Multiple sequence alignment - TraesCS4D01G121400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G121400 chr4D 100.000 5310 0 0 1 5310 102410564 102405255 0.000000e+00 9806.0
1 TraesCS4D01G121400 chr4D 78.400 250 37 12 4526 4765 503538888 503539130 4.290000e-31 147.0
2 TraesCS4D01G121400 chr4D 100.000 50 0 0 3184 3233 102407333 102407284 5.660000e-15 93.5
3 TraesCS4D01G121400 chr4D 100.000 50 0 0 3232 3281 102407381 102407332 5.660000e-15 93.5
4 TraesCS4D01G121400 chr4B 92.974 3302 135 23 1 3233 146693258 146689985 0.000000e+00 4723.0
5 TraesCS4D01G121400 chr4B 92.847 1454 53 20 3232 4649 146690034 146688596 0.000000e+00 2061.0
6 TraesCS4D01G121400 chr4B 91.558 154 12 1 5153 5306 146687229 146687077 1.500000e-50 211.0
7 TraesCS4D01G121400 chr4B 84.211 171 25 2 4556 4725 107777354 107777523 1.180000e-36 165.0
8 TraesCS4D01G121400 chr4A 96.578 2104 66 2 1136 3233 472613392 472615495 0.000000e+00 3482.0
9 TraesCS4D01G121400 chr4A 93.606 1783 63 11 3232 4997 472615446 472617194 0.000000e+00 2614.0
10 TraesCS4D01G121400 chr4A 88.806 1072 72 26 1 1059 472612110 472613146 0.000000e+00 1271.0
11 TraesCS4D01G121400 chr4A 87.959 1063 89 24 1 1058 472527341 472528369 0.000000e+00 1218.0
12 TraesCS4D01G121400 chr4A 93.818 275 17 0 5036 5310 472617198 472617472 1.060000e-111 414.0
13 TraesCS4D01G121400 chr4A 82.065 184 27 6 4544 4725 516686307 516686486 9.210000e-33 152.0
14 TraesCS4D01G121400 chr4A 84.286 70 7 4 119 186 475909180 475909247 1.230000e-06 65.8
15 TraesCS4D01G121400 chr6A 82.990 194 25 7 4536 4725 27175735 27175924 9.150000e-38 169.0
16 TraesCS4D01G121400 chr3B 83.243 185 23 8 4544 4725 30482819 30482640 4.260000e-36 163.0
17 TraesCS4D01G121400 chr3A 82.967 182 29 2 4544 4725 22571299 22571120 4.260000e-36 163.0
18 TraesCS4D01G121400 chr7A 79.621 211 33 10 4558 4765 40132394 40132597 5.540000e-30 143.0
19 TraesCS4D01G121400 chr2B 80.100 201 31 9 4567 4765 759761275 759761082 1.990000e-29 141.0
20 TraesCS4D01G121400 chr6B 86.441 59 8 0 133 191 8233280 8233338 1.230000e-06 65.8
21 TraesCS4D01G121400 chr6B 84.375 64 6 4 125 186 688122007 688121946 5.740000e-05 60.2
22 TraesCS4D01G121400 chr5B 89.796 49 4 1 119 167 303919359 303919312 1.600000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G121400 chr4D 102405255 102410564 5309 True 3331.000000 9806 100.000000 1 5310 3 chr4D.!!$R1 5309
1 TraesCS4D01G121400 chr4B 146687077 146693258 6181 True 2331.666667 4723 92.459667 1 5306 3 chr4B.!!$R1 5305
2 TraesCS4D01G121400 chr4A 472612110 472617472 5362 False 1945.250000 3482 93.202000 1 5310 4 chr4A.!!$F4 5309
3 TraesCS4D01G121400 chr4A 472527341 472528369 1028 False 1218.000000 1218 87.959000 1 1058 1 chr4A.!!$F1 1057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 561 0.251354 CCCCTCACTGACATCACAGG 59.749 60.0 0.0 0.0 41.59 4.00 F
1666 1877 0.035056 CCGTTCTTGCTCCCAGGAAT 60.035 55.0 0.0 0.0 38.97 3.01 F
3206 3475 0.460311 CCTCCTAATGCCGTCTTCGT 59.540 55.0 0.0 0.0 35.01 3.85 F
3248 3517 0.394565 GCTGATCCTCCTAATGCCGT 59.605 55.0 0.0 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 2066 2.526873 ACACACTTCGAGGGGGCT 60.527 61.111 0.47 0.00 0.00 5.19 R
3229 3498 0.394565 ACGGCATTAGGAGGATCAGC 59.605 55.000 0.00 0.00 36.25 4.26 R
4165 4439 0.036732 AGCTTGAAGCATCCGGTCAA 59.963 50.000 20.45 2.42 45.56 3.18 R
5009 6555 0.179076 TCAGCCCACATCTATGCACG 60.179 55.000 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.451178 GCGGGATTAAGATCATAGGGCTA 59.549 47.826 0.00 0.00 33.77 3.93
81 82 4.156556 CAGAAGGGATACACAAACACATGG 59.843 45.833 0.00 0.00 39.74 3.66
102 103 4.054671 GGGATAGCTCAGATTCACGAAAG 58.945 47.826 0.00 0.00 0.00 2.62
109 110 4.569966 GCTCAGATTCACGAAAGATGATGT 59.430 41.667 0.00 0.00 0.00 3.06
177 178 9.733556 TTCACATAGAAGTTATTGGTGTATGTT 57.266 29.630 0.00 0.00 29.31 2.71
225 226 4.764679 AGTTATCACGGTGTTGTACGTA 57.235 40.909 8.17 0.00 42.04 3.57
245 246 7.120923 ACGTAAATTATCAGGTATGAGGTGT 57.879 36.000 0.00 0.00 39.29 4.16
247 249 6.984474 CGTAAATTATCAGGTATGAGGTGTGT 59.016 38.462 0.00 0.00 39.29 3.72
373 376 1.759445 CATCCCGATCCACTCAACTCT 59.241 52.381 0.00 0.00 0.00 3.24
381 384 5.221322 CCGATCCACTCAACTCTATGATCAA 60.221 44.000 0.00 0.00 0.00 2.57
404 407 2.057137 AGCTGTTCTTCAGTTTGGCA 57.943 45.000 0.00 0.00 45.23 4.92
417 420 5.000591 TCAGTTTGGCAGATTCGATAACAA 58.999 37.500 0.00 0.00 0.00 2.83
421 424 5.499139 TTGGCAGATTCGATAACAATTCC 57.501 39.130 0.00 0.00 0.00 3.01
422 425 4.522114 TGGCAGATTCGATAACAATTCCA 58.478 39.130 0.00 0.00 0.00 3.53
425 428 6.770303 TGGCAGATTCGATAACAATTCCAATA 59.230 34.615 0.00 0.00 0.00 1.90
470 476 7.065324 TGTCTTCAACCTAAACAACAACTACAG 59.935 37.037 0.00 0.00 0.00 2.74
473 479 8.967664 TTCAACCTAAACAACAACTACAGTAT 57.032 30.769 0.00 0.00 0.00 2.12
477 483 8.741603 ACCTAAACAACAACTACAGTATTTGT 57.258 30.769 9.89 9.89 43.96 2.83
553 559 1.841302 GCCCCCTCACTGACATCACA 61.841 60.000 0.00 0.00 0.00 3.58
555 561 0.251354 CCCCTCACTGACATCACAGG 59.749 60.000 0.00 0.00 41.59 4.00
557 563 1.349026 CCCTCACTGACATCACAGGTT 59.651 52.381 0.00 0.00 41.59 3.50
558 564 2.567169 CCCTCACTGACATCACAGGTTA 59.433 50.000 0.00 0.00 41.59 2.85
559 565 3.198635 CCCTCACTGACATCACAGGTTAT 59.801 47.826 0.00 0.00 41.59 1.89
560 566 4.405680 CCCTCACTGACATCACAGGTTATA 59.594 45.833 0.00 0.00 41.59 0.98
561 567 5.070981 CCCTCACTGACATCACAGGTTATAT 59.929 44.000 0.00 0.00 41.59 0.86
562 568 6.408548 CCCTCACTGACATCACAGGTTATATT 60.409 42.308 0.00 0.00 41.59 1.28
563 569 7.202001 CCCTCACTGACATCACAGGTTATATTA 60.202 40.741 0.00 0.00 41.59 0.98
564 570 8.204160 CCTCACTGACATCACAGGTTATATTAA 58.796 37.037 0.00 0.00 41.59 1.40
565 571 9.770097 CTCACTGACATCACAGGTTATATTAAT 57.230 33.333 0.00 0.00 41.59 1.40
585 591 7.797038 TTAATTACTTCCCTAAAATCCTCGC 57.203 36.000 0.00 0.00 0.00 5.03
650 673 0.817013 AAATCATGCCCGCATTCGTT 59.183 45.000 0.00 0.00 33.90 3.85
656 679 2.464459 GCCCGCATTCGTTCCTCAG 61.464 63.158 0.00 0.00 0.00 3.35
757 780 5.119588 CACGAGATTTGGAGCGTTAACTTTA 59.880 40.000 3.71 0.00 34.37 1.85
796 829 3.434637 TCGCTCACAAAAGAAAACAAGC 58.565 40.909 0.00 0.00 0.00 4.01
853 891 4.050852 AGAAAAACGAGTAACGACACCT 57.949 40.909 0.00 0.00 45.77 4.00
1018 1057 2.297597 CACTCCAACGTCTCTTTCTCCT 59.702 50.000 0.00 0.00 0.00 3.69
1149 1360 1.299926 GAGCGATGGCGACGGTAAT 60.300 57.895 7.69 0.00 46.35 1.89
1282 1493 4.753662 ACCGCCGACTCCCTGCTA 62.754 66.667 0.00 0.00 0.00 3.49
1300 1511 1.858739 TATGCCCCTCCAACGGCTTT 61.859 55.000 0.00 0.00 45.90 3.51
1348 1559 1.982395 CACCTACGTCCAGCCCTCA 60.982 63.158 0.00 0.00 0.00 3.86
1513 1724 3.717294 AACCCGGAGCCGCTCATT 61.717 61.111 21.76 7.53 38.24 2.57
1564 1775 1.301244 CATCAGGCCGGATTCCTCG 60.301 63.158 16.45 0.47 0.00 4.63
1666 1877 0.035056 CCGTTCTTGCTCCCAGGAAT 60.035 55.000 0.00 0.00 38.97 3.01
2122 2333 1.923395 AGATTTGGGGAGCGGGTCA 60.923 57.895 9.66 0.00 0.00 4.02
2282 2496 2.995258 GCTACATTGTGTTGCATTTGGG 59.005 45.455 10.74 0.00 45.86 4.12
2306 2520 3.358111 TTCGGATGTTGGAATTAGGCA 57.642 42.857 0.00 0.00 0.00 4.75
2368 2582 6.363882 TGTTAATTGACCATGCTCATCCATA 58.636 36.000 0.00 0.00 0.00 2.74
2857 3123 7.759489 TTCTGAATTGCTTAGGTTTACATGT 57.241 32.000 2.69 2.69 0.00 3.21
2858 3124 7.144722 TCTGAATTGCTTAGGTTTACATGTG 57.855 36.000 9.11 0.00 0.00 3.21
2969 3235 4.036852 CAGAGCTATCCAGTAACGATGACA 59.963 45.833 0.00 0.00 0.00 3.58
3015 3281 4.216687 ACCACGAAAGAAGACAGAGTCTAG 59.783 45.833 0.00 0.00 42.59 2.43
3080 3349 1.600957 CTAAATGGACTGATGGCAGCG 59.399 52.381 0.00 0.00 46.26 5.18
3092 3361 1.302192 GGCAGCGTTCCACTGGTTA 60.302 57.895 0.00 0.00 35.62 2.85
3201 3470 2.910688 TTGATCCTCCTAATGCCGTC 57.089 50.000 0.00 0.00 0.00 4.79
3202 3471 2.088104 TGATCCTCCTAATGCCGTCT 57.912 50.000 0.00 0.00 0.00 4.18
3203 3472 2.398588 TGATCCTCCTAATGCCGTCTT 58.601 47.619 0.00 0.00 0.00 3.01
3204 3473 2.365617 TGATCCTCCTAATGCCGTCTTC 59.634 50.000 0.00 0.00 0.00 2.87
3205 3474 0.744874 TCCTCCTAATGCCGTCTTCG 59.255 55.000 0.00 0.00 0.00 3.79
3206 3475 0.460311 CCTCCTAATGCCGTCTTCGT 59.540 55.000 0.00 0.00 35.01 3.85
3207 3476 1.134788 CCTCCTAATGCCGTCTTCGTT 60.135 52.381 0.00 0.00 35.01 3.85
3208 3477 2.618053 CTCCTAATGCCGTCTTCGTTT 58.382 47.619 0.00 0.00 35.01 3.60
3209 3478 3.000727 CTCCTAATGCCGTCTTCGTTTT 58.999 45.455 0.00 0.00 35.01 2.43
3210 3479 2.739913 TCCTAATGCCGTCTTCGTTTTG 59.260 45.455 0.00 0.00 35.01 2.44
3211 3480 2.482721 CCTAATGCCGTCTTCGTTTTGT 59.517 45.455 0.00 0.00 35.01 2.83
3212 3481 3.058501 CCTAATGCCGTCTTCGTTTTGTT 60.059 43.478 0.00 0.00 35.01 2.83
3213 3482 4.152759 CCTAATGCCGTCTTCGTTTTGTTA 59.847 41.667 0.00 0.00 35.01 2.41
3214 3483 4.759516 AATGCCGTCTTCGTTTTGTTAT 57.240 36.364 0.00 0.00 35.01 1.89
3215 3484 4.759516 ATGCCGTCTTCGTTTTGTTATT 57.240 36.364 0.00 0.00 35.01 1.40
3216 3485 3.879427 TGCCGTCTTCGTTTTGTTATTG 58.121 40.909 0.00 0.00 35.01 1.90
3217 3486 3.560481 TGCCGTCTTCGTTTTGTTATTGA 59.440 39.130 0.00 0.00 35.01 2.57
3218 3487 4.214545 TGCCGTCTTCGTTTTGTTATTGAT 59.785 37.500 0.00 0.00 35.01 2.57
3219 3488 5.151389 GCCGTCTTCGTTTTGTTATTGATT 58.849 37.500 0.00 0.00 35.01 2.57
3220 3489 5.627780 GCCGTCTTCGTTTTGTTATTGATTT 59.372 36.000 0.00 0.00 35.01 2.17
3221 3490 6.143278 GCCGTCTTCGTTTTGTTATTGATTTT 59.857 34.615 0.00 0.00 35.01 1.82
3222 3491 7.324135 GCCGTCTTCGTTTTGTTATTGATTTTA 59.676 33.333 0.00 0.00 35.01 1.52
3223 3492 8.624028 CCGTCTTCGTTTTGTTATTGATTTTAC 58.376 33.333 0.00 0.00 35.01 2.01
3224 3493 9.160576 CGTCTTCGTTTTGTTATTGATTTTACA 57.839 29.630 0.00 0.00 0.00 2.41
3226 3495 9.672086 TCTTCGTTTTGTTATTGATTTTACAGG 57.328 29.630 0.00 0.00 0.00 4.00
3227 3496 9.672086 CTTCGTTTTGTTATTGATTTTACAGGA 57.328 29.630 0.00 0.00 0.00 3.86
3229 3498 9.672086 TCGTTTTGTTATTGATTTTACAGGAAG 57.328 29.630 0.00 0.00 0.00 3.46
3230 3499 8.424731 CGTTTTGTTATTGATTTTACAGGAAGC 58.575 33.333 0.00 0.00 0.00 3.86
3231 3500 9.476202 GTTTTGTTATTGATTTTACAGGAAGCT 57.524 29.630 0.00 0.00 0.00 3.74
3232 3501 9.474920 TTTTGTTATTGATTTTACAGGAAGCTG 57.525 29.630 0.00 0.00 0.00 4.24
3233 3502 7.994425 TGTTATTGATTTTACAGGAAGCTGA 57.006 32.000 0.00 0.00 0.00 4.26
3234 3503 8.579850 TGTTATTGATTTTACAGGAAGCTGAT 57.420 30.769 0.00 0.00 0.00 2.90
3235 3504 8.677300 TGTTATTGATTTTACAGGAAGCTGATC 58.323 33.333 0.00 0.00 0.00 2.92
3236 3505 6.705863 ATTGATTTTACAGGAAGCTGATCC 57.294 37.500 0.00 0.00 39.96 3.36
3245 3514 2.777094 GGAAGCTGATCCTCCTAATGC 58.223 52.381 0.00 0.00 36.50 3.56
3246 3515 2.551938 GGAAGCTGATCCTCCTAATGCC 60.552 54.545 0.00 0.00 36.50 4.40
3247 3516 0.683973 AGCTGATCCTCCTAATGCCG 59.316 55.000 0.00 0.00 0.00 5.69
3248 3517 0.394565 GCTGATCCTCCTAATGCCGT 59.605 55.000 0.00 0.00 0.00 5.68
3880 4154 2.904866 GCCAACACCTTGTGCCGA 60.905 61.111 0.00 0.00 36.98 5.54
3891 4165 1.371337 TTGTGCCGAGAGATGCATGC 61.371 55.000 11.82 11.82 40.07 4.06
3928 4202 1.134521 GTGAACGAGGCCATGGATGTA 60.135 52.381 18.40 0.00 0.00 2.29
4078 4352 2.627945 GATGCGACCAAGGACAATGTA 58.372 47.619 0.00 0.00 0.00 2.29
4165 4439 3.471680 GGTCTCAGTTTCAGCAAAGAGT 58.528 45.455 0.00 0.00 0.00 3.24
4356 4631 4.700213 CAGTTATGAATGAAACCCCGTTCT 59.300 41.667 0.00 0.00 34.16 3.01
4394 4669 3.625853 TCTGGTTGTTGGAATTGTGTCA 58.374 40.909 0.00 0.00 0.00 3.58
4418 4712 9.569167 TCAAATATGTTGAACTTAGAGTCGTAG 57.431 33.333 0.00 0.00 0.00 3.51
4447 4741 2.433239 AGACAGGGTACGAGTTGTGTTT 59.567 45.455 0.00 0.00 0.00 2.83
4489 4783 8.945195 TTTCGGACCTCTTATATAATGTAGGA 57.055 34.615 18.58 4.26 0.00 2.94
4514 4808 2.918600 GACACACGATGTAACGTATGCA 59.081 45.455 0.00 0.00 43.13 3.96
4516 4810 3.366724 ACACACGATGTAACGTATGCAAG 59.633 43.478 0.00 0.00 43.13 4.01
4518 4812 1.931172 ACGATGTAACGTATGCAAGGC 59.069 47.619 0.00 0.00 44.72 4.35
4519 4813 1.260561 CGATGTAACGTATGCAAGGCC 59.739 52.381 0.00 0.00 0.00 5.19
4520 4814 1.602377 GATGTAACGTATGCAAGGCCC 59.398 52.381 0.00 0.00 0.00 5.80
4575 4883 3.854286 CGGTTTTGTAGCGGTATCATC 57.146 47.619 0.00 0.00 43.74 2.92
4581 4889 1.611977 TGTAGCGGTATCATCGGAAGG 59.388 52.381 0.00 0.00 0.00 3.46
4587 4895 0.667792 GTATCATCGGAAGGAGCGCC 60.668 60.000 2.29 0.00 0.00 6.53
4597 4905 1.618837 GAAGGAGCGCCCATAGTCATA 59.381 52.381 15.92 0.00 37.41 2.15
4655 6201 4.338012 ACAAATCTTGATGTCATGCCTCA 58.662 39.130 0.00 0.00 0.00 3.86
4689 6235 3.243771 GGTCCTCGGTGAATCGACAATAT 60.244 47.826 0.00 0.00 35.18 1.28
4690 6236 3.736252 GTCCTCGGTGAATCGACAATATG 59.264 47.826 0.00 0.00 35.18 1.78
4694 6240 4.188462 TCGGTGAATCGACAATATGCTTT 58.812 39.130 0.00 0.00 33.92 3.51
4731 6277 6.933521 ACAAGTGATATCATGAGCATAAGGTC 59.066 38.462 9.02 0.00 42.53 3.85
4838 6384 1.066143 AGCTTGGTACGATGGGTCAAG 60.066 52.381 0.00 0.00 38.18 3.02
4860 6406 2.348998 CTGGAGCGGCTTGGAGTT 59.651 61.111 2.97 0.00 0.00 3.01
4865 6411 1.078143 AGCGGCTTGGAGTTGGATC 60.078 57.895 0.00 0.00 0.00 3.36
4875 6421 1.209275 GAGTTGGATCGATCGTGCGG 61.209 60.000 18.81 0.00 0.00 5.69
4877 6423 3.363844 TTGGATCGATCGTGCGGCA 62.364 57.895 18.81 0.00 0.00 5.69
4904 6450 6.128729 CGGCATGTTTTTGTCTGAAATTTTC 58.871 36.000 2.05 2.05 0.00 2.29
4973 6519 0.178068 GGCGTGCTCAGGAAGGAATA 59.822 55.000 0.00 0.00 0.00 1.75
4998 6544 4.189188 GCATGCAGCGAAGGCCAG 62.189 66.667 14.21 0.00 41.24 4.85
4999 6545 4.189188 CATGCAGCGAAGGCCAGC 62.189 66.667 5.01 7.77 41.24 4.85
5001 6547 4.953010 TGCAGCGAAGGCCAGCAA 62.953 61.111 17.96 3.04 44.47 3.91
5002 6548 4.410743 GCAGCGAAGGCCAGCAAC 62.411 66.667 17.96 7.34 41.24 4.17
5003 6549 2.979676 CAGCGAAGGCCAGCAACA 60.980 61.111 17.96 0.00 41.24 3.33
5004 6550 2.203337 AGCGAAGGCCAGCAACAA 60.203 55.556 17.96 0.00 41.24 2.83
5005 6551 1.604593 AGCGAAGGCCAGCAACAAT 60.605 52.632 17.96 0.00 41.24 2.71
5006 6552 0.322456 AGCGAAGGCCAGCAACAATA 60.322 50.000 17.96 0.00 41.24 1.90
5007 6553 0.099436 GCGAAGGCCAGCAACAATAG 59.901 55.000 5.01 0.00 0.00 1.73
5008 6554 0.734889 CGAAGGCCAGCAACAATAGG 59.265 55.000 5.01 0.00 0.00 2.57
5009 6555 0.457443 GAAGGCCAGCAACAATAGGC 59.543 55.000 5.01 0.00 46.28 3.93
5011 6557 3.590824 GCCAGCAACAATAGGCGT 58.409 55.556 0.00 0.00 37.41 5.68
5012 6558 1.137404 GCCAGCAACAATAGGCGTG 59.863 57.895 0.00 0.00 37.41 5.34
5013 6559 1.137404 CCAGCAACAATAGGCGTGC 59.863 57.895 0.00 0.00 34.54 5.34
5014 6560 1.585267 CCAGCAACAATAGGCGTGCA 61.585 55.000 0.00 0.00 34.54 4.57
5015 6561 0.452987 CAGCAACAATAGGCGTGCAT 59.547 50.000 0.00 0.00 34.54 3.96
5016 6562 1.670295 CAGCAACAATAGGCGTGCATA 59.330 47.619 0.00 0.00 34.54 3.14
5017 6563 1.942657 AGCAACAATAGGCGTGCATAG 59.057 47.619 0.00 0.00 34.54 2.23
5018 6564 1.939934 GCAACAATAGGCGTGCATAGA 59.060 47.619 0.00 0.00 0.00 1.98
5019 6565 2.549754 GCAACAATAGGCGTGCATAGAT 59.450 45.455 0.00 0.00 0.00 1.98
5020 6566 3.607775 GCAACAATAGGCGTGCATAGATG 60.608 47.826 0.00 0.00 0.00 2.90
5021 6567 3.475566 ACAATAGGCGTGCATAGATGT 57.524 42.857 0.00 0.00 0.00 3.06
5022 6568 3.133691 ACAATAGGCGTGCATAGATGTG 58.866 45.455 6.86 0.00 0.00 3.21
5023 6569 2.462456 ATAGGCGTGCATAGATGTGG 57.538 50.000 0.00 0.00 0.00 4.17
5024 6570 0.392706 TAGGCGTGCATAGATGTGGG 59.607 55.000 0.00 0.00 0.00 4.61
5025 6571 2.546494 GGCGTGCATAGATGTGGGC 61.546 63.158 0.00 0.00 0.00 5.36
5026 6572 1.524621 GCGTGCATAGATGTGGGCT 60.525 57.895 0.00 0.00 0.00 5.19
5027 6573 1.779025 GCGTGCATAGATGTGGGCTG 61.779 60.000 0.00 0.00 0.00 4.85
5028 6574 0.179076 CGTGCATAGATGTGGGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
5029 6575 1.303309 GTGCATAGATGTGGGCTGAC 58.697 55.000 0.00 0.00 0.00 3.51
5030 6576 0.181114 TGCATAGATGTGGGCTGACC 59.819 55.000 0.00 0.00 40.81 4.02
5031 6577 0.882042 GCATAGATGTGGGCTGACCG 60.882 60.000 0.00 0.00 44.64 4.79
5032 6578 0.250038 CATAGATGTGGGCTGACCGG 60.250 60.000 0.00 0.00 44.64 5.28
5033 6579 0.398522 ATAGATGTGGGCTGACCGGA 60.399 55.000 9.46 0.00 44.64 5.14
5034 6580 1.043116 TAGATGTGGGCTGACCGGAG 61.043 60.000 9.46 0.00 44.64 4.63
5076 6622 5.105351 TCGAGGCTACTCAAGATTGAATTCA 60.105 40.000 3.38 3.38 44.17 2.57
5096 6642 9.604626 GAATTCAACACTTCTATTCAGACTTTG 57.395 33.333 0.00 0.00 0.00 2.77
5100 6646 7.869937 TCAACACTTCTATTCAGACTTTGAGAG 59.130 37.037 0.00 0.00 37.07 3.20
5111 6657 5.072329 TCAGACTTTGAGAGAGAATTTGGGT 59.928 40.000 0.00 0.00 0.00 4.51
5117 6663 5.620738 TGAGAGAGAATTTGGGTATCCAG 57.379 43.478 0.00 0.00 45.04 3.86
5287 6833 7.385267 AGCAACATCATAAAGCAAAAATGGTA 58.615 30.769 0.00 0.00 0.00 3.25
5306 6852 2.315925 ATCGGATGTTGAACAGCGAT 57.684 45.000 7.53 10.54 34.89 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.503714 TCCCTTCTGTTTTAGCCCTATG 57.496 45.455 0.00 0.00 0.00 2.23
54 55 5.654650 TGTGTTTGTGTATCCCTTCTGTTTT 59.345 36.000 0.00 0.00 0.00 2.43
81 82 4.938080 TCTTTCGTGAATCTGAGCTATCC 58.062 43.478 0.00 0.00 0.00 2.59
102 103 9.778741 TTGACCTAATATGTTAAGGACATCATC 57.221 33.333 0.00 0.00 45.88 2.92
109 110 7.388437 ACAACGTTGACCTAATATGTTAAGGA 58.612 34.615 33.66 0.00 0.00 3.36
153 154 9.988350 GAAACATACACCAATAACTTCTATGTG 57.012 33.333 0.00 0.00 0.00 3.21
197 198 1.067354 ACACCGTGATAACTTCGACCC 60.067 52.381 5.28 0.00 0.00 4.46
225 226 9.561069 GATTACACACCTCATACCTGATAATTT 57.439 33.333 0.00 0.00 0.00 1.82
290 292 1.552337 AGATGTGTTGTCTCGCTCCAT 59.448 47.619 0.00 0.00 0.00 3.41
342 344 1.409427 GATCGGGATGTCGAGTCCTTT 59.591 52.381 14.55 2.75 42.69 3.11
345 347 1.107538 TGGATCGGGATGTCGAGTCC 61.108 60.000 8.02 8.02 42.69 3.85
425 428 8.455682 TGAAGACAACTCGTTTTAAATCTGTTT 58.544 29.630 0.00 0.00 0.00 2.83
470 476 6.584185 ACCAAACCATCCACTAACAAATAC 57.416 37.500 0.00 0.00 0.00 1.89
473 479 4.100189 CCAACCAAACCATCCACTAACAAA 59.900 41.667 0.00 0.00 0.00 2.83
477 483 2.158385 AGCCAACCAAACCATCCACTAA 60.158 45.455 0.00 0.00 0.00 2.24
559 565 9.498176 GCGAGGATTTTAGGGAAGTAATTAATA 57.502 33.333 0.00 0.00 0.00 0.98
560 566 8.218488 AGCGAGGATTTTAGGGAAGTAATTAAT 58.782 33.333 0.00 0.00 0.00 1.40
561 567 7.571025 AGCGAGGATTTTAGGGAAGTAATTAA 58.429 34.615 0.00 0.00 0.00 1.40
562 568 7.133133 AGCGAGGATTTTAGGGAAGTAATTA 57.867 36.000 0.00 0.00 0.00 1.40
563 569 6.002653 AGCGAGGATTTTAGGGAAGTAATT 57.997 37.500 0.00 0.00 0.00 1.40
564 570 5.632034 AGCGAGGATTTTAGGGAAGTAAT 57.368 39.130 0.00 0.00 0.00 1.89
565 571 6.549433 TTAGCGAGGATTTTAGGGAAGTAA 57.451 37.500 0.00 0.00 0.00 2.24
566 572 6.549433 TTTAGCGAGGATTTTAGGGAAGTA 57.451 37.500 0.00 0.00 0.00 2.24
567 573 5.431179 TTTAGCGAGGATTTTAGGGAAGT 57.569 39.130 0.00 0.00 0.00 3.01
568 574 6.542370 TGATTTTAGCGAGGATTTTAGGGAAG 59.458 38.462 0.00 0.00 0.00 3.46
569 575 6.419791 TGATTTTAGCGAGGATTTTAGGGAA 58.580 36.000 0.00 0.00 0.00 3.97
570 576 5.996644 TGATTTTAGCGAGGATTTTAGGGA 58.003 37.500 0.00 0.00 0.00 4.20
571 577 6.294176 CCATGATTTTAGCGAGGATTTTAGGG 60.294 42.308 0.00 0.00 0.00 3.53
572 578 6.263168 ACCATGATTTTAGCGAGGATTTTAGG 59.737 38.462 0.00 0.00 0.00 2.69
573 579 7.134815 CACCATGATTTTAGCGAGGATTTTAG 58.865 38.462 0.00 0.00 0.00 1.85
574 580 6.601613 ACACCATGATTTTAGCGAGGATTTTA 59.398 34.615 0.00 0.00 0.00 1.52
575 581 5.418840 ACACCATGATTTTAGCGAGGATTTT 59.581 36.000 0.00 0.00 0.00 1.82
576 582 4.949856 ACACCATGATTTTAGCGAGGATTT 59.050 37.500 0.00 0.00 0.00 2.17
577 583 4.526970 ACACCATGATTTTAGCGAGGATT 58.473 39.130 0.00 0.00 0.00 3.01
578 584 4.156455 ACACCATGATTTTAGCGAGGAT 57.844 40.909 0.00 0.00 0.00 3.24
579 585 3.627395 ACACCATGATTTTAGCGAGGA 57.373 42.857 0.00 0.00 0.00 3.71
580 586 4.188462 TGTACACCATGATTTTAGCGAGG 58.812 43.478 0.00 0.00 0.00 4.63
581 587 5.991328 ATGTACACCATGATTTTAGCGAG 57.009 39.130 0.00 0.00 30.69 5.03
582 588 7.851387 TTAATGTACACCATGATTTTAGCGA 57.149 32.000 0.00 0.00 32.82 4.93
624 647 1.226660 CGGGCATGATTTCGGCAAC 60.227 57.895 0.00 0.00 0.00 4.17
650 673 0.536460 GGGACGGTTTTTGCTGAGGA 60.536 55.000 0.00 0.00 0.00 3.71
656 679 2.732016 GGGTGGGACGGTTTTTGC 59.268 61.111 0.00 0.00 0.00 3.68
770 803 5.406649 TGTTTTCTTTTGTGAGCGAATTGT 58.593 33.333 0.00 0.00 0.00 2.71
815 853 3.822594 TTCTTTCACGCGCACATTTAT 57.177 38.095 5.73 0.00 0.00 1.40
853 891 0.824109 AATACTCGCTGCCTGTGCTA 59.176 50.000 0.00 0.00 38.71 3.49
1018 1057 3.041946 GAGGGATTTGAGGAGCCTAGAA 58.958 50.000 0.00 0.00 0.00 2.10
1300 1511 1.077357 GTCGGAGAGCTGGAGGAGA 60.077 63.158 0.00 0.00 36.95 3.71
1501 1712 2.892425 CGGACAATGAGCGGCTCC 60.892 66.667 26.00 10.37 0.00 4.70
1604 1815 3.695606 ATCAGACGGTGGCGCACT 61.696 61.111 10.83 0.00 34.40 4.40
1704 1915 3.909258 GACGAGAACCGCCGCTTCA 62.909 63.158 0.00 0.00 43.32 3.02
1855 2066 2.526873 ACACACTTCGAGGGGGCT 60.527 61.111 0.47 0.00 0.00 5.19
1895 2106 2.726351 CCCTGCGGTTCTCCTCCTC 61.726 68.421 0.00 0.00 0.00 3.71
2044 2255 2.532715 TTGCTGCCCCCTTCTCCT 60.533 61.111 0.00 0.00 0.00 3.69
2122 2333 3.801997 CTCCCCGGCTTCATGGCT 61.802 66.667 0.00 0.00 39.32 4.75
2282 2496 5.163561 TGCCTAATTCCAACATCCGAAATTC 60.164 40.000 0.00 0.00 0.00 2.17
2306 2520 5.163205 TGGCAGATACCTACACAGCAATTAT 60.163 40.000 0.00 0.00 0.00 1.28
2368 2582 3.541242 TTCACATCCCCATTTGGTCTT 57.459 42.857 0.00 0.00 0.00 3.01
2676 2890 7.172875 TCAATAATTTTCCCGTTCGTCTACAAA 59.827 33.333 0.00 0.00 0.00 2.83
2686 2904 5.410067 CACAGCATCAATAATTTTCCCGTT 58.590 37.500 0.00 0.00 0.00 4.44
2687 2905 4.677779 GCACAGCATCAATAATTTTCCCGT 60.678 41.667 0.00 0.00 0.00 5.28
2688 2906 3.798337 GCACAGCATCAATAATTTTCCCG 59.202 43.478 0.00 0.00 0.00 5.14
2689 2907 4.757594 TGCACAGCATCAATAATTTTCCC 58.242 39.130 0.00 0.00 31.71 3.97
2820 3086 4.561606 GCAATTCAGAATAAAGCAGTGCAG 59.438 41.667 19.20 0.00 0.00 4.41
2857 3123 5.945191 TGCTCAGGTACATGAATTTCAATCA 59.055 36.000 11.87 0.00 0.00 2.57
2858 3124 6.441093 TGCTCAGGTACATGAATTTCAATC 57.559 37.500 11.87 0.00 0.00 2.67
2969 3235 1.980765 TGGCTTCTCATCAACAGAGGT 59.019 47.619 0.00 0.00 33.92 3.85
3015 3281 0.463620 TGTTTTTGCCTTCCCTGCAC 59.536 50.000 0.00 0.00 38.72 4.57
3092 3361 8.608844 ATCTTCGAAAGTTTATCTGAAACTGT 57.391 30.769 0.00 0.00 40.10 3.55
3150 3419 4.775440 TTGTTCGCAAAAGCAAATGAAG 57.225 36.364 0.00 0.00 33.58 3.02
3166 3435 8.800332 AGGAGGATCAATAAATGCATATTGTTC 58.200 33.333 17.65 17.60 41.75 3.18
3175 3444 5.392380 CGGCATTAGGAGGATCAATAAATGC 60.392 44.000 17.03 17.03 36.25 3.56
3201 3470 9.672086 TCCTGTAAAATCAATAACAAAACGAAG 57.328 29.630 0.00 0.00 0.00 3.79
3203 3472 9.672086 CTTCCTGTAAAATCAATAACAAAACGA 57.328 29.630 0.00 0.00 0.00 3.85
3204 3473 8.424731 GCTTCCTGTAAAATCAATAACAAAACG 58.575 33.333 0.00 0.00 0.00 3.60
3205 3474 9.476202 AGCTTCCTGTAAAATCAATAACAAAAC 57.524 29.630 0.00 0.00 0.00 2.43
3206 3475 9.474920 CAGCTTCCTGTAAAATCAATAACAAAA 57.525 29.630 0.00 0.00 34.31 2.44
3207 3476 8.855110 TCAGCTTCCTGTAAAATCAATAACAAA 58.145 29.630 0.00 0.00 40.09 2.83
3208 3477 8.402798 TCAGCTTCCTGTAAAATCAATAACAA 57.597 30.769 0.00 0.00 40.09 2.83
3209 3478 7.994425 TCAGCTTCCTGTAAAATCAATAACA 57.006 32.000 0.00 0.00 40.09 2.41
3210 3479 8.131731 GGATCAGCTTCCTGTAAAATCAATAAC 58.868 37.037 0.00 0.00 40.09 1.89
3211 3480 8.055181 AGGATCAGCTTCCTGTAAAATCAATAA 58.945 33.333 6.14 0.00 44.63 1.40
3212 3481 7.577303 AGGATCAGCTTCCTGTAAAATCAATA 58.423 34.615 6.14 0.00 44.63 1.90
3213 3482 6.430007 AGGATCAGCTTCCTGTAAAATCAAT 58.570 36.000 6.14 0.00 44.63 2.57
3214 3483 5.819991 AGGATCAGCTTCCTGTAAAATCAA 58.180 37.500 6.14 0.00 44.63 2.57
3215 3484 5.431765 GAGGATCAGCTTCCTGTAAAATCA 58.568 41.667 11.84 0.00 46.35 2.57
3216 3485 4.819088 GGAGGATCAGCTTCCTGTAAAATC 59.181 45.833 11.84 0.00 46.35 2.17
3217 3486 4.786425 GGAGGATCAGCTTCCTGTAAAAT 58.214 43.478 11.84 0.00 46.35 1.82
3218 3487 4.222124 GGAGGATCAGCTTCCTGTAAAA 57.778 45.455 11.84 0.00 46.35 1.52
3219 3488 3.914426 GGAGGATCAGCTTCCTGTAAA 57.086 47.619 11.84 0.00 46.35 2.01
3225 3494 2.551938 GGCATTAGGAGGATCAGCTTCC 60.552 54.545 0.00 0.00 42.88 3.46
3226 3495 2.777094 GGCATTAGGAGGATCAGCTTC 58.223 52.381 0.00 0.00 36.25 3.86
3227 3496 1.071385 CGGCATTAGGAGGATCAGCTT 59.929 52.381 0.00 0.00 36.25 3.74
3228 3497 0.683973 CGGCATTAGGAGGATCAGCT 59.316 55.000 0.00 0.00 36.25 4.24
3229 3498 0.394565 ACGGCATTAGGAGGATCAGC 59.605 55.000 0.00 0.00 36.25 4.26
3230 3499 1.967066 AGACGGCATTAGGAGGATCAG 59.033 52.381 0.00 0.00 36.25 2.90
3231 3500 2.088104 AGACGGCATTAGGAGGATCA 57.912 50.000 0.00 0.00 36.25 2.92
3232 3501 2.608261 CGAAGACGGCATTAGGAGGATC 60.608 54.545 0.00 0.00 35.72 3.36
3233 3502 1.341531 CGAAGACGGCATTAGGAGGAT 59.658 52.381 0.00 0.00 35.72 3.24
3234 3503 0.744874 CGAAGACGGCATTAGGAGGA 59.255 55.000 0.00 0.00 35.72 3.71
3235 3504 0.460311 ACGAAGACGGCATTAGGAGG 59.540 55.000 0.00 0.00 44.46 4.30
3236 3505 2.295253 AACGAAGACGGCATTAGGAG 57.705 50.000 0.00 0.00 44.46 3.69
3237 3506 2.739913 CAAAACGAAGACGGCATTAGGA 59.260 45.455 0.00 0.00 44.46 2.94
3238 3507 2.482721 ACAAAACGAAGACGGCATTAGG 59.517 45.455 0.00 0.00 44.46 2.69
3239 3508 3.806316 ACAAAACGAAGACGGCATTAG 57.194 42.857 0.00 0.00 44.46 1.73
3240 3509 5.866335 ATAACAAAACGAAGACGGCATTA 57.134 34.783 0.00 0.00 44.46 1.90
3241 3510 4.759516 ATAACAAAACGAAGACGGCATT 57.240 36.364 0.00 0.00 44.46 3.56
3242 3511 4.214545 TCAATAACAAAACGAAGACGGCAT 59.785 37.500 0.00 0.00 44.46 4.40
3243 3512 3.560481 TCAATAACAAAACGAAGACGGCA 59.440 39.130 0.00 0.00 44.46 5.69
3244 3513 4.136517 TCAATAACAAAACGAAGACGGC 57.863 40.909 0.00 0.00 44.46 5.68
3245 3514 7.617533 AAAATCAATAACAAAACGAAGACGG 57.382 32.000 0.00 0.00 44.46 4.79
3246 3515 9.160576 TGTAAAATCAATAACAAAACGAAGACG 57.839 29.630 0.00 0.00 45.75 4.18
3248 3517 9.672086 CCTGTAAAATCAATAACAAAACGAAGA 57.328 29.630 0.00 0.00 0.00 2.87
3880 4154 1.284198 AGAAACCAGGCATGCATCTCT 59.716 47.619 21.36 8.37 0.00 3.10
3891 4165 4.739716 CGTTCACAAATTTCAGAAACCAGG 59.260 41.667 0.00 0.00 0.00 4.45
3928 4202 1.494721 TCTTCAAACAGGTGGAAGCCT 59.505 47.619 0.00 0.00 38.29 4.58
4165 4439 0.036732 AGCTTGAAGCATCCGGTCAA 59.963 50.000 20.45 2.42 45.56 3.18
4356 4631 4.208746 ACCAGAAAACATAACCACGGAAA 58.791 39.130 0.00 0.00 0.00 3.13
4394 4669 9.355215 CACTACGACTCTAAGTTCAACATATTT 57.645 33.333 0.00 0.00 0.00 1.40
4418 4712 0.944311 CGTACCCTGTCTGCACACAC 60.944 60.000 0.00 0.00 0.00 3.82
4447 4741 6.154445 GTCCGAAATACAAGTGTTCTACTCA 58.846 40.000 0.00 0.00 39.18 3.41
4500 4794 1.602377 GGGCCTTGCATACGTTACATC 59.398 52.381 0.84 0.00 0.00 3.06
4554 4862 3.450578 GATGATACCGCTACAAAACCGA 58.549 45.455 0.00 0.00 0.00 4.69
4570 4878 2.423446 GGCGCTCCTTCCGATGAT 59.577 61.111 7.64 0.00 0.00 2.45
4575 4883 2.029666 CTATGGGCGCTCCTTCCG 59.970 66.667 3.94 0.00 36.20 4.30
4581 4889 0.969894 AGGTATGACTATGGGCGCTC 59.030 55.000 7.64 2.47 0.00 5.03
4587 4895 6.127758 GCTACATCTCAGAGGTATGACTATGG 60.128 46.154 0.00 0.00 28.61 2.74
4597 4905 2.756907 ACATGGCTACATCTCAGAGGT 58.243 47.619 0.00 0.00 34.35 3.85
4655 6201 1.679944 CCGAGGACCAAGCAATCACAT 60.680 52.381 0.00 0.00 0.00 3.21
4731 6277 1.213013 CTTCACGACCTCCAGACCG 59.787 63.158 0.00 0.00 0.00 4.79
4851 6397 1.212616 CGATCGATCCAACTCCAAGC 58.787 55.000 19.51 0.00 0.00 4.01
4860 6406 3.773262 CTGCCGCACGATCGATCCA 62.773 63.158 24.34 9.39 0.00 3.41
4875 6421 1.284297 GACAAAAACATGCCGCCTGC 61.284 55.000 0.00 0.00 41.77 4.85
4877 6423 0.314935 CAGACAAAAACATGCCGCCT 59.685 50.000 0.00 0.00 0.00 5.52
4904 6450 0.391661 CCCATCGGTTGGTCTCACTG 60.392 60.000 4.49 0.00 44.83 3.66
4944 6490 1.883084 GAGCACGCCGTAATCCAGG 60.883 63.158 0.00 0.00 0.00 4.45
4952 6498 4.379243 CCTTCCTGAGCACGCCGT 62.379 66.667 0.00 0.00 0.00 5.68
4987 6533 0.322456 TATTGTTGCTGGCCTTCGCT 60.322 50.000 3.32 0.00 34.44 4.93
4991 6537 1.315257 CGCCTATTGTTGCTGGCCTT 61.315 55.000 3.32 0.00 42.15 4.35
4997 6543 1.942657 CTATGCACGCCTATTGTTGCT 59.057 47.619 0.00 0.00 0.00 3.91
4998 6544 1.939934 TCTATGCACGCCTATTGTTGC 59.060 47.619 0.00 0.00 0.00 4.17
4999 6545 3.561310 ACATCTATGCACGCCTATTGTTG 59.439 43.478 0.00 0.00 0.00 3.33
5000 6546 3.561310 CACATCTATGCACGCCTATTGTT 59.439 43.478 0.00 0.00 0.00 2.83
5001 6547 3.133691 CACATCTATGCACGCCTATTGT 58.866 45.455 0.00 0.00 0.00 2.71
5002 6548 2.481568 CCACATCTATGCACGCCTATTG 59.518 50.000 0.00 0.00 0.00 1.90
5003 6549 2.550855 CCCACATCTATGCACGCCTATT 60.551 50.000 0.00 0.00 0.00 1.73
5004 6550 1.002430 CCCACATCTATGCACGCCTAT 59.998 52.381 0.00 0.00 0.00 2.57
5005 6551 0.392706 CCCACATCTATGCACGCCTA 59.607 55.000 0.00 0.00 0.00 3.93
5006 6552 1.146930 CCCACATCTATGCACGCCT 59.853 57.895 0.00 0.00 0.00 5.52
5007 6553 2.546494 GCCCACATCTATGCACGCC 61.546 63.158 0.00 0.00 0.00 5.68
5008 6554 1.524621 AGCCCACATCTATGCACGC 60.525 57.895 0.00 0.00 0.00 5.34
5009 6555 0.179076 TCAGCCCACATCTATGCACG 60.179 55.000 0.00 0.00 0.00 5.34
5010 6556 1.303309 GTCAGCCCACATCTATGCAC 58.697 55.000 0.00 0.00 0.00 4.57
5011 6557 0.181114 GGTCAGCCCACATCTATGCA 59.819 55.000 0.00 0.00 0.00 3.96
5012 6558 0.882042 CGGTCAGCCCACATCTATGC 60.882 60.000 0.00 0.00 0.00 3.14
5013 6559 0.250038 CCGGTCAGCCCACATCTATG 60.250 60.000 0.00 0.00 0.00 2.23
5014 6560 0.398522 TCCGGTCAGCCCACATCTAT 60.399 55.000 0.00 0.00 0.00 1.98
5015 6561 1.001120 TCCGGTCAGCCCACATCTA 59.999 57.895 0.00 0.00 0.00 1.98
5016 6562 2.284625 TCCGGTCAGCCCACATCT 60.285 61.111 0.00 0.00 0.00 2.90
5017 6563 2.187946 CTCCGGTCAGCCCACATC 59.812 66.667 0.00 0.00 0.00 3.06
5018 6564 3.402681 CCTCCGGTCAGCCCACAT 61.403 66.667 0.00 0.00 0.00 3.21
5025 6571 3.589654 TTCAAGCGCCTCCGGTCAG 62.590 63.158 2.29 0.00 45.59 3.51
5026 6572 3.171828 TTTCAAGCGCCTCCGGTCA 62.172 57.895 2.29 0.00 45.59 4.02
5027 6573 2.358247 TTTCAAGCGCCTCCGGTC 60.358 61.111 2.29 0.00 45.59 4.79
5029 6575 3.804193 GCTTTCAAGCGCCTCCGG 61.804 66.667 2.29 0.00 42.88 5.14
5047 6593 0.528017 CTTGAGTAGCCTCGACAGCA 59.472 55.000 5.55 0.00 40.85 4.41
5049 6595 3.129462 TCAATCTTGAGTAGCCTCGACAG 59.871 47.826 0.00 0.00 40.85 3.51
5054 6600 6.372659 TGTTGAATTCAATCTTGAGTAGCCTC 59.627 38.462 23.05 6.46 38.61 4.70
5055 6601 6.150140 GTGTTGAATTCAATCTTGAGTAGCCT 59.850 38.462 23.05 0.00 38.61 4.58
5076 6622 7.957002 TCTCTCAAAGTCTGAATAGAAGTGTT 58.043 34.615 0.00 0.00 34.01 3.32
5096 6642 5.622346 ACTGGATACCCAAATTCTCTCTC 57.378 43.478 0.00 0.00 42.98 3.20
5100 6646 6.292150 CCTAGAACTGGATACCCAAATTCTC 58.708 44.000 5.69 0.00 42.50 2.87
5270 6816 7.202526 ACATCCGATACCATTTTTGCTTTATG 58.797 34.615 0.00 0.00 0.00 1.90
5287 6833 1.935873 CATCGCTGTTCAACATCCGAT 59.064 47.619 16.31 16.31 40.54 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.