATTGAAGTTG 59.117 57.895 0.00 0.00 0.00 3.16
2250 2280 4.415783 GGTCGCCCCATTGAAGTT 57.584 55.556 0.00 0.00 0.00 2.66
2260 2290 2.696759 CGGACAAAATGGGTCGCCC 61.697 63.158 7.87 7.87 45.71 6.13
2262 2292 0.312729 AAACGGACAAAATGGGTCGC 59.687 50.000 0.00 0.00 36.12 5.19
2265 2295 1.044611 CCCAAACGGACAAAATGGGT 58.955 50.000 0.90 0.00 44.67 4.51
2266 2296 3.904586 CCCAAACGGACAAAATGGG 57.095 52.632 0.00 0.00 44.38 4.00
2267 2297 1.683917 TGACCCAAACGGACAAAATGG 59.316 47.619 0.00 0.00 33.04 3.16
2268 2298 3.120041 GTTGACCCAAACGGACAAAATG 58.880 45.455 0.00 0.00 45.88 2.32
2269 2299 2.101750 GGTTGACCCAAACGGACAAAAT 59.898 45.455 0.00 0.00 45.88 1.82
2270 2300 1.477295 GGTTGACCCAAACGGACAAAA 59.523 47.619 0.00 0.00 45.88 2.44
2273 2303 4.563404 GGTTGACCCAAACGGACA 57.437 55.556 0.00 0.00 34.24 4.02
2279 2309 0.034380 TTGTGTCCGGTTGACCCAAA 60.034 50.000 0.00 0.00 43.78 3.28
2280 2310 0.034380 TTTGTGTCCGGTTGACCCAA 60.034 50.000 0.00 0.00 43.78 4.12
2281 2311 0.034380 TTTTGTGTCCGGTTGACCCA 60.034 50.000 0.00 0.00 43.78 4.51
2282 2312 0.666374 CTTTTGTGTCCGGTTGACCC 59.334 55.000 0.00 0.00 43.78 4.46
2283 2313 1.385528 ACTTTTGTGTCCGGTTGACC 58.614 50.000 0.00 0.00 43.78 4.02
2284 2314 2.478879 CCAACTTTTGTGTCCGGTTGAC 60.479 50.000 0.00 0.00 44.72 3.18
2285 2315 1.746220 CCAACTTTTGTGTCCGGTTGA 59.254 47.619 0.00 0.00 39.39 3.18
2286 2316 1.474879 ACCAACTTTTGTGTCCGGTTG 59.525 47.619 0.00 0.00 37.56 3.77
2287 2317 1.746787 GACCAACTTTTGTGTCCGGTT 59.253 47.619 0.00 0.00 0.00 4.44
2288 2318 1.385528 GACCAACTTTTGTGTCCGGT 58.614 50.000 0.00 0.00 0.00 5.28
2289 2319 0.666374 GGACCAACTTTTGTGTCCGG 59.334 55.000 0.00 0.00 39.48 5.14
2290 2320 1.384525 TGGACCAACTTTTGTGTCCG 58.615 50.000 15.72 0.00 45.78 4.79
2291 2321 2.478879 CGTTGGACCAACTTTTGTGTCC 60.479 50.000 29.91 14.69 44.42 4.02
2292 2322 2.478879 CCGTTGGACCAACTTTTGTGTC 60.479 50.000 29.91 5.80 41.62 3.67
2293 2323 1.474879 CCGTTGGACCAACTTTTGTGT 59.525 47.619 29.91 0.00 41.62 3.72
2295 2325 1.107945 CCCGTTGGACCAACTTTTGT 58.892 50.000 29.91 0.00 41.62 2.83
2296 2326 0.387565 CCCCGTTGGACCAACTTTTG 59.612 55.000 29.91 16.93 41.62 2.44
2297 2327 1.396607 GCCCCGTTGGACCAACTTTT 61.397 55.000 29.91 0.00 41.62 2.27
2298 2328 1.830847 GCCCCGTTGGACCAACTTT 60.831 57.895 29.91 0.00 41.62 2.66
2299 2329 2.203437 GCCCCGTTGGACCAACTT 60.203 61.111 29.91 0.00 41.62 2.66
2300 2330 4.636435 CGCCCCGTTGGACCAACT 62.636 66.667 29.91 0.00 41.62 3.16
2301 2331 4.629523 TCGCCCCGTTGGACCAAC 62.630 66.667 24.98 24.98 40.54 3.77
2302 2332 4.629523 GTCGCCCCGTTGGACCAA 62.630 66.667 1.69 1.69 35.39 3.67
2313 2343 3.131478 CGTCCATTTGGGTCGCCC 61.131 66.667 7.87 7.87 45.71 6.13
2317 2347 4.160635 CGCGCGTCCATTTGGGTC 62.161 66.667 24.19 0.00 38.11 4.46
2320 2350 3.645157 GACACGCGCGTCCATTTGG 62.645 63.158 35.61 22.36 0.00 3.28
2321 2351 2.202171 GACACGCGCGTCCATTTG 60.202 61.111 35.61 23.20 0.00 2.32
2334 2364 2.279517 CGGATAGCAGGCGGACAC 60.280 66.667 0.00 0.00 0.00 3.67
2335 2365 1.895020 AAACGGATAGCAGGCGGACA 61.895 55.000 0.00 0.00 0.00 4.02
2336 2366 1.153429 AAACGGATAGCAGGCGGAC 60.153 57.895 0.00 0.00 0.00 4.79
2338 2368 1.429148 GACAAACGGATAGCAGGCGG 61.429 60.000 0.00 0.00 0.00 6.13
2339 2369 0.739462 TGACAAACGGATAGCAGGCG 60.739 55.000 0.00 0.00 0.00 5.52
2341 2371 2.213499 GGATGACAAACGGATAGCAGG 58.787 52.381 0.00 0.00 0.00 4.85
2342 2372 1.860950 CGGATGACAAACGGATAGCAG 59.139 52.381 0.00 0.00 0.00 4.24
2344 2374 1.859080 GACGGATGACAAACGGATAGC 59.141 52.381 7.01 0.00 0.00 2.97
2345 2375 2.470821 GGACGGATGACAAACGGATAG 58.529 52.381 7.01 0.00 0.00 2.08
2348 2378 1.294138 GGGACGGATGACAAACGGA 59.706 57.895 7.01 0.00 0.00 4.69
2349 2379 3.884900 GGGACGGATGACAAACGG 58.115 61.111 7.01 0.00 0.00 4.44
2362 2392 0.107654 CTTGGAGATTGGGTCGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
2363 2393 1.271840 CCTTGGAGATTGGGTCGGGA 61.272 60.000 0.00 0.00 0.00 5.14
2364 2394 1.224592 CCTTGGAGATTGGGTCGGG 59.775 63.158 0.00 0.00 0.00 5.14
2365 2395 1.452108 GCCTTGGAGATTGGGTCGG 60.452 63.158 0.00 0.00 0.00 4.79
2366 2396 0.322456 TTGCCTTGGAGATTGGGTCG 60.322 55.000 0.00 0.00 0.00 4.79
2367 2397 1.177401 GTTGCCTTGGAGATTGGGTC 58.823 55.000 0.00 0.00 0.00 4.46
2368 2398 0.482446 TGTTGCCTTGGAGATTGGGT 59.518 50.000 0.00 0.00 0.00 4.51
2369 2399 0.890683 GTGTTGCCTTGGAGATTGGG 59.109 55.000 0.00 0.00 0.00 4.12
2370 2400 0.890683 GGTGTTGCCTTGGAGATTGG 59.109 55.000 0.00 0.00 0.00 3.16
2371 2401 0.523072 CGGTGTTGCCTTGGAGATTG 59.477 55.000 0.00 0.00 34.25 2.67
2374 2404 1.476845 TAGCGGTGTTGCCTTGGAGA 61.477 55.000 0.00 0.00 34.65 3.71
2375 2405 1.003839 TAGCGGTGTTGCCTTGGAG 60.004 57.895 0.00 0.00 34.65 3.86
2376 2406 1.003839 CTAGCGGTGTTGCCTTGGA 60.004 57.895 0.00 0.00 34.65 3.53
2377 2407 2.690778 GCTAGCGGTGTTGCCTTGG 61.691 63.158 0.00 0.00 34.65 3.61
2381 2411 2.359975 AAGGCTAGCGGTGTTGCC 60.360 61.111 9.00 16.61 45.21 4.52
2383 2413 1.009829 GATGAAGGCTAGCGGTGTTG 58.990 55.000 9.00 0.00 0.00 3.33
2386 2416 1.576356 GAAGATGAAGGCTAGCGGTG 58.424 55.000 9.00 0.00 0.00 4.94
2387 2417 0.466124 GGAAGATGAAGGCTAGCGGT 59.534 55.000 9.00 0.00 0.00 5.68
2388 2418 0.755686 AGGAAGATGAAGGCTAGCGG 59.244 55.000 9.00 0.00 0.00 5.52
2389 2419 1.863267 CAGGAAGATGAAGGCTAGCG 58.137 55.000 9.00 0.00 0.00 4.26
2391 2421 1.863267 CGCAGGAAGATGAAGGCTAG 58.137 55.000 0.00 0.00 0.00 3.42
2393 2423 4.950479 CGCAGGAAGATGAAGGCT 57.050 55.556 0.00 0.00 0.00 4.58
2430 3427 0.814457 GACACTCATGGAGACGAGCT 59.186 55.000 0.00 0.00 33.32 4.09
2432 3429 3.584406 AAAGACACTCATGGAGACGAG 57.416 47.619 0.00 0.00 33.32 4.18
2455 3452 1.037579 GCGAAAGGATTCCCCAAGGG 61.038 60.000 0.00 0.00 46.11 3.95
2504 3501 0.736325 CCCGATCGACACAACCTGTC 60.736 60.000 18.66 0.00 45.38 3.51
2530 3527 7.599245 TCCTCAATCTCTCGAACTAAGTTTTTC 59.401 37.037 0.00 0.00 0.00 2.29
2535 3532 4.097286 GCTCCTCAATCTCTCGAACTAAGT 59.903 45.833 0.00 0.00 0.00 2.24
2546 3543 1.522580 GGGCGTGCTCCTCAATCTC 60.523 63.158 0.00 0.00 0.00 2.75
2569 3566 1.601171 CTGGTCCTTGGCTCTCCTG 59.399 63.158 0.00 0.00 0.00 3.86
2598 3595 5.643379 TTTCAGGCCTAGCACAAAATTAG 57.357 39.130 3.98 0.00 0.00 1.73
2719 3725 1.338769 ACAGCACCAACCTAATCGGAC 60.339 52.381 0.00 0.00 36.31 4.79
2760 3766 6.207417 CCAACCTGATTCGGCATAGATAAAAT 59.793 38.462 0.00 0.00 0.00 1.82
2774 3780 1.336240 GCAACAGCACCAACCTGATTC 60.336 52.381 0.00 0.00 34.47 2.52
2786 3792 1.398958 GGGGTCCTTTTGCAACAGCA 61.399 55.000 7.10 0.00 36.26 4.41
2788 3794 0.961753 GAGGGGTCCTTTTGCAACAG 59.038 55.000 5.59 5.59 31.76 3.16
2789 3795 0.555769 AGAGGGGTCCTTTTGCAACA 59.444 50.000 0.00 0.00 31.76 3.33
2790 3796 2.579410 TAGAGGGGTCCTTTTGCAAC 57.421 50.000 0.00 0.00 31.76 4.17
2791 3797 3.825908 ATTAGAGGGGTCCTTTTGCAA 57.174 42.857 0.00 0.00 31.76 4.08
2792 3798 3.825908 AATTAGAGGGGTCCTTTTGCA 57.174 42.857 0.00 0.00 31.76 4.08
2793 3799 3.447586 GGAAATTAGAGGGGTCCTTTTGC 59.552 47.826 0.00 0.00 31.76 3.68
2794 3800 4.023980 GGGAAATTAGAGGGGTCCTTTTG 58.976 47.826 0.00 0.00 31.76 2.44
2795 3801 3.012502 GGGGAAATTAGAGGGGTCCTTTT 59.987 47.826 0.00 0.00 31.76 2.27
2796 3802 2.585900 GGGGAAATTAGAGGGGTCCTTT 59.414 50.000 0.00 0.00 31.76 3.11
2797 3803 2.215093 GGGGAAATTAGAGGGGTCCTT 58.785 52.381 0.00 0.00 31.76 3.36
2798 3804 1.631181 GGGGGAAATTAGAGGGGTCCT 60.631 57.143 0.00 0.00 36.03 3.85
2799 3805 0.851469 GGGGGAAATTAGAGGGGTCC 59.149 60.000 0.00 0.00 0.00 4.46
2815 3821 3.118629 CGACCTGATGTGATATATGGGGG 60.119 52.174 0.00 0.00 0.00 5.40
2816 3822 3.118629 CCGACCTGATGTGATATATGGGG 60.119 52.174 0.00 0.00 0.00 4.96
2817 3823 3.679917 GCCGACCTGATGTGATATATGGG 60.680 52.174 0.00 0.00 0.00 4.00
2818 3824 3.055891 TGCCGACCTGATGTGATATATGG 60.056 47.826 0.00 0.00 0.00 2.74
2819 3825 4.192429 TGCCGACCTGATGTGATATATG 57.808 45.455 0.00 0.00 0.00 1.78
2820 3826 5.181009 CAATGCCGACCTGATGTGATATAT 58.819 41.667 0.00 0.00 0.00 0.86
2821 3827 4.040339 ACAATGCCGACCTGATGTGATATA 59.960 41.667 0.00 0.00 0.00 0.86
2822 3828 3.181451 ACAATGCCGACCTGATGTGATAT 60.181 43.478 0.00 0.00 0.00 1.63
2823 3829 2.170397 ACAATGCCGACCTGATGTGATA 59.830 45.455 0.00 0.00 0.00 2.15
2824 3830 1.065199 ACAATGCCGACCTGATGTGAT 60.065 47.619 0.00 0.00 0.00 3.06
2825 3831 0.324614 ACAATGCCGACCTGATGTGA 59.675 50.000 0.00 0.00 0.00 3.58
2826 3832 0.729116 GACAATGCCGACCTGATGTG 59.271 55.000 0.00 0.00 0.00 3.21
2827 3833 0.740868 CGACAATGCCGACCTGATGT 60.741 55.000 0.00 0.00 0.00 3.06
2828 3834 0.740868 ACGACAATGCCGACCTGATG 60.741 55.000 0.00 0.00 0.00 3.07
2829 3835 0.821517 TACGACAATGCCGACCTGAT 59.178 50.000 0.00 0.00 0.00 2.90
2830 3836 0.172578 CTACGACAATGCCGACCTGA 59.827 55.000 0.00 0.00 0.00 3.86
2831 3837 0.172578 TCTACGACAATGCCGACCTG 59.827 55.000 0.00 0.00 0.00 4.00
2832 3838 0.892755 TTCTACGACAATGCCGACCT 59.107 50.000 0.00 0.00 0.00 3.85
2833 3839 1.659098 CTTTCTACGACAATGCCGACC 59.341 52.381 0.00 0.00 0.00 4.79
2834 3840 2.344741 GTCTTTCTACGACAATGCCGAC 59.655 50.000 0.00 0.00 0.00 4.79
2835 3841 2.602878 GTCTTTCTACGACAATGCCGA 58.397 47.619 0.00 0.00 0.00 5.54
2836 3842 1.659098 GGTCTTTCTACGACAATGCCG 59.341 52.381 0.00 0.00 33.11 5.69
2837 3843 2.007608 GGGTCTTTCTACGACAATGCC 58.992 52.381 0.00 0.00 33.11 4.40
2838 3844 2.007608 GGGGTCTTTCTACGACAATGC 58.992 52.381 0.00 0.00 33.11 3.56
2839 3845 3.611766 AGGGGTCTTTCTACGACAATG 57.388 47.619 0.00 0.00 33.11 2.82
2840 3846 4.635699 AAAGGGGTCTTTCTACGACAAT 57.364 40.909 0.00 0.00 38.76 2.71
2845 3851 9.006839 ACTAATTTTTAAAGGGGTCTTTCTACG 57.993 33.333 0.00 0.00 41.82 3.51
2864 3871 8.829373 AGATGCCCTAAGAAATCAACTAATTT 57.171 30.769 0.00 0.00 0.00 1.82
2883 3890 3.056313 GCCAACGGCTGAAGATGCC 62.056 63.158 0.00 0.00 46.69 4.40
2884 3891 2.486966 GCCAACGGCTGAAGATGC 59.513 61.111 0.00 0.00 46.69 3.91
2894 3901 2.435693 TTTTTGGGGGTGCCAACGG 61.436 57.895 0.00 0.00 0.00 4.44
2895 3902 1.227409 GTTTTTGGGGGTGCCAACG 60.227 57.895 0.00 0.00 0.00 4.10
2896 3903 0.472044 ATGTTTTTGGGGGTGCCAAC 59.528 50.000 0.00 0.00 0.00 3.77
2897 3904 0.761802 GATGTTTTTGGGGGTGCCAA 59.238 50.000 0.00 0.00 0.00 4.52
2898 3905 0.399091 TGATGTTTTTGGGGGTGCCA 60.399 50.000 0.00 0.00 0.00 4.92
2899 3906 0.034756 GTGATGTTTTTGGGGGTGCC 59.965 55.000 0.00 0.00 0.00 5.01
2900 3907 0.034756 GGTGATGTTTTTGGGGGTGC 59.965 55.000 0.00 0.00 0.00 5.01
2901 3908 0.316841 CGGTGATGTTTTTGGGGGTG 59.683 55.000 0.00 0.00 0.00 4.61
2902 3909 0.186386 TCGGTGATGTTTTTGGGGGT 59.814 50.000 0.00 0.00 0.00 4.95
2903 3910 1.000394 GTTCGGTGATGTTTTTGGGGG 60.000 52.381 0.00 0.00 0.00 5.40
2904 3911 1.000394 GGTTCGGTGATGTTTTTGGGG 60.000 52.381 0.00 0.00 0.00 4.96
2905 3912 1.683917 TGGTTCGGTGATGTTTTTGGG 59.316 47.619 0.00 0.00 0.00 4.12
2906 3913 3.444703 TTGGTTCGGTGATGTTTTTGG 57.555 42.857 0.00 0.00 0.00 3.28
2907 3914 5.786401 TTTTTGGTTCGGTGATGTTTTTG 57.214 34.783 0.00 0.00 0.00 2.44
2926 3933 2.115427 CCCCCAAGACACCAACTTTTT 58.885 47.619 0.00 0.00 0.00 1.94
2927 3934 1.007842 ACCCCCAAGACACCAACTTTT 59.992 47.619 0.00 0.00 0.00 2.27
2928 3935 0.634465 ACCCCCAAGACACCAACTTT 59.366 50.000 0.00 0.00 0.00 2.66
2929 3936 0.185175 GACCCCCAAGACACCAACTT 59.815 55.000 0.00 0.00 0.00 2.66
2930 3937 0.991355 TGACCCCCAAGACACCAACT 60.991 55.000 0.00 0.00 0.00 3.16
2931 3938 0.112412 ATGACCCCCAAGACACCAAC 59.888 55.000 0.00 0.00 0.00 3.77
2932 3939 0.404040 GATGACCCCCAAGACACCAA 59.596 55.000 0.00 0.00 0.00 3.67
2933 3940 1.497309 GGATGACCCCCAAGACACCA 61.497 60.000 0.00 0.00 0.00 4.17
2934 3941 1.303282 GGATGACCCCCAAGACACC 59.697 63.158 0.00 0.00 0.00 4.16
2935 3942 1.078426 CGGATGACCCCCAAGACAC 60.078 63.158 0.00 0.00 0.00 3.67
2936 3943 2.297895 CCGGATGACCCCCAAGACA 61.298 63.158 0.00 0.00 0.00 3.41
2937 3944 2.590092 CCGGATGACCCCCAAGAC 59.410 66.667 0.00 0.00 0.00 3.01
2938 3945 3.407967 GCCGGATGACCCCCAAGA 61.408 66.667 5.05 0.00 0.00 3.02
2939 3946 4.856801 CGCCGGATGACCCCCAAG 62.857 72.222 5.05 0.00 0.00 3.61
2942 3949 2.047213 TATTTCGCCGGATGACCCCC 62.047 60.000 5.05 0.00 0.00 5.40
2943 3950 0.179040 TTATTTCGCCGGATGACCCC 60.179 55.000 5.05 0.00 0.00 4.95
2944 3951 1.602377 CTTTATTTCGCCGGATGACCC 59.398 52.381 5.05 0.00 0.00 4.46
2945 3952 2.544267 CTCTTTATTTCGCCGGATGACC 59.456 50.000 5.05 0.00 0.00 4.02
2946 3953 3.454375 TCTCTTTATTTCGCCGGATGAC 58.546 45.455 5.05 0.00 0.00 3.06
2947 3954 3.717707 CTCTCTTTATTTCGCCGGATGA 58.282 45.455 5.05 0.00 0.00 2.92
2948 3955 2.221981 GCTCTCTTTATTTCGCCGGATG 59.778 50.000 5.05 0.00 0.00 3.51
2949 3956 2.158957 TGCTCTCTTTATTTCGCCGGAT 60.159 45.455 5.05 0.00 0.00 4.18
2950 3957 1.206132 TGCTCTCTTTATTTCGCCGGA 59.794 47.619 5.05 0.00 0.00 5.14
2951 3958 1.651987 TGCTCTCTTTATTTCGCCGG 58.348 50.000 0.00 0.00 0.00 6.13
2952 3959 3.126831 AGATGCTCTCTTTATTTCGCCG 58.873 45.455 0.00 0.00 0.00 6.46
2953 3960 4.024472 GGAAGATGCTCTCTTTATTTCGCC 60.024 45.833 4.02 0.00 44.42 5.54
2954 3961 4.024472 GGGAAGATGCTCTCTTTATTTCGC 60.024 45.833 4.02 0.00 44.42 4.70
2955 3962 5.118990 TGGGAAGATGCTCTCTTTATTTCG 58.881 41.667 4.02 0.00 44.42 3.46
2956 3963 6.118852 ACTGGGAAGATGCTCTCTTTATTTC 58.881 40.000 4.02 0.00 44.42 2.17
2957 3964 6.072199 ACTGGGAAGATGCTCTCTTTATTT 57.928 37.500 4.02 0.00 44.42 1.40
2958 3965 5.190528 TGACTGGGAAGATGCTCTCTTTATT 59.809 40.000 4.02 0.00 44.42 1.40
2959 3966 4.718774 TGACTGGGAAGATGCTCTCTTTAT 59.281 41.667 4.02 0.00 44.42 1.40
2960 3967 4.081420 GTGACTGGGAAGATGCTCTCTTTA 60.081 45.833 4.02 0.00 44.42 1.85
2961 3968 2.909006 TGACTGGGAAGATGCTCTCTTT 59.091 45.455 4.02 0.00 44.42 2.52
2963 3970 1.830477 GTGACTGGGAAGATGCTCTCT 59.170 52.381 0.00 0.00 34.96 3.10
2964 3971 1.552337 TGTGACTGGGAAGATGCTCTC 59.448 52.381 0.00 0.00 0.00 3.20
2965 3972 1.277557 GTGTGACTGGGAAGATGCTCT 59.722 52.381 0.00 0.00 0.00 4.09
2966 3973 1.677217 GGTGTGACTGGGAAGATGCTC 60.677 57.143 0.00 0.00 0.00 4.26
2967 3974 0.326264 GGTGTGACTGGGAAGATGCT 59.674 55.000 0.00 0.00 0.00 3.79
2968 3975 0.326264 AGGTGTGACTGGGAAGATGC 59.674 55.000 0.00 0.00 0.00 3.91
2969 3976 1.625315 TGAGGTGTGACTGGGAAGATG 59.375 52.381 0.00 0.00 0.00 2.90
2970 3977 2.030027 TGAGGTGTGACTGGGAAGAT 57.970 50.000 0.00 0.00 0.00 2.40
2971 3978 1.902508 GATGAGGTGTGACTGGGAAGA 59.097 52.381 0.00 0.00 0.00 2.87
2972 3979 1.065854 GGATGAGGTGTGACTGGGAAG 60.066 57.143 0.00 0.00 0.00 3.46
2973 3980 0.984230 GGATGAGGTGTGACTGGGAA 59.016 55.000 0.00 0.00 0.00 3.97
2974 3981 0.909610 GGGATGAGGTGTGACTGGGA 60.910 60.000 0.00 0.00 0.00 4.37
2975 3982 1.200760 TGGGATGAGGTGTGACTGGG 61.201 60.000 0.00 0.00 0.00 4.45
2976 3983 0.692476 TTGGGATGAGGTGTGACTGG 59.308 55.000 0.00 0.00 0.00 4.00
2977 3984 1.947678 GCTTGGGATGAGGTGTGACTG 60.948 57.143 0.00 0.00 0.00 3.51
2978 3985 0.326264 GCTTGGGATGAGGTGTGACT 59.674 55.000 0.00 0.00 0.00 3.41
2979 3986 0.036732 TGCTTGGGATGAGGTGTGAC 59.963 55.000 0.00 0.00 0.00 3.67
2980 3987 0.770499 TTGCTTGGGATGAGGTGTGA 59.230 50.000 0.00 0.00 0.00 3.58
2981 3988 1.619654 TTTGCTTGGGATGAGGTGTG 58.380 50.000 0.00 0.00 0.00 3.82
2982 3989 2.242043 CTTTTGCTTGGGATGAGGTGT 58.758 47.619 0.00 0.00 0.00 4.16
2983 3990 2.242043 ACTTTTGCTTGGGATGAGGTG 58.758 47.619 0.00 0.00 0.00 4.00
2984 3991 2.683211 ACTTTTGCTTGGGATGAGGT 57.317 45.000 0.00 0.00 0.00 3.85
2985 3992 3.070015 ACAAACTTTTGCTTGGGATGAGG 59.930 43.478 1.49 0.00 41.79 3.86
2986 3993 4.053295 CACAAACTTTTGCTTGGGATGAG 58.947 43.478 1.49 0.00 41.79 2.90
2987 3994 3.703556 TCACAAACTTTTGCTTGGGATGA 59.296 39.130 1.49 0.00 41.79 2.92
2988 3995 4.053295 CTCACAAACTTTTGCTTGGGATG 58.947 43.478 1.49 0.00 37.31 3.51
2989 3996 3.070015 CCTCACAAACTTTTGCTTGGGAT 59.930 43.478 1.49 0.00 37.31 3.85
2990 3997 2.430332 CCTCACAAACTTTTGCTTGGGA 59.570 45.455 1.49 0.00 41.79 4.37
2991 3998 2.430332 TCCTCACAAACTTTTGCTTGGG 59.570 45.455 1.49 0.70 41.79 4.12
2992 3999 3.381272 TCTCCTCACAAACTTTTGCTTGG 59.619 43.478 1.49 2.24 41.79 3.61
2993 4000 4.637483 TCTCCTCACAAACTTTTGCTTG 57.363 40.909 1.49 0.00 41.79 4.01
2994 4001 5.360714 TCATTCTCCTCACAAACTTTTGCTT 59.639 36.000 1.49 0.00 41.79 3.91
2995 4002 4.889409 TCATTCTCCTCACAAACTTTTGCT 59.111 37.500 1.49 0.00 41.79 3.91
2996 4003 5.186996 TCATTCTCCTCACAAACTTTTGC 57.813 39.130 1.49 0.00 41.79 3.68
2997 4004 9.403110 CTTAATCATTCTCCTCACAAACTTTTG 57.597 33.333 0.00 0.00 43.62 2.44
2998 4005 9.136323 ACTTAATCATTCTCCTCACAAACTTTT 57.864 29.630 0.00 0.00 0.00 2.27
2999 4006 8.571336 CACTTAATCATTCTCCTCACAAACTTT 58.429 33.333 0.00 0.00 0.00 2.66
3000 4007 7.175641 CCACTTAATCATTCTCCTCACAAACTT 59.824 37.037 0.00 0.00 0.00 2.66
3001 4008 6.656693 CCACTTAATCATTCTCCTCACAAACT 59.343 38.462 0.00 0.00 0.00 2.66
3002 4009 6.127897 CCCACTTAATCATTCTCCTCACAAAC 60.128 42.308 0.00 0.00 0.00 2.93
3003 4010 5.945784 CCCACTTAATCATTCTCCTCACAAA 59.054 40.000 0.00 0.00 0.00 2.83
3004 4011 5.500234 CCCACTTAATCATTCTCCTCACAA 58.500 41.667 0.00 0.00 0.00 3.33
3005 4012 4.626287 GCCCACTTAATCATTCTCCTCACA 60.626 45.833 0.00 0.00 0.00 3.58
3006 4013 3.879892 GCCCACTTAATCATTCTCCTCAC 59.120 47.826 0.00 0.00 0.00 3.51
3007 4014 3.117888 GGCCCACTTAATCATTCTCCTCA 60.118 47.826 0.00 0.00 0.00 3.86
3008 4015 3.117888 TGGCCCACTTAATCATTCTCCTC 60.118 47.826 0.00 0.00 0.00 3.71
3009 4016 2.852449 TGGCCCACTTAATCATTCTCCT 59.148 45.455 0.00 0.00 0.00 3.69
3010 4017 3.297134 TGGCCCACTTAATCATTCTCC 57.703 47.619 0.00 0.00 0.00 3.71
3011 4018 4.526970 TCTTGGCCCACTTAATCATTCTC 58.473 43.478 0.00 0.00 0.00 2.87
3012 4019 4.591321 TCTTGGCCCACTTAATCATTCT 57.409 40.909 0.00 0.00 0.00 2.40
3013 4020 5.659440 TTTCTTGGCCCACTTAATCATTC 57.341 39.130 0.00 0.00 0.00 2.67
3014 4021 6.432403 TTTTTCTTGGCCCACTTAATCATT 57.568 33.333 0.00 0.00 0.00 2.57
3015 4022 5.046376 CCTTTTTCTTGGCCCACTTAATCAT 60.046 40.000 0.00 0.00 0.00 2.45
3016 4023 4.283212 CCTTTTTCTTGGCCCACTTAATCA 59.717 41.667 0.00 0.00 0.00 2.57
3017 4024 4.526650 TCCTTTTTCTTGGCCCACTTAATC 59.473 41.667 0.00 0.00 0.00 1.75
3018 4025 4.283467 GTCCTTTTTCTTGGCCCACTTAAT 59.717 41.667 0.00 0.00 0.00 1.40
3019 4026 3.639561 GTCCTTTTTCTTGGCCCACTTAA 59.360 43.478 0.00 0.00 0.00 1.85
3020 4027 3.227614 GTCCTTTTTCTTGGCCCACTTA 58.772 45.455 0.00 0.00 0.00 2.24
3021 4028 2.039418 GTCCTTTTTCTTGGCCCACTT 58.961 47.619 0.00 0.00 0.00 3.16
3022 4029 1.063266 TGTCCTTTTTCTTGGCCCACT 60.063 47.619 0.00 0.00 0.00 4.00
3023 4030 1.408969 TGTCCTTTTTCTTGGCCCAC 58.591 50.000 0.00 0.00 0.00 4.61
3024 4031 1.969923 CATGTCCTTTTTCTTGGCCCA 59.030 47.619 0.00 0.00 0.00 5.36
3025 4032 1.970640 ACATGTCCTTTTTCTTGGCCC 59.029 47.619 0.00 0.00 0.00 5.80
3026 4033 2.289010 CCACATGTCCTTTTTCTTGGCC 60.289 50.000 0.00 0.00 0.00 5.36
3027 4034 2.365293 ACCACATGTCCTTTTTCTTGGC 59.635 45.455 0.00 0.00 0.00 4.52
3028 4035 3.636300 TCACCACATGTCCTTTTTCTTGG 59.364 43.478 0.00 0.00 0.00 3.61
3029 4036 4.580167 TCTCACCACATGTCCTTTTTCTTG 59.420 41.667 0.00 0.00 0.00 3.02
3030 4037 4.580580 GTCTCACCACATGTCCTTTTTCTT 59.419 41.667 0.00 0.00 0.00 2.52
3031 4038 4.137543 GTCTCACCACATGTCCTTTTTCT 58.862 43.478 0.00 0.00 0.00 2.52
3032 4039 3.882888 TGTCTCACCACATGTCCTTTTTC 59.117 43.478 0.00 0.00 0.00 2.29
3033 4040 3.632145 GTGTCTCACCACATGTCCTTTTT 59.368 43.478 0.00 0.00 35.38 1.94
3034 4041 3.214328 GTGTCTCACCACATGTCCTTTT 58.786 45.455 0.00 0.00 35.38 2.27
3035 4042 2.806745 CGTGTCTCACCACATGTCCTTT 60.807 50.000 0.00 0.00 34.98 3.11
3036 4043 1.270305 CGTGTCTCACCACATGTCCTT 60.270 52.381 0.00 0.00 34.98 3.36
3037 4044 0.318441 CGTGTCTCACCACATGTCCT 59.682 55.000 0.00 0.00 34.98 3.85
3038 4045 0.317160 TCGTGTCTCACCACATGTCC 59.683 55.000 0.00 0.00 35.18 4.02
3039 4046 2.370281 ATCGTGTCTCACCACATGTC 57.630 50.000 0.00 0.00 35.18 3.06
3040 4047 2.688507 GAATCGTGTCTCACCACATGT 58.311 47.619 0.00 0.00 35.18 3.21
3041 4048 1.655597 CGAATCGTGTCTCACCACATG 59.344 52.381 0.00 0.00 34.98 3.21
3042 4049 1.996292 CGAATCGTGTCTCACCACAT 58.004 50.000 0.00 0.00 34.98 3.21
3043 4050 0.666274 GCGAATCGTGTCTCACCACA 60.666 55.000 4.07 0.00 34.98 4.17
3044 4051 1.352156 GGCGAATCGTGTCTCACCAC 61.352 60.000 4.07 0.00 0.00 4.16
3045 4052 1.080093 GGCGAATCGTGTCTCACCA 60.080 57.895 4.07 0.00 0.00 4.17
3046 4053 2.158959 CGGCGAATCGTGTCTCACC 61.159 63.158 0.00 0.00 0.00 4.02
3047 4054 0.731514 TTCGGCGAATCGTGTCTCAC 60.732 55.000 19.83 0.00 0.00 3.51
3048 4055 0.038983 TTTCGGCGAATCGTGTCTCA 60.039 50.000 24.33 1.49 0.00 3.27
3049 4056 0.365859 GTTTCGGCGAATCGTGTCTC 59.634 55.000 24.33 3.47 0.00 3.36
3050 4057 0.038526 AGTTTCGGCGAATCGTGTCT 60.039 50.000 24.33 11.64 0.00 3.41
3051 4058 0.788391 AAGTTTCGGCGAATCGTGTC 59.212 50.000 24.33 9.69 0.00 3.67
3052 4059 0.788391 GAAGTTTCGGCGAATCGTGT 59.212 50.000 24.33 12.84 0.00 4.49
3053 4060 0.094730 GGAAGTTTCGGCGAATCGTG 59.905 55.000 24.33 0.00 0.00 4.35
3054 4061 1.349259 CGGAAGTTTCGGCGAATCGT 61.349 55.000 24.33 20.11 0.00 3.73
3055 4062 1.343821 CGGAAGTTTCGGCGAATCG 59.656 57.895 24.33 16.95 0.00 3.34
3056 4063 1.060465 GCGGAAGTTTCGGCGAATC 59.940 57.895 24.33 21.92 42.30 2.52
3057 4064 3.174788 GCGGAAGTTTCGGCGAAT 58.825 55.556 24.33 8.76 42.30 3.34
3079 4086 3.732849 CTGGGGTCTCTTGGGGGC 61.733 72.222 0.00 0.00 0.00 5.80
3080 4087 3.732849 GCTGGGGTCTCTTGGGGG 61.733 72.222 0.00 0.00 0.00 5.40
3081 4088 4.101448 CGCTGGGGTCTCTTGGGG 62.101 72.222 0.00 0.00 0.00 4.96
3082 4089 4.785453 GCGCTGGGGTCTCTTGGG 62.785 72.222 0.00 0.00 0.00 4.12
3100 4107 0.528924 AAAATAGCGCCGGAAAACCC 59.471 50.000 5.05 0.00 0.00 4.11
3101 4108 1.200484 TCAAAATAGCGCCGGAAAACC 59.800 47.619 5.05 0.00 0.00 3.27
3102 4109 2.247637 GTCAAAATAGCGCCGGAAAAC 58.752 47.619 5.05 0.00 0.00 2.43
3103 4110 1.135916 CGTCAAAATAGCGCCGGAAAA 60.136 47.619 5.05 0.00 0.00 2.29
3104 4111 0.444651 CGTCAAAATAGCGCCGGAAA 59.555 50.000 5.05 0.00 0.00 3.13
3105 4112 0.671163 ACGTCAAAATAGCGCCGGAA 60.671 50.000 5.05 0.00 0.00 4.30
3106 4113 1.079681 ACGTCAAAATAGCGCCGGA 60.080 52.632 5.05 0.00 0.00 5.14
3107 4114 1.347221 GACGTCAAAATAGCGCCGG 59.653 57.895 11.55 0.00 0.00 6.13
3108 4115 1.082117 AGGACGTCAAAATAGCGCCG 61.082 55.000 18.91 0.00 0.00 6.46
3109 4116 0.373716 CAGGACGTCAAAATAGCGCC 59.626 55.000 18.91 0.00 0.00 6.53
3110 4117 0.373716 CCAGGACGTCAAAATAGCGC 59.626 55.000 18.91 0.00 0.00 5.92
3111 4118 1.006832 CCCAGGACGTCAAAATAGCG 58.993 55.000 18.91 0.00 0.00 4.26
3112 4119 1.379527 CCCCAGGACGTCAAAATAGC 58.620 55.000 18.91 0.00 0.00 2.97
3113 4120 2.038387 CCCCCAGGACGTCAAAATAG 57.962 55.000 18.91 0.80 33.47 1.73
3138 4145 1.512156 TTCGTCGAAAAAGGCCCAGC 61.512 55.000 4.91 0.00 0.00 4.85
3139 4146 0.948678 TTTCGTCGAAAAAGGCCCAG 59.051 50.000 17.73 0.00 0.00 4.45
3140 4147 1.335496 CTTTTCGTCGAAAAAGGCCCA 59.665 47.619 27.76 9.58 40.34 5.36
3141 4148 1.335810 ACTTTTCGTCGAAAAAGGCCC 59.664 47.619 27.76 0.00 46.05 5.80
3142 4149 2.381589 CACTTTTCGTCGAAAAAGGCC 58.618 47.619 27.76 0.00 46.05 5.19
3143 4150 1.779157 GCACTTTTCGTCGAAAAAGGC 59.221 47.619 27.76 27.03 46.05 4.35
3144 4151 2.381589 GGCACTTTTCGTCGAAAAAGG 58.618 47.619 27.76 23.04 46.05 3.11
3145 4152 2.034076 CGGCACTTTTCGTCGAAAAAG 58.966 47.619 27.76 23.53 46.79 2.27
3146 4153 1.397692 ACGGCACTTTTCGTCGAAAAA 59.602 42.857 27.76 15.28 40.34 1.94
3147 4154 1.004715 GACGGCACTTTTCGTCGAAAA 60.005 47.619 26.67 26.67 44.55 2.29
3148 4155 0.578211 GACGGCACTTTTCGTCGAAA 59.422 50.000 16.22 16.22 44.55 3.46
3149 4156 2.218934 GACGGCACTTTTCGTCGAA 58.781 52.632 2.90 2.90 44.55 3.71
3150 4157 3.926497 GACGGCACTTTTCGTCGA 58.074 55.556 0.00 0.00 44.55 4.20
3153 4160 1.663702 CTCGGACGGCACTTTTCGT 60.664 57.895 0.00 0.00 42.67 3.85
3154 4161 3.011760 GCTCGGACGGCACTTTTCG 62.012 63.158 0.00 0.00 0.00 3.46
3155 4162 2.677979 GGCTCGGACGGCACTTTTC 61.678 63.158 0.00 0.00 0.00 2.29
3156 4163 1.823169 TAGGCTCGGACGGCACTTTT 61.823 55.000 0.00 0.00 0.00 2.27
3157 4164 1.823169 TTAGGCTCGGACGGCACTTT 61.823 55.000 0.00 0.00 0.00 2.66
3158 4165 1.823169 TTTAGGCTCGGACGGCACTT 61.823 55.000 0.00 0.00 0.00 3.16
3159 4166 1.823169 TTTTAGGCTCGGACGGCACT 61.823 55.000 0.00 5.14 0.00 4.40
3160 4167 1.375013 TTTTAGGCTCGGACGGCAC 60.375 57.895 0.00 0.00 0.00 5.01
3161 4168 1.375013 GTTTTAGGCTCGGACGGCA 60.375 57.895 0.00 0.00 0.00 5.69
3162 4169 2.104859 GGTTTTAGGCTCGGACGGC 61.105 63.158 0.00 0.00 0.00 5.68
3163 4170 1.808390 CGGTTTTAGGCTCGGACGG 60.808 63.158 0.00 0.00 0.00 4.79
3164 4171 1.808390 CCGGTTTTAGGCTCGGACG 60.808 63.158 5.72 0.00 44.69 4.79
3165 4172 1.449070 CCCGGTTTTAGGCTCGGAC 60.449 63.158 12.64 0.00 44.69 4.79
3166 4173 2.983791 CCCGGTTTTAGGCTCGGA 59.016 61.111 12.64 0.00 44.69 4.55
3167 4174 2.822701 GCCCGGTTTTAGGCTCGG 60.823 66.667 0.00 4.70 46.14 4.63
3172 4179 2.494471 CCTTTTTAGGCCCGGTTTTAGG 59.506 50.000 0.00 0.00 0.00 2.69
3173 4180 3.057104 CACCTTTTTAGGCCCGGTTTTAG 60.057 47.826 0.00 0.00 0.00 1.85
3174 4181 2.892215 CACCTTTTTAGGCCCGGTTTTA 59.108 45.455 0.00 0.00 0.00 1.52
3175 4182 1.689813 CACCTTTTTAGGCCCGGTTTT 59.310 47.619 0.00 0.00 0.00 2.43
3176 4183 1.334160 CACCTTTTTAGGCCCGGTTT 58.666 50.000 0.00 0.00 0.00 3.27
3177 4184 0.186630 ACACCTTTTTAGGCCCGGTT 59.813 50.000 0.00 0.00 0.00 4.44
3178 4185 0.251033 GACACCTTTTTAGGCCCGGT 60.251 55.000 0.00 0.00 0.00 5.28
3179 4186 0.963856 GGACACCTTTTTAGGCCCGG 60.964 60.000 0.00 0.00 0.00 5.73
3180 4187 0.037734 AGGACACCTTTTTAGGCCCG 59.962 55.000 0.00 0.00 0.00 6.13
3181 4188 1.545841 CAGGACACCTTTTTAGGCCC 58.454 55.000 0.00 0.00 0.00 5.80
3182 4189 1.545841 CCAGGACACCTTTTTAGGCC 58.454 55.000 0.00 0.00 0.00 5.19
3183 4190 1.545841 CCCAGGACACCTTTTTAGGC 58.454 55.000 0.00 0.00 0.00 3.93
3184 4191 1.272480 CCCCCAGGACACCTTTTTAGG 60.272 57.143 0.00 0.00 33.47 2.69
3185 4192 2.215942 CCCCCAGGACACCTTTTTAG 57.784 55.000 0.00 0.00 33.47 1.85
3206 4213 2.840102 CTAGCCTCCCCAGGACGG 60.840 72.222 0.00 0.00 43.65 4.79
3207 4214 2.042843 ACTAGCCTCCCCAGGACG 60.043 66.667 0.00 0.00 43.65 4.79
3208 4215 2.066999 CCACTAGCCTCCCCAGGAC 61.067 68.421 0.00 0.00 43.65 3.85
3209 4216 2.243774 CTCCACTAGCCTCCCCAGGA 62.244 65.000 0.00 0.00 43.65 3.86
3210 4217 1.764054 CTCCACTAGCCTCCCCAGG 60.764 68.421 0.00 0.00 43.82 4.45
3211 4218 0.105246 ATCTCCACTAGCCTCCCCAG 60.105 60.000 0.00 0.00 0.00 4.45
3212 4219 0.399091 CATCTCCACTAGCCTCCCCA 60.399 60.000 0.00 0.00 0.00 4.96
3213 4220 1.763546 GCATCTCCACTAGCCTCCCC 61.764 65.000 0.00 0.00 0.00 4.81
3214 4221 0.762461 AGCATCTCCACTAGCCTCCC 60.762 60.000 0.00 0.00 0.00 4.30
3215 4222 0.678950 GAGCATCTCCACTAGCCTCC 59.321 60.000 0.00 0.00 0.00 4.30
3226 4233 7.127252 TACCTTTGACCGGTAAGAGCATCTC 62.127 48.000 17.11 0.00 39.43 2.75
3227 4234 5.359484 TACCTTTGACCGGTAAGAGCATCT 61.359 45.833 17.11 0.00 41.16 2.90
3228 4235 2.280628 CCTTTGACCGGTAAGAGCATC 58.719 52.381 17.11 0.00 0.00 3.91
3229 4236 1.628846 ACCTTTGACCGGTAAGAGCAT 59.371 47.619 17.11 0.00 31.69 3.79
3230 4237 1.053424 ACCTTTGACCGGTAAGAGCA 58.947 50.000 17.11 3.74 31.69 4.26
3231 4238 2.418334 CCTACCTTTGACCGGTAAGAGC 60.418 54.545 17.11 0.90 36.63 4.09
3232 4239 2.830321 ACCTACCTTTGACCGGTAAGAG 59.170 50.000 17.11 10.43 36.63 2.85
3233 4240 2.893424 ACCTACCTTTGACCGGTAAGA 58.107 47.619 17.11 0.00 36.63 2.10
3234 4241 3.007182 TCAACCTACCTTTGACCGGTAAG 59.993 47.826 7.34 8.88 36.63 2.34
3235 4242 2.971330 TCAACCTACCTTTGACCGGTAA 59.029 45.455 7.34 0.00 36.63 2.85
3236 4243 2.607499 TCAACCTACCTTTGACCGGTA 58.393 47.619 7.34 0.00 35.98 4.02
3237 4244 1.426751 TCAACCTACCTTTGACCGGT 58.573 50.000 6.92 6.92 38.55 5.28
3238 4245 2.224450 ACTTCAACCTACCTTTGACCGG 60.224 50.000 0.00 0.00 32.65 5.28
3253 4260 1.825090 CCACATGGCTAGCACTTCAA 58.175 50.000 18.24 0.00 0.00 2.69
3312 4319 3.243602 ACGGCCAAAAACTCGCTAATTTT 60.244 39.130 2.24 0.00 0.00 1.82
3351 4358 8.196771 ACAAAATCAAGTTAAGAGTGAAATGCA 58.803 29.630 0.00 0.00 0.00 3.96
3453 4461 1.338973 ACGAACACGTAGAGGCAAAGA 59.661 47.619 0.00 0.00 38.51 2.52
3493 4501 1.067212 GTACTTCCGCGTGATGAGGAT 59.933 52.381 4.92 0.00 46.70 3.24
4460 7273 3.023832 CCCTGACACCAAAACTCAAGTT 58.976 45.455 0.00 0.00 40.50 2.66
4475 7288 2.496899 TTCATTTCCAGAGCCCTGAC 57.503 50.000 0.00 0.00 43.02 3.51
4478 7291 2.684927 CGGATTTCATTTCCAGAGCCCT 60.685 50.000 0.00 0.00 32.45 5.19
4558 7371 2.268107 ACCCCTAAATACAACCCGTCA 58.732 47.619 0.00 0.00 0.00 4.35
4590 7720 3.431626 GGTCACCCAAAAAGGAAAAGGTG 60.432 47.826 0.00 0.00 44.91 4.00
4593 7723 2.223947 CGGGTCACCCAAAAAGGAAAAG 60.224 50.000 15.17 0.00 45.83 2.27
4632 7765 1.623311 TGTTCAGACGGTCCATGATGT 59.377 47.619 4.14 0.00 0.00 3.06
4633 7766 2.274437 CTGTTCAGACGGTCCATGATG 58.726 52.381 4.14 0.00 0.00 3.07
4639 7772 2.432628 CGGCTGTTCAGACGGTCC 60.433 66.667 18.84 2.33 36.53 4.46
4648 7781 2.877691 GCCATCCAACGGCTGTTC 59.122 61.111 8.28 0.00 46.56 3.18
4710 7843 1.446445 CCATGTTACGAACGGGCGA 60.446 57.895 6.19 0.00 34.83 5.54
4738 7871 3.271729 TCGTGTTACAAAGCCTTGAACA 58.728 40.909 1.09 5.66 36.33 3.18
4808 7943 6.806249 CACATAAACCACGTTGCAATAGAAAT 59.194 34.615 0.59 0.00 0.00 2.17
4813 7948 3.366476 GGCACATAAACCACGTTGCAATA 60.366 43.478 0.59 0.00 0.00 1.90
4847 7982 0.250727 GTAGCAAAGGACAGGTGGCA 60.251 55.000 0.00 0.00 0.00 4.92
4911 8046 2.224161 GGACTTGTGTGAGAGTTCAGCT 60.224 50.000 0.00 0.00 32.98 4.24
4928 8063 3.681835 GCGACGAGGTGTGGGACT 61.682 66.667 0.00 0.00 0.00 3.85
4942 8077 1.069978 TCACAAAGGACATGACAGCGA 59.930 47.619 0.00 0.00 0.00 4.93
4944 8079 2.221169 TGTCACAAAGGACATGACAGC 58.779 47.619 0.00 0.00 45.89 4.40
4988 8123 1.679139 CTTGTTTGTGTGGGAGCTCA 58.321 50.000 17.19 0.00 0.00 4.26
4996 8131 0.592247 GAGGCGTGCTTGTTTGTGTG 60.592 55.000 0.00 0.00 0.00 3.82
5026 8161 5.816919 ACACAAACCATACTTCAAAAGACG 58.183 37.500 0.00 0.00 0.00 4.18
5030 8165 5.578727 GCACAACACAAACCATACTTCAAAA 59.421 36.000 0.00 0.00 0.00 2.44
5035 8170 4.681744 CAAGCACAACACAAACCATACTT 58.318 39.130 0.00 0.00 0.00 2.24
5037 8172 2.794350 GCAAGCACAACACAAACCATAC 59.206 45.455 0.00 0.00 0.00 2.39
5050 8185 0.754587 TGACCCATGTTGCAAGCACA 60.755 50.000 0.00 0.00 0.00 4.57
5067 8202 3.342719 TCGGCTAAGATTTGCAACATGA 58.657 40.909 0.00 0.00 0.00 3.07
5102 8237 3.398134 CATCCGATTCCTCGCGCG 61.398 66.667 26.76 26.76 43.66 6.86
5106 8241 1.069765 CCCACCATCCGATTCCTCG 59.930 63.158 0.00 0.00 44.62 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.