Multiple sequence alignment - TraesCS4D01G120800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G120800 chr4D 100.000 2644 0 0 1 2644 102107261 102104618 0.000000e+00 4883.0
1 TraesCS4D01G120800 chr4D 96.047 506 18 2 1 504 454983846 454984351 0.000000e+00 822.0
2 TraesCS4D01G120800 chr4D 95.850 506 19 1 1 504 25294891 25295396 0.000000e+00 817.0
3 TraesCS4D01G120800 chr4D 95.472 508 21 1 1 506 2980545 2981052 0.000000e+00 809.0
4 TraesCS4D01G120800 chr4D 98.592 71 1 0 2574 2644 67429402 67429472 2.760000e-25 126.0
5 TraesCS4D01G120800 chr4D 84.071 113 10 5 2535 2644 76832933 76832826 4.660000e-18 102.0
6 TraesCS4D01G120800 chr4B 94.282 1574 87 3 505 2077 551784870 551786441 0.000000e+00 2405.0
7 TraesCS4D01G120800 chr4B 93.774 1574 95 3 505 2077 551730262 551731833 0.000000e+00 2361.0
8 TraesCS4D01G120800 chr4B 96.875 32 1 0 2532 2563 16817776 16817807 1.000000e-03 54.7
9 TraesCS4D01G120800 chr6D 93.972 1576 90 4 505 2079 450906114 450907685 0.000000e+00 2379.0
10 TraesCS4D01G120800 chr6D 98.592 71 1 0 2574 2644 243439685 243439615 2.760000e-25 126.0
11 TraesCS4D01G120800 chr7B 93.758 1570 87 8 505 2073 150842269 150843828 0.000000e+00 2346.0
12 TraesCS4D01G120800 chr7B 98.592 71 1 0 2574 2644 601610154 601610084 2.760000e-25 126.0
13 TraesCS4D01G120800 chr7D 93.253 1571 103 3 505 2074 463975672 463974104 0.000000e+00 2311.0
14 TraesCS4D01G120800 chr7D 92.930 1570 105 2 505 2069 107722613 107721045 0.000000e+00 2279.0
15 TraesCS4D01G120800 chr7D 95.367 518 20 2 1 514 441507659 441507142 0.000000e+00 821.0
16 TraesCS4D01G120800 chr7D 95.833 504 21 0 1 504 502190824 502191327 0.000000e+00 815.0
17 TraesCS4D01G120800 chr7D 98.592 71 1 0 2574 2644 556249053 556248983 2.760000e-25 126.0
18 TraesCS4D01G120800 chr7D 91.954 87 3 3 2562 2644 588993481 588993567 4.620000e-23 119.0
19 TraesCS4D01G120800 chr7D 96.875 32 1 0 2532 2563 55080346 55080377 1.000000e-03 54.7
20 TraesCS4D01G120800 chr2D 93.099 1565 103 5 512 2073 469180880 469182442 0.000000e+00 2287.0
21 TraesCS4D01G120800 chr2D 96.245 506 17 1 1 504 642023328 642022823 0.000000e+00 828.0
22 TraesCS4D01G120800 chr2B 92.934 1571 103 6 505 2073 459480866 459479302 0.000000e+00 2279.0
23 TraesCS4D01G120800 chr5B 92.416 1569 110 3 505 2073 641300442 641298883 0.000000e+00 2230.0
24 TraesCS4D01G120800 chr5B 92.683 41 3 0 2531 2571 692383014 692382974 2.840000e-05 60.2
25 TraesCS4D01G120800 chr5B 94.595 37 1 1 2531 2567 489413778 489413743 3.680000e-04 56.5
26 TraesCS4D01G120800 chr5D 95.712 513 18 2 1 509 429791597 429791085 0.000000e+00 822.0
27 TraesCS4D01G120800 chr5D 95.669 508 19 2 1 505 330675454 330674947 0.000000e+00 813.0
28 TraesCS4D01G120800 chr5D 100.000 70 0 0 2575 2644 136951823 136951892 2.140000e-26 130.0
29 TraesCS4D01G120800 chr5D 92.105 38 1 2 2531 2567 44893747 44893711 5.000000e-03 52.8
30 TraesCS4D01G120800 chr1D 95.661 507 20 1 1 505 311917743 311917237 0.000000e+00 813.0
31 TraesCS4D01G120800 chrUn 100.000 70 0 0 2575 2644 100341387 100341456 2.140000e-26 130.0
32 TraesCS4D01G120800 chr6A 98.592 71 1 0 2574 2644 56238028 56237958 2.760000e-25 126.0
33 TraesCS4D01G120800 chr3D 92.857 42 1 2 2532 2573 119380463 119380424 2.840000e-05 60.2
34 TraesCS4D01G120800 chr7A 90.476 42 4 0 2532 2573 626988851 626988810 3.680000e-04 56.5
35 TraesCS4D01G120800 chr1B 92.500 40 1 2 2532 2571 144119697 144119660 3.680000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G120800 chr4D 102104618 102107261 2643 True 4883 4883 100.000 1 2644 1 chr4D.!!$R2 2643
1 TraesCS4D01G120800 chr4D 454983846 454984351 505 False 822 822 96.047 1 504 1 chr4D.!!$F4 503
2 TraesCS4D01G120800 chr4D 25294891 25295396 505 False 817 817 95.850 1 504 1 chr4D.!!$F2 503
3 TraesCS4D01G120800 chr4D 2980545 2981052 507 False 809 809 95.472 1 506 1 chr4D.!!$F1 505
4 TraesCS4D01G120800 chr4B 551784870 551786441 1571 False 2405 2405 94.282 505 2077 1 chr4B.!!$F3 1572
5 TraesCS4D01G120800 chr4B 551730262 551731833 1571 False 2361 2361 93.774 505 2077 1 chr4B.!!$F2 1572
6 TraesCS4D01G120800 chr6D 450906114 450907685 1571 False 2379 2379 93.972 505 2079 1 chr6D.!!$F1 1574
7 TraesCS4D01G120800 chr7B 150842269 150843828 1559 False 2346 2346 93.758 505 2073 1 chr7B.!!$F1 1568
8 TraesCS4D01G120800 chr7D 463974104 463975672 1568 True 2311 2311 93.253 505 2074 1 chr7D.!!$R3 1569
9 TraesCS4D01G120800 chr7D 107721045 107722613 1568 True 2279 2279 92.930 505 2069 1 chr7D.!!$R1 1564
10 TraesCS4D01G120800 chr7D 441507142 441507659 517 True 821 821 95.367 1 514 1 chr7D.!!$R2 513
11 TraesCS4D01G120800 chr7D 502190824 502191327 503 False 815 815 95.833 1 504 1 chr7D.!!$F2 503
12 TraesCS4D01G120800 chr2D 469180880 469182442 1562 False 2287 2287 93.099 512 2073 1 chr2D.!!$F1 1561
13 TraesCS4D01G120800 chr2D 642022823 642023328 505 True 828 828 96.245 1 504 1 chr2D.!!$R1 503
14 TraesCS4D01G120800 chr2B 459479302 459480866 1564 True 2279 2279 92.934 505 2073 1 chr2B.!!$R1 1568
15 TraesCS4D01G120800 chr5B 641298883 641300442 1559 True 2230 2230 92.416 505 2073 1 chr5B.!!$R2 1568
16 TraesCS4D01G120800 chr5D 429791085 429791597 512 True 822 822 95.712 1 509 1 chr5D.!!$R3 508
17 TraesCS4D01G120800 chr5D 330674947 330675454 507 True 813 813 95.669 1 505 1 chr5D.!!$R2 504
18 TraesCS4D01G120800 chr1D 311917237 311917743 506 True 813 813 95.661 1 505 1 chr1D.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 798 0.249911 AAGTTCGAGCACACCTCCAC 60.25 55.0 1.01 0.0 37.27 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2167 0.035534 ATATGTGTGCGCAAGGGACA 60.036 50.0 14.0 13.5 45.48 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 157 7.776933 TGATTTGATGAGACTAGTTGTATGC 57.223 36.000 0.00 0.00 0.00 3.14
320 325 4.691216 CAGTAGCGCTTCCTTCTAAAAAGT 59.309 41.667 18.68 0.00 0.00 2.66
398 403 1.511305 CAGTAGCGTGGGACGACAT 59.489 57.895 0.00 0.00 46.05 3.06
473 478 4.632153 CGCTACTGATAGGCAAAATACCT 58.368 43.478 0.00 0.00 41.57 3.08
560 565 1.532604 CCGTCTCCCAGTACACTGCA 61.533 60.000 3.75 0.00 42.47 4.41
565 570 1.071299 CCCAGTACACTGCAGCACA 59.929 57.895 15.27 0.00 42.47 4.57
580 585 1.899814 AGCACAACGGTCATTAGGAGA 59.100 47.619 0.00 0.00 0.00 3.71
581 586 2.301870 AGCACAACGGTCATTAGGAGAA 59.698 45.455 0.00 0.00 0.00 2.87
582 587 3.071479 GCACAACGGTCATTAGGAGAAA 58.929 45.455 0.00 0.00 0.00 2.52
600 605 7.793036 AGGAGAAAAGTAGTTCTTGTACTTGT 58.207 34.615 0.00 0.00 39.34 3.16
619 624 5.601313 ACTTGTACCACTTCTTCCTCTGTTA 59.399 40.000 0.00 0.00 0.00 2.41
653 658 4.360643 GCCTGATTCATGGCCCAA 57.639 55.556 0.00 0.00 43.11 4.12
669 674 3.305813 GGCCCAACGAATGATATCGACTA 60.306 47.826 3.47 0.00 45.48 2.59
793 798 0.249911 AAGTTCGAGCACACCTCCAC 60.250 55.000 1.01 0.00 37.27 4.02
989 994 4.382793 GGGTGAGTAAATATAGGGGCGATC 60.383 50.000 0.00 0.00 0.00 3.69
990 995 4.466726 GGTGAGTAAATATAGGGGCGATCT 59.533 45.833 0.00 0.00 0.00 2.75
1055 1062 4.036144 GCTCTTCAATAAGCCATGAACTCC 59.964 45.833 0.00 0.00 32.46 3.85
1139 1146 1.068417 CTCCCGACCGTTGACAACA 59.932 57.895 18.09 0.00 0.00 3.33
1175 1182 0.107214 TTCATCCAATGCCCGAGGAC 60.107 55.000 0.00 0.00 33.57 3.85
1179 1186 1.219664 CCAATGCCCGAGGACGTTA 59.780 57.895 0.00 0.00 37.88 3.18
1310 1322 0.038166 GGATGGCCCAACTCACTTCA 59.962 55.000 0.00 0.00 34.14 3.02
1419 1432 2.344500 CGGGAACAACACCGGCTA 59.656 61.111 0.00 0.00 46.08 3.93
1442 1455 0.320771 CTGGAAGGTGACGGTGAAGG 60.321 60.000 0.00 0.00 0.00 3.46
1455 1468 1.234821 GTGAAGGTGATGAACGGCAA 58.765 50.000 0.00 0.00 0.00 4.52
1512 1525 3.796844 GCCGTTCATCAGATCAAGATCGA 60.797 47.826 4.54 5.91 42.48 3.59
1706 1719 9.019656 ACTGTTTATGGTTTATGCATTGAACTA 57.980 29.630 19.03 15.66 0.00 2.24
1771 1784 5.277857 AGTTGATCCTCTGTTTATACCCG 57.722 43.478 0.00 0.00 0.00 5.28
2028 2041 1.304509 GCCAGGCTGAGTTGAGAAGC 61.305 60.000 17.94 3.22 36.17 3.86
2051 2064 2.028420 TGCAATGCAGCTACTGTAGG 57.972 50.000 16.09 2.23 33.32 3.18
2084 2097 4.681978 ACGCCCGAAGTGTGCCTC 62.682 66.667 0.00 0.00 37.96 4.70
2087 2100 4.680237 CCCGAAGTGTGCCTCGCA 62.680 66.667 0.00 0.00 35.60 5.10
2088 2101 2.664851 CCGAAGTGTGCCTCGCAA 60.665 61.111 0.00 0.00 41.47 4.85
2089 2102 2.671177 CCGAAGTGTGCCTCGCAAG 61.671 63.158 0.00 0.00 41.47 4.01
2103 2116 3.018598 TCGCAAGATATCTGCTACTGC 57.981 47.619 13.95 13.95 45.01 4.40
2104 2117 2.064762 CGCAAGATATCTGCTACTGCC 58.935 52.381 16.87 4.20 43.02 4.85
2105 2118 2.546584 CGCAAGATATCTGCTACTGCCA 60.547 50.000 16.87 0.00 43.02 4.92
2106 2119 3.672808 GCAAGATATCTGCTACTGCCAT 58.327 45.455 13.23 0.00 38.71 4.40
2107 2120 3.436015 GCAAGATATCTGCTACTGCCATG 59.564 47.826 13.23 2.99 38.71 3.66
2108 2121 3.331478 AGATATCTGCTACTGCCATGC 57.669 47.619 3.89 0.00 38.71 4.06
2109 2122 2.636403 AGATATCTGCTACTGCCATGCA 59.364 45.455 3.89 0.00 38.71 3.96
2137 2150 8.904099 AAAAAGATACTTGCTACTGTACACTT 57.096 30.769 0.00 0.00 0.00 3.16
2138 2151 8.904099 AAAAGATACTTGCTACTGTACACTTT 57.096 30.769 0.00 0.00 34.02 2.66
2139 2152 8.904099 AAAGATACTTGCTACTGTACACTTTT 57.096 30.769 0.00 0.00 31.48 2.27
2140 2153 9.991906 AAAGATACTTGCTACTGTACACTTTTA 57.008 29.630 0.00 0.00 31.48 1.52
2159 2172 9.573133 CACTTTTATTAAATCATGTCTTGTCCC 57.427 33.333 0.00 0.00 0.00 4.46
2160 2173 9.533831 ACTTTTATTAAATCATGTCTTGTCCCT 57.466 29.630 0.00 0.00 0.00 4.20
2163 2176 5.643379 TTAAATCATGTCTTGTCCCTTGC 57.357 39.130 0.00 0.00 0.00 4.01
2164 2177 1.742761 ATCATGTCTTGTCCCTTGCG 58.257 50.000 0.00 0.00 0.00 4.85
2165 2178 0.955428 TCATGTCTTGTCCCTTGCGC 60.955 55.000 0.00 0.00 0.00 6.09
2166 2179 1.073025 ATGTCTTGTCCCTTGCGCA 59.927 52.632 5.66 5.66 0.00 6.09
2167 2180 1.237285 ATGTCTTGTCCCTTGCGCAC 61.237 55.000 11.12 0.00 0.00 5.34
2168 2181 1.891919 GTCTTGTCCCTTGCGCACA 60.892 57.895 11.12 0.08 0.00 4.57
2169 2182 1.891919 TCTTGTCCCTTGCGCACAC 60.892 57.895 11.12 5.20 0.00 3.82
2170 2183 2.124529 TTGTCCCTTGCGCACACA 60.125 55.556 11.12 8.18 0.00 3.72
2171 2184 1.518056 CTTGTCCCTTGCGCACACAT 61.518 55.000 11.12 0.00 0.00 3.21
2172 2185 0.250510 TTGTCCCTTGCGCACACATA 60.251 50.000 11.12 0.00 0.00 2.29
2173 2186 0.035534 TGTCCCTTGCGCACACATAT 60.036 50.000 11.12 0.00 0.00 1.78
2174 2187 0.657840 GTCCCTTGCGCACACATATC 59.342 55.000 11.12 0.00 0.00 1.63
2175 2188 0.463654 TCCCTTGCGCACACATATCC 60.464 55.000 11.12 0.00 0.00 2.59
2176 2189 1.447317 CCCTTGCGCACACATATCCC 61.447 60.000 11.12 0.00 0.00 3.85
2177 2190 1.447317 CCTTGCGCACACATATCCCC 61.447 60.000 11.12 0.00 0.00 4.81
2178 2191 1.775039 CTTGCGCACACATATCCCCG 61.775 60.000 11.12 0.00 0.00 5.73
2179 2192 2.203015 GCGCACACATATCCCCGT 60.203 61.111 0.30 0.00 0.00 5.28
2180 2193 2.244651 GCGCACACATATCCCCGTC 61.245 63.158 0.30 0.00 0.00 4.79
2181 2194 1.594293 CGCACACATATCCCCGTCC 60.594 63.158 0.00 0.00 0.00 4.79
2182 2195 1.227853 GCACACATATCCCCGTCCC 60.228 63.158 0.00 0.00 0.00 4.46
2183 2196 1.450211 CACACATATCCCCGTCCCC 59.550 63.158 0.00 0.00 0.00 4.81
2184 2197 1.003704 ACACATATCCCCGTCCCCA 59.996 57.895 0.00 0.00 0.00 4.96
2185 2198 0.401395 ACACATATCCCCGTCCCCAT 60.401 55.000 0.00 0.00 0.00 4.00
2186 2199 0.324943 CACATATCCCCGTCCCCATC 59.675 60.000 0.00 0.00 0.00 3.51
2187 2200 0.193574 ACATATCCCCGTCCCCATCT 59.806 55.000 0.00 0.00 0.00 2.90
2188 2201 1.362224 CATATCCCCGTCCCCATCTT 58.638 55.000 0.00 0.00 0.00 2.40
2189 2202 1.279271 CATATCCCCGTCCCCATCTTC 59.721 57.143 0.00 0.00 0.00 2.87
2190 2203 0.473117 TATCCCCGTCCCCATCTTCC 60.473 60.000 0.00 0.00 0.00 3.46
2191 2204 3.861797 CCCCGTCCCCATCTTCCG 61.862 72.222 0.00 0.00 0.00 4.30
2192 2205 2.762459 CCCGTCCCCATCTTCCGA 60.762 66.667 0.00 0.00 0.00 4.55
2193 2206 2.499685 CCGTCCCCATCTTCCGAC 59.500 66.667 0.00 0.00 0.00 4.79
2194 2207 2.058595 CCGTCCCCATCTTCCGACT 61.059 63.158 0.00 0.00 0.00 4.18
2195 2208 1.437986 CGTCCCCATCTTCCGACTC 59.562 63.158 0.00 0.00 0.00 3.36
2196 2209 1.437986 GTCCCCATCTTCCGACTCG 59.562 63.158 0.00 0.00 0.00 4.18
2197 2210 2.107141 CCCCATCTTCCGACTCGC 59.893 66.667 0.00 0.00 0.00 5.03
2198 2211 2.107141 CCCATCTTCCGACTCGCC 59.893 66.667 0.00 0.00 0.00 5.54
2199 2212 2.107141 CCATCTTCCGACTCGCCC 59.893 66.667 0.00 0.00 0.00 6.13
2200 2213 2.427245 CCATCTTCCGACTCGCCCT 61.427 63.158 0.00 0.00 0.00 5.19
2201 2214 1.517832 CATCTTCCGACTCGCCCTT 59.482 57.895 0.00 0.00 0.00 3.95
2202 2215 0.807667 CATCTTCCGACTCGCCCTTG 60.808 60.000 0.00 0.00 0.00 3.61
2203 2216 1.258445 ATCTTCCGACTCGCCCTTGT 61.258 55.000 0.00 0.00 0.00 3.16
2204 2217 1.446272 CTTCCGACTCGCCCTTGTC 60.446 63.158 0.00 0.00 0.00 3.18
2205 2218 2.837371 CTTCCGACTCGCCCTTGTCC 62.837 65.000 0.00 0.00 0.00 4.02
2206 2219 3.382832 CCGACTCGCCCTTGTCCT 61.383 66.667 0.00 0.00 0.00 3.85
2207 2220 2.182030 CGACTCGCCCTTGTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
2208 2221 2.182030 GACTCGCCCTTGTCCTCG 59.818 66.667 0.00 0.00 0.00 4.63
2209 2222 3.991536 GACTCGCCCTTGTCCTCGC 62.992 68.421 0.00 0.00 0.00 5.03
2210 2223 3.764466 CTCGCCCTTGTCCTCGCT 61.764 66.667 0.00 0.00 0.00 4.93
2211 2224 3.997064 CTCGCCCTTGTCCTCGCTG 62.997 68.421 0.00 0.00 0.00 5.18
2213 2226 4.021925 GCCCTTGTCCTCGCTGGT 62.022 66.667 0.00 0.00 37.07 4.00
2214 2227 2.656069 GCCCTTGTCCTCGCTGGTA 61.656 63.158 0.00 0.00 37.07 3.25
2215 2228 1.517832 CCCTTGTCCTCGCTGGTAG 59.482 63.158 0.00 0.00 37.07 3.18
2216 2229 1.153549 CCTTGTCCTCGCTGGTAGC 60.154 63.158 0.00 0.00 38.02 3.58
2217 2230 1.153549 CTTGTCCTCGCTGGTAGCC 60.154 63.158 0.00 0.00 38.18 3.93
2218 2231 1.888436 CTTGTCCTCGCTGGTAGCCA 61.888 60.000 0.00 0.00 38.18 4.75
2219 2232 1.264749 TTGTCCTCGCTGGTAGCCAT 61.265 55.000 0.00 0.00 38.18 4.40
2220 2233 1.227380 GTCCTCGCTGGTAGCCATG 60.227 63.158 0.00 0.00 38.18 3.66
2221 2234 2.109799 CCTCGCTGGTAGCCATGG 59.890 66.667 7.63 7.63 38.18 3.66
2222 2235 2.590007 CTCGCTGGTAGCCATGGC 60.590 66.667 30.12 30.12 38.18 4.40
2223 2236 4.529219 TCGCTGGTAGCCATGGCG 62.529 66.667 30.50 17.17 45.39 5.69
2232 2245 4.557942 GCCATGGCGTGTTCTTTG 57.442 55.556 23.48 0.00 0.00 2.77
2233 2246 1.659794 GCCATGGCGTGTTCTTTGT 59.340 52.632 23.48 0.00 0.00 2.83
2234 2247 0.387239 GCCATGGCGTGTTCTTTGTC 60.387 55.000 23.48 0.00 0.00 3.18
2235 2248 0.240945 CCATGGCGTGTTCTTTGTCC 59.759 55.000 0.00 0.00 0.00 4.02
2236 2249 0.240945 CATGGCGTGTTCTTTGTCCC 59.759 55.000 0.00 0.00 0.00 4.46
2237 2250 0.110486 ATGGCGTGTTCTTTGTCCCT 59.890 50.000 0.00 0.00 0.00 4.20
2238 2251 0.534203 TGGCGTGTTCTTTGTCCCTC 60.534 55.000 0.00 0.00 0.00 4.30
2239 2252 0.534203 GGCGTGTTCTTTGTCCCTCA 60.534 55.000 0.00 0.00 0.00 3.86
2240 2253 1.305201 GCGTGTTCTTTGTCCCTCAA 58.695 50.000 0.00 0.00 0.00 3.02
2241 2254 1.673920 GCGTGTTCTTTGTCCCTCAAA 59.326 47.619 0.00 0.00 42.79 2.69
2248 2261 2.727123 TTTGTCCCTCAAAGCAGTGA 57.273 45.000 0.00 0.00 40.56 3.41
2249 2262 2.727123 TTGTCCCTCAAAGCAGTGAA 57.273 45.000 0.00 0.00 32.64 3.18
2250 2263 1.967319 TGTCCCTCAAAGCAGTGAAC 58.033 50.000 0.00 0.00 0.00 3.18
2251 2264 1.211703 TGTCCCTCAAAGCAGTGAACA 59.788 47.619 0.00 0.00 0.00 3.18
2252 2265 1.604278 GTCCCTCAAAGCAGTGAACAC 59.396 52.381 0.00 0.00 0.00 3.32
2253 2266 0.954452 CCCTCAAAGCAGTGAACACC 59.046 55.000 0.00 0.00 0.00 4.16
2254 2267 0.588252 CCTCAAAGCAGTGAACACCG 59.412 55.000 0.00 0.00 0.00 4.94
2255 2268 1.581934 CTCAAAGCAGTGAACACCGA 58.418 50.000 0.00 0.00 0.00 4.69
2256 2269 1.939934 CTCAAAGCAGTGAACACCGAA 59.060 47.619 0.00 0.00 0.00 4.30
2257 2270 1.668751 TCAAAGCAGTGAACACCGAAC 59.331 47.619 0.00 0.00 0.00 3.95
2258 2271 1.021968 AAAGCAGTGAACACCGAACC 58.978 50.000 0.00 0.00 0.00 3.62
2259 2272 0.107410 AAGCAGTGAACACCGAACCA 60.107 50.000 0.00 0.00 0.00 3.67
2260 2273 0.107410 AGCAGTGAACACCGAACCAA 60.107 50.000 0.00 0.00 0.00 3.67
2261 2274 0.736053 GCAGTGAACACCGAACCAAA 59.264 50.000 0.00 0.00 0.00 3.28
2262 2275 1.336755 GCAGTGAACACCGAACCAAAT 59.663 47.619 0.00 0.00 0.00 2.32
2263 2276 2.604614 GCAGTGAACACCGAACCAAATC 60.605 50.000 0.00 0.00 0.00 2.17
2264 2277 2.031157 CAGTGAACACCGAACCAAATCC 60.031 50.000 1.11 0.00 0.00 3.01
2265 2278 2.158667 AGTGAACACCGAACCAAATCCT 60.159 45.455 1.11 0.00 0.00 3.24
2266 2279 2.225727 GTGAACACCGAACCAAATCCTC 59.774 50.000 0.00 0.00 0.00 3.71
2267 2280 1.463444 GAACACCGAACCAAATCCTCG 59.537 52.381 0.00 0.00 0.00 4.63
2268 2281 0.682852 ACACCGAACCAAATCCTCGA 59.317 50.000 0.00 0.00 34.52 4.04
2269 2282 1.278127 ACACCGAACCAAATCCTCGAT 59.722 47.619 0.00 0.00 34.52 3.59
2270 2283 2.290071 ACACCGAACCAAATCCTCGATT 60.290 45.455 0.00 0.00 34.52 3.34
2271 2284 2.747446 CACCGAACCAAATCCTCGATTT 59.253 45.455 0.00 0.00 42.14 2.17
2279 2292 3.788333 AAATCCTCGATTTGTGCCATG 57.212 42.857 0.00 0.00 40.24 3.66
2280 2293 1.027357 ATCCTCGATTTGTGCCATGC 58.973 50.000 0.00 0.00 0.00 4.06
2281 2294 0.035152 TCCTCGATTTGTGCCATGCT 60.035 50.000 0.00 0.00 0.00 3.79
2282 2295 0.813184 CCTCGATTTGTGCCATGCTT 59.187 50.000 0.00 0.00 0.00 3.91
2283 2296 1.202222 CCTCGATTTGTGCCATGCTTC 60.202 52.381 0.00 0.00 0.00 3.86
2284 2297 0.810648 TCGATTTGTGCCATGCTTCC 59.189 50.000 0.00 0.00 0.00 3.46
2285 2298 0.523968 CGATTTGTGCCATGCTTCCG 60.524 55.000 0.00 0.00 0.00 4.30
2286 2299 0.527565 GATTTGTGCCATGCTTCCGT 59.472 50.000 0.00 0.00 0.00 4.69
2287 2300 0.968405 ATTTGTGCCATGCTTCCGTT 59.032 45.000 0.00 0.00 0.00 4.44
2288 2301 0.749649 TTTGTGCCATGCTTCCGTTT 59.250 45.000 0.00 0.00 0.00 3.60
2289 2302 0.313672 TTGTGCCATGCTTCCGTTTC 59.686 50.000 0.00 0.00 0.00 2.78
2290 2303 1.212751 GTGCCATGCTTCCGTTTCC 59.787 57.895 0.00 0.00 0.00 3.13
2291 2304 2.331893 TGCCATGCTTCCGTTTCCG 61.332 57.895 0.00 0.00 0.00 4.30
2292 2305 2.332654 GCCATGCTTCCGTTTCCGT 61.333 57.895 0.00 0.00 0.00 4.69
2293 2306 1.501741 CCATGCTTCCGTTTCCGTG 59.498 57.895 0.00 0.00 0.00 4.94
2294 2307 1.234615 CCATGCTTCCGTTTCCGTGT 61.235 55.000 0.00 0.00 0.00 4.49
2295 2308 0.591170 CATGCTTCCGTTTCCGTGTT 59.409 50.000 0.00 0.00 0.00 3.32
2296 2309 0.872388 ATGCTTCCGTTTCCGTGTTC 59.128 50.000 0.00 0.00 0.00 3.18
2297 2310 0.179067 TGCTTCCGTTTCCGTGTTCT 60.179 50.000 0.00 0.00 0.00 3.01
2298 2311 1.068895 TGCTTCCGTTTCCGTGTTCTA 59.931 47.619 0.00 0.00 0.00 2.10
2299 2312 2.137523 GCTTCCGTTTCCGTGTTCTAA 58.862 47.619 0.00 0.00 0.00 2.10
2300 2313 2.740447 GCTTCCGTTTCCGTGTTCTAAT 59.260 45.455 0.00 0.00 0.00 1.73
2301 2314 3.187842 GCTTCCGTTTCCGTGTTCTAATT 59.812 43.478 0.00 0.00 0.00 1.40
2302 2315 4.708601 CTTCCGTTTCCGTGTTCTAATTG 58.291 43.478 0.00 0.00 0.00 2.32
2303 2316 2.481185 TCCGTTTCCGTGTTCTAATTGC 59.519 45.455 0.00 0.00 0.00 3.56
2304 2317 2.482721 CCGTTTCCGTGTTCTAATTGCT 59.517 45.455 0.00 0.00 0.00 3.91
2305 2318 3.479006 CGTTTCCGTGTTCTAATTGCTG 58.521 45.455 0.00 0.00 0.00 4.41
2306 2319 3.059188 CGTTTCCGTGTTCTAATTGCTGT 60.059 43.478 0.00 0.00 0.00 4.40
2307 2320 4.553938 CGTTTCCGTGTTCTAATTGCTGTT 60.554 41.667 0.00 0.00 0.00 3.16
2308 2321 4.742438 TTCCGTGTTCTAATTGCTGTTC 57.258 40.909 0.00 0.00 0.00 3.18
2309 2322 4.002906 TCCGTGTTCTAATTGCTGTTCT 57.997 40.909 0.00 0.00 0.00 3.01
2310 2323 4.385825 TCCGTGTTCTAATTGCTGTTCTT 58.614 39.130 0.00 0.00 0.00 2.52
2311 2324 4.819630 TCCGTGTTCTAATTGCTGTTCTTT 59.180 37.500 0.00 0.00 0.00 2.52
2312 2325 5.298276 TCCGTGTTCTAATTGCTGTTCTTTT 59.702 36.000 0.00 0.00 0.00 2.27
2313 2326 5.625311 CCGTGTTCTAATTGCTGTTCTTTTC 59.375 40.000 0.00 0.00 0.00 2.29
2314 2327 6.430451 CGTGTTCTAATTGCTGTTCTTTTCT 58.570 36.000 0.00 0.00 0.00 2.52
2315 2328 6.358030 CGTGTTCTAATTGCTGTTCTTTTCTG 59.642 38.462 0.00 0.00 0.00 3.02
2316 2329 7.196331 GTGTTCTAATTGCTGTTCTTTTCTGT 58.804 34.615 0.00 0.00 0.00 3.41
2317 2330 7.702348 GTGTTCTAATTGCTGTTCTTTTCTGTT 59.298 33.333 0.00 0.00 0.00 3.16
2318 2331 7.915397 TGTTCTAATTGCTGTTCTTTTCTGTTC 59.085 33.333 0.00 0.00 0.00 3.18
2319 2332 7.807977 TCTAATTGCTGTTCTTTTCTGTTCT 57.192 32.000 0.00 0.00 0.00 3.01
2320 2333 8.225603 TCTAATTGCTGTTCTTTTCTGTTCTT 57.774 30.769 0.00 0.00 0.00 2.52
2321 2334 8.345565 TCTAATTGCTGTTCTTTTCTGTTCTTC 58.654 33.333 0.00 0.00 0.00 2.87
2322 2335 4.536364 TGCTGTTCTTTTCTGTTCTTCG 57.464 40.909 0.00 0.00 0.00 3.79
2323 2336 3.938963 TGCTGTTCTTTTCTGTTCTTCGT 59.061 39.130 0.00 0.00 0.00 3.85
2324 2337 4.394920 TGCTGTTCTTTTCTGTTCTTCGTT 59.605 37.500 0.00 0.00 0.00 3.85
2325 2338 4.964555 GCTGTTCTTTTCTGTTCTTCGTTC 59.035 41.667 0.00 0.00 0.00 3.95
2326 2339 5.138800 TGTTCTTTTCTGTTCTTCGTTCG 57.861 39.130 0.00 0.00 0.00 3.95
2327 2340 4.865925 TGTTCTTTTCTGTTCTTCGTTCGA 59.134 37.500 0.00 0.00 0.00 3.71
2328 2341 5.522460 TGTTCTTTTCTGTTCTTCGTTCGAT 59.478 36.000 0.00 0.00 0.00 3.59
2329 2342 6.036735 TGTTCTTTTCTGTTCTTCGTTCGATT 59.963 34.615 0.00 0.00 0.00 3.34
2330 2343 6.598753 TCTTTTCTGTTCTTCGTTCGATTT 57.401 33.333 0.00 0.00 0.00 2.17
2331 2344 7.703298 TCTTTTCTGTTCTTCGTTCGATTTA 57.297 32.000 0.00 0.00 0.00 1.40
2332 2345 7.561556 TCTTTTCTGTTCTTCGTTCGATTTAC 58.438 34.615 0.00 0.00 0.00 2.01
2333 2346 7.437267 TCTTTTCTGTTCTTCGTTCGATTTACT 59.563 33.333 0.00 0.00 0.00 2.24
2334 2347 7.473027 TTTCTGTTCTTCGTTCGATTTACTT 57.527 32.000 0.00 0.00 0.00 2.24
2335 2348 6.448053 TCTGTTCTTCGTTCGATTTACTTG 57.552 37.500 0.00 0.00 0.00 3.16
2336 2349 5.013861 TGTTCTTCGTTCGATTTACTTGC 57.986 39.130 0.00 0.00 0.00 4.01
2337 2350 4.508492 TGTTCTTCGTTCGATTTACTTGCA 59.492 37.500 0.00 0.00 0.00 4.08
2338 2351 4.903638 TCTTCGTTCGATTTACTTGCAG 57.096 40.909 0.00 0.00 0.00 4.41
2339 2352 4.304110 TCTTCGTTCGATTTACTTGCAGT 58.696 39.130 0.00 0.00 0.00 4.40
2340 2353 4.384846 TCTTCGTTCGATTTACTTGCAGTC 59.615 41.667 0.00 0.00 0.00 3.51
2341 2354 3.909430 TCGTTCGATTTACTTGCAGTCT 58.091 40.909 0.00 0.00 0.00 3.24
2342 2355 3.918591 TCGTTCGATTTACTTGCAGTCTC 59.081 43.478 0.00 0.00 0.00 3.36
2343 2356 3.673338 CGTTCGATTTACTTGCAGTCTCA 59.327 43.478 0.00 0.00 0.00 3.27
2344 2357 4.201532 CGTTCGATTTACTTGCAGTCTCAG 60.202 45.833 0.00 0.00 0.00 3.35
2345 2358 3.254060 TCGATTTACTTGCAGTCTCAGC 58.746 45.455 0.00 0.00 0.00 4.26
2346 2359 2.995939 CGATTTACTTGCAGTCTCAGCA 59.004 45.455 0.00 0.00 40.85 4.41
2347 2360 3.061831 CGATTTACTTGCAGTCTCAGCAG 59.938 47.826 0.00 0.00 43.75 4.24
2348 2361 3.475566 TTTACTTGCAGTCTCAGCAGT 57.524 42.857 0.00 0.00 43.75 4.40
2349 2362 4.600692 TTTACTTGCAGTCTCAGCAGTA 57.399 40.909 0.00 0.00 43.75 2.74
2350 2363 2.447244 ACTTGCAGTCTCAGCAGTAC 57.553 50.000 0.00 0.00 43.75 2.73
2351 2364 1.001406 ACTTGCAGTCTCAGCAGTACC 59.999 52.381 0.00 0.00 43.75 3.34
2352 2365 0.321671 TTGCAGTCTCAGCAGTACCC 59.678 55.000 0.00 0.00 43.75 3.69
2353 2366 0.831711 TGCAGTCTCAGCAGTACCCA 60.832 55.000 0.00 0.00 37.02 4.51
2354 2367 0.390472 GCAGTCTCAGCAGTACCCAC 60.390 60.000 0.00 0.00 0.00 4.61
2355 2368 0.969149 CAGTCTCAGCAGTACCCACA 59.031 55.000 0.00 0.00 0.00 4.17
2356 2369 0.969894 AGTCTCAGCAGTACCCACAC 59.030 55.000 0.00 0.00 0.00 3.82
2357 2370 0.388649 GTCTCAGCAGTACCCACACG 60.389 60.000 0.00 0.00 0.00 4.49
2358 2371 0.826256 TCTCAGCAGTACCCACACGT 60.826 55.000 0.00 0.00 0.00 4.49
2359 2372 0.667487 CTCAGCAGTACCCACACGTG 60.667 60.000 15.48 15.48 0.00 4.49
2360 2373 1.110518 TCAGCAGTACCCACACGTGA 61.111 55.000 25.01 0.00 0.00 4.35
2361 2374 0.249699 CAGCAGTACCCACACGTGAA 60.250 55.000 25.01 0.00 0.00 3.18
2362 2375 0.249741 AGCAGTACCCACACGTGAAC 60.250 55.000 25.01 11.51 0.00 3.18
2363 2376 0.249741 GCAGTACCCACACGTGAACT 60.250 55.000 25.01 13.53 0.00 3.01
2364 2377 1.779569 CAGTACCCACACGTGAACTC 58.220 55.000 25.01 7.28 0.00 3.01
2365 2378 1.340248 CAGTACCCACACGTGAACTCT 59.660 52.381 25.01 9.44 0.00 3.24
2366 2379 1.340248 AGTACCCACACGTGAACTCTG 59.660 52.381 25.01 9.49 0.00 3.35
2367 2380 0.677288 TACCCACACGTGAACTCTGG 59.323 55.000 25.01 18.43 0.00 3.86
2368 2381 1.301716 CCCACACGTGAACTCTGGG 60.302 63.158 25.01 23.49 35.81 4.45
2369 2382 1.301716 CCACACGTGAACTCTGGGG 60.302 63.158 25.01 0.00 0.00 4.96
2370 2383 1.745890 CACACGTGAACTCTGGGGA 59.254 57.895 25.01 0.00 0.00 4.81
2371 2384 0.105964 CACACGTGAACTCTGGGGAA 59.894 55.000 25.01 0.00 0.00 3.97
2372 2385 0.834612 ACACGTGAACTCTGGGGAAA 59.165 50.000 25.01 0.00 0.00 3.13
2373 2386 1.210967 ACACGTGAACTCTGGGGAAAA 59.789 47.619 25.01 0.00 0.00 2.29
2374 2387 2.294074 CACGTGAACTCTGGGGAAAAA 58.706 47.619 10.90 0.00 0.00 1.94
2394 2407 3.866883 AACCAAATCCATAAACCAGCG 57.133 42.857 0.00 0.00 0.00 5.18
2395 2408 3.080300 ACCAAATCCATAAACCAGCGA 57.920 42.857 0.00 0.00 0.00 4.93
2396 2409 3.631250 ACCAAATCCATAAACCAGCGAT 58.369 40.909 0.00 0.00 0.00 4.58
2397 2410 3.632145 ACCAAATCCATAAACCAGCGATC 59.368 43.478 0.00 0.00 0.00 3.69
2398 2411 3.004734 CCAAATCCATAAACCAGCGATCC 59.995 47.826 0.00 0.00 0.00 3.36
2399 2412 3.864789 AATCCATAAACCAGCGATCCT 57.135 42.857 0.00 0.00 0.00 3.24
2400 2413 2.910688 TCCATAAACCAGCGATCCTC 57.089 50.000 0.00 0.00 0.00 3.71
2401 2414 1.416401 TCCATAAACCAGCGATCCTCC 59.584 52.381 0.00 0.00 0.00 4.30
2402 2415 1.543429 CCATAAACCAGCGATCCTCCC 60.543 57.143 0.00 0.00 0.00 4.30
2403 2416 1.140852 CATAAACCAGCGATCCTCCCA 59.859 52.381 0.00 0.00 0.00 4.37
2404 2417 1.507140 TAAACCAGCGATCCTCCCAT 58.493 50.000 0.00 0.00 0.00 4.00
2405 2418 0.181350 AAACCAGCGATCCTCCCATC 59.819 55.000 0.00 0.00 0.00 3.51
2406 2419 1.700042 AACCAGCGATCCTCCCATCC 61.700 60.000 0.00 0.00 0.00 3.51
2407 2420 1.840650 CCAGCGATCCTCCCATCCT 60.841 63.158 0.00 0.00 0.00 3.24
2408 2421 1.370437 CAGCGATCCTCCCATCCTG 59.630 63.158 0.00 0.00 0.00 3.86
2409 2422 1.840650 AGCGATCCTCCCATCCTGG 60.841 63.158 0.00 0.00 37.25 4.45
2410 2423 1.838846 GCGATCCTCCCATCCTGGA 60.839 63.158 0.00 0.00 40.96 3.86
2411 2424 2.053618 CGATCCTCCCATCCTGGAC 58.946 63.158 0.00 0.00 40.96 4.02
2412 2425 1.810606 CGATCCTCCCATCCTGGACG 61.811 65.000 0.00 0.00 40.96 4.79
2413 2426 0.470080 GATCCTCCCATCCTGGACGA 60.470 60.000 0.00 0.00 40.96 4.20
2414 2427 0.031111 ATCCTCCCATCCTGGACGAA 60.031 55.000 0.00 0.00 40.96 3.85
2415 2428 0.252513 TCCTCCCATCCTGGACGAAA 60.253 55.000 0.00 0.00 40.96 3.46
2416 2429 0.107654 CCTCCCATCCTGGACGAAAC 60.108 60.000 0.00 0.00 40.96 2.78
2417 2430 0.613260 CTCCCATCCTGGACGAAACA 59.387 55.000 0.00 0.00 40.96 2.83
2418 2431 0.613260 TCCCATCCTGGACGAAACAG 59.387 55.000 0.00 0.00 40.96 3.16
2423 2436 3.862124 CTGGACGAAACAGGCTCG 58.138 61.111 0.00 0.00 42.06 5.03
2424 2437 1.289066 CTGGACGAAACAGGCTCGA 59.711 57.895 0.61 0.00 39.60 4.04
2425 2438 0.319555 CTGGACGAAACAGGCTCGAA 60.320 55.000 0.61 0.00 39.60 3.71
2426 2439 0.105224 TGGACGAAACAGGCTCGAAA 59.895 50.000 0.61 0.00 39.60 3.46
2427 2440 1.270625 TGGACGAAACAGGCTCGAAAT 60.271 47.619 0.61 0.00 39.60 2.17
2428 2441 1.804748 GGACGAAACAGGCTCGAAATT 59.195 47.619 0.61 0.00 39.60 1.82
2429 2442 2.997986 GGACGAAACAGGCTCGAAATTA 59.002 45.455 0.61 0.00 39.60 1.40
2430 2443 3.434299 GGACGAAACAGGCTCGAAATTAA 59.566 43.478 0.61 0.00 39.60 1.40
2431 2444 4.083696 GGACGAAACAGGCTCGAAATTAAA 60.084 41.667 0.61 0.00 39.60 1.52
2432 2445 4.779987 ACGAAACAGGCTCGAAATTAAAC 58.220 39.130 0.61 0.00 39.60 2.01
2433 2446 4.514066 ACGAAACAGGCTCGAAATTAAACT 59.486 37.500 0.61 0.00 39.60 2.66
2434 2447 5.008316 ACGAAACAGGCTCGAAATTAAACTT 59.992 36.000 0.61 0.00 39.60 2.66
2435 2448 5.912955 CGAAACAGGCTCGAAATTAAACTTT 59.087 36.000 0.00 0.00 38.61 2.66
2436 2449 6.086371 CGAAACAGGCTCGAAATTAAACTTTC 59.914 38.462 0.00 0.00 38.61 2.62
2445 2458 3.824414 AATTAAACTTTCGCTCGGTGG 57.176 42.857 0.00 0.00 0.00 4.61
2446 2459 0.869730 TTAAACTTTCGCTCGGTGGC 59.130 50.000 0.00 0.00 0.00 5.01
2447 2460 0.249953 TAAACTTTCGCTCGGTGGCA 60.250 50.000 0.00 0.00 0.00 4.92
2448 2461 1.782028 AAACTTTCGCTCGGTGGCAC 61.782 55.000 9.70 9.70 0.00 5.01
2449 2462 2.664851 CTTTCGCTCGGTGGCACA 60.665 61.111 20.82 0.00 0.00 4.57
2450 2463 2.203084 TTTCGCTCGGTGGCACAA 60.203 55.556 20.82 5.85 44.16 3.33
2451 2464 1.781025 CTTTCGCTCGGTGGCACAAA 61.781 55.000 20.82 9.02 44.16 2.83
2452 2465 1.169661 TTTCGCTCGGTGGCACAAAT 61.170 50.000 20.82 0.00 44.16 2.32
2453 2466 1.851021 TTCGCTCGGTGGCACAAATG 61.851 55.000 20.82 6.03 44.16 2.32
2454 2467 2.324330 CGCTCGGTGGCACAAATGA 61.324 57.895 20.82 10.12 44.16 2.57
2455 2468 1.503542 GCTCGGTGGCACAAATGAG 59.496 57.895 20.82 19.23 44.16 2.90
2456 2469 1.503542 CTCGGTGGCACAAATGAGC 59.496 57.895 20.82 0.00 44.16 4.26
2457 2470 0.957395 CTCGGTGGCACAAATGAGCT 60.957 55.000 20.82 0.00 44.16 4.09
2458 2471 0.537143 TCGGTGGCACAAATGAGCTT 60.537 50.000 20.82 0.00 44.16 3.74
2459 2472 0.109597 CGGTGGCACAAATGAGCTTC 60.110 55.000 20.82 0.00 44.16 3.86
2460 2473 0.109597 GGTGGCACAAATGAGCTTCG 60.110 55.000 20.82 0.00 44.16 3.79
2461 2474 0.109597 GTGGCACAAATGAGCTTCGG 60.110 55.000 13.86 0.00 44.16 4.30
2462 2475 0.250684 TGGCACAAATGAGCTTCGGA 60.251 50.000 2.97 0.00 31.92 4.55
2463 2476 0.881118 GGCACAAATGAGCTTCGGAA 59.119 50.000 2.97 0.00 0.00 4.30
2464 2477 1.269448 GGCACAAATGAGCTTCGGAAA 59.731 47.619 2.97 0.00 0.00 3.13
2465 2478 2.288152 GGCACAAATGAGCTTCGGAAAA 60.288 45.455 2.97 0.00 0.00 2.29
2466 2479 2.726241 GCACAAATGAGCTTCGGAAAAC 59.274 45.455 0.00 0.00 0.00 2.43
2467 2480 3.550842 GCACAAATGAGCTTCGGAAAACT 60.551 43.478 0.00 0.00 0.00 2.66
2468 2481 4.320202 GCACAAATGAGCTTCGGAAAACTA 60.320 41.667 0.00 0.00 0.00 2.24
2469 2482 5.619981 GCACAAATGAGCTTCGGAAAACTAT 60.620 40.000 0.00 0.00 0.00 2.12
2470 2483 5.796935 CACAAATGAGCTTCGGAAAACTATG 59.203 40.000 0.00 0.00 0.00 2.23
2471 2484 5.705441 ACAAATGAGCTTCGGAAAACTATGA 59.295 36.000 0.00 0.00 0.00 2.15
2472 2485 6.206634 ACAAATGAGCTTCGGAAAACTATGAA 59.793 34.615 0.00 0.00 0.00 2.57
2473 2486 6.817765 AATGAGCTTCGGAAAACTATGAAA 57.182 33.333 0.00 0.00 0.00 2.69
2474 2487 6.817765 ATGAGCTTCGGAAAACTATGAAAA 57.182 33.333 0.00 0.00 0.00 2.29
2475 2488 6.627395 TGAGCTTCGGAAAACTATGAAAAA 57.373 33.333 0.00 0.00 0.00 1.94
2492 2505 3.389687 AAAAACATACATGCGAGCTCG 57.610 42.857 31.37 31.37 43.27 5.03
2507 2520 4.838046 TCGCCGGCGATGAAAATA 57.162 50.000 45.37 23.24 44.01 1.40
2508 2521 2.303452 TCGCCGGCGATGAAAATAC 58.697 52.632 45.37 1.72 44.01 1.89
2509 2522 0.179094 TCGCCGGCGATGAAAATACT 60.179 50.000 45.37 0.00 44.01 2.12
2510 2523 0.655733 CGCCGGCGATGAAAATACTT 59.344 50.000 44.86 0.00 42.83 2.24
2511 2524 1.332904 CGCCGGCGATGAAAATACTTC 60.333 52.381 44.86 0.00 42.83 3.01
2512 2525 1.668751 GCCGGCGATGAAAATACTTCA 59.331 47.619 12.58 0.00 0.00 3.02
2513 2526 2.538939 GCCGGCGATGAAAATACTTCAC 60.539 50.000 12.58 0.00 0.00 3.18
2514 2527 2.285602 CCGGCGATGAAAATACTTCACG 60.286 50.000 9.30 0.00 0.00 4.35
2515 2528 2.601314 CGGCGATGAAAATACTTCACGA 59.399 45.455 0.00 0.00 0.00 4.35
2516 2529 3.061563 CGGCGATGAAAATACTTCACGAA 59.938 43.478 0.00 0.00 0.00 3.85
2517 2530 4.331962 GGCGATGAAAATACTTCACGAAC 58.668 43.478 0.00 3.31 0.00 3.95
2518 2531 4.142988 GGCGATGAAAATACTTCACGAACA 60.143 41.667 0.00 0.00 0.00 3.18
2519 2532 5.379003 GCGATGAAAATACTTCACGAACAA 58.621 37.500 0.00 0.00 0.00 2.83
2520 2533 5.849081 GCGATGAAAATACTTCACGAACAAA 59.151 36.000 0.00 0.00 0.00 2.83
2521 2534 6.358558 GCGATGAAAATACTTCACGAACAAAA 59.641 34.615 0.00 0.00 0.00 2.44
2522 2535 7.614499 GCGATGAAAATACTTCACGAACAAAAC 60.614 37.037 0.00 0.00 0.00 2.43
2523 2536 7.586300 CGATGAAAATACTTCACGAACAAAACT 59.414 33.333 0.00 0.00 0.00 2.66
2524 2537 8.782533 ATGAAAATACTTCACGAACAAAACTC 57.217 30.769 0.00 0.00 0.00 3.01
2525 2538 7.190871 TGAAAATACTTCACGAACAAAACTCC 58.809 34.615 0.00 0.00 0.00 3.85
2526 2539 4.985044 ATACTTCACGAACAAAACTCCG 57.015 40.909 0.00 0.00 0.00 4.63
2527 2540 2.624636 ACTTCACGAACAAAACTCCGT 58.375 42.857 0.00 0.00 35.46 4.69
2528 2541 3.004862 ACTTCACGAACAAAACTCCGTT 58.995 40.909 0.00 0.00 32.50 4.44
2529 2542 4.183101 ACTTCACGAACAAAACTCCGTTA 58.817 39.130 0.00 0.00 32.50 3.18
2530 2543 4.033243 ACTTCACGAACAAAACTCCGTTAC 59.967 41.667 0.00 0.00 32.50 2.50
2531 2544 3.784338 TCACGAACAAAACTCCGTTACT 58.216 40.909 0.00 0.00 32.50 2.24
2532 2545 4.183101 TCACGAACAAAACTCCGTTACTT 58.817 39.130 0.00 0.00 32.50 2.24
2533 2546 4.630940 TCACGAACAAAACTCCGTTACTTT 59.369 37.500 0.00 0.00 32.50 2.66
2534 2547 5.809562 TCACGAACAAAACTCCGTTACTTTA 59.190 36.000 0.00 0.00 32.50 1.85
2535 2548 6.019640 TCACGAACAAAACTCCGTTACTTTAG 60.020 38.462 0.00 0.00 32.50 1.85
2536 2549 6.019640 CACGAACAAAACTCCGTTACTTTAGA 60.020 38.462 0.00 0.00 32.50 2.10
2537 2550 6.199719 ACGAACAAAACTCCGTTACTTTAGAG 59.800 38.462 0.00 0.00 30.41 2.43
2538 2551 5.919272 ACAAAACTCCGTTACTTTAGAGC 57.081 39.130 0.00 0.00 0.00 4.09
2539 2552 5.362263 ACAAAACTCCGTTACTTTAGAGCA 58.638 37.500 0.00 0.00 0.00 4.26
2540 2553 5.995897 ACAAAACTCCGTTACTTTAGAGCAT 59.004 36.000 0.00 0.00 0.00 3.79
2541 2554 6.147328 ACAAAACTCCGTTACTTTAGAGCATC 59.853 38.462 0.00 0.00 0.00 3.91
2553 2566 2.950877 GAGCATCTCCACTCGTTCG 58.049 57.895 0.00 0.00 0.00 3.95
2554 2567 0.526524 GAGCATCTCCACTCGTTCGG 60.527 60.000 0.00 0.00 0.00 4.30
2555 2568 2.167861 GCATCTCCACTCGTTCGGC 61.168 63.158 0.00 0.00 0.00 5.54
2556 2569 1.519455 CATCTCCACTCGTTCGGCC 60.519 63.158 0.00 0.00 0.00 6.13
2557 2570 2.722201 ATCTCCACTCGTTCGGCCC 61.722 63.158 0.00 0.00 0.00 5.80
2558 2571 4.452733 CTCCACTCGTTCGGCCCC 62.453 72.222 0.00 0.00 0.00 5.80
2560 2573 3.072468 CCACTCGTTCGGCCCCTA 61.072 66.667 0.00 0.00 0.00 3.53
2561 2574 2.494918 CACTCGTTCGGCCCCTAG 59.505 66.667 0.00 0.00 0.00 3.02
2562 2575 2.758737 ACTCGTTCGGCCCCTAGG 60.759 66.667 0.06 0.06 0.00 3.02
2579 2592 2.804856 GCGCACCCGGCAAAATAT 59.195 55.556 0.30 0.00 45.17 1.28
2580 2593 1.588667 GCGCACCCGGCAAAATATG 60.589 57.895 0.30 0.00 45.17 1.78
2605 2618 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
2606 2619 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
2607 2620 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
256 261 4.790718 AACTTTGTTCCCCTCACTACTT 57.209 40.909 0.00 0.00 0.00 2.24
320 325 2.615447 GCTGCTGCTAATATCTGCAACA 59.385 45.455 8.53 5.34 38.81 3.33
560 565 1.899814 TCTCCTAATGACCGTTGTGCT 59.100 47.619 0.00 0.00 0.00 4.40
565 570 6.356186 ACTACTTTTCTCCTAATGACCGTT 57.644 37.500 0.00 0.00 0.00 4.44
580 585 8.262933 AGTGGTACAAGTACAAGAACTACTTTT 58.737 33.333 12.00 0.00 44.16 2.27
581 586 7.789026 AGTGGTACAAGTACAAGAACTACTTT 58.211 34.615 12.00 0.00 44.16 2.66
582 587 7.357429 AGTGGTACAAGTACAAGAACTACTT 57.643 36.000 12.00 0.00 44.16 2.24
600 605 4.321750 CGCTTAACAGAGGAAGAAGTGGTA 60.322 45.833 0.00 0.00 0.00 3.25
653 658 3.058432 CGGTGGTAGTCGATATCATTCGT 60.058 47.826 3.12 0.00 40.03 3.85
689 694 2.538437 CTGAAGACGCTGATTCCTGAG 58.462 52.381 0.00 0.00 0.00 3.35
793 798 0.859232 CACCAAGTTCGAGAACACCG 59.141 55.000 17.00 6.68 43.47 4.94
908 913 2.158234 ACTGTCAACCTTCCTCCTCTCT 60.158 50.000 0.00 0.00 0.00 3.10
989 994 4.199310 CTGTCACTCTTCTCCTCCTCTAG 58.801 52.174 0.00 0.00 0.00 2.43
990 995 3.589735 ACTGTCACTCTTCTCCTCCTCTA 59.410 47.826 0.00 0.00 0.00 2.43
1024 1031 6.233905 TGGCTTATTGAAGAGCATGTAGTA 57.766 37.500 5.83 0.00 40.63 1.82
1055 1062 0.603707 ATGGAGTCAGGCACAACACG 60.604 55.000 0.00 0.00 0.00 4.49
1229 1236 3.068064 TCCTCCATGCGCTCGTCA 61.068 61.111 9.73 0.00 0.00 4.35
1419 1432 1.152312 ACCGTCACCTTCCAGGAGT 60.152 57.895 0.00 0.00 37.67 3.85
1442 1455 0.517316 GTCACCTTGCCGTTCATCAC 59.483 55.000 0.00 0.00 0.00 3.06
1512 1525 2.037251 AGCTTGAACGTCACCATGTAGT 59.963 45.455 0.00 0.00 0.00 2.73
1706 1719 9.060347 CAGATAAGCAGTACCACATTTCATAAT 57.940 33.333 0.00 0.00 0.00 1.28
1714 1727 7.173907 GCATATTTCAGATAAGCAGTACCACAT 59.826 37.037 0.00 0.00 0.00 3.21
1771 1784 1.332997 GCACACATCATAAGCAGAGCC 59.667 52.381 0.00 0.00 0.00 4.70
1806 1819 2.572290 GTGAGGTTACCAGCACACTTT 58.428 47.619 18.14 0.00 38.52 2.66
2028 2041 2.569059 ACAGTAGCTGCATTGCATAGG 58.431 47.619 12.53 1.67 38.13 2.57
2051 2064 0.383860 GCGTGTTTGGTTGTCGTAGC 60.384 55.000 0.00 0.00 0.00 3.58
2079 2092 0.755079 AGCAGATATCTTGCGAGGCA 59.245 50.000 1.33 0.00 36.47 4.75
2080 2093 2.029470 AGTAGCAGATATCTTGCGAGGC 60.029 50.000 1.33 2.31 0.00 4.70
2081 2094 3.573598 CAGTAGCAGATATCTTGCGAGG 58.426 50.000 1.33 0.00 0.00 4.63
2082 2095 2.985809 GCAGTAGCAGATATCTTGCGAG 59.014 50.000 9.88 0.00 41.58 5.03
2083 2096 2.288457 GGCAGTAGCAGATATCTTGCGA 60.288 50.000 16.38 11.23 44.61 5.10
2084 2097 2.064762 GGCAGTAGCAGATATCTTGCG 58.935 52.381 16.38 2.91 44.61 4.85
2085 2098 3.117491 TGGCAGTAGCAGATATCTTGC 57.883 47.619 15.16 15.16 44.61 4.01
2086 2099 3.436015 GCATGGCAGTAGCAGATATCTTG 59.564 47.826 1.33 0.00 44.61 3.02
2087 2100 3.072038 TGCATGGCAGTAGCAGATATCTT 59.928 43.478 1.33 0.00 44.61 2.40
2088 2101 2.636403 TGCATGGCAGTAGCAGATATCT 59.364 45.455 0.00 0.00 44.61 1.98
2089 2102 3.049708 TGCATGGCAGTAGCAGATATC 57.950 47.619 7.81 0.00 44.61 1.63
2112 2125 8.904099 AAGTGTACAGTAGCAAGTATCTTTTT 57.096 30.769 3.00 0.00 0.00 1.94
2113 2126 8.904099 AAAGTGTACAGTAGCAAGTATCTTTT 57.096 30.769 3.00 0.00 30.74 2.27
2114 2127 8.904099 AAAAGTGTACAGTAGCAAGTATCTTT 57.096 30.769 3.00 0.00 33.34 2.52
2133 2146 9.573133 GGGACAAGACATGATTTAATAAAAGTG 57.427 33.333 0.00 0.00 0.00 3.16
2134 2147 9.533831 AGGGACAAGACATGATTTAATAAAAGT 57.466 29.630 0.00 0.00 0.00 2.66
2137 2150 8.250332 GCAAGGGACAAGACATGATTTAATAAA 58.750 33.333 0.00 0.00 0.00 1.40
2138 2151 7.415095 CGCAAGGGACAAGACATGATTTAATAA 60.415 37.037 0.00 0.00 0.00 1.40
2139 2152 6.038161 CGCAAGGGACAAGACATGATTTAATA 59.962 38.462 0.00 0.00 0.00 0.98
2140 2153 5.163622 CGCAAGGGACAAGACATGATTTAAT 60.164 40.000 0.00 0.00 0.00 1.40
2141 2154 4.155826 CGCAAGGGACAAGACATGATTTAA 59.844 41.667 0.00 0.00 0.00 1.52
2142 2155 3.689161 CGCAAGGGACAAGACATGATTTA 59.311 43.478 0.00 0.00 0.00 1.40
2143 2156 2.489329 CGCAAGGGACAAGACATGATTT 59.511 45.455 0.00 0.00 0.00 2.17
2144 2157 2.086869 CGCAAGGGACAAGACATGATT 58.913 47.619 0.00 0.00 0.00 2.57
2145 2158 1.742761 CGCAAGGGACAAGACATGAT 58.257 50.000 0.00 0.00 0.00 2.45
2146 2159 0.955428 GCGCAAGGGACAAGACATGA 60.955 55.000 0.30 0.00 38.28 3.07
2147 2160 1.236616 TGCGCAAGGGACAAGACATG 61.237 55.000 8.16 0.00 38.28 3.21
2148 2161 1.073025 TGCGCAAGGGACAAGACAT 59.927 52.632 8.16 0.00 38.28 3.06
2149 2162 1.891919 GTGCGCAAGGGACAAGACA 60.892 57.895 14.00 0.00 36.89 3.41
2150 2163 1.891919 TGTGCGCAAGGGACAAGAC 60.892 57.895 14.00 0.00 44.63 3.01
2151 2164 2.508436 TGTGCGCAAGGGACAAGA 59.492 55.556 14.00 0.00 44.63 3.02
2154 2167 0.035534 ATATGTGTGCGCAAGGGACA 60.036 50.000 14.00 13.50 45.48 4.02
2155 2168 0.657840 GATATGTGTGCGCAAGGGAC 59.342 55.000 14.00 7.46 37.52 4.46
2156 2169 0.463654 GGATATGTGTGCGCAAGGGA 60.464 55.000 14.00 0.00 38.28 4.20
2157 2170 1.447317 GGGATATGTGTGCGCAAGGG 61.447 60.000 14.00 0.00 38.28 3.95
2158 2171 1.447317 GGGGATATGTGTGCGCAAGG 61.447 60.000 14.00 0.00 38.28 3.61
2159 2172 1.775039 CGGGGATATGTGTGCGCAAG 61.775 60.000 14.00 0.00 43.44 4.01
2160 2173 1.817520 CGGGGATATGTGTGCGCAA 60.818 57.895 14.00 0.00 0.00 4.85
2161 2174 2.203001 CGGGGATATGTGTGCGCA 60.203 61.111 5.66 5.66 0.00 6.09
2162 2175 2.203015 ACGGGGATATGTGTGCGC 60.203 61.111 0.00 0.00 0.00 6.09
2163 2176 1.594293 GGACGGGGATATGTGTGCG 60.594 63.158 0.00 0.00 0.00 5.34
2164 2177 1.227853 GGGACGGGGATATGTGTGC 60.228 63.158 0.00 0.00 0.00 4.57
2165 2178 1.341913 TGGGGACGGGGATATGTGTG 61.342 60.000 0.00 0.00 0.00 3.82
2166 2179 0.401395 ATGGGGACGGGGATATGTGT 60.401 55.000 0.00 0.00 0.00 3.72
2167 2180 0.324943 GATGGGGACGGGGATATGTG 59.675 60.000 0.00 0.00 0.00 3.21
2168 2181 0.193574 AGATGGGGACGGGGATATGT 59.806 55.000 0.00 0.00 0.00 2.29
2169 2182 1.279271 GAAGATGGGGACGGGGATATG 59.721 57.143 0.00 0.00 0.00 1.78
2170 2183 1.657804 GAAGATGGGGACGGGGATAT 58.342 55.000 0.00 0.00 0.00 1.63
2171 2184 0.473117 GGAAGATGGGGACGGGGATA 60.473 60.000 0.00 0.00 0.00 2.59
2172 2185 1.770518 GGAAGATGGGGACGGGGAT 60.771 63.158 0.00 0.00 0.00 3.85
2173 2186 2.366435 GGAAGATGGGGACGGGGA 60.366 66.667 0.00 0.00 0.00 4.81
2174 2187 3.861797 CGGAAGATGGGGACGGGG 61.862 72.222 0.00 0.00 0.00 5.73
2175 2188 2.762459 TCGGAAGATGGGGACGGG 60.762 66.667 0.00 0.00 33.31 5.28
2176 2189 2.017559 GAGTCGGAAGATGGGGACGG 62.018 65.000 0.00 0.00 45.19 4.79
2177 2190 1.437986 GAGTCGGAAGATGGGGACG 59.562 63.158 0.00 0.00 45.19 4.79
2178 2191 1.437986 CGAGTCGGAAGATGGGGAC 59.562 63.158 4.10 0.00 45.19 4.46
2179 2192 2.423898 GCGAGTCGGAAGATGGGGA 61.424 63.158 15.52 0.00 45.19 4.81
2180 2193 2.107141 GCGAGTCGGAAGATGGGG 59.893 66.667 15.52 0.00 45.19 4.96
2181 2194 2.107141 GGCGAGTCGGAAGATGGG 59.893 66.667 15.52 0.00 45.19 4.00
2182 2195 1.961180 AAGGGCGAGTCGGAAGATGG 61.961 60.000 15.52 0.00 45.19 3.51
2183 2196 0.807667 CAAGGGCGAGTCGGAAGATG 60.808 60.000 15.52 0.00 45.19 2.90
2184 2197 1.258445 ACAAGGGCGAGTCGGAAGAT 61.258 55.000 15.52 0.00 45.19 2.40
2185 2198 1.874345 GACAAGGGCGAGTCGGAAGA 61.874 60.000 15.52 0.00 38.16 2.87
2186 2199 1.446272 GACAAGGGCGAGTCGGAAG 60.446 63.158 15.52 0.00 0.00 3.46
2187 2200 2.654877 GACAAGGGCGAGTCGGAA 59.345 61.111 15.52 0.00 0.00 4.30
2188 2201 3.379445 GGACAAGGGCGAGTCGGA 61.379 66.667 15.52 0.00 35.63 4.55
2189 2202 3.358076 GAGGACAAGGGCGAGTCGG 62.358 68.421 15.52 0.00 35.63 4.79
2190 2203 2.182030 GAGGACAAGGGCGAGTCG 59.818 66.667 8.54 8.54 35.63 4.18
2191 2204 2.182030 CGAGGACAAGGGCGAGTC 59.818 66.667 0.00 0.00 0.00 3.36
2192 2205 4.070552 GCGAGGACAAGGGCGAGT 62.071 66.667 0.00 0.00 0.00 4.18
2193 2206 3.764466 AGCGAGGACAAGGGCGAG 61.764 66.667 0.00 0.00 0.00 5.03
2194 2207 4.069232 CAGCGAGGACAAGGGCGA 62.069 66.667 0.00 0.00 0.00 5.54
2196 2209 2.579684 CTACCAGCGAGGACAAGGGC 62.580 65.000 5.19 0.00 41.22 5.19
2197 2210 1.517832 CTACCAGCGAGGACAAGGG 59.482 63.158 5.19 0.00 41.22 3.95
2198 2211 1.153549 GCTACCAGCGAGGACAAGG 60.154 63.158 5.19 0.00 41.22 3.61
2199 2212 1.153549 GGCTACCAGCGAGGACAAG 60.154 63.158 5.19 1.49 43.62 3.16
2200 2213 1.264749 ATGGCTACCAGCGAGGACAA 61.265 55.000 5.19 0.00 43.62 3.18
2201 2214 1.685765 ATGGCTACCAGCGAGGACA 60.686 57.895 5.19 0.00 43.62 4.02
2202 2215 1.227380 CATGGCTACCAGCGAGGAC 60.227 63.158 5.19 0.00 43.62 3.85
2203 2216 2.434843 CCATGGCTACCAGCGAGGA 61.435 63.158 0.00 0.00 43.62 3.71
2204 2217 2.109799 CCATGGCTACCAGCGAGG 59.890 66.667 0.00 0.00 43.62 4.63
2205 2218 2.590007 GCCATGGCTACCAGCGAG 60.590 66.667 29.98 0.00 43.62 5.03
2206 2219 4.529219 CGCCATGGCTACCAGCGA 62.529 66.667 33.07 0.00 46.41 4.93
2208 2221 3.204827 CACGCCATGGCTACCAGC 61.205 66.667 33.07 6.47 41.46 4.85
2209 2222 1.369091 GAACACGCCATGGCTACCAG 61.369 60.000 33.07 19.95 36.75 4.00
2210 2223 1.376683 GAACACGCCATGGCTACCA 60.377 57.895 33.07 0.00 39.32 3.25
2211 2224 0.676782 AAGAACACGCCATGGCTACC 60.677 55.000 33.07 17.26 39.32 3.18
2212 2225 1.135689 CAAAGAACACGCCATGGCTAC 60.136 52.381 33.07 18.57 39.32 3.58
2213 2226 1.164411 CAAAGAACACGCCATGGCTA 58.836 50.000 33.07 0.00 39.32 3.93
2214 2227 0.823356 ACAAAGAACACGCCATGGCT 60.823 50.000 33.07 15.91 39.32 4.75
2215 2228 0.387239 GACAAAGAACACGCCATGGC 60.387 55.000 27.67 27.67 37.85 4.40
2216 2229 0.240945 GGACAAAGAACACGCCATGG 59.759 55.000 7.63 7.63 0.00 3.66
2217 2230 0.240945 GGGACAAAGAACACGCCATG 59.759 55.000 0.00 0.00 0.00 3.66
2218 2231 0.110486 AGGGACAAAGAACACGCCAT 59.890 50.000 0.00 0.00 0.00 4.40
2219 2232 0.534203 GAGGGACAAAGAACACGCCA 60.534 55.000 0.00 0.00 0.00 5.69
2220 2233 0.534203 TGAGGGACAAAGAACACGCC 60.534 55.000 0.00 0.00 0.00 5.68
2221 2234 1.305201 TTGAGGGACAAAGAACACGC 58.695 50.000 0.00 0.00 35.39 5.34
2229 2242 2.687935 GTTCACTGCTTTGAGGGACAAA 59.312 45.455 0.00 0.00 44.79 2.83
2230 2243 2.297701 GTTCACTGCTTTGAGGGACAA 58.702 47.619 0.00 0.00 36.65 3.18
2231 2244 1.211703 TGTTCACTGCTTTGAGGGACA 59.788 47.619 0.00 0.00 0.00 4.02
2232 2245 1.604278 GTGTTCACTGCTTTGAGGGAC 59.396 52.381 0.00 0.00 0.00 4.46
2233 2246 1.476833 GGTGTTCACTGCTTTGAGGGA 60.477 52.381 2.98 0.00 0.00 4.20
2234 2247 0.954452 GGTGTTCACTGCTTTGAGGG 59.046 55.000 2.98 0.00 0.00 4.30
2235 2248 0.588252 CGGTGTTCACTGCTTTGAGG 59.412 55.000 2.98 0.00 0.00 3.86
2236 2249 1.581934 TCGGTGTTCACTGCTTTGAG 58.418 50.000 6.87 0.00 0.00 3.02
2237 2250 1.668751 GTTCGGTGTTCACTGCTTTGA 59.331 47.619 6.87 0.00 0.00 2.69
2238 2251 1.268539 GGTTCGGTGTTCACTGCTTTG 60.269 52.381 6.87 0.00 0.00 2.77
2239 2252 1.021968 GGTTCGGTGTTCACTGCTTT 58.978 50.000 6.87 0.00 0.00 3.51
2240 2253 0.107410 TGGTTCGGTGTTCACTGCTT 60.107 50.000 6.87 0.00 0.00 3.91
2241 2254 0.107410 TTGGTTCGGTGTTCACTGCT 60.107 50.000 6.87 0.00 0.00 4.24
2242 2255 0.736053 TTTGGTTCGGTGTTCACTGC 59.264 50.000 6.87 0.00 0.00 4.40
2243 2256 2.031157 GGATTTGGTTCGGTGTTCACTG 60.031 50.000 5.51 5.51 0.00 3.66
2244 2257 2.158667 AGGATTTGGTTCGGTGTTCACT 60.159 45.455 2.98 0.00 0.00 3.41
2245 2258 2.225727 GAGGATTTGGTTCGGTGTTCAC 59.774 50.000 0.00 0.00 0.00 3.18
2246 2259 2.500229 GAGGATTTGGTTCGGTGTTCA 58.500 47.619 0.00 0.00 0.00 3.18
2247 2260 1.463444 CGAGGATTTGGTTCGGTGTTC 59.537 52.381 0.00 0.00 0.00 3.18
2248 2261 1.071071 TCGAGGATTTGGTTCGGTGTT 59.929 47.619 0.00 0.00 35.21 3.32
2249 2262 0.682852 TCGAGGATTTGGTTCGGTGT 59.317 50.000 0.00 0.00 35.21 4.16
2250 2263 2.024176 ATCGAGGATTTGGTTCGGTG 57.976 50.000 0.00 0.00 35.21 4.94
2251 2264 2.781681 AATCGAGGATTTGGTTCGGT 57.218 45.000 0.00 0.00 35.21 4.69
2272 2285 1.212751 GGAAACGGAAGCATGGCAC 59.787 57.895 0.00 0.00 0.00 5.01
2273 2286 3.680156 GGAAACGGAAGCATGGCA 58.320 55.556 0.00 0.00 0.00 4.92
2285 2298 4.483476 ACAGCAATTAGAACACGGAAAC 57.517 40.909 0.00 0.00 0.00 2.78
2286 2299 4.819630 AGAACAGCAATTAGAACACGGAAA 59.180 37.500 0.00 0.00 0.00 3.13
2287 2300 4.385825 AGAACAGCAATTAGAACACGGAA 58.614 39.130 0.00 0.00 0.00 4.30
2288 2301 4.002906 AGAACAGCAATTAGAACACGGA 57.997 40.909 0.00 0.00 0.00 4.69
2289 2302 4.749245 AAGAACAGCAATTAGAACACGG 57.251 40.909 0.00 0.00 0.00 4.94
2290 2303 6.358030 CAGAAAAGAACAGCAATTAGAACACG 59.642 38.462 0.00 0.00 0.00 4.49
2291 2304 7.196331 ACAGAAAAGAACAGCAATTAGAACAC 58.804 34.615 0.00 0.00 0.00 3.32
2292 2305 7.333528 ACAGAAAAGAACAGCAATTAGAACA 57.666 32.000 0.00 0.00 0.00 3.18
2293 2306 8.131731 AGAACAGAAAAGAACAGCAATTAGAAC 58.868 33.333 0.00 0.00 0.00 3.01
2294 2307 8.225603 AGAACAGAAAAGAACAGCAATTAGAA 57.774 30.769 0.00 0.00 0.00 2.10
2295 2308 7.807977 AGAACAGAAAAGAACAGCAATTAGA 57.192 32.000 0.00 0.00 0.00 2.10
2296 2309 7.322222 CGAAGAACAGAAAAGAACAGCAATTAG 59.678 37.037 0.00 0.00 0.00 1.73
2297 2310 7.132213 CGAAGAACAGAAAAGAACAGCAATTA 58.868 34.615 0.00 0.00 0.00 1.40
2298 2311 5.973565 CGAAGAACAGAAAAGAACAGCAATT 59.026 36.000 0.00 0.00 0.00 2.32
2299 2312 5.066505 ACGAAGAACAGAAAAGAACAGCAAT 59.933 36.000 0.00 0.00 0.00 3.56
2300 2313 4.394920 ACGAAGAACAGAAAAGAACAGCAA 59.605 37.500 0.00 0.00 0.00 3.91
2301 2314 3.938963 ACGAAGAACAGAAAAGAACAGCA 59.061 39.130 0.00 0.00 0.00 4.41
2302 2315 4.537936 ACGAAGAACAGAAAAGAACAGC 57.462 40.909 0.00 0.00 0.00 4.40
2303 2316 5.005394 TCGAACGAAGAACAGAAAAGAACAG 59.995 40.000 0.00 0.00 0.00 3.16
2304 2317 4.865925 TCGAACGAAGAACAGAAAAGAACA 59.134 37.500 0.00 0.00 0.00 3.18
2305 2318 5.385396 TCGAACGAAGAACAGAAAAGAAC 57.615 39.130 0.00 0.00 0.00 3.01
2306 2319 6.598753 AATCGAACGAAGAACAGAAAAGAA 57.401 33.333 0.12 0.00 0.00 2.52
2307 2320 6.598753 AAATCGAACGAAGAACAGAAAAGA 57.401 33.333 0.12 0.00 0.00 2.52
2308 2321 7.564988 AGTAAATCGAACGAAGAACAGAAAAG 58.435 34.615 0.12 0.00 0.00 2.27
2309 2322 7.473027 AGTAAATCGAACGAAGAACAGAAAA 57.527 32.000 0.12 0.00 0.00 2.29
2310 2323 7.342194 CAAGTAAATCGAACGAAGAACAGAAA 58.658 34.615 0.12 0.00 0.00 2.52
2311 2324 6.563381 GCAAGTAAATCGAACGAAGAACAGAA 60.563 38.462 0.12 0.00 0.00 3.02
2312 2325 5.107607 GCAAGTAAATCGAACGAAGAACAGA 60.108 40.000 0.12 0.00 0.00 3.41
2313 2326 5.073478 GCAAGTAAATCGAACGAAGAACAG 58.927 41.667 0.12 0.00 0.00 3.16
2314 2327 4.508492 TGCAAGTAAATCGAACGAAGAACA 59.492 37.500 0.12 0.00 0.00 3.18
2315 2328 5.013861 TGCAAGTAAATCGAACGAAGAAC 57.986 39.130 0.12 0.30 0.00 3.01
2316 2329 5.264060 CTGCAAGTAAATCGAACGAAGAA 57.736 39.130 0.12 0.00 0.00 2.52
2317 2330 4.903638 CTGCAAGTAAATCGAACGAAGA 57.096 40.909 0.12 0.00 0.00 2.87
2332 2345 1.674221 GGGTACTGCTGAGACTGCAAG 60.674 57.143 0.00 0.00 37.82 4.01
2333 2346 0.321671 GGGTACTGCTGAGACTGCAA 59.678 55.000 0.00 0.00 37.82 4.08
2334 2347 0.831711 TGGGTACTGCTGAGACTGCA 60.832 55.000 0.00 0.00 36.88 4.41
2335 2348 0.390472 GTGGGTACTGCTGAGACTGC 60.390 60.000 0.00 0.00 0.00 4.40
2336 2349 0.969149 TGTGGGTACTGCTGAGACTG 59.031 55.000 0.00 0.00 0.00 3.51
2337 2350 0.969894 GTGTGGGTACTGCTGAGACT 59.030 55.000 0.00 0.00 0.00 3.24
2338 2351 0.388649 CGTGTGGGTACTGCTGAGAC 60.389 60.000 0.00 0.00 0.00 3.36
2339 2352 0.826256 ACGTGTGGGTACTGCTGAGA 60.826 55.000 0.00 0.00 0.00 3.27
2340 2353 0.667487 CACGTGTGGGTACTGCTGAG 60.667 60.000 7.58 0.00 0.00 3.35
2341 2354 1.110518 TCACGTGTGGGTACTGCTGA 61.111 55.000 16.51 0.00 0.00 4.26
2342 2355 0.249699 TTCACGTGTGGGTACTGCTG 60.250 55.000 16.51 0.00 0.00 4.41
2343 2356 0.249741 GTTCACGTGTGGGTACTGCT 60.250 55.000 16.51 0.00 0.00 4.24
2344 2357 0.249741 AGTTCACGTGTGGGTACTGC 60.250 55.000 16.51 0.00 0.00 4.40
2345 2358 1.340248 AGAGTTCACGTGTGGGTACTG 59.660 52.381 16.51 0.00 0.00 2.74
2346 2359 1.340248 CAGAGTTCACGTGTGGGTACT 59.660 52.381 16.51 11.75 0.00 2.73
2347 2360 1.604693 CCAGAGTTCACGTGTGGGTAC 60.605 57.143 16.51 7.33 0.00 3.34
2348 2361 0.677288 CCAGAGTTCACGTGTGGGTA 59.323 55.000 16.51 0.00 0.00 3.69
2349 2362 1.445942 CCAGAGTTCACGTGTGGGT 59.554 57.895 16.51 0.00 0.00 4.51
2350 2363 1.301716 CCCAGAGTTCACGTGTGGG 60.302 63.158 22.46 22.46 42.04 4.61
2351 2364 1.301716 CCCCAGAGTTCACGTGTGG 60.302 63.158 16.51 14.90 0.00 4.17
2352 2365 0.105964 TTCCCCAGAGTTCACGTGTG 59.894 55.000 16.51 5.75 0.00 3.82
2353 2366 0.834612 TTTCCCCAGAGTTCACGTGT 59.165 50.000 16.51 0.00 0.00 4.49
2354 2367 1.961793 TTTTCCCCAGAGTTCACGTG 58.038 50.000 9.94 9.94 0.00 4.49
2355 2368 2.721425 TTTTTCCCCAGAGTTCACGT 57.279 45.000 0.00 0.00 0.00 4.49
2371 2384 4.994217 CGCTGGTTTATGGATTTGGTTTTT 59.006 37.500 0.00 0.00 0.00 1.94
2372 2385 4.282195 TCGCTGGTTTATGGATTTGGTTTT 59.718 37.500 0.00 0.00 0.00 2.43
2373 2386 3.829601 TCGCTGGTTTATGGATTTGGTTT 59.170 39.130 0.00 0.00 0.00 3.27
2374 2387 3.426615 TCGCTGGTTTATGGATTTGGTT 58.573 40.909 0.00 0.00 0.00 3.67
2375 2388 3.080300 TCGCTGGTTTATGGATTTGGT 57.920 42.857 0.00 0.00 0.00 3.67
2376 2389 3.004734 GGATCGCTGGTTTATGGATTTGG 59.995 47.826 0.00 0.00 0.00 3.28
2377 2390 3.885297 AGGATCGCTGGTTTATGGATTTG 59.115 43.478 0.00 0.00 0.00 2.32
2378 2391 4.137543 GAGGATCGCTGGTTTATGGATTT 58.862 43.478 0.00 0.00 0.00 2.17
2379 2392 3.496870 GGAGGATCGCTGGTTTATGGATT 60.497 47.826 0.00 0.00 34.37 3.01
2380 2393 2.039084 GGAGGATCGCTGGTTTATGGAT 59.961 50.000 0.00 0.00 34.37 3.41
2381 2394 1.416401 GGAGGATCGCTGGTTTATGGA 59.584 52.381 0.00 0.00 34.37 3.41
2382 2395 1.543429 GGGAGGATCGCTGGTTTATGG 60.543 57.143 0.00 0.00 45.72 2.74
2383 2396 1.884235 GGGAGGATCGCTGGTTTATG 58.116 55.000 0.00 0.00 45.72 1.90
2406 2419 0.319555 TTCGAGCCTGTTTCGTCCAG 60.320 55.000 0.00 0.00 39.05 3.86
2407 2420 0.105224 TTTCGAGCCTGTTTCGTCCA 59.895 50.000 0.00 0.00 39.05 4.02
2408 2421 1.439679 ATTTCGAGCCTGTTTCGTCC 58.560 50.000 0.00 0.00 39.05 4.79
2409 2422 4.657075 TTAATTTCGAGCCTGTTTCGTC 57.343 40.909 0.00 0.00 39.05 4.20
2410 2423 4.514066 AGTTTAATTTCGAGCCTGTTTCGT 59.486 37.500 0.00 0.00 39.05 3.85
2411 2424 5.030874 AGTTTAATTTCGAGCCTGTTTCG 57.969 39.130 0.00 0.00 39.33 3.46
2412 2425 7.321772 GAAAGTTTAATTTCGAGCCTGTTTC 57.678 36.000 0.00 0.00 30.10 2.78
2423 2436 4.156182 CCACCGAGCGAAAGTTTAATTTC 58.844 43.478 0.00 0.00 36.11 2.17
2424 2437 3.610821 GCCACCGAGCGAAAGTTTAATTT 60.611 43.478 0.00 0.00 0.00 1.82
2425 2438 2.095415 GCCACCGAGCGAAAGTTTAATT 60.095 45.455 0.00 0.00 0.00 1.40
2426 2439 1.467342 GCCACCGAGCGAAAGTTTAAT 59.533 47.619 0.00 0.00 0.00 1.40
2427 2440 0.869730 GCCACCGAGCGAAAGTTTAA 59.130 50.000 0.00 0.00 0.00 1.52
2428 2441 0.249953 TGCCACCGAGCGAAAGTTTA 60.250 50.000 0.00 0.00 34.65 2.01
2429 2442 1.525077 TGCCACCGAGCGAAAGTTT 60.525 52.632 0.00 0.00 34.65 2.66
2430 2443 2.110213 TGCCACCGAGCGAAAGTT 59.890 55.556 0.00 0.00 34.65 2.66
2431 2444 2.665185 GTGCCACCGAGCGAAAGT 60.665 61.111 0.00 0.00 34.65 2.66
2432 2445 1.781025 TTTGTGCCACCGAGCGAAAG 61.781 55.000 0.00 0.00 34.65 2.62
2433 2446 1.169661 ATTTGTGCCACCGAGCGAAA 61.170 50.000 0.00 0.00 34.65 3.46
2434 2447 1.599518 ATTTGTGCCACCGAGCGAA 60.600 52.632 0.00 0.00 34.65 4.70
2435 2448 2.031919 ATTTGTGCCACCGAGCGA 59.968 55.556 0.00 0.00 34.65 4.93
2436 2449 2.176546 CATTTGTGCCACCGAGCG 59.823 61.111 0.00 0.00 34.65 5.03
2437 2450 1.503542 CTCATTTGTGCCACCGAGC 59.496 57.895 0.00 0.00 0.00 5.03
2438 2451 0.957395 AGCTCATTTGTGCCACCGAG 60.957 55.000 0.00 0.00 35.33 4.63
2439 2452 0.537143 AAGCTCATTTGTGCCACCGA 60.537 50.000 0.00 0.00 35.33 4.69
2440 2453 0.109597 GAAGCTCATTTGTGCCACCG 60.110 55.000 0.00 0.00 35.33 4.94
2441 2454 0.109597 CGAAGCTCATTTGTGCCACC 60.110 55.000 0.00 0.00 35.33 4.61
2442 2455 0.109597 CCGAAGCTCATTTGTGCCAC 60.110 55.000 1.27 0.00 35.33 5.01
2443 2456 0.250684 TCCGAAGCTCATTTGTGCCA 60.251 50.000 1.27 0.00 35.33 4.92
2444 2457 0.881118 TTCCGAAGCTCATTTGTGCC 59.119 50.000 1.27 0.00 35.33 5.01
2445 2458 2.704725 TTTCCGAAGCTCATTTGTGC 57.295 45.000 0.00 0.00 35.00 4.57
2446 2459 4.228912 AGTTTTCCGAAGCTCATTTGTG 57.771 40.909 0.00 0.00 0.00 3.33
2447 2460 5.705441 TCATAGTTTTCCGAAGCTCATTTGT 59.295 36.000 0.00 0.00 0.00 2.83
2448 2461 6.182039 TCATAGTTTTCCGAAGCTCATTTG 57.818 37.500 0.00 0.00 0.00 2.32
2449 2462 6.817765 TTCATAGTTTTCCGAAGCTCATTT 57.182 33.333 0.00 0.00 0.00 2.32
2450 2463 6.817765 TTTCATAGTTTTCCGAAGCTCATT 57.182 33.333 0.00 0.00 0.00 2.57
2451 2464 6.817765 TTTTCATAGTTTTCCGAAGCTCAT 57.182 33.333 0.00 0.00 0.00 2.90
2452 2465 6.627395 TTTTTCATAGTTTTCCGAAGCTCA 57.373 33.333 0.00 0.00 0.00 4.26
2472 2485 3.389687 CGAGCTCGCATGTATGTTTTT 57.610 42.857 25.07 0.00 0.00 1.94
2491 2504 0.655733 AAGTATTTTCATCGCCGGCG 59.344 50.000 42.13 42.13 41.35 6.46
2492 2505 1.668751 TGAAGTATTTTCATCGCCGGC 59.331 47.619 19.07 19.07 0.00 6.13
2493 2506 2.285602 CGTGAAGTATTTTCATCGCCGG 60.286 50.000 0.00 0.00 0.00 6.13
2494 2507 2.601314 TCGTGAAGTATTTTCATCGCCG 59.399 45.455 0.00 0.00 0.00 6.46
2495 2508 4.142988 TGTTCGTGAAGTATTTTCATCGCC 60.143 41.667 0.00 0.00 0.00 5.54
2496 2509 4.953269 TGTTCGTGAAGTATTTTCATCGC 58.047 39.130 0.00 0.00 0.00 4.58
2497 2510 7.586300 AGTTTTGTTCGTGAAGTATTTTCATCG 59.414 33.333 0.00 0.61 0.00 3.84
2498 2511 8.782533 AGTTTTGTTCGTGAAGTATTTTCATC 57.217 30.769 0.00 0.00 0.00 2.92
2499 2512 7.860872 GGAGTTTTGTTCGTGAAGTATTTTCAT 59.139 33.333 0.00 0.00 0.00 2.57
2500 2513 7.190871 GGAGTTTTGTTCGTGAAGTATTTTCA 58.809 34.615 0.00 0.00 0.00 2.69
2501 2514 6.356190 CGGAGTTTTGTTCGTGAAGTATTTTC 59.644 38.462 0.00 0.00 0.00 2.29
2502 2515 6.183360 ACGGAGTTTTGTTCGTGAAGTATTTT 60.183 34.615 0.00 0.00 37.78 1.82
2503 2516 5.295045 ACGGAGTTTTGTTCGTGAAGTATTT 59.705 36.000 0.00 0.00 37.78 1.40
2504 2517 4.812626 ACGGAGTTTTGTTCGTGAAGTATT 59.187 37.500 0.00 0.00 37.78 1.89
2505 2518 4.374399 ACGGAGTTTTGTTCGTGAAGTAT 58.626 39.130 0.00 0.00 37.78 2.12
2506 2519 3.784338 ACGGAGTTTTGTTCGTGAAGTA 58.216 40.909 0.00 0.00 37.78 2.24
2507 2520 2.624636 ACGGAGTTTTGTTCGTGAAGT 58.375 42.857 0.00 0.00 37.78 3.01
2522 2535 4.098044 TGGAGATGCTCTAAAGTAACGGAG 59.902 45.833 0.00 0.00 0.00 4.63
2523 2536 4.021229 TGGAGATGCTCTAAAGTAACGGA 58.979 43.478 0.00 0.00 0.00 4.69
2524 2537 4.113354 GTGGAGATGCTCTAAAGTAACGG 58.887 47.826 0.00 0.00 0.00 4.44
2525 2538 5.000012 AGTGGAGATGCTCTAAAGTAACG 58.000 43.478 0.00 0.00 0.00 3.18
2526 2539 5.038033 CGAGTGGAGATGCTCTAAAGTAAC 58.962 45.833 0.00 0.00 0.00 2.50
2527 2540 4.705507 ACGAGTGGAGATGCTCTAAAGTAA 59.294 41.667 0.00 0.00 0.00 2.24
2528 2541 4.270834 ACGAGTGGAGATGCTCTAAAGTA 58.729 43.478 0.00 0.00 0.00 2.24
2529 2542 3.093057 ACGAGTGGAGATGCTCTAAAGT 58.907 45.455 0.00 0.00 0.00 2.66
2530 2543 3.791973 ACGAGTGGAGATGCTCTAAAG 57.208 47.619 0.00 0.00 0.00 1.85
2531 2544 3.427638 CGAACGAGTGGAGATGCTCTAAA 60.428 47.826 0.00 0.00 0.00 1.85
2532 2545 2.097629 CGAACGAGTGGAGATGCTCTAA 59.902 50.000 0.00 0.00 0.00 2.10
2533 2546 1.671328 CGAACGAGTGGAGATGCTCTA 59.329 52.381 0.00 0.00 0.00 2.43
2534 2547 0.453793 CGAACGAGTGGAGATGCTCT 59.546 55.000 0.00 0.00 0.00 4.09
2535 2548 0.526524 CCGAACGAGTGGAGATGCTC 60.527 60.000 0.00 0.00 0.00 4.26
2536 2549 1.513158 CCGAACGAGTGGAGATGCT 59.487 57.895 0.00 0.00 0.00 3.79
2537 2550 2.167861 GCCGAACGAGTGGAGATGC 61.168 63.158 0.00 0.00 0.00 3.91
2538 2551 1.519455 GGCCGAACGAGTGGAGATG 60.519 63.158 0.00 0.00 0.00 2.90
2539 2552 2.722201 GGGCCGAACGAGTGGAGAT 61.722 63.158 0.00 0.00 0.00 2.75
2540 2553 3.379445 GGGCCGAACGAGTGGAGA 61.379 66.667 0.00 0.00 0.00 3.71
2541 2554 4.452733 GGGGCCGAACGAGTGGAG 62.453 72.222 0.00 0.00 0.00 3.86
2542 2555 3.588817 TAGGGGCCGAACGAGTGGA 62.589 63.158 0.00 0.00 0.00 4.02
2543 2556 3.072468 TAGGGGCCGAACGAGTGG 61.072 66.667 0.00 0.00 0.00 4.00
2544 2557 2.494918 CTAGGGGCCGAACGAGTG 59.505 66.667 0.00 0.00 0.00 3.51
2545 2558 2.758737 CCTAGGGGCCGAACGAGT 60.759 66.667 0.00 0.00 0.00 4.18
2559 2572 2.538512 TATTTTGCCGGGTGCGCCTA 62.539 55.000 17.49 0.00 45.60 3.93
2560 2573 3.929334 TATTTTGCCGGGTGCGCCT 62.929 57.895 17.49 0.00 45.60 5.52
2561 2574 2.781158 ATATTTTGCCGGGTGCGCC 61.781 57.895 8.12 8.12 45.60 6.53
2562 2575 1.588667 CATATTTTGCCGGGTGCGC 60.589 57.895 2.18 0.00 45.60 6.09
2563 2576 1.588667 GCATATTTTGCCGGGTGCG 60.589 57.895 2.18 0.00 46.15 5.34
2564 2577 4.418337 GCATATTTTGCCGGGTGC 57.582 55.556 2.18 0.00 46.15 5.01
2581 2594 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.