Multiple sequence alignment - TraesCS4D01G120600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G120600 chr4D 100.000 6596 0 0 1 6596 101658198 101651603 0.000000e+00 12181.0
1 TraesCS4D01G120600 chr4D 89.580 595 35 3 1 568 174159066 174158472 0.000000e+00 730.0
2 TraesCS4D01G120600 chr4D 87.449 247 21 2 566 802 174158441 174158195 6.520000e-70 276.0
3 TraesCS4D01G120600 chr4D 92.553 94 2 2 4894 4987 403409528 403409616 5.370000e-26 130.0
4 TraesCS4D01G120600 chr4B 94.477 2245 59 14 811 3018 145806948 145804732 0.000000e+00 3398.0
5 TraesCS4D01G120600 chr4B 96.806 1127 18 2 4886 6012 145804240 145803132 0.000000e+00 1866.0
6 TraesCS4D01G120600 chr4B 98.532 477 3 4 4365 4839 145804715 145804241 0.000000e+00 839.0
7 TraesCS4D01G120600 chr4B 91.935 434 25 5 6172 6596 145803133 145802701 3.400000e-167 599.0
8 TraesCS4D01G120600 chr4A 93.756 2242 84 20 806 3018 473686367 473688581 0.000000e+00 3314.0
9 TraesCS4D01G120600 chr4A 93.144 1196 73 5 3017 4205 606802060 606800867 0.000000e+00 1746.0
10 TraesCS4D01G120600 chr4A 96.193 893 34 0 5120 6012 473689290 473690182 0.000000e+00 1461.0
11 TraesCS4D01G120600 chr4A 94.963 536 18 4 4365 4898 473688598 473689126 0.000000e+00 832.0
12 TraesCS4D01G120600 chr4A 88.918 388 30 9 6219 6596 473690208 473690592 3.600000e-127 466.0
13 TraesCS4D01G120600 chr4A 93.258 89 6 0 4897 4985 691993349 691993437 1.490000e-26 132.0
14 TraesCS4D01G120600 chr5D 92.573 1158 77 5 3018 4170 100120353 100119200 0.000000e+00 1653.0
15 TraesCS4D01G120600 chr5D 96.970 165 5 0 6009 6173 525460786 525460622 1.810000e-70 278.0
16 TraesCS4D01G120600 chr5D 95.266 169 7 1 6005 6173 557506223 557506390 3.920000e-67 267.0
17 TraesCS4D01G120600 chr5D 84.524 168 23 3 3 169 432982939 432983104 5.290000e-36 163.0
18 TraesCS4D01G120600 chr5D 98.864 88 1 0 4279 4366 275419728 275419641 2.460000e-34 158.0
19 TraesCS4D01G120600 chr5D 87.324 71 5 4 1502 1570 491652748 491652816 1.970000e-10 78.7
20 TraesCS4D01G120600 chr5A 91.322 1210 101 2 3019 4225 3617522 3616314 0.000000e+00 1650.0
21 TraesCS4D01G120600 chr5A 91.000 1200 99 5 3019 4214 702498189 702496995 0.000000e+00 1609.0
22 TraesCS4D01G120600 chr3D 91.250 1200 93 5 3018 4214 355617208 355616018 0.000000e+00 1624.0
23 TraesCS4D01G120600 chr3D 97.590 166 4 0 6008 6173 331677262 331677097 1.080000e-72 285.0
24 TraesCS4D01G120600 chr3D 93.678 174 11 0 6011 6184 596059137 596058964 1.820000e-65 261.0
25 TraesCS4D01G120600 chr1D 91.142 1208 91 11 3017 4217 377915576 377914378 0.000000e+00 1624.0
26 TraesCS4D01G120600 chr1D 83.193 595 73 5 1 568 70609621 70609027 2.730000e-143 520.0
27 TraesCS4D01G120600 chr1D 96.491 171 6 0 6006 6176 452480170 452480000 3.890000e-72 283.0
28 TraesCS4D01G120600 chr1D 88.182 110 13 0 3 112 478021967 478021858 1.490000e-26 132.0
29 TraesCS4D01G120600 chr3B 91.100 1191 96 6 3028 4214 419120709 419121893 0.000000e+00 1604.0
30 TraesCS4D01G120600 chr3B 92.346 405 31 0 164 568 473518155 473518559 1.590000e-160 577.0
31 TraesCS4D01G120600 chr3B 95.679 162 7 0 3 164 473517967 473518128 1.820000e-65 261.0
32 TraesCS4D01G120600 chr3B 86.425 221 20 1 566 776 473518590 473518810 3.980000e-57 233.0
33 TraesCS4D01G120600 chr3B 92.593 108 7 1 4272 4379 175772576 175772682 3.190000e-33 154.0
34 TraesCS4D01G120600 chr3B 92.593 108 7 1 4272 4379 175773891 175773997 3.190000e-33 154.0
35 TraesCS4D01G120600 chr3B 93.258 89 6 0 4897 4985 658753914 658753826 1.490000e-26 132.0
36 TraesCS4D01G120600 chr3A 90.633 1217 96 11 3007 4217 444720829 444719625 0.000000e+00 1600.0
37 TraesCS4D01G120600 chr3A 85.882 595 57 8 1 568 543173490 543172896 5.660000e-170 608.0
38 TraesCS4D01G120600 chr6D 90.099 1212 105 9 3013 4217 465750994 465752197 0.000000e+00 1559.0
39 TraesCS4D01G120600 chr6D 95.783 166 7 0 6011 6176 61757676 61757511 1.090000e-67 268.0
40 TraesCS4D01G120600 chr6D 97.872 94 2 0 4273 4366 27179451 27179544 5.290000e-36 163.0
41 TraesCS4D01G120600 chr6D 92.632 95 2 2 4897 4990 146072907 146072817 1.490000e-26 132.0
42 TraesCS4D01G120600 chr6D 89.623 106 5 6 4893 4997 460573442 460573342 5.370000e-26 130.0
43 TraesCS4D01G120600 chr6D 91.071 56 4 1 1502 1557 83202303 83202357 2.550000e-09 75.0
44 TraesCS4D01G120600 chr2A 86.218 595 55 13 1 568 75348969 75348375 2.610000e-173 619.0
45 TraesCS4D01G120600 chr2A 86.640 247 23 4 566 802 75348344 75348098 1.410000e-66 265.0
46 TraesCS4D01G120600 chr2A 87.730 163 20 0 1 163 642684223 642684061 2.430000e-44 191.0
47 TraesCS4D01G120600 chr2A 97.059 102 1 2 4274 4374 153361847 153361947 3.160000e-38 171.0
48 TraesCS4D01G120600 chr2A 89.916 119 8 4 4281 4397 159582114 159581998 4.120000e-32 150.0
49 TraesCS4D01G120600 chr2A 92.708 96 5 2 4897 4991 96243042 96243136 3.210000e-28 137.0
50 TraesCS4D01G120600 chr2A 90.476 63 6 0 1509 1571 735351754 735351692 4.240000e-12 84.2
51 TraesCS4D01G120600 chr2A 88.462 52 4 2 1510 1561 554418531 554418580 1.990000e-05 62.1
52 TraesCS4D01G120600 chr6A 79.252 588 89 16 1 558 407941170 407941754 4.830000e-101 379.0
53 TraesCS4D01G120600 chr6A 90.184 163 16 0 1 163 180303674 180303836 5.180000e-51 213.0
54 TraesCS4D01G120600 chr2D 98.802 167 2 0 6009 6175 240791187 240791021 1.390000e-76 298.0
55 TraesCS4D01G120600 chr7B 95.266 169 8 0 6008 6176 741871702 741871534 1.090000e-67 268.0
56 TraesCS4D01G120600 chr7A 94.253 174 9 1 6003 6176 699482719 699482891 1.410000e-66 265.0
57 TraesCS4D01G120600 chr7A 91.411 163 14 0 1 163 427282818 427282980 2.390000e-54 224.0
58 TraesCS4D01G120600 chr7A 83.832 167 26 1 3 169 200640628 200640793 2.460000e-34 158.0
59 TraesCS4D01G120600 chr5B 94.286 105 4 2 4276 4379 257333311 257333208 6.850000e-35 159.0
60 TraesCS4D01G120600 chr1A 93.458 107 5 2 4276 4381 56623816 56623711 2.460000e-34 158.0
61 TraesCS4D01G120600 chr6B 91.228 114 5 4 4257 4366 29782723 29782611 4.120000e-32 150.0
62 TraesCS4D01G120600 chr6B 97.561 82 2 0 1 82 233404995 233404914 2.480000e-29 141.0
63 TraesCS4D01G120600 chr6B 93.258 89 6 0 4897 4985 532984617 532984705 1.490000e-26 132.0
64 TraesCS4D01G120600 chr6B 93.258 89 6 0 4897 4985 533181294 533181382 1.490000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G120600 chr4D 101651603 101658198 6595 True 12181.00 12181 100.000000 1 6596 1 chr4D.!!$R1 6595
1 TraesCS4D01G120600 chr4D 174158195 174159066 871 True 503.00 730 88.514500 1 802 2 chr4D.!!$R2 801
2 TraesCS4D01G120600 chr4B 145802701 145806948 4247 True 1675.50 3398 95.437500 811 6596 4 chr4B.!!$R1 5785
3 TraesCS4D01G120600 chr4A 606800867 606802060 1193 True 1746.00 1746 93.144000 3017 4205 1 chr4A.!!$R1 1188
4 TraesCS4D01G120600 chr4A 473686367 473690592 4225 False 1518.25 3314 93.457500 806 6596 4 chr4A.!!$F2 5790
5 TraesCS4D01G120600 chr5D 100119200 100120353 1153 True 1653.00 1653 92.573000 3018 4170 1 chr5D.!!$R1 1152
6 TraesCS4D01G120600 chr5A 3616314 3617522 1208 True 1650.00 1650 91.322000 3019 4225 1 chr5A.!!$R1 1206
7 TraesCS4D01G120600 chr5A 702496995 702498189 1194 True 1609.00 1609 91.000000 3019 4214 1 chr5A.!!$R2 1195
8 TraesCS4D01G120600 chr3D 355616018 355617208 1190 True 1624.00 1624 91.250000 3018 4214 1 chr3D.!!$R2 1196
9 TraesCS4D01G120600 chr1D 377914378 377915576 1198 True 1624.00 1624 91.142000 3017 4217 1 chr1D.!!$R2 1200
10 TraesCS4D01G120600 chr1D 70609027 70609621 594 True 520.00 520 83.193000 1 568 1 chr1D.!!$R1 567
11 TraesCS4D01G120600 chr3B 419120709 419121893 1184 False 1604.00 1604 91.100000 3028 4214 1 chr3B.!!$F1 1186
12 TraesCS4D01G120600 chr3B 473517967 473518810 843 False 357.00 577 91.483333 3 776 3 chr3B.!!$F3 773
13 TraesCS4D01G120600 chr3A 444719625 444720829 1204 True 1600.00 1600 90.633000 3007 4217 1 chr3A.!!$R1 1210
14 TraesCS4D01G120600 chr3A 543172896 543173490 594 True 608.00 608 85.882000 1 568 1 chr3A.!!$R2 567
15 TraesCS4D01G120600 chr6D 465750994 465752197 1203 False 1559.00 1559 90.099000 3013 4217 1 chr6D.!!$F3 1204
16 TraesCS4D01G120600 chr2A 75348098 75348969 871 True 442.00 619 86.429000 1 802 2 chr2A.!!$R4 801
17 TraesCS4D01G120600 chr6A 407941170 407941754 584 False 379.00 379 79.252000 1 558 1 chr6A.!!$F2 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 478 0.023354 GCGACGTCGTCAGCATAAAC 59.977 55.000 35.48 13.78 42.22 2.01 F
803 874 0.179121 TTGTCGTGAAGCTGTCGTGT 60.179 50.000 0.00 0.00 0.00 4.49 F
2039 2156 2.115291 GCCCCTCAATCTCGTTGGC 61.115 63.158 0.00 0.00 38.39 4.52 F
3591 3715 2.010817 CAAAGCGGCGTGTTCAAGC 61.011 57.895 9.37 2.38 0.00 4.01 F
4246 4384 0.174845 GGACGCCTTAAAATTGGGGC 59.825 55.000 0.00 0.00 39.52 5.80 F
4872 5013 0.586319 CCCACTGCACGTGTAAACAG 59.414 55.000 18.38 17.19 42.20 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2156 1.270518 CCCTCCATAGCTGTCGAATGG 60.271 57.143 6.16 6.16 41.33 3.16 R
2191 2308 2.542205 CGAGTTGTCAGTTGTGTCGGTA 60.542 50.000 0.00 0.00 0.00 4.02 R
3643 3772 1.604592 CCCCTTCCCCTAGGTCTCCT 61.605 65.000 8.29 0.00 37.71 3.69 R
4872 5013 0.244721 GCAGTTCCACCCATCTTTGC 59.755 55.000 0.00 0.00 0.00 3.68 R
5492 5664 0.982852 TGGGGATGATGACTCGCCTT 60.983 55.000 7.75 0.00 43.99 4.35 R
6338 6510 0.039035 TAAACCGCCTCAATTGCCCT 59.961 50.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 0.392998 ACTGCACCAGAATAAGCCGG 60.393 55.000 0.00 0.00 35.18 6.13
361 389 0.969894 AGTTCACCTTGAGACCCGAG 59.030 55.000 0.00 0.00 0.00 4.63
366 394 1.679898 CCTTGAGACCCGAGGCTTT 59.320 57.895 0.00 0.00 39.51 3.51
450 478 0.023354 GCGACGTCGTCAGCATAAAC 59.977 55.000 35.48 13.78 42.22 2.01
559 587 4.282957 TCCATGGCTATCACAAAAAGCAAA 59.717 37.500 6.96 0.00 38.01 3.68
622 683 3.097614 CCTGGTACTGGCTGTTAGTAGT 58.902 50.000 1.31 0.00 41.44 2.73
652 713 3.221771 CATCCAGTCCAACCACTTTTGA 58.778 45.455 0.00 0.00 0.00 2.69
679 740 2.813754 TCCTTTTGCTTTCATCACCTCG 59.186 45.455 0.00 0.00 0.00 4.63
709 770 3.121688 AGGCCAGGAGAGAGAATCAAAT 58.878 45.455 5.01 0.00 37.82 2.32
767 838 3.062774 GCGTGAATCTTCCTTGCTACTTC 59.937 47.826 0.00 0.00 0.00 3.01
776 847 1.959899 CTTGCTACTTCGCGCACCAG 61.960 60.000 8.75 1.48 35.60 4.00
802 873 0.229753 GTTGTCGTGAAGCTGTCGTG 59.770 55.000 0.00 0.00 0.00 4.35
803 874 0.179121 TTGTCGTGAAGCTGTCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
804 875 0.179121 TGTCGTGAAGCTGTCGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
993 1065 2.930019 TCCACCCACCCAGCTCAG 60.930 66.667 0.00 0.00 0.00 3.35
994 1066 4.729918 CCACCCACCCAGCTCAGC 62.730 72.222 0.00 0.00 0.00 4.26
995 1067 3.644606 CACCCACCCAGCTCAGCT 61.645 66.667 0.00 0.00 40.77 4.24
996 1068 3.325753 ACCCACCCAGCTCAGCTC 61.326 66.667 0.00 0.00 36.40 4.09
997 1069 3.324930 CCCACCCAGCTCAGCTCA 61.325 66.667 0.00 0.00 36.40 4.26
1078 1150 4.748144 CCCAGGCAAGCACCCTCC 62.748 72.222 0.00 0.00 0.00 4.30
1142 1224 5.422012 CCCTCTGGTTATTACTGCCAATTTT 59.578 40.000 0.00 0.00 0.00 1.82
1143 1225 6.332630 CCTCTGGTTATTACTGCCAATTTTG 58.667 40.000 0.00 0.00 0.00 2.44
1144 1226 5.719173 TCTGGTTATTACTGCCAATTTTGC 58.281 37.500 0.00 0.00 0.00 3.68
1145 1227 5.480073 TCTGGTTATTACTGCCAATTTTGCT 59.520 36.000 0.00 0.00 0.00 3.91
1146 1228 6.014669 TCTGGTTATTACTGCCAATTTTGCTT 60.015 34.615 0.00 0.00 0.00 3.91
1147 1229 5.931146 TGGTTATTACTGCCAATTTTGCTTG 59.069 36.000 0.00 0.00 0.00 4.01
1148 1230 5.163864 GGTTATTACTGCCAATTTTGCTTGC 60.164 40.000 0.00 0.00 0.00 4.01
1192 1275 4.960354 CGATCCGTCGGTCGAATATTATAC 59.040 45.833 23.27 0.00 44.00 1.47
1250 1334 2.640989 CTCCGTTCGTCCGACACA 59.359 61.111 0.00 0.00 0.00 3.72
1261 1345 2.786578 CGTCCGACACAAAATTTGTTGG 59.213 45.455 8.85 11.19 46.45 3.77
1296 1388 2.236146 AGTCACGGATTGATGCAGGTTA 59.764 45.455 0.00 0.00 36.32 2.85
1315 1407 5.911766 AGGTTATCCCTCTTGCTTACCTATT 59.088 40.000 0.00 0.00 40.71 1.73
1400 1492 2.755103 GTCTGATTCCAAACCCATCACC 59.245 50.000 0.00 0.00 0.00 4.02
1612 1706 3.980646 TTGTCATAGCACGCTGTTTTT 57.019 38.095 0.72 0.00 0.00 1.94
1869 1963 2.289010 CCATGGGAAAGTTCAAAGTGCC 60.289 50.000 2.85 0.00 0.00 5.01
1940 2056 9.950680 AATATATTGGTGAAACACGATGAAATC 57.049 29.630 0.00 0.00 39.98 2.17
1972 2089 3.778265 ACTTATTGTCCATGGCTGGTTT 58.222 40.909 6.96 0.00 43.61 3.27
2039 2156 2.115291 GCCCCTCAATCTCGTTGGC 61.115 63.158 0.00 0.00 38.39 4.52
2146 2263 2.704572 AGAATCAGAAACGCCTTGGAG 58.295 47.619 0.00 0.00 0.00 3.86
2167 2284 6.599244 TGGAGGTAAAGTTCTTTAGCATCATG 59.401 38.462 25.65 0.00 37.36 3.07
2415 2532 9.171877 AGAAGATACAAATTAGAAGAAAGCCTG 57.828 33.333 0.00 0.00 0.00 4.85
2632 2749 4.097741 TGACAAAAGCTTGCTTACACATGT 59.902 37.500 8.36 8.74 35.84 3.21
2839 2957 6.522165 CGAAAGCAATCCATATGAATTCGATG 59.478 38.462 3.65 11.46 38.52 3.84
2840 2958 5.306532 AGCAATCCATATGAATTCGATGC 57.693 39.130 3.65 0.00 0.00 3.91
3007 3125 5.756950 CAGCATTGCAACATTAAGTTCTG 57.243 39.130 11.91 0.00 38.74 3.02
3008 3126 5.224888 CAGCATTGCAACATTAAGTTCTGT 58.775 37.500 11.91 0.00 38.74 3.41
3009 3127 6.380995 CAGCATTGCAACATTAAGTTCTGTA 58.619 36.000 11.91 0.00 38.74 2.74
3010 3128 6.525628 CAGCATTGCAACATTAAGTTCTGTAG 59.474 38.462 11.91 0.00 38.74 2.74
3011 3129 5.287035 GCATTGCAACATTAAGTTCTGTAGC 59.713 40.000 0.00 0.00 38.74 3.58
3012 3130 6.380995 CATTGCAACATTAAGTTCTGTAGCA 58.619 36.000 0.00 0.00 38.74 3.49
3013 3131 6.573664 TTGCAACATTAAGTTCTGTAGCAT 57.426 33.333 0.00 0.00 38.74 3.79
3014 3132 7.680442 TTGCAACATTAAGTTCTGTAGCATA 57.320 32.000 0.00 0.00 38.74 3.14
3015 3133 7.307493 TGCAACATTAAGTTCTGTAGCATAG 57.693 36.000 0.00 0.00 38.74 2.23
3226 3347 3.706594 CCTCTCACCTAAGCCTAACATCA 59.293 47.826 0.00 0.00 0.00 3.07
3237 3358 2.711542 CCTAACATCAAAAGCCGGAGT 58.288 47.619 5.05 0.00 0.00 3.85
3372 3496 4.899239 CAGGTCCTCCGCCATCGC 62.899 72.222 0.00 0.00 39.05 4.58
3583 3707 3.785122 AAGGTTCCCAAAGCGGCGT 62.785 57.895 9.37 0.00 37.95 5.68
3584 3708 4.038080 GGTTCCCAAAGCGGCGTG 62.038 66.667 9.37 0.00 0.00 5.34
3591 3715 2.010817 CAAAGCGGCGTGTTCAAGC 61.011 57.895 9.37 2.38 0.00 4.01
3760 3890 4.440829 GGCCGGCCAGGGATTTCA 62.441 66.667 40.73 0.00 41.48 2.69
3870 4001 2.062448 AACAAGGGAGGAGGGGAGGT 62.062 60.000 0.00 0.00 0.00 3.85
4136 4274 3.148279 GCGAGGAGGTGGGACGAT 61.148 66.667 0.00 0.00 0.00 3.73
4242 4380 2.591133 CGGTTGGACGCCTTAAAATTG 58.409 47.619 0.00 0.00 0.00 2.32
4243 4381 2.669950 CGGTTGGACGCCTTAAAATTGG 60.670 50.000 0.00 0.00 0.00 3.16
4244 4382 2.353307 GGTTGGACGCCTTAAAATTGGG 60.353 50.000 0.00 0.00 0.00 4.12
4245 4383 1.551452 TGGACGCCTTAAAATTGGGG 58.449 50.000 0.00 0.00 41.34 4.96
4246 4384 0.174845 GGACGCCTTAAAATTGGGGC 59.825 55.000 0.00 0.00 39.52 5.80
4247 4385 0.892063 GACGCCTTAAAATTGGGGCA 59.108 50.000 0.00 0.00 44.27 5.36
4248 4386 1.273886 GACGCCTTAAAATTGGGGCAA 59.726 47.619 0.00 0.00 44.27 4.52
4249 4387 1.275010 ACGCCTTAAAATTGGGGCAAG 59.725 47.619 0.00 0.00 44.27 4.01
4250 4388 1.275010 CGCCTTAAAATTGGGGCAAGT 59.725 47.619 0.00 0.00 44.27 3.16
4251 4389 2.673893 CGCCTTAAAATTGGGGCAAGTC 60.674 50.000 0.00 0.00 44.27 3.01
4252 4390 2.567169 GCCTTAAAATTGGGGCAAGTCT 59.433 45.455 0.00 0.00 43.59 3.24
4253 4391 3.617288 GCCTTAAAATTGGGGCAAGTCTG 60.617 47.826 0.00 0.00 43.59 3.51
4254 4392 3.578282 CCTTAAAATTGGGGCAAGTCTGT 59.422 43.478 0.00 0.00 0.00 3.41
4255 4393 4.770010 CCTTAAAATTGGGGCAAGTCTGTA 59.230 41.667 0.00 0.00 0.00 2.74
4256 4394 5.105756 CCTTAAAATTGGGGCAAGTCTGTAG 60.106 44.000 0.00 0.00 0.00 2.74
4257 4395 1.839424 AATTGGGGCAAGTCTGTAGC 58.161 50.000 0.00 0.00 0.00 3.58
4258 4396 0.698238 ATTGGGGCAAGTCTGTAGCA 59.302 50.000 0.00 0.00 0.00 3.49
4286 4424 9.030452 AGATGAAACATATAGACATCTACTCCC 57.970 37.037 0.00 0.00 43.46 4.30
4287 4425 8.964533 ATGAAACATATAGACATCTACTCCCT 57.035 34.615 0.00 0.00 0.00 4.20
4288 4426 8.410673 TGAAACATATAGACATCTACTCCCTC 57.589 38.462 0.00 0.00 0.00 4.30
4289 4427 7.451877 TGAAACATATAGACATCTACTCCCTCC 59.548 40.741 0.00 0.00 0.00 4.30
4290 4428 5.502079 ACATATAGACATCTACTCCCTCCG 58.498 45.833 0.00 0.00 0.00 4.63
4291 4429 5.014333 ACATATAGACATCTACTCCCTCCGT 59.986 44.000 0.00 0.00 0.00 4.69
4292 4430 2.830651 AGACATCTACTCCCTCCGTT 57.169 50.000 0.00 0.00 0.00 4.44
4293 4431 2.657143 AGACATCTACTCCCTCCGTTC 58.343 52.381 0.00 0.00 0.00 3.95
4294 4432 1.682323 GACATCTACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
4295 4433 1.006758 ACATCTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
4296 4434 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
4297 4435 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
4298 4436 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
4299 4437 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
4300 4438 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
4301 4439 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4302 4440 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4303 4441 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4304 4442 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4305 4443 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4306 4444 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4307 4445 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4308 4446 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4309 4447 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4310 4448 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4311 4449 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4312 4450 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4313 4451 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4314 4452 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4315 4453 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4316 4454 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4317 4455 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4318 4456 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4319 4457 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4352 4490 9.449719 AGTACAAAGTTAGGTCATCTATTTTGG 57.550 33.333 0.00 0.00 37.29 3.28
4353 4491 9.444600 GTACAAAGTTAGGTCATCTATTTTGGA 57.555 33.333 7.15 0.00 37.29 3.53
4354 4492 8.934023 ACAAAGTTAGGTCATCTATTTTGGAA 57.066 30.769 7.15 0.00 37.29 3.53
4355 4493 8.793592 ACAAAGTTAGGTCATCTATTTTGGAAC 58.206 33.333 7.15 0.00 37.29 3.62
4356 4494 7.611213 AAGTTAGGTCATCTATTTTGGAACG 57.389 36.000 0.00 0.00 0.00 3.95
4357 4495 6.113411 AGTTAGGTCATCTATTTTGGAACGG 58.887 40.000 0.00 0.00 0.00 4.44
4358 4496 4.837093 AGGTCATCTATTTTGGAACGGA 57.163 40.909 0.00 0.00 0.00 4.69
4359 4497 4.770795 AGGTCATCTATTTTGGAACGGAG 58.229 43.478 0.00 0.00 0.00 4.63
4360 4498 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4361 4499 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4362 4500 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4363 4501 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4854 4995 6.919721 TGCACAGTTCTTAATTTTATCCACC 58.080 36.000 0.00 0.00 0.00 4.61
4872 5013 0.586319 CCCACTGCACGTGTAAACAG 59.414 55.000 18.38 17.19 42.20 3.16
4874 5015 0.655208 CACTGCACGTGTAAACAGCA 59.345 50.000 18.38 5.83 38.84 4.41
4900 5041 5.482175 AGATGGGTGGAACTGCTATATACTC 59.518 44.000 0.00 0.00 36.74 2.59
5184 5356 6.755542 ATAGCTAGCCCTCTCAAAGTTATT 57.244 37.500 12.13 0.00 0.00 1.40
5492 5664 1.043816 GATTCTCCGATCCTCAGCCA 58.956 55.000 0.00 0.00 0.00 4.75
5633 5805 1.823169 CTGCTTGTTGGGGCTTGCAT 61.823 55.000 0.00 0.00 0.00 3.96
5638 5810 3.320830 TTGGGGCTTGCATTGGGC 61.321 61.111 0.00 0.00 45.13 5.36
5790 5962 1.266989 GTTGGTGAAGTTGGCTAGTGC 59.733 52.381 0.00 0.00 38.76 4.40
5937 6109 9.674068 GTATACTGAGACTGATACATGGAGATA 57.326 37.037 0.00 0.00 0.00 1.98
5983 6155 1.078143 GTGCTTGGGCCCTCTGTAG 60.078 63.158 25.70 13.09 37.74 2.74
5984 6156 1.229496 TGCTTGGGCCCTCTGTAGA 60.229 57.895 25.70 0.00 37.74 2.59
6012 6184 4.573607 CCTCCGGTGCCTTTATTTTACTAC 59.426 45.833 0.00 0.00 0.00 2.73
6013 6185 5.425196 TCCGGTGCCTTTATTTTACTACT 57.575 39.130 0.00 0.00 0.00 2.57
6014 6186 5.422145 TCCGGTGCCTTTATTTTACTACTC 58.578 41.667 0.00 0.00 0.00 2.59
6015 6187 4.573607 CCGGTGCCTTTATTTTACTACTCC 59.426 45.833 0.00 0.00 0.00 3.85
6016 6188 4.573607 CGGTGCCTTTATTTTACTACTCCC 59.426 45.833 0.00 0.00 0.00 4.30
6017 6189 5.628433 CGGTGCCTTTATTTTACTACTCCCT 60.628 44.000 0.00 0.00 0.00 4.20
6018 6190 5.821470 GGTGCCTTTATTTTACTACTCCCTC 59.179 44.000 0.00 0.00 0.00 4.30
6019 6191 5.821470 GTGCCTTTATTTTACTACTCCCTCC 59.179 44.000 0.00 0.00 0.00 4.30
6020 6192 5.055144 GCCTTTATTTTACTACTCCCTCCG 58.945 45.833 0.00 0.00 0.00 4.63
6021 6193 5.396101 GCCTTTATTTTACTACTCCCTCCGT 60.396 44.000 0.00 0.00 0.00 4.69
6022 6194 6.647229 CCTTTATTTTACTACTCCCTCCGTT 58.353 40.000 0.00 0.00 0.00 4.44
6023 6195 6.760298 CCTTTATTTTACTACTCCCTCCGTTC 59.240 42.308 0.00 0.00 0.00 3.95
6024 6196 4.750021 ATTTTACTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
6025 6197 1.755179 TTACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
6026 6198 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
6027 6199 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
6028 6200 1.180029 CTACTCCCTCCGTTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
6029 6201 1.755380 CTACTCCCTCCGTTCCGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
6030 6202 0.249398 ACTCCCTCCGTTCCGAAATG 59.751 55.000 0.00 0.00 0.00 2.32
6031 6203 0.249398 CTCCCTCCGTTCCGAAATGT 59.751 55.000 0.00 0.00 0.00 2.71
6032 6204 1.479323 CTCCCTCCGTTCCGAAATGTA 59.521 52.381 0.00 0.00 0.00 2.29
6033 6205 1.901159 TCCCTCCGTTCCGAAATGTAA 59.099 47.619 0.00 0.00 0.00 2.41
6034 6206 2.093869 TCCCTCCGTTCCGAAATGTAAG 60.094 50.000 0.00 0.00 0.00 2.34
6035 6207 2.354403 CCCTCCGTTCCGAAATGTAAGT 60.354 50.000 0.00 0.00 0.00 2.24
6036 6208 2.928116 CCTCCGTTCCGAAATGTAAGTC 59.072 50.000 0.00 0.00 0.00 3.01
6037 6209 3.368116 CCTCCGTTCCGAAATGTAAGTCT 60.368 47.826 0.00 0.00 0.00 3.24
6038 6210 4.243270 CTCCGTTCCGAAATGTAAGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
6039 6211 4.634199 TCCGTTCCGAAATGTAAGTCTTT 58.366 39.130 0.00 0.00 0.00 2.52
6040 6212 4.449743 TCCGTTCCGAAATGTAAGTCTTTG 59.550 41.667 0.00 0.00 0.00 2.77
6041 6213 4.212636 CCGTTCCGAAATGTAAGTCTTTGT 59.787 41.667 0.00 0.00 0.00 2.83
6042 6214 5.406175 CCGTTCCGAAATGTAAGTCTTTGTA 59.594 40.000 0.00 0.00 0.00 2.41
6043 6215 6.400727 CCGTTCCGAAATGTAAGTCTTTGTAG 60.401 42.308 0.00 0.00 0.00 2.74
6044 6216 6.364165 CGTTCCGAAATGTAAGTCTTTGTAGA 59.636 38.462 0.00 0.00 0.00 2.59
6045 6217 7.410513 CGTTCCGAAATGTAAGTCTTTGTAGAG 60.411 40.741 0.00 0.00 0.00 2.43
6046 6218 7.223260 TCCGAAATGTAAGTCTTTGTAGAGA 57.777 36.000 0.00 0.00 0.00 3.10
6047 6219 7.837863 TCCGAAATGTAAGTCTTTGTAGAGAT 58.162 34.615 0.00 0.00 0.00 2.75
6048 6220 8.311836 TCCGAAATGTAAGTCTTTGTAGAGATT 58.688 33.333 0.00 0.00 0.00 2.40
6049 6221 8.596380 CCGAAATGTAAGTCTTTGTAGAGATTC 58.404 37.037 0.00 0.00 0.00 2.52
6050 6222 8.596380 CGAAATGTAAGTCTTTGTAGAGATTCC 58.404 37.037 0.00 0.00 0.00 3.01
6051 6223 9.436957 GAAATGTAAGTCTTTGTAGAGATTCCA 57.563 33.333 0.00 0.00 0.00 3.53
6052 6224 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
6053 6225 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
6054 6226 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
6055 6227 8.740906 TGTAAGTCTTTGTAGAGATTCCACTAG 58.259 37.037 0.00 0.00 0.00 2.57
6056 6228 8.958506 GTAAGTCTTTGTAGAGATTCCACTAGA 58.041 37.037 0.00 0.00 0.00 2.43
6057 6229 8.602472 AAGTCTTTGTAGAGATTCCACTAGAT 57.398 34.615 0.00 0.00 0.00 1.98
6058 6230 8.006298 AGTCTTTGTAGAGATTCCACTAGATG 57.994 38.462 0.00 0.00 0.00 2.90
6059 6231 7.836685 AGTCTTTGTAGAGATTCCACTAGATGA 59.163 37.037 0.00 0.00 0.00 2.92
6060 6232 8.470805 GTCTTTGTAGAGATTCCACTAGATGAA 58.529 37.037 0.00 0.00 0.00 2.57
6061 6233 8.470805 TCTTTGTAGAGATTCCACTAGATGAAC 58.529 37.037 0.00 0.00 0.00 3.18
6062 6234 7.962995 TTGTAGAGATTCCACTAGATGAACT 57.037 36.000 0.00 0.00 0.00 3.01
6063 6235 9.475620 TTTGTAGAGATTCCACTAGATGAACTA 57.524 33.333 0.00 0.00 0.00 2.24
6064 6236 8.453238 TGTAGAGATTCCACTAGATGAACTAC 57.547 38.462 0.00 7.33 0.00 2.73
6065 6237 8.053355 TGTAGAGATTCCACTAGATGAACTACA 58.947 37.037 15.50 15.50 34.91 2.74
6066 6238 9.073475 GTAGAGATTCCACTAGATGAACTACAT 57.927 37.037 0.00 0.00 42.47 2.29
6068 6240 9.073475 AGAGATTCCACTAGATGAACTACATAC 57.927 37.037 0.00 0.00 39.56 2.39
6069 6241 7.877003 AGATTCCACTAGATGAACTACATACG 58.123 38.462 0.00 0.00 39.56 3.06
6070 6242 6.387041 TTCCACTAGATGAACTACATACGG 57.613 41.667 0.00 0.00 39.56 4.02
6071 6243 5.687780 TCCACTAGATGAACTACATACGGA 58.312 41.667 0.00 0.00 39.56 4.69
6072 6244 5.763698 TCCACTAGATGAACTACATACGGAG 59.236 44.000 0.00 0.00 39.56 4.63
6073 6245 5.453648 CACTAGATGAACTACATACGGAGC 58.546 45.833 0.00 0.00 39.56 4.70
6074 6246 5.008712 CACTAGATGAACTACATACGGAGCA 59.991 44.000 0.00 0.00 39.56 4.26
6075 6247 5.593095 ACTAGATGAACTACATACGGAGCAA 59.407 40.000 0.00 0.00 39.56 3.91
6076 6248 5.339008 AGATGAACTACATACGGAGCAAA 57.661 39.130 0.00 0.00 39.56 3.68
6077 6249 5.730550 AGATGAACTACATACGGAGCAAAA 58.269 37.500 0.00 0.00 39.56 2.44
6078 6250 6.349300 AGATGAACTACATACGGAGCAAAAT 58.651 36.000 0.00 0.00 39.56 1.82
6079 6251 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
6080 6252 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
6081 6253 5.935206 TGAACTACATACGGAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
6082 6254 6.597672 TGAACTACATACGGAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
6083 6255 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
6084 6256 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
6085 6257 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
6086 6258 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
6087 6259 6.866480 ACATACGGAGCAAAATGAATGAATT 58.134 32.000 0.00 0.00 0.00 2.17
6088 6260 6.974622 ACATACGGAGCAAAATGAATGAATTC 59.025 34.615 0.00 0.00 37.31 2.17
6117 6289 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
6133 6305 6.085555 ACATCCGTATGTAGTTCATAGTGG 57.914 41.667 0.00 2.99 44.66 4.00
6134 6306 5.831525 ACATCCGTATGTAGTTCATAGTGGA 59.168 40.000 11.01 11.01 44.66 4.02
6135 6307 6.322969 ACATCCGTATGTAGTTCATAGTGGAA 59.677 38.462 12.08 0.00 44.66 3.53
6136 6308 6.971726 TCCGTATGTAGTTCATAGTGGAAT 57.028 37.500 7.73 0.00 39.60 3.01
6137 6309 6.978338 TCCGTATGTAGTTCATAGTGGAATC 58.022 40.000 7.73 0.00 39.60 2.52
6138 6310 6.776116 TCCGTATGTAGTTCATAGTGGAATCT 59.224 38.462 7.73 0.00 39.60 2.40
6139 6311 7.040617 TCCGTATGTAGTTCATAGTGGAATCTC 60.041 40.741 7.73 0.00 39.60 2.75
6140 6312 7.040340 CCGTATGTAGTTCATAGTGGAATCTCT 60.040 40.741 3.20 0.00 39.36 3.10
6141 6313 9.000486 CGTATGTAGTTCATAGTGGAATCTCTA 58.000 37.037 0.00 0.00 39.36 2.43
6143 6315 8.768501 ATGTAGTTCATAGTGGAATCTCTACA 57.231 34.615 0.00 0.00 37.82 2.74
6144 6316 8.589701 TGTAGTTCATAGTGGAATCTCTACAA 57.410 34.615 0.00 0.00 34.07 2.41
6145 6317 9.031537 TGTAGTTCATAGTGGAATCTCTACAAA 57.968 33.333 0.00 0.00 34.07 2.83
6146 6318 9.522804 GTAGTTCATAGTGGAATCTCTACAAAG 57.477 37.037 0.00 0.00 30.38 2.77
6147 6319 8.367660 AGTTCATAGTGGAATCTCTACAAAGA 57.632 34.615 0.00 0.00 29.47 2.52
6148 6320 8.254508 AGTTCATAGTGGAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 29.47 3.01
6149 6321 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
6150 6322 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
6151 6323 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
6154 6326 8.140112 AGTGGAATCTCTACAAAGACTTATGT 57.860 34.615 7.75 7.75 29.47 2.29
6155 6327 8.598041 AGTGGAATCTCTACAAAGACTTATGTT 58.402 33.333 7.88 0.00 29.47 2.71
6156 6328 9.220767 GTGGAATCTCTACAAAGACTTATGTTT 57.779 33.333 7.88 0.00 0.00 2.83
6162 6334 9.924650 TCTCTACAAAGACTTATGTTTAGGAAC 57.075 33.333 7.88 0.00 36.29 3.62
6163 6335 8.752766 TCTACAAAGACTTATGTTTAGGAACG 57.247 34.615 7.88 0.00 38.65 3.95
6164 6336 6.796705 ACAAAGACTTATGTTTAGGAACGG 57.203 37.500 0.00 0.00 38.65 4.44
6165 6337 6.527423 ACAAAGACTTATGTTTAGGAACGGA 58.473 36.000 0.00 0.00 38.65 4.69
6166 6338 6.649557 ACAAAGACTTATGTTTAGGAACGGAG 59.350 38.462 0.00 0.00 38.65 4.63
6167 6339 5.340439 AGACTTATGTTTAGGAACGGAGG 57.660 43.478 0.00 0.00 38.65 4.30
6168 6340 4.161754 AGACTTATGTTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 38.65 4.30
6169 6341 4.098894 ACTTATGTTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 38.65 4.20
6170 6342 4.161754 ACTTATGTTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 38.65 4.30
6171 6343 2.019807 TGTTTAGGAACGGAGGGAGT 57.980 50.000 0.00 0.00 38.65 3.85
6172 6344 3.173953 TGTTTAGGAACGGAGGGAGTA 57.826 47.619 0.00 0.00 38.65 2.59
6176 6348 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
6203 6375 4.359105 ACTCTGCCTTGTAACAGGGTATA 58.641 43.478 0.00 0.00 45.73 1.47
6243 6415 4.589798 TGTTAGCTAGTGGTTTACCTGACA 59.410 41.667 0.00 0.00 36.82 3.58
6316 6488 9.834628 TTGTCGTATCAAAGAAACCATAATTTC 57.165 29.630 0.00 0.00 38.62 2.17
6344 6516 5.486063 TGTAAGTCAATAAGAGGTAGGGCAA 59.514 40.000 0.00 0.00 0.00 4.52
6357 6529 0.039035 AGGGCAATTGAGGCGGTTTA 59.961 50.000 10.34 0.00 34.40 2.01
6358 6530 0.892063 GGGCAATTGAGGCGGTTTAA 59.108 50.000 10.34 0.00 34.40 1.52
6360 6532 2.289133 GGGCAATTGAGGCGGTTTAAAA 60.289 45.455 10.34 0.00 34.40 1.52
6417 6597 2.266279 TCAAAACGGGAAGAGGGAGAT 58.734 47.619 0.00 0.00 0.00 2.75
6455 6635 7.771927 AGATTGAAGGAATGACAAACTGAAT 57.228 32.000 0.00 0.00 0.00 2.57
6518 6699 2.688477 TCCAACAAAAGCCCCTTCAAT 58.312 42.857 0.00 0.00 0.00 2.57
6537 6718 4.398988 TCAATTTCTGTCCCATTTCATCCG 59.601 41.667 0.00 0.00 0.00 4.18
6551 6732 5.926214 TTTCATCCGTCACGAAAACATTA 57.074 34.783 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 1.001641 ACACTTCATGAGGCCTGGC 60.002 57.895 12.00 11.05 0.00 4.85
450 478 1.257936 CGACAACACAAAGACTGTCCG 59.742 52.381 3.76 0.00 35.47 4.79
559 587 3.715834 CAGGGAGGAAGATCATTTCTCCT 59.284 47.826 21.84 13.10 35.77 3.69
622 683 4.221422 GACTGGATGGCGGCGCTA 62.221 66.667 32.30 27.83 0.00 4.26
679 740 1.209261 CTCTCCTGGCCTTTCCTCTTC 59.791 57.143 3.32 0.00 35.26 2.87
709 770 3.491104 GGTGTTTTAACATTTCCCGTGCA 60.491 43.478 0.00 0.00 41.59 4.57
767 838 1.374252 AACTTCCTACTGGTGCGCG 60.374 57.895 0.00 0.00 34.23 6.86
776 847 2.731976 CAGCTTCACGACAACTTCCTAC 59.268 50.000 0.00 0.00 0.00 3.18
802 873 3.206150 TGTCACCTTTGCTGAGAAGAAC 58.794 45.455 0.00 0.00 0.00 3.01
803 874 3.558931 TGTCACCTTTGCTGAGAAGAA 57.441 42.857 0.00 0.00 0.00 2.52
804 875 3.558931 TTGTCACCTTTGCTGAGAAGA 57.441 42.857 0.00 0.00 0.00 2.87
838 909 1.451028 GGCCCACATGTGCTCTCTC 60.451 63.158 20.81 4.77 0.00 3.20
993 1065 1.963338 GCGGTAGGCCATGATGAGC 60.963 63.158 5.01 0.00 34.80 4.26
994 1066 4.368391 GCGGTAGGCCATGATGAG 57.632 61.111 5.01 0.00 34.80 2.90
1078 1150 3.368501 TGGGGGAGGAGAGGGAGG 61.369 72.222 0.00 0.00 0.00 4.30
1192 1275 2.658593 GACGCGATGTGATCCCGG 60.659 66.667 15.93 0.00 35.04 5.73
1219 1302 1.330655 ACGGAGGGCACATCTGTAGG 61.331 60.000 0.00 0.00 34.50 3.18
1250 1334 3.389221 GCACATCGTCCCAACAAATTTT 58.611 40.909 0.00 0.00 0.00 1.82
1261 1345 1.478137 GTGACTATCGCACATCGTCC 58.522 55.000 0.00 0.00 39.67 4.79
1296 1388 3.395941 CCCAATAGGTAAGCAAGAGGGAT 59.604 47.826 0.00 0.00 35.81 3.85
1334 1426 3.593442 TTCAGGACCAAATTGACCTGT 57.407 42.857 25.42 5.88 46.68 4.00
1400 1492 5.980116 ACACTACAGCTTGCTAATTATCTCG 59.020 40.000 0.00 0.00 0.00 4.04
1520 1612 6.735678 TTTATTTAGCGAGACATTGCTCAA 57.264 33.333 0.00 0.00 43.03 3.02
1612 1706 7.402054 TCTGTCAATCCTAATAAGCAAGGAAA 58.598 34.615 0.00 0.00 44.87 3.13
1869 1963 1.398390 GATAAGTTGGGCTTGCGAGTG 59.602 52.381 2.14 0.00 38.05 3.51
1940 2056 7.483307 CCATGGACAATAAGTTTACTGATTGG 58.517 38.462 19.40 3.01 45.20 3.16
1972 2089 8.548877 AGAATGTAAATCACCTAAAGGCTAAGA 58.451 33.333 0.00 0.00 39.32 2.10
2039 2156 1.270518 CCCTCCATAGCTGTCGAATGG 60.271 57.143 6.16 6.16 41.33 3.16
2146 2263 6.194796 TGCATGATGCTAAAGAACTTTACC 57.805 37.500 19.19 0.00 45.31 2.85
2190 2307 3.450578 GAGTTGTCAGTTGTGTCGGTAA 58.549 45.455 0.00 0.00 0.00 2.85
2191 2308 2.542205 CGAGTTGTCAGTTGTGTCGGTA 60.542 50.000 0.00 0.00 0.00 4.02
2415 2532 3.762779 GCATATGCAAACTGGAACTGTC 58.237 45.455 22.84 0.00 39.39 3.51
2839 2957 0.387929 TGGATCATAAGGACGACGGC 59.612 55.000 0.00 0.00 0.00 5.68
2840 2958 2.882927 TTGGATCATAAGGACGACGG 57.117 50.000 0.00 0.00 0.00 4.79
3237 3358 3.064491 TAGATGGCTCGGTCGGGGA 62.064 63.158 0.00 0.00 0.00 4.81
3383 3507 3.110178 GAGGTCGTCGTTTGGCGG 61.110 66.667 0.00 0.00 41.72 6.13
3583 3707 1.896660 GCCGTTCCCTGCTTGAACA 60.897 57.895 12.00 0.00 41.70 3.18
3584 3708 2.954611 GCCGTTCCCTGCTTGAAC 59.045 61.111 0.00 0.00 38.95 3.18
3591 3715 4.680237 TCACAGCGCCGTTCCCTG 62.680 66.667 2.29 0.00 0.00 4.45
3643 3772 1.604592 CCCCTTCCCCTAGGTCTCCT 61.605 65.000 8.29 0.00 37.71 3.69
3760 3890 2.132352 GCGGGGATCTAGTTCGGGT 61.132 63.158 0.00 0.00 0.00 5.28
4225 4363 1.896465 CCCCAATTTTAAGGCGTCCAA 59.104 47.619 0.00 0.00 0.00 3.53
4226 4364 1.551452 CCCCAATTTTAAGGCGTCCA 58.449 50.000 0.00 0.00 0.00 4.02
4227 4365 0.174845 GCCCCAATTTTAAGGCGTCC 59.825 55.000 0.00 0.00 35.30 4.79
4228 4366 3.733236 GCCCCAATTTTAAGGCGTC 57.267 52.632 0.00 0.00 35.30 5.19
4231 4369 2.567169 AGACTTGCCCCAATTTTAAGGC 59.433 45.455 0.00 0.00 45.96 4.35
4232 4370 3.578282 ACAGACTTGCCCCAATTTTAAGG 59.422 43.478 0.00 0.00 0.00 2.69
4233 4371 4.871933 ACAGACTTGCCCCAATTTTAAG 57.128 40.909 0.00 0.00 0.00 1.85
4234 4372 4.219725 GCTACAGACTTGCCCCAATTTTAA 59.780 41.667 0.00 0.00 0.00 1.52
4235 4373 3.761752 GCTACAGACTTGCCCCAATTTTA 59.238 43.478 0.00 0.00 0.00 1.52
4236 4374 2.562738 GCTACAGACTTGCCCCAATTTT 59.437 45.455 0.00 0.00 0.00 1.82
4237 4375 2.171003 GCTACAGACTTGCCCCAATTT 58.829 47.619 0.00 0.00 0.00 1.82
4238 4376 1.075374 TGCTACAGACTTGCCCCAATT 59.925 47.619 0.00 0.00 0.00 2.32
4239 4377 0.698238 TGCTACAGACTTGCCCCAAT 59.302 50.000 0.00 0.00 0.00 3.16
4240 4378 0.698238 ATGCTACAGACTTGCCCCAA 59.302 50.000 0.00 0.00 0.00 4.12
4241 4379 1.486310 CTATGCTACAGACTTGCCCCA 59.514 52.381 0.00 0.00 0.00 4.96
4242 4380 1.762957 TCTATGCTACAGACTTGCCCC 59.237 52.381 0.00 0.00 0.00 5.80
4243 4381 3.070159 TCATCTATGCTACAGACTTGCCC 59.930 47.826 0.00 0.00 0.00 5.36
4244 4382 4.327982 TCATCTATGCTACAGACTTGCC 57.672 45.455 0.00 0.00 0.00 4.52
4245 4383 5.582269 TGTTTCATCTATGCTACAGACTTGC 59.418 40.000 0.00 0.00 0.00 4.01
4246 4384 7.783090 ATGTTTCATCTATGCTACAGACTTG 57.217 36.000 0.00 0.00 0.00 3.16
4280 4418 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4281 4419 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4282 4420 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4283 4421 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4284 4422 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4285 4423 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4286 4424 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4287 4425 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4288 4426 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4289 4427 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4290 4428 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4291 4429 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4292 4430 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
4293 4431 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
4326 4464 9.449719 CCAAAATAGATGACCTAACTTTGTACT 57.550 33.333 0.00 0.00 35.07 2.73
4327 4465 9.444600 TCCAAAATAGATGACCTAACTTTGTAC 57.555 33.333 0.00 0.00 35.07 2.90
4329 4467 8.793592 GTTCCAAAATAGATGACCTAACTTTGT 58.206 33.333 0.00 0.00 35.07 2.83
4330 4468 7.962918 CGTTCCAAAATAGATGACCTAACTTTG 59.037 37.037 0.00 0.00 35.80 2.77
4331 4469 7.120726 CCGTTCCAAAATAGATGACCTAACTTT 59.879 37.037 0.00 0.00 0.00 2.66
4332 4470 6.598064 CCGTTCCAAAATAGATGACCTAACTT 59.402 38.462 0.00 0.00 0.00 2.66
4333 4471 6.070424 TCCGTTCCAAAATAGATGACCTAACT 60.070 38.462 0.00 0.00 0.00 2.24
4334 4472 6.110707 TCCGTTCCAAAATAGATGACCTAAC 58.889 40.000 0.00 0.00 0.00 2.34
4335 4473 6.302535 TCCGTTCCAAAATAGATGACCTAA 57.697 37.500 0.00 0.00 0.00 2.69
4336 4474 5.163343 CCTCCGTTCCAAAATAGATGACCTA 60.163 44.000 0.00 0.00 0.00 3.08
4337 4475 4.384208 CCTCCGTTCCAAAATAGATGACCT 60.384 45.833 0.00 0.00 0.00 3.85
4338 4476 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4339 4477 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4340 4478 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4341 4479 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4342 4480 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4343 4481 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4344 4482 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4345 4483 4.717778 TCATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
4346 4484 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
4347 4485 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
4348 4486 2.542550 TCATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
4349 4487 2.241281 TCATACTCCCTCCGTTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
4350 4488 2.091278 AGATCATACTCCCTCCGTTCCA 60.091 50.000 0.00 0.00 0.00 3.53
4351 4489 2.599677 AGATCATACTCCCTCCGTTCC 58.400 52.381 0.00 0.00 0.00 3.62
4352 4490 4.381079 GCATAGATCATACTCCCTCCGTTC 60.381 50.000 0.00 0.00 0.00 3.95
4353 4491 3.511934 GCATAGATCATACTCCCTCCGTT 59.488 47.826 0.00 0.00 0.00 4.44
4354 4492 3.093057 GCATAGATCATACTCCCTCCGT 58.907 50.000 0.00 0.00 0.00 4.69
4355 4493 3.130164 CAGCATAGATCATACTCCCTCCG 59.870 52.174 0.00 0.00 0.00 4.63
4356 4494 4.348486 TCAGCATAGATCATACTCCCTCC 58.652 47.826 0.00 0.00 0.00 4.30
4357 4495 5.991933 TTCAGCATAGATCATACTCCCTC 57.008 43.478 0.00 0.00 0.00 4.30
4358 4496 6.080682 TCTTTCAGCATAGATCATACTCCCT 58.919 40.000 0.00 0.00 0.00 4.20
4359 4497 6.352016 TCTTTCAGCATAGATCATACTCCC 57.648 41.667 0.00 0.00 0.00 4.30
4872 5013 0.244721 GCAGTTCCACCCATCTTTGC 59.755 55.000 0.00 0.00 0.00 3.68
4874 5015 5.653255 ATATAGCAGTTCCACCCATCTTT 57.347 39.130 0.00 0.00 0.00 2.52
5184 5356 8.127150 TCTGTGTCAAGAAGATCTATTTCAGA 57.873 34.615 0.00 0.67 37.79 3.27
5492 5664 0.982852 TGGGGATGATGACTCGCCTT 60.983 55.000 7.75 0.00 43.99 4.35
5633 5805 1.493022 ACTACTCACAACCAAGCCCAA 59.507 47.619 0.00 0.00 0.00 4.12
5638 5810 2.560504 TGCACACTACTCACAACCAAG 58.439 47.619 0.00 0.00 0.00 3.61
5790 5962 4.063998 TGCCTATACATGAACAGCTGAG 57.936 45.455 23.35 3.27 0.00 3.35
5937 6109 3.703001 AGACACGAACCTTGATCCATT 57.297 42.857 0.00 0.00 0.00 3.16
6020 6192 7.597743 TCTCTACAAAGACTTACATTTCGGAAC 59.402 37.037 0.00 0.00 0.00 3.62
6021 6193 7.663827 TCTCTACAAAGACTTACATTTCGGAA 58.336 34.615 0.00 0.00 0.00 4.30
6022 6194 7.223260 TCTCTACAAAGACTTACATTTCGGA 57.777 36.000 0.00 0.00 0.00 4.55
6023 6195 8.480643 AATCTCTACAAAGACTTACATTTCGG 57.519 34.615 0.00 0.00 0.00 4.30
6024 6196 8.596380 GGAATCTCTACAAAGACTTACATTTCG 58.404 37.037 0.00 0.00 0.00 3.46
6025 6197 9.436957 TGGAATCTCTACAAAGACTTACATTTC 57.563 33.333 0.00 0.00 0.00 2.17
6026 6198 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
6027 6199 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
6028 6200 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
6029 6201 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
6030 6202 8.958506 TCTAGTGGAATCTCTACAAAGACTTAC 58.041 37.037 0.00 0.00 29.47 2.34
6031 6203 9.702253 ATCTAGTGGAATCTCTACAAAGACTTA 57.298 33.333 0.00 0.00 29.78 2.24
6032 6204 8.474025 CATCTAGTGGAATCTCTACAAAGACTT 58.526 37.037 0.00 0.00 29.78 3.01
6033 6205 7.836685 TCATCTAGTGGAATCTCTACAAAGACT 59.163 37.037 0.00 0.00 29.78 3.24
6034 6206 8.001881 TCATCTAGTGGAATCTCTACAAAGAC 57.998 38.462 0.00 0.00 29.78 3.01
6035 6207 8.470805 GTTCATCTAGTGGAATCTCTACAAAGA 58.529 37.037 2.95 0.00 30.91 2.52
6036 6208 8.474025 AGTTCATCTAGTGGAATCTCTACAAAG 58.526 37.037 2.95 0.00 29.47 2.77
6037 6209 8.367660 AGTTCATCTAGTGGAATCTCTACAAA 57.632 34.615 2.95 0.00 29.47 2.83
6038 6210 7.962995 AGTTCATCTAGTGGAATCTCTACAA 57.037 36.000 2.95 0.00 29.47 2.41
6039 6211 8.053355 TGTAGTTCATCTAGTGGAATCTCTACA 58.947 37.037 15.56 15.56 32.68 2.74
6040 6212 8.453238 TGTAGTTCATCTAGTGGAATCTCTAC 57.547 38.462 12.78 12.78 0.00 2.59
6042 6214 9.073475 GTATGTAGTTCATCTAGTGGAATCTCT 57.927 37.037 2.95 0.05 37.91 3.10
6043 6215 8.018520 CGTATGTAGTTCATCTAGTGGAATCTC 58.981 40.741 2.95 0.00 37.91 2.75
6044 6216 7.040340 CCGTATGTAGTTCATCTAGTGGAATCT 60.040 40.741 2.95 5.08 37.91 2.40
6045 6217 7.040617 TCCGTATGTAGTTCATCTAGTGGAATC 60.041 40.741 2.95 0.00 37.91 2.52
6046 6218 6.776116 TCCGTATGTAGTTCATCTAGTGGAAT 59.224 38.462 2.95 0.00 37.91 3.01
6047 6219 6.124340 TCCGTATGTAGTTCATCTAGTGGAA 58.876 40.000 0.00 0.00 37.91 3.53
6048 6220 5.687780 TCCGTATGTAGTTCATCTAGTGGA 58.312 41.667 0.00 0.00 37.91 4.02
6049 6221 5.563085 GCTCCGTATGTAGTTCATCTAGTGG 60.563 48.000 0.00 0.00 37.91 4.00
6050 6222 5.008712 TGCTCCGTATGTAGTTCATCTAGTG 59.991 44.000 0.00 0.00 37.91 2.74
6051 6223 5.131067 TGCTCCGTATGTAGTTCATCTAGT 58.869 41.667 0.00 0.00 37.91 2.57
6052 6224 5.690997 TGCTCCGTATGTAGTTCATCTAG 57.309 43.478 0.00 0.00 37.91 2.43
6053 6225 6.459670 TTTGCTCCGTATGTAGTTCATCTA 57.540 37.500 0.00 0.00 37.91 1.98
6054 6226 5.339008 TTTGCTCCGTATGTAGTTCATCT 57.661 39.130 0.00 0.00 37.91 2.90
6055 6227 6.257849 TCATTTTGCTCCGTATGTAGTTCATC 59.742 38.462 0.00 0.00 37.91 2.92
6056 6228 6.112734 TCATTTTGCTCCGTATGTAGTTCAT 58.887 36.000 0.00 0.00 40.25 2.57
6057 6229 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
6058 6230 6.417191 TTCATTTTGCTCCGTATGTAGTTC 57.583 37.500 0.00 0.00 0.00 3.01
6059 6231 6.597672 TCATTCATTTTGCTCCGTATGTAGTT 59.402 34.615 0.00 0.00 0.00 2.24
6060 6232 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
6061 6233 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
6062 6234 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
6063 6235 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
6064 6236 6.974048 TGAATTCATTCATTTTGCTCCGTATG 59.026 34.615 3.38 0.00 41.51 2.39
6065 6237 7.099266 TGAATTCATTCATTTTGCTCCGTAT 57.901 32.000 3.38 0.00 41.51 3.06
6066 6238 6.507958 TGAATTCATTCATTTTGCTCCGTA 57.492 33.333 3.38 0.00 41.51 4.02
6067 6239 5.389859 TGAATTCATTCATTTTGCTCCGT 57.610 34.783 3.38 0.00 41.51 4.69
6091 6263 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
6095 6267 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
6098 6270 9.355916 ACTACATACGGATGTATATAGATGCAT 57.644 33.333 20.64 0.00 45.42 3.96
6099 6271 8.747538 ACTACATACGGATGTATATAGATGCA 57.252 34.615 20.64 0.00 45.42 3.96
6100 6272 9.666626 GAACTACATACGGATGTATATAGATGC 57.333 37.037 20.64 0.00 45.42 3.91
6107 6279 8.953313 CCACTATGAACTACATACGGATGTATA 58.047 37.037 20.64 10.04 45.42 1.47
6108 6280 7.668469 TCCACTATGAACTACATACGGATGTAT 59.332 37.037 20.64 7.28 45.42 2.29
6109 6281 6.999871 TCCACTATGAACTACATACGGATGTA 59.000 38.462 19.32 19.32 44.77 2.29
6111 6283 6.327279 TCCACTATGAACTACATACGGATG 57.673 41.667 5.94 5.94 40.07 3.51
6112 6284 6.971726 TTCCACTATGAACTACATACGGAT 57.028 37.500 0.00 0.00 37.58 4.18
6113 6285 6.776116 AGATTCCACTATGAACTACATACGGA 59.224 38.462 0.00 0.00 40.07 4.69
6114 6286 6.982852 AGATTCCACTATGAACTACATACGG 58.017 40.000 0.00 0.00 40.07 4.02
6115 6287 7.877003 AGAGATTCCACTATGAACTACATACG 58.123 38.462 0.00 0.00 40.07 3.06
6117 6289 9.862149 TGTAGAGATTCCACTATGAACTACATA 57.138 33.333 0.00 0.00 40.07 2.29
6118 6290 8.768501 TGTAGAGATTCCACTATGAACTACAT 57.231 34.615 0.00 0.00 42.39 2.29
6119 6291 8.589701 TTGTAGAGATTCCACTATGAACTACA 57.410 34.615 0.00 0.00 33.29 2.74
6120 6292 9.522804 CTTTGTAGAGATTCCACTATGAACTAC 57.477 37.037 0.00 0.00 0.00 2.73
6121 6293 9.475620 TCTTTGTAGAGATTCCACTATGAACTA 57.524 33.333 0.00 0.00 0.00 2.24
6122 6294 8.254508 GTCTTTGTAGAGATTCCACTATGAACT 58.745 37.037 0.00 0.00 0.00 3.01
6123 6295 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
6124 6296 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
6125 6297 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
6128 6300 9.256228 ACATAAGTCTTTGTAGAGATTCCACTA 57.744 33.333 0.00 0.00 0.00 2.74
6129 6301 8.140112 ACATAAGTCTTTGTAGAGATTCCACT 57.860 34.615 0.00 0.00 0.00 4.00
6130 6302 8.779354 AACATAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
6136 6308 9.924650 GTTCCTAAACATAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 35.36 3.10
6137 6309 8.861101 CGTTCCTAAACATAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 34.93 2.43
6138 6310 7.816031 CCGTTCCTAAACATAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 34.93 2.59
6139 6311 7.816031 TCCGTTCCTAAACATAAGTCTTTGTAG 59.184 37.037 0.00 0.00 34.93 2.74
6140 6312 7.669427 TCCGTTCCTAAACATAAGTCTTTGTA 58.331 34.615 0.00 0.00 34.93 2.41
6141 6313 6.527423 TCCGTTCCTAAACATAAGTCTTTGT 58.473 36.000 0.00 0.00 34.93 2.83
6142 6314 6.092259 CCTCCGTTCCTAAACATAAGTCTTTG 59.908 42.308 0.00 0.00 34.93 2.77
6143 6315 6.171213 CCTCCGTTCCTAAACATAAGTCTTT 58.829 40.000 0.00 0.00 34.93 2.52
6144 6316 5.338137 CCCTCCGTTCCTAAACATAAGTCTT 60.338 44.000 0.00 0.00 34.93 3.01
6145 6317 4.161754 CCCTCCGTTCCTAAACATAAGTCT 59.838 45.833 0.00 0.00 34.93 3.24
6146 6318 4.161001 TCCCTCCGTTCCTAAACATAAGTC 59.839 45.833 0.00 0.00 34.93 3.01
6147 6319 4.098894 TCCCTCCGTTCCTAAACATAAGT 58.901 43.478 0.00 0.00 34.93 2.24
6148 6320 4.161754 ACTCCCTCCGTTCCTAAACATAAG 59.838 45.833 0.00 0.00 34.93 1.73
6149 6321 4.098894 ACTCCCTCCGTTCCTAAACATAA 58.901 43.478 0.00 0.00 34.93 1.90
6150 6322 3.716431 ACTCCCTCCGTTCCTAAACATA 58.284 45.455 0.00 0.00 34.93 2.29
6151 6323 2.547990 ACTCCCTCCGTTCCTAAACAT 58.452 47.619 0.00 0.00 34.93 2.71
6152 6324 2.019807 ACTCCCTCCGTTCCTAAACA 57.980 50.000 0.00 0.00 34.93 2.83
6153 6325 3.359950 TCTACTCCCTCCGTTCCTAAAC 58.640 50.000 0.00 0.00 0.00 2.01
6154 6326 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
6155 6327 3.203710 TCATCTACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
6156 6328 2.781757 TCATCTACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
6157 6329 1.569548 TCATCTACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
6158 6330 2.068834 TCATCTACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
6159 6331 3.637229 TCAATCATCTACTCCCTCCGTTC 59.363 47.826 0.00 0.00 0.00 3.95
6160 6332 3.385111 GTCAATCATCTACTCCCTCCGTT 59.615 47.826 0.00 0.00 0.00 4.44
6161 6333 2.959707 GTCAATCATCTACTCCCTCCGT 59.040 50.000 0.00 0.00 0.00 4.69
6162 6334 3.226777 AGTCAATCATCTACTCCCTCCG 58.773 50.000 0.00 0.00 0.00 4.63
6163 6335 4.280677 CAGAGTCAATCATCTACTCCCTCC 59.719 50.000 0.00 0.00 40.42 4.30
6164 6336 4.261994 GCAGAGTCAATCATCTACTCCCTC 60.262 50.000 0.00 0.00 40.42 4.30
6165 6337 3.640967 GCAGAGTCAATCATCTACTCCCT 59.359 47.826 0.00 0.00 40.42 4.20
6166 6338 3.244044 GGCAGAGTCAATCATCTACTCCC 60.244 52.174 0.00 0.00 40.42 4.30
6167 6339 3.640967 AGGCAGAGTCAATCATCTACTCC 59.359 47.826 0.00 0.00 40.42 3.85
6168 6340 4.935352 AGGCAGAGTCAATCATCTACTC 57.065 45.455 0.00 0.00 39.95 2.59
6169 6341 4.469227 ACAAGGCAGAGTCAATCATCTACT 59.531 41.667 0.00 0.00 0.00 2.57
6170 6342 4.764172 ACAAGGCAGAGTCAATCATCTAC 58.236 43.478 0.00 0.00 0.00 2.59
6171 6343 6.070824 TGTTACAAGGCAGAGTCAATCATCTA 60.071 38.462 0.00 0.00 0.00 1.98
6172 6344 3.996921 ACAAGGCAGAGTCAATCATCT 57.003 42.857 0.00 0.00 0.00 2.90
6176 6348 3.686726 CCTGTTACAAGGCAGAGTCAATC 59.313 47.826 0.00 0.00 34.87 2.67
6291 6463 9.004717 TGAAATTATGGTTTCTTTGATACGACA 57.995 29.630 0.00 0.00 38.58 4.35
6316 6488 7.012421 GCCCTACCTCTTATTGACTTACAAATG 59.988 40.741 0.00 0.00 42.03 2.32
6338 6510 0.039035 TAAACCGCCTCAATTGCCCT 59.961 50.000 0.00 0.00 0.00 5.19
6537 6718 9.937577 GCAATAAGAAAATAATGTTTTCGTGAC 57.062 29.630 12.18 0.00 41.78 3.67
6551 6732 4.799564 TTTCCCTGCGCAATAAGAAAAT 57.200 36.364 13.05 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.