Multiple sequence alignment - TraesCS4D01G120400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G120400 chr4D 100.000 4412 0 0 1 4412 101443923 101439512 0.000000e+00 8148.0
1 TraesCS4D01G120400 chr4A 95.194 2996 122 8 369 3354 473939392 473942375 0.000000e+00 4715.0
2 TraesCS4D01G120400 chr4A 89.078 412 36 8 3388 3792 639056905 639057314 1.830000e-138 503.0
3 TraesCS4D01G120400 chr4A 85.172 290 32 5 1 289 473938695 473938974 2.010000e-73 287.0
4 TraesCS4D01G120400 chr4A 100.000 30 0 0 3356 3385 663290620 663290649 6.160000e-04 56.5
5 TraesCS4D01G120400 chr4B 93.617 2820 98 24 574 3389 145377446 145374705 0.000000e+00 4135.0
6 TraesCS4D01G120400 chr4B 85.746 456 39 12 3957 4412 145374609 145374180 4.020000e-125 459.0
7 TraesCS4D01G120400 chr4B 88.587 184 20 1 1 183 145377895 145377712 5.740000e-54 222.0
8 TraesCS4D01G120400 chr7B 95.876 388 16 0 2466 2853 452266115 452265728 2.900000e-176 628.0
9 TraesCS4D01G120400 chr7B 93.557 388 23 1 2466 2853 452300060 452299675 1.060000e-160 577.0
10 TraesCS4D01G120400 chr7B 89.474 399 30 8 3389 3781 202508367 202508759 1.100000e-135 494.0
11 TraesCS4D01G120400 chr7B 100.000 29 0 0 3357 3385 12201942 12201970 2.000000e-03 54.7
12 TraesCS4D01G120400 chr7D 98.847 347 4 0 2061 2407 519190713 519191059 1.740000e-173 619.0
13 TraesCS4D01G120400 chr7D 90.148 406 26 9 3389 3791 161390001 161390395 2.350000e-142 516.0
14 TraesCS4D01G120400 chr7D 97.561 41 1 0 3973 4013 552186333 552186373 2.200000e-08 71.3
15 TraesCS4D01G120400 chr7D 86.667 60 6 2 3954 4013 617505395 617505452 1.020000e-06 65.8
16 TraesCS4D01G120400 chr7D 100.000 30 0 0 3356 3385 27417334 27417305 6.160000e-04 56.5
17 TraesCS4D01G120400 chr7D 96.774 31 1 0 3356 3386 610670604 610670634 8.000000e-03 52.8
18 TraesCS4D01G120400 chr6D 89.663 416 33 9 3385 3791 428884758 428885172 5.060000e-144 521.0
19 TraesCS4D01G120400 chr6D 88.971 408 38 5 3389 3791 457095974 457095569 8.520000e-137 497.0
20 TraesCS4D01G120400 chr6D 85.938 64 7 2 149 211 319049742 319049804 2.850000e-07 67.6
21 TraesCS4D01G120400 chr7A 89.951 408 31 9 3389 3791 10021230 10020828 6.540000e-143 518.0
22 TraesCS4D01G120400 chr7A 94.286 35 2 0 3352 3386 670284958 670284924 2.000000e-03 54.7
23 TraesCS4D01G120400 chr5D 89.487 409 34 7 3389 3791 501436795 501436390 3.940000e-140 508.0
24 TraesCS4D01G120400 chr2A 88.998 409 37 7 3389 3791 710650238 710649832 2.370000e-137 499.0
25 TraesCS4D01G120400 chr2A 95.349 43 2 0 3971 4013 727308795 727308753 7.920000e-08 69.4
26 TraesCS4D01G120400 chr2A 95.349 43 2 0 3971 4013 727353914 727353872 7.920000e-08 69.4
27 TraesCS4D01G120400 chr6B 89.330 403 31 9 3400 3792 48550318 48550718 3.070000e-136 496.0
28 TraesCS4D01G120400 chrUn 93.220 295 19 1 1991 2285 1831895 1831602 2.440000e-117 433.0
29 TraesCS4D01G120400 chr2D 96.591 88 3 0 2108 2195 114664722 114664809 3.560000e-31 147.0
30 TraesCS4D01G120400 chr2D 95.349 43 2 0 3971 4013 593006885 593006843 7.920000e-08 69.4
31 TraesCS4D01G120400 chr3D 93.976 83 5 0 2111 2193 23254966 23255048 4.630000e-25 126.0
32 TraesCS4D01G120400 chr3B 92.941 85 6 0 2111 2195 744559406 744559322 1.670000e-24 124.0
33 TraesCS4D01G120400 chr3B 98.113 53 1 0 2111 2163 744559454 744559402 4.700000e-15 93.5
34 TraesCS4D01G120400 chr3B 96.429 56 2 0 2108 2163 744559553 744559498 4.700000e-15 93.5
35 TraesCS4D01G120400 chr2B 95.349 43 2 0 3971 4013 88421608 88421650 7.920000e-08 69.4
36 TraesCS4D01G120400 chr5A 93.478 46 2 1 3968 4013 371024458 371024502 2.850000e-07 67.6
37 TraesCS4D01G120400 chr3A 90.566 53 2 3 3963 4013 70655027 70655078 2.850000e-07 67.6
38 TraesCS4D01G120400 chr3A 86.667 60 8 0 4010 4069 419388633 419388692 2.850000e-07 67.6
39 TraesCS4D01G120400 chr6A 96.970 33 1 0 3353 3385 608623981 608624013 6.160000e-04 56.5
40 TraesCS4D01G120400 chr6A 100.000 28 0 0 3356 3383 121650373 121650346 8.000000e-03 52.8
41 TraesCS4D01G120400 chr1D 100.000 30 0 0 3356 3385 486454382 486454411 6.160000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G120400 chr4D 101439512 101443923 4411 True 8148.000000 8148 100.000000 1 4412 1 chr4D.!!$R1 4411
1 TraesCS4D01G120400 chr4A 473938695 473942375 3680 False 2501.000000 4715 90.183000 1 3354 2 chr4A.!!$F3 3353
2 TraesCS4D01G120400 chr4B 145374180 145377895 3715 True 1605.333333 4135 89.316667 1 4412 3 chr4B.!!$R1 4411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 937 0.178964 TGGAGTTTGGGAAGCTTGGG 60.179 55.000 2.10 0.00 0.00 4.12 F
1386 1770 0.179094 GGTCTGACGTGGACACAACA 60.179 55.000 16.64 1.52 35.61 3.33 F
1571 1955 1.538204 GCCAACTTCGAGATATCCGCA 60.538 52.381 0.00 0.00 0.00 5.69 F
2381 2765 0.250038 CGGACGAGTCCCTACCGATA 60.250 60.000 15.88 0.00 46.96 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2248 0.834612 AAAGACCCTGTGGAACGACA 59.165 50.000 0.0 0.0 42.39 4.35 R
2381 2765 1.375523 GACGCCCACGAACTTGGAT 60.376 57.895 0.0 0.0 43.93 3.41 R
3070 3454 1.594293 ACGCACAGTACACACCAGC 60.594 57.895 0.0 0.0 0.00 4.85 R
3768 4160 0.107831 CGGGAGTGTTTGGTTCCTGA 59.892 55.000 0.0 0.0 39.29 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 3.168528 AACCACCGAGCCACCACT 61.169 61.111 0.00 0.00 0.00 4.00
152 195 3.885521 CTACCCTCGGTCGGCGAC 61.886 72.222 30.72 30.72 37.09 5.19
176 219 4.021925 GAGCCAACCTCGCCACCT 62.022 66.667 0.00 0.00 0.00 4.00
178 221 4.329545 GCCAACCTCGCCACCTCA 62.330 66.667 0.00 0.00 0.00 3.86
186 229 4.410400 CGCCACCTCACCCTTCCC 62.410 72.222 0.00 0.00 0.00 3.97
191 234 2.160853 ACCTCACCCTTCCCCCAAC 61.161 63.158 0.00 0.00 0.00 3.77
230 274 3.492353 CGCCCCCACCATCCATCT 61.492 66.667 0.00 0.00 0.00 2.90
241 285 2.022035 ACCATCCATCTCTCTAACCCCA 60.022 50.000 0.00 0.00 0.00 4.96
268 312 3.383185 TGAAACATTTTCTCCGGCAAACT 59.617 39.130 0.00 0.00 0.00 2.66
289 333 1.378762 CACCACCCTAACACCCCTG 59.621 63.158 0.00 0.00 0.00 4.45
292 336 0.546747 CCACCCTAACACCCCTGAGA 60.547 60.000 0.00 0.00 0.00 3.27
294 338 2.628559 CCACCCTAACACCCCTGAGATA 60.629 54.545 0.00 0.00 0.00 1.98
295 339 2.700897 CACCCTAACACCCCTGAGATAG 59.299 54.545 0.00 0.00 0.00 2.08
296 340 2.590611 ACCCTAACACCCCTGAGATAGA 59.409 50.000 0.00 0.00 0.00 1.98
297 341 3.210074 ACCCTAACACCCCTGAGATAGAT 59.790 47.826 0.00 0.00 0.00 1.98
298 342 4.422592 ACCCTAACACCCCTGAGATAGATA 59.577 45.833 0.00 0.00 0.00 1.98
299 343 5.102783 ACCCTAACACCCCTGAGATAGATAA 60.103 44.000 0.00 0.00 0.00 1.75
301 345 6.070538 CCCTAACACCCCTGAGATAGATAATG 60.071 46.154 0.00 0.00 0.00 1.90
302 346 5.832539 AACACCCCTGAGATAGATAATGG 57.167 43.478 0.00 0.00 0.00 3.16
303 347 4.171234 ACACCCCTGAGATAGATAATGGG 58.829 47.826 0.00 0.00 37.80 4.00
305 349 3.118531 CCCCTGAGATAGATAATGGGGG 58.881 54.545 6.30 0.00 46.71 5.40
306 350 3.506787 CCCCTGAGATAGATAATGGGGGT 60.507 52.174 6.30 0.00 46.71 4.95
307 351 3.521126 CCCTGAGATAGATAATGGGGGTG 59.479 52.174 0.00 0.00 0.00 4.61
308 352 4.171234 CCTGAGATAGATAATGGGGGTGT 58.829 47.826 0.00 0.00 0.00 4.16
309 353 4.599241 CCTGAGATAGATAATGGGGGTGTT 59.401 45.833 0.00 0.00 0.00 3.32
310 354 5.073691 CCTGAGATAGATAATGGGGGTGTTT 59.926 44.000 0.00 0.00 0.00 2.83
311 355 5.940617 TGAGATAGATAATGGGGGTGTTTG 58.059 41.667 0.00 0.00 0.00 2.93
312 356 4.729868 AGATAGATAATGGGGGTGTTTGC 58.270 43.478 0.00 0.00 0.00 3.68
313 357 2.159179 AGATAATGGGGGTGTTTGCC 57.841 50.000 0.00 0.00 0.00 4.52
314 358 1.360852 AGATAATGGGGGTGTTTGCCA 59.639 47.619 0.00 0.00 0.00 4.92
315 359 1.480545 GATAATGGGGGTGTTTGCCAC 59.519 52.381 0.00 0.00 43.74 5.01
331 375 7.502561 GTGTTTGCCACCCTAAAGATAGATAAT 59.497 37.037 0.00 0.00 38.18 1.28
333 377 6.126863 TGCCACCCTAAAGATAGATAATGG 57.873 41.667 0.00 0.00 0.00 3.16
335 379 5.250774 GCCACCCTAAAGATAGATAATGGGA 59.749 44.000 0.00 0.00 37.25 4.37
360 404 4.129737 TCCGGCGAGCTTCTTCCG 62.130 66.667 9.30 9.11 41.41 4.30
361 405 4.129737 CCGGCGAGCTTCTTCCGA 62.130 66.667 9.30 0.00 44.23 4.55
362 406 2.105128 CGGCGAGCTTCTTCCGAT 59.895 61.111 0.00 0.00 44.23 4.18
364 408 1.756375 CGGCGAGCTTCTTCCGATTG 61.756 60.000 0.00 0.00 44.23 2.67
481 864 1.671379 GTGAGAAGCCACCCCGAAC 60.671 63.158 0.00 0.00 0.00 3.95
488 871 4.760047 CCACCCCGAACGCCTGAG 62.760 72.222 0.00 0.00 0.00 3.35
493 876 2.636412 CCCGAACGCCTGAGACTCA 61.636 63.158 4.78 4.78 0.00 3.41
514 897 5.767269 TCATGAAGCTAGATTCTAGAAGCG 58.233 41.667 22.23 3.38 39.94 4.68
516 899 6.208402 TCATGAAGCTAGATTCTAGAAGCGAT 59.792 38.462 22.23 5.35 39.94 4.58
534 917 3.242349 GCGATGTTGAGAAGCTGAATCTG 60.242 47.826 0.00 0.00 0.00 2.90
537 920 3.405831 TGTTGAGAAGCTGAATCTGTGG 58.594 45.455 0.00 0.00 0.00 4.17
554 937 0.178964 TGGAGTTTGGGAAGCTTGGG 60.179 55.000 2.10 0.00 0.00 4.12
561 944 1.368268 TGGGAAGCTTGGGGGACTTT 61.368 55.000 2.10 0.00 0.00 2.66
569 952 2.488347 GCTTGGGGGACTTTAGAACACA 60.488 50.000 0.00 0.00 0.00 3.72
571 954 1.422402 TGGGGGACTTTAGAACACACC 59.578 52.381 0.00 0.00 0.00 4.16
578 961 6.002082 GGGACTTTAGAACACACCTTTACAT 58.998 40.000 0.00 0.00 0.00 2.29
706 1089 2.879826 GCATAGGTTGCCATCAAACAC 58.120 47.619 0.00 0.00 46.15 3.32
770 1154 1.003355 CCACGGAACAGAGCCACAT 60.003 57.895 0.00 0.00 0.00 3.21
772 1156 0.320683 CACGGAACAGAGCCACATCA 60.321 55.000 0.00 0.00 0.00 3.07
800 1184 1.448365 CACTAGTGGCATGCTCGCA 60.448 57.895 18.92 4.09 0.00 5.10
801 1185 0.812811 CACTAGTGGCATGCTCGCAT 60.813 55.000 18.92 0.00 37.08 4.73
984 1368 5.123936 TCTCTATATATCCCGTGGTGATCG 58.876 45.833 0.00 0.00 0.00 3.69
1034 1418 3.036084 CACGAACGCACGCCTTCT 61.036 61.111 0.00 0.00 36.70 2.85
1051 1435 3.242936 CCTTCTTCTAGCTCTAGACACGC 60.243 52.174 6.14 0.00 41.48 5.34
1052 1436 1.934525 TCTTCTAGCTCTAGACACGCG 59.065 52.381 3.53 3.53 41.48 6.01
1055 1439 3.450559 TAGCTCTAGACACGCGCGC 62.451 63.158 32.58 23.91 0.00 6.86
1059 1443 4.476410 CTAGACACGCGCGCCTCA 62.476 66.667 32.58 10.74 0.00 3.86
1150 1534 2.221169 GACCATGTCTTTGCACAGTGA 58.779 47.619 4.15 0.00 0.00 3.41
1201 1585 2.807967 TGCTCATGTCTCGTTTCTTTGG 59.192 45.455 0.00 0.00 0.00 3.28
1217 1601 0.400213 TTGGATTGGTTCGAGCAGGT 59.600 50.000 0.53 0.00 0.00 4.00
1304 1688 1.893801 AGGTTAGTCGTCTTCCACCTG 59.106 52.381 6.96 0.00 33.22 4.00
1321 1705 2.069465 CTGCCGGTCGATCTCTCCAG 62.069 65.000 1.90 0.00 0.00 3.86
1328 1712 0.533978 TCGATCTCTCCAGCTCCTCG 60.534 60.000 0.00 0.00 0.00 4.63
1331 1715 0.817634 ATCTCTCCAGCTCCTCGTCG 60.818 60.000 0.00 0.00 0.00 5.12
1379 1763 1.204704 GTGATCATGGTCTGACGTGGA 59.795 52.381 7.64 0.00 36.48 4.02
1386 1770 0.179094 GGTCTGACGTGGACACAACA 60.179 55.000 16.64 1.52 35.61 3.33
1571 1955 1.538204 GCCAACTTCGAGATATCCGCA 60.538 52.381 0.00 0.00 0.00 5.69
1580 1964 2.202878 ATATCCGCACGCAACGCT 60.203 55.556 0.00 0.00 0.00 5.07
1864 2248 4.127040 CGCAGCTCTCTCGCCAGT 62.127 66.667 0.00 0.00 0.00 4.00
1955 2339 3.518003 GCCTACGCGGAACTCCTA 58.482 61.111 12.47 0.00 33.16 2.94
2381 2765 0.250038 CGGACGAGTCCCTACCGATA 60.250 60.000 15.88 0.00 46.96 2.92
2621 3005 1.202200 GCACTCTACTACGACCAGCTG 60.202 57.143 6.78 6.78 0.00 4.24
2942 3326 2.485582 ACGTCGAGCATCCGTGAG 59.514 61.111 0.00 0.00 31.94 3.51
3070 3454 5.164148 CGGTCTCATTTCATTCGTATGATCG 60.164 44.000 5.50 0.00 40.37 3.69
3118 3502 3.722147 AGATCATGATCGTGGTTGCTAC 58.278 45.455 26.09 2.66 42.48 3.58
3154 3540 5.257082 TCCCTTTTTCAGTTAGTTTGTGC 57.743 39.130 0.00 0.00 0.00 4.57
3175 3561 7.667557 TGTGCCATCTATTGTACTACTAATCC 58.332 38.462 0.00 0.00 0.00 3.01
3178 3564 7.097834 GCCATCTATTGTACTACTAATCCACC 58.902 42.308 0.00 0.00 0.00 4.61
3325 3717 8.567285 AAGGTAAAATGGTTCAGATCTTGTAG 57.433 34.615 0.00 0.00 0.00 2.74
3349 3741 3.326588 TGAAAGGGGAAGATTCAGTTCGA 59.673 43.478 0.00 0.00 0.00 3.71
3355 3747 3.181506 GGGAAGATTCAGTTCGATTGTGC 60.182 47.826 0.00 0.00 0.00 4.57
3361 3753 3.126001 TCAGTTCGATTGTGCTTCCTT 57.874 42.857 0.00 0.00 0.00 3.36
3362 3754 3.476552 TCAGTTCGATTGTGCTTCCTTT 58.523 40.909 0.00 0.00 0.00 3.11
3364 3756 3.003689 CAGTTCGATTGTGCTTCCTTTGT 59.996 43.478 0.00 0.00 0.00 2.83
3383 3775 9.444600 TCCTTTGTAAAGAAATATAAGAGCGTT 57.555 29.630 5.95 0.00 38.28 4.84
3389 3781 6.927294 AAGAAATATAAGAGCGTTTGGAGG 57.073 37.500 0.00 0.00 0.00 4.30
3391 3783 5.130477 AGAAATATAAGAGCGTTTGGAGGGA 59.870 40.000 0.00 0.00 0.00 4.20
3392 3784 5.367945 AATATAAGAGCGTTTGGAGGGAA 57.632 39.130 0.00 0.00 0.00 3.97
3393 3785 3.713826 ATAAGAGCGTTTGGAGGGAAA 57.286 42.857 0.00 0.00 0.00 3.13
3394 3786 2.586648 AAGAGCGTTTGGAGGGAAAT 57.413 45.000 0.00 0.00 0.00 2.17
3395 3787 3.713826 AAGAGCGTTTGGAGGGAAATA 57.286 42.857 0.00 0.00 0.00 1.40
3396 3788 2.987232 AGAGCGTTTGGAGGGAAATAC 58.013 47.619 0.00 0.00 0.00 1.89
3397 3789 2.304761 AGAGCGTTTGGAGGGAAATACA 59.695 45.455 0.00 0.00 0.00 2.29
3398 3790 2.418976 GAGCGTTTGGAGGGAAATACAC 59.581 50.000 0.00 0.00 0.00 2.90
3399 3791 2.039879 AGCGTTTGGAGGGAAATACACT 59.960 45.455 0.00 0.00 33.40 3.55
3400 3792 2.817844 GCGTTTGGAGGGAAATACACTT 59.182 45.455 0.00 0.00 29.26 3.16
3401 3793 3.254903 GCGTTTGGAGGGAAATACACTTT 59.745 43.478 0.00 0.00 29.26 2.66
3402 3794 4.794169 CGTTTGGAGGGAAATACACTTTG 58.206 43.478 0.00 0.00 29.26 2.77
3403 3795 4.320935 CGTTTGGAGGGAAATACACTTTGG 60.321 45.833 0.00 0.00 29.26 3.28
3404 3796 4.463050 TTGGAGGGAAATACACTTTGGT 57.537 40.909 0.00 0.00 29.26 3.67
3405 3797 4.463050 TGGAGGGAAATACACTTTGGTT 57.537 40.909 0.00 0.00 29.26 3.67
3406 3798 4.403734 TGGAGGGAAATACACTTTGGTTC 58.596 43.478 0.00 0.00 29.26 3.62
3407 3799 3.762288 GGAGGGAAATACACTTTGGTTCC 59.238 47.826 0.00 0.00 29.26 3.62
3408 3800 4.508584 GGAGGGAAATACACTTTGGTTCCT 60.509 45.833 0.00 0.00 29.26 3.36
3409 3801 4.407365 AGGGAAATACACTTTGGTTCCTG 58.593 43.478 0.00 0.00 0.00 3.86
3410 3802 3.509967 GGGAAATACACTTTGGTTCCTGG 59.490 47.826 0.00 0.00 0.00 4.45
3411 3803 4.149598 GGAAATACACTTTGGTTCCTGGT 58.850 43.478 0.00 0.00 0.00 4.00
3412 3804 4.587262 GGAAATACACTTTGGTTCCTGGTT 59.413 41.667 0.00 0.00 0.00 3.67
3413 3805 5.508994 GGAAATACACTTTGGTTCCTGGTTG 60.509 44.000 0.00 0.00 0.00 3.77
3414 3806 2.525105 ACACTTTGGTTCCTGGTTGT 57.475 45.000 0.00 0.00 0.00 3.32
3415 3807 3.655615 ACACTTTGGTTCCTGGTTGTA 57.344 42.857 0.00 0.00 0.00 2.41
3416 3808 4.178956 ACACTTTGGTTCCTGGTTGTAT 57.821 40.909 0.00 0.00 0.00 2.29
3417 3809 5.313280 ACACTTTGGTTCCTGGTTGTATA 57.687 39.130 0.00 0.00 0.00 1.47
3418 3810 5.887754 ACACTTTGGTTCCTGGTTGTATAT 58.112 37.500 0.00 0.00 0.00 0.86
3419 3811 7.023171 ACACTTTGGTTCCTGGTTGTATATA 57.977 36.000 0.00 0.00 0.00 0.86
3420 3812 6.882678 ACACTTTGGTTCCTGGTTGTATATAC 59.117 38.462 5.89 5.89 0.00 1.47
3421 3813 6.882140 CACTTTGGTTCCTGGTTGTATATACA 59.118 38.462 11.62 11.62 0.00 2.29
3422 3814 6.882678 ACTTTGGTTCCTGGTTGTATATACAC 59.117 38.462 15.20 10.24 35.64 2.90
3423 3815 5.362105 TGGTTCCTGGTTGTATATACACC 57.638 43.478 15.20 17.88 35.64 4.16
3424 3816 4.164604 TGGTTCCTGGTTGTATATACACCC 59.835 45.833 19.76 19.76 39.02 4.61
3425 3817 4.411212 GGTTCCTGGTTGTATATACACCCT 59.589 45.833 24.87 0.00 39.28 4.34
3426 3818 5.603813 GGTTCCTGGTTGTATATACACCCTA 59.396 44.000 24.87 13.50 39.28 3.53
3427 3819 6.271624 GGTTCCTGGTTGTATATACACCCTAT 59.728 42.308 24.87 0.00 39.28 2.57
3428 3820 7.455638 GGTTCCTGGTTGTATATACACCCTATA 59.544 40.741 24.87 11.03 39.28 1.31
3429 3821 9.043548 GTTCCTGGTTGTATATACACCCTATAT 57.956 37.037 24.87 0.00 39.28 0.86
3430 3822 8.603898 TCCTGGTTGTATATACACCCTATATG 57.396 38.462 24.87 12.05 39.28 1.78
3431 3823 8.403474 TCCTGGTTGTATATACACCCTATATGA 58.597 37.037 24.87 13.66 39.28 2.15
3432 3824 8.696374 CCTGGTTGTATATACACCCTATATGAG 58.304 40.741 24.87 14.95 39.28 2.90
3433 3825 9.475620 CTGGTTGTATATACACCCTATATGAGA 57.524 37.037 24.87 6.40 39.28 3.27
3506 3898 8.722342 TTAGATTAAACTCGACATTGTTTTGC 57.278 30.769 5.92 0.00 37.53 3.68
3507 3899 6.734137 AGATTAAACTCGACATTGTTTTGCA 58.266 32.000 5.92 0.00 37.53 4.08
3508 3900 6.636850 AGATTAAACTCGACATTGTTTTGCAC 59.363 34.615 5.92 0.00 37.53 4.57
3509 3901 4.370364 AAACTCGACATTGTTTTGCACT 57.630 36.364 0.00 0.00 33.21 4.40
3510 3902 5.493133 AAACTCGACATTGTTTTGCACTA 57.507 34.783 0.00 0.00 33.21 2.74
3511 3903 4.732285 ACTCGACATTGTTTTGCACTAG 57.268 40.909 0.00 0.00 0.00 2.57
3512 3904 4.127171 ACTCGACATTGTTTTGCACTAGT 58.873 39.130 0.00 0.00 0.00 2.57
3513 3905 5.294356 ACTCGACATTGTTTTGCACTAGTA 58.706 37.500 0.00 0.00 0.00 1.82
3514 3906 5.932303 ACTCGACATTGTTTTGCACTAGTAT 59.068 36.000 0.00 0.00 0.00 2.12
3515 3907 7.094631 ACTCGACATTGTTTTGCACTAGTATA 58.905 34.615 0.00 0.00 0.00 1.47
3516 3908 7.764443 ACTCGACATTGTTTTGCACTAGTATAT 59.236 33.333 0.00 0.00 0.00 0.86
3517 3909 9.244799 CTCGACATTGTTTTGCACTAGTATATA 57.755 33.333 0.00 0.00 0.00 0.86
3518 3910 9.589111 TCGACATTGTTTTGCACTAGTATATAA 57.411 29.630 0.00 0.00 0.00 0.98
3554 3946 8.715191 AAAAATAACATTGACTTCAGTGCAAA 57.285 26.923 1.87 0.00 37.12 3.68
3555 3947 8.715191 AAAATAACATTGACTTCAGTGCAAAA 57.285 26.923 1.87 0.00 37.12 2.44
3556 3948 8.715191 AAATAACATTGACTTCAGTGCAAAAA 57.285 26.923 1.87 0.00 37.12 1.94
3595 3987 9.542462 TTTGCTATTATAGGTCACTATTCACAC 57.458 33.333 1.12 0.00 40.35 3.82
3596 3988 8.478775 TGCTATTATAGGTCACTATTCACACT 57.521 34.615 1.12 0.00 40.35 3.55
3597 3989 9.582648 TGCTATTATAGGTCACTATTCACACTA 57.417 33.333 1.12 0.00 40.35 2.74
3604 3996 7.907214 AGGTCACTATTCACACTATTTTGAC 57.093 36.000 0.00 0.00 0.00 3.18
3605 3997 7.073342 GGTCACTATTCACACTATTTTGACC 57.927 40.000 0.00 0.00 42.64 4.02
3606 3998 6.653320 GGTCACTATTCACACTATTTTGACCA 59.347 38.462 11.20 0.00 46.48 4.02
3607 3999 7.174253 GGTCACTATTCACACTATTTTGACCAA 59.826 37.037 11.20 0.00 46.48 3.67
3608 4000 8.564574 GTCACTATTCACACTATTTTGACCAAA 58.435 33.333 0.00 0.00 0.00 3.28
3609 4001 9.126151 TCACTATTCACACTATTTTGACCAAAA 57.874 29.630 9.94 9.94 43.48 2.44
3614 4006 9.612066 ATTCACACTATTTTGACCAAAATTTGT 57.388 25.926 21.25 19.96 45.67 2.83
3615 4007 8.641499 TCACACTATTTTGACCAAAATTTGTC 57.359 30.769 21.25 0.00 45.67 3.18
3616 4008 8.474025 TCACACTATTTTGACCAAAATTTGTCT 58.526 29.630 21.25 9.55 45.67 3.41
3617 4009 9.097257 CACACTATTTTGACCAAAATTTGTCTT 57.903 29.630 21.25 10.24 45.67 3.01
3618 4010 9.665719 ACACTATTTTGACCAAAATTTGTCTTT 57.334 25.926 21.25 3.38 45.67 2.52
3624 4016 9.670719 TTTTGACCAAAATTTGTCTTTTTGAAC 57.329 25.926 4.92 5.05 43.50 3.18
3625 4017 7.969536 TGACCAAAATTTGTCTTTTTGAACA 57.030 28.000 4.92 7.00 43.50 3.18
3626 4018 8.027440 TGACCAAAATTTGTCTTTTTGAACAG 57.973 30.769 4.92 0.00 43.50 3.16
3627 4019 7.875041 TGACCAAAATTTGTCTTTTTGAACAGA 59.125 29.630 4.92 0.00 43.50 3.41
3628 4020 8.614469 ACCAAAATTTGTCTTTTTGAACAGAA 57.386 26.923 4.92 0.00 43.50 3.02
3629 4021 8.720562 ACCAAAATTTGTCTTTTTGAACAGAAG 58.279 29.630 4.92 0.00 43.50 2.85
3630 4022 8.720562 CCAAAATTTGTCTTTTTGAACAGAAGT 58.279 29.630 4.92 0.00 43.50 3.01
3631 4023 9.745323 CAAAATTTGTCTTTTTGAACAGAAGTC 57.255 29.630 0.00 0.00 43.50 3.01
3632 4024 9.487790 AAAATTTGTCTTTTTGAACAGAAGTCA 57.512 25.926 0.00 0.00 0.00 3.41
3633 4025 9.487790 AAATTTGTCTTTTTGAACAGAAGTCAA 57.512 25.926 0.00 0.00 30.53 3.18
3634 4026 9.487790 AATTTGTCTTTTTGAACAGAAGTCAAA 57.512 25.926 17.28 17.28 40.18 2.69
3635 4027 8.519492 TTTGTCTTTTTGAACAGAAGTCAAAG 57.481 30.769 14.24 0.00 35.28 2.77
3636 4028 6.620678 TGTCTTTTTGAACAGAAGTCAAAGG 58.379 36.000 0.47 0.00 35.23 3.11
3637 4029 6.036470 GTCTTTTTGAACAGAAGTCAAAGGG 58.964 40.000 0.47 0.00 35.23 3.95
3638 4030 5.714806 TCTTTTTGAACAGAAGTCAAAGGGT 59.285 36.000 0.47 0.00 35.23 4.34
3639 4031 5.993748 TTTTGAACAGAAGTCAAAGGGTT 57.006 34.783 0.47 0.00 35.23 4.11
3640 4032 7.394923 TCTTTTTGAACAGAAGTCAAAGGGTTA 59.605 33.333 0.47 0.00 35.23 2.85
3641 4033 7.654022 TTTTGAACAGAAGTCAAAGGGTTAT 57.346 32.000 0.47 0.00 35.23 1.89
3642 4034 7.654022 TTTGAACAGAAGTCAAAGGGTTATT 57.346 32.000 0.00 0.00 0.00 1.40
3643 4035 7.654022 TTGAACAGAAGTCAAAGGGTTATTT 57.346 32.000 0.00 0.00 0.00 1.40
3644 4036 7.654022 TGAACAGAAGTCAAAGGGTTATTTT 57.346 32.000 0.00 0.00 0.00 1.82
3645 4037 8.754991 TGAACAGAAGTCAAAGGGTTATTTTA 57.245 30.769 0.00 0.00 0.00 1.52
3646 4038 9.362151 TGAACAGAAGTCAAAGGGTTATTTTAT 57.638 29.630 0.00 0.00 0.00 1.40
3684 4076 9.582431 TTTTCTCACAAGTATAATAGAAGGTCG 57.418 33.333 0.00 0.00 0.00 4.79
3685 4077 8.515695 TTCTCACAAGTATAATAGAAGGTCGA 57.484 34.615 0.00 0.00 0.00 4.20
3686 4078 8.155821 TCTCACAAGTATAATAGAAGGTCGAG 57.844 38.462 0.00 0.00 0.00 4.04
3687 4079 7.774157 TCTCACAAGTATAATAGAAGGTCGAGT 59.226 37.037 0.00 0.00 0.00 4.18
3688 4080 8.289939 TCACAAGTATAATAGAAGGTCGAGTT 57.710 34.615 0.00 0.00 0.00 3.01
3689 4081 8.746530 TCACAAGTATAATAGAAGGTCGAGTTT 58.253 33.333 0.00 0.00 0.00 2.66
3706 4098 9.952341 GGTCGAGTTTATTTCAAAAATATTTGC 57.048 29.630 0.39 0.00 44.52 3.68
3749 4141 9.784531 TTGTTGAATTGCTAATTTATTTTCCCA 57.215 25.926 0.00 0.00 0.00 4.37
3750 4142 9.956640 TGTTGAATTGCTAATTTATTTTCCCAT 57.043 25.926 0.00 0.00 0.00 4.00
3781 4173 7.247456 TGTATATACACTCAGGAACCAAACA 57.753 36.000 11.62 0.00 0.00 2.83
3782 4174 7.101054 TGTATATACACTCAGGAACCAAACAC 58.899 38.462 11.62 0.00 0.00 3.32
3783 4175 4.706842 ATACACTCAGGAACCAAACACT 57.293 40.909 0.00 0.00 0.00 3.55
3784 4176 2.919228 ACACTCAGGAACCAAACACTC 58.081 47.619 0.00 0.00 0.00 3.51
3785 4177 2.222027 CACTCAGGAACCAAACACTCC 58.778 52.381 0.00 0.00 0.00 3.85
3786 4178 1.143073 ACTCAGGAACCAAACACTCCC 59.857 52.381 0.00 0.00 0.00 4.30
3787 4179 0.107831 TCAGGAACCAAACACTCCCG 59.892 55.000 0.00 0.00 0.00 5.14
3788 4180 0.179029 CAGGAACCAAACACTCCCGT 60.179 55.000 0.00 0.00 0.00 5.28
3789 4181 0.108019 AGGAACCAAACACTCCCGTC 59.892 55.000 0.00 0.00 0.00 4.79
3790 4182 0.887836 GGAACCAAACACTCCCGTCC 60.888 60.000 0.00 0.00 0.00 4.79
3791 4183 0.179040 GAACCAAACACTCCCGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
3792 4184 0.179029 AACCAAACACTCCCGTCCAG 60.179 55.000 0.00 0.00 0.00 3.86
3793 4185 1.966451 CCAAACACTCCCGTCCAGC 60.966 63.158 0.00 0.00 0.00 4.85
3794 4186 2.030562 AAACACTCCCGTCCAGCG 59.969 61.111 0.00 0.00 40.95 5.18
3795 4187 2.803817 AAACACTCCCGTCCAGCGT 61.804 57.895 0.00 0.00 39.32 5.07
3796 4188 2.319890 AAACACTCCCGTCCAGCGTT 62.320 55.000 0.00 0.00 39.32 4.84
3797 4189 2.030562 CACTCCCGTCCAGCGTTT 59.969 61.111 0.00 0.00 39.32 3.60
3798 4190 2.030562 ACTCCCGTCCAGCGTTTG 59.969 61.111 0.00 0.00 39.32 2.93
3814 4206 7.166628 CAGCGTTTGGATCACTACTTTATAG 57.833 40.000 0.00 0.00 0.00 1.31
3815 4207 6.978659 CAGCGTTTGGATCACTACTTTATAGA 59.021 38.462 0.00 0.00 0.00 1.98
3816 4208 7.168302 CAGCGTTTGGATCACTACTTTATAGAG 59.832 40.741 0.00 0.00 0.00 2.43
3817 4209 6.421202 GCGTTTGGATCACTACTTTATAGAGG 59.579 42.308 0.00 0.00 0.00 3.69
3818 4210 7.683704 GCGTTTGGATCACTACTTTATAGAGGA 60.684 40.741 0.00 0.00 0.00 3.71
3819 4211 8.195436 CGTTTGGATCACTACTTTATAGAGGAA 58.805 37.037 0.00 0.00 0.00 3.36
3827 4219 7.281774 TCACTACTTTATAGAGGAAGTACGTGG 59.718 40.741 0.00 3.99 37.64 4.94
3831 4223 8.353423 ACTTTATAGAGGAAGTACGTGGTAAA 57.647 34.615 0.00 0.00 34.52 2.01
3836 4228 8.713737 ATAGAGGAAGTACGTGGTAAATTTTC 57.286 34.615 0.00 0.00 0.00 2.29
3884 4292 3.501445 GCTAAGAGTCATTGATGGCCATC 59.499 47.826 34.71 34.71 38.29 3.51
3885 4293 3.947612 AAGAGTCATTGATGGCCATCT 57.052 42.857 38.59 22.57 38.60 2.90
3886 4294 3.488778 AGAGTCATTGATGGCCATCTC 57.511 47.619 38.59 28.11 38.60 2.75
3887 4295 3.047115 AGAGTCATTGATGGCCATCTCT 58.953 45.455 38.59 29.59 38.60 3.10
3888 4296 3.458857 AGAGTCATTGATGGCCATCTCTT 59.541 43.478 38.59 23.73 38.60 2.85
3889 4297 4.657504 AGAGTCATTGATGGCCATCTCTTA 59.342 41.667 38.59 24.23 38.60 2.10
3890 4298 4.970711 AGTCATTGATGGCCATCTCTTAG 58.029 43.478 38.59 25.30 38.60 2.18
3891 4299 4.657504 AGTCATTGATGGCCATCTCTTAGA 59.342 41.667 38.59 26.77 38.60 2.10
3892 4300 4.754114 GTCATTGATGGCCATCTCTTAGAC 59.246 45.833 38.59 31.21 38.60 2.59
3893 4301 3.845781 TTGATGGCCATCTCTTAGACC 57.154 47.619 38.59 16.42 38.60 3.85
3894 4302 2.763039 TGATGGCCATCTCTTAGACCA 58.237 47.619 38.59 18.73 38.60 4.02
3895 4303 3.114606 TGATGGCCATCTCTTAGACCAA 58.885 45.455 38.59 17.47 38.60 3.67
3896 4304 3.718434 TGATGGCCATCTCTTAGACCAAT 59.282 43.478 38.59 6.34 38.60 3.16
3897 4305 4.907269 TGATGGCCATCTCTTAGACCAATA 59.093 41.667 38.59 16.79 38.60 1.90
3898 4306 5.369404 TGATGGCCATCTCTTAGACCAATAA 59.631 40.000 38.59 16.37 38.60 1.40
3899 4307 5.708736 TGGCCATCTCTTAGACCAATAAA 57.291 39.130 0.00 0.00 0.00 1.40
3900 4308 5.684704 TGGCCATCTCTTAGACCAATAAAG 58.315 41.667 0.00 0.00 0.00 1.85
3901 4309 5.191722 TGGCCATCTCTTAGACCAATAAAGT 59.808 40.000 0.00 0.00 0.00 2.66
3902 4310 5.529060 GGCCATCTCTTAGACCAATAAAGTG 59.471 44.000 0.00 0.00 0.00 3.16
3903 4311 6.349300 GCCATCTCTTAGACCAATAAAGTGA 58.651 40.000 0.00 0.00 0.00 3.41
3904 4312 6.823689 GCCATCTCTTAGACCAATAAAGTGAA 59.176 38.462 0.00 0.00 0.00 3.18
3905 4313 7.011857 GCCATCTCTTAGACCAATAAAGTGAAG 59.988 40.741 0.00 0.00 0.00 3.02
3906 4314 8.043710 CCATCTCTTAGACCAATAAAGTGAAGT 58.956 37.037 0.00 0.00 0.00 3.01
3907 4315 9.442047 CATCTCTTAGACCAATAAAGTGAAGTT 57.558 33.333 0.00 0.00 0.00 2.66
3926 4334 8.592155 GTGAAGTTAAAAGTTCATTGTGGTTTC 58.408 33.333 14.32 0.00 46.56 2.78
3941 4349 8.491152 CATTGTGGTTTCAAGAGATCGATATAC 58.509 37.037 0.00 0.00 0.00 1.47
3942 4350 7.107639 TGTGGTTTCAAGAGATCGATATACA 57.892 36.000 0.00 0.00 0.00 2.29
3943 4351 7.203218 TGTGGTTTCAAGAGATCGATATACAG 58.797 38.462 0.00 0.00 0.00 2.74
3944 4352 7.147897 TGTGGTTTCAAGAGATCGATATACAGT 60.148 37.037 0.00 0.00 0.00 3.55
3945 4353 8.350722 GTGGTTTCAAGAGATCGATATACAGTA 58.649 37.037 0.00 0.00 0.00 2.74
3946 4354 9.078990 TGGTTTCAAGAGATCGATATACAGTAT 57.921 33.333 0.00 0.00 0.00 2.12
3947 4355 9.562583 GGTTTCAAGAGATCGATATACAGTATC 57.437 37.037 0.00 0.00 0.00 2.24
3948 4356 9.562583 GTTTCAAGAGATCGATATACAGTATCC 57.437 37.037 0.00 0.00 0.00 2.59
3949 4357 7.541122 TCAAGAGATCGATATACAGTATCCG 57.459 40.000 0.00 2.90 0.00 4.18
3950 4358 5.994887 AGAGATCGATATACAGTATCCGC 57.005 43.478 0.00 0.00 0.00 5.54
3951 4359 5.429130 AGAGATCGATATACAGTATCCGCA 58.571 41.667 0.00 0.00 0.00 5.69
3952 4360 5.880887 AGAGATCGATATACAGTATCCGCAA 59.119 40.000 0.00 0.00 0.00 4.85
3953 4361 6.374613 AGAGATCGATATACAGTATCCGCAAA 59.625 38.462 0.00 0.00 0.00 3.68
3954 4362 6.920817 AGATCGATATACAGTATCCGCAAAA 58.079 36.000 0.00 0.00 0.00 2.44
3955 4363 7.375834 AGATCGATATACAGTATCCGCAAAAA 58.624 34.615 0.00 0.00 0.00 1.94
4030 4438 5.994668 AGTTTTGAAAAGTTTGACTTGGCAA 59.005 32.000 0.00 0.00 38.66 4.52
4042 4450 9.696917 AGTTTGACTTGGCAAAAATCTTATAAG 57.303 29.630 6.11 6.11 39.26 1.73
4044 4452 7.466746 TGACTTGGCAAAAATCTTATAAGCT 57.533 32.000 7.67 0.00 0.00 3.74
4045 4453 7.315142 TGACTTGGCAAAAATCTTATAAGCTG 58.685 34.615 7.67 1.76 0.00 4.24
4058 4466 8.649973 ATCTTATAAGCTGAGTAAAAAGGACG 57.350 34.615 7.67 0.00 0.00 4.79
4059 4467 7.833786 TCTTATAAGCTGAGTAAAAAGGACGA 58.166 34.615 7.67 0.00 0.00 4.20
4060 4468 8.308931 TCTTATAAGCTGAGTAAAAAGGACGAA 58.691 33.333 7.67 0.00 0.00 3.85
4109 4517 7.195646 TGTTGATCAACATGAAACTCAAGAAC 58.804 34.615 32.36 6.26 45.42 3.01
4137 4545 4.268644 CACTAGATGGTCAACATACAAGCG 59.731 45.833 0.00 0.00 40.72 4.68
4151 4559 8.880878 AACATACAAGCGTATATGTTGTATCA 57.119 30.769 14.29 6.77 45.74 2.15
4213 4621 9.787435 AATCCATATACAACGTGTTTGGTATAT 57.213 29.630 0.00 8.69 39.84 0.86
4214 4622 8.596271 TCCATATACAACGTGTTTGGTATATG 57.404 34.615 21.80 21.80 39.05 1.78
4215 4623 8.205512 TCCATATACAACGTGTTTGGTATATGT 58.794 33.333 24.01 12.39 38.53 2.29
4216 4624 9.478768 CCATATACAACGTGTTTGGTATATGTA 57.521 33.333 24.01 13.63 38.53 2.29
4221 4629 8.951787 ACAACGTGTTTGGTATATGTATATGT 57.048 30.769 0.00 0.00 39.84 2.29
4341 4754 6.927416 TGGATATGTATATGTGGGTTACGTC 58.073 40.000 0.00 0.00 0.00 4.34
4376 4789 3.628942 AGTAACGGGTTTTCTTGGTTGTC 59.371 43.478 0.00 0.00 0.00 3.18
4378 4791 0.309612 CGGGTTTTCTTGGTTGTCCG 59.690 55.000 0.00 0.00 36.30 4.79
4386 4799 0.231279 CTTGGTTGTCCGTTCGTTCG 59.769 55.000 0.00 0.00 36.30 3.95
4391 4804 2.384382 GTTGTCCGTTCGTTCGTTCTA 58.616 47.619 0.00 0.00 0.00 2.10
4399 4812 3.541130 CGTTCGTTCGTTCTATTGATCGT 59.459 43.478 7.35 0.00 36.91 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.092821 CCAAATCGCATTTTCACTCGACTA 59.907 41.667 0.00 0.00 33.59 2.59
17 18 3.296322 TGACCCAAATCGCATTTTCAC 57.704 42.857 0.00 0.00 0.00 3.18
44 45 1.439353 CCATCGGATGGCTGAAACCG 61.439 60.000 23.17 0.00 44.70 4.44
70 71 2.538861 CGAAGACGCTCATCTAGACGTA 59.461 50.000 6.15 0.00 37.83 3.57
100 101 3.988517 GGTTCGAAGAAAGAAGACGATGT 59.011 43.478 0.00 0.00 45.90 3.06
165 208 4.640690 AGGGTGAGGTGGCGAGGT 62.641 66.667 0.00 0.00 0.00 3.85
176 219 3.253838 CGGTTGGGGGAAGGGTGA 61.254 66.667 0.00 0.00 0.00 4.02
224 268 1.692762 GGCTGGGGTTAGAGAGATGGA 60.693 57.143 0.00 0.00 0.00 3.41
230 274 1.965414 TTCATGGCTGGGGTTAGAGA 58.035 50.000 0.00 0.00 0.00 3.10
241 285 2.493278 CCGGAGAAAATGTTTCATGGCT 59.507 45.455 0.00 0.00 0.00 4.75
268 312 1.151908 GGGTGTTAGGGTGGTGCAA 59.848 57.895 0.00 0.00 0.00 4.08
275 319 2.590611 TCTATCTCAGGGGTGTTAGGGT 59.409 50.000 0.00 0.00 0.00 4.34
289 333 4.762251 GCAAACACCCCCATTATCTATCTC 59.238 45.833 0.00 0.00 0.00 2.75
292 336 3.206412 TGGCAAACACCCCCATTATCTAT 59.794 43.478 0.00 0.00 0.00 1.98
294 338 1.360852 TGGCAAACACCCCCATTATCT 59.639 47.619 0.00 0.00 0.00 1.98
295 339 1.480545 GTGGCAAACACCCCCATTATC 59.519 52.381 0.00 0.00 44.49 1.75
296 340 1.567357 GTGGCAAACACCCCCATTAT 58.433 50.000 0.00 0.00 44.49 1.28
297 341 3.059287 GTGGCAAACACCCCCATTA 57.941 52.632 0.00 0.00 44.49 1.90
298 342 3.884318 GTGGCAAACACCCCCATT 58.116 55.556 0.00 0.00 44.49 3.16
306 350 4.919774 TCTATCTTTAGGGTGGCAAACA 57.080 40.909 0.00 0.00 0.00 2.83
307 351 7.040409 CCATTATCTATCTTTAGGGTGGCAAAC 60.040 40.741 0.00 0.00 0.00 2.93
308 352 7.004086 CCATTATCTATCTTTAGGGTGGCAAA 58.996 38.462 0.00 0.00 0.00 3.68
309 353 6.467194 CCCATTATCTATCTTTAGGGTGGCAA 60.467 42.308 0.00 0.00 0.00 4.52
310 354 5.014123 CCCATTATCTATCTTTAGGGTGGCA 59.986 44.000 0.00 0.00 0.00 4.92
311 355 5.250774 TCCCATTATCTATCTTTAGGGTGGC 59.749 44.000 0.00 0.00 36.45 5.01
312 356 6.730977 TCTCCCATTATCTATCTTTAGGGTGG 59.269 42.308 0.00 0.00 36.45 4.61
313 357 7.580495 GCTCTCCCATTATCTATCTTTAGGGTG 60.580 44.444 0.00 0.00 36.45 4.61
314 358 6.442244 GCTCTCCCATTATCTATCTTTAGGGT 59.558 42.308 0.00 0.00 36.45 4.34
315 359 6.671779 AGCTCTCCCATTATCTATCTTTAGGG 59.328 42.308 0.00 0.00 36.38 3.53
316 360 7.732222 AGCTCTCCCATTATCTATCTTTAGG 57.268 40.000 0.00 0.00 0.00 2.69
317 361 9.034800 AGAAGCTCTCCCATTATCTATCTTTAG 57.965 37.037 0.00 0.00 0.00 1.85
335 379 3.832492 GCTCGCCGGAGAAGCTCT 61.832 66.667 9.83 0.00 43.27 4.09
362 406 9.526713 TCGATTTTTGATTGAATGAAGAAACAA 57.473 25.926 0.00 0.00 0.00 2.83
434 816 1.376037 GGGAGTTGAGAGTTGGGCG 60.376 63.158 0.00 0.00 0.00 6.13
439 821 5.117406 AGAAGTTTTGGGAGTTGAGAGTT 57.883 39.130 0.00 0.00 0.00 3.01
481 864 0.175302 AGCTTCATGAGTCTCAGGCG 59.825 55.000 9.67 4.71 0.00 5.52
485 868 7.286313 TCTAGAATCTAGCTTCATGAGTCTCA 58.714 38.462 12.27 4.68 36.68 3.27
488 871 6.863126 GCTTCTAGAATCTAGCTTCATGAGTC 59.137 42.308 12.27 0.00 0.00 3.36
493 876 6.015519 ACATCGCTTCTAGAATCTAGCTTCAT 60.016 38.462 12.27 0.00 0.00 2.57
514 897 4.094590 CCACAGATTCAGCTTCTCAACATC 59.905 45.833 0.00 0.00 0.00 3.06
516 899 3.071457 TCCACAGATTCAGCTTCTCAACA 59.929 43.478 0.00 0.00 0.00 3.33
534 917 0.961753 CCAAGCTTCCCAAACTCCAC 59.038 55.000 0.00 0.00 0.00 4.02
537 920 0.900182 CCCCCAAGCTTCCCAAACTC 60.900 60.000 0.00 0.00 0.00 3.01
554 937 5.370679 TGTAAAGGTGTGTTCTAAAGTCCC 58.629 41.667 0.00 0.00 0.00 4.46
585 968 7.492524 TGGCTTTACATTTACAATCACACAAA 58.507 30.769 0.00 0.00 0.00 2.83
706 1089 3.883744 AAGTTGCTGGCCTCCGTCG 62.884 63.158 3.32 0.00 0.00 5.12
770 1154 1.202758 CCACTAGTGGCCAGTGTTTGA 60.203 52.381 28.48 1.07 44.73 2.69
772 1156 3.725754 CCACTAGTGGCCAGTGTTT 57.274 52.632 28.48 3.90 44.73 2.83
800 1184 0.813184 CTTGGTTCTCGGCATTGCAT 59.187 50.000 11.39 0.00 0.00 3.96
801 1185 0.250684 TCTTGGTTCTCGGCATTGCA 60.251 50.000 11.39 0.00 0.00 4.08
802 1186 0.169009 GTCTTGGTTCTCGGCATTGC 59.831 55.000 0.00 0.00 0.00 3.56
803 1187 0.443869 CGTCTTGGTTCTCGGCATTG 59.556 55.000 0.00 0.00 0.00 2.82
804 1188 1.298859 GCGTCTTGGTTCTCGGCATT 61.299 55.000 0.00 0.00 0.00 3.56
1034 1418 0.377554 GCGCGTGTCTAGAGCTAGAA 59.622 55.000 8.43 0.00 43.12 2.10
1059 1443 2.594592 GGACAGCAAAGCACCGGT 60.595 61.111 0.00 0.00 0.00 5.28
1150 1534 1.741706 CATGGACGAGCAAGCAATTCT 59.258 47.619 0.00 0.00 0.00 2.40
1201 1585 1.464997 GACAACCTGCTCGAACCAATC 59.535 52.381 0.00 0.00 0.00 2.67
1304 1688 2.725008 CTGGAGAGATCGACCGGC 59.275 66.667 0.00 0.00 0.00 6.13
1321 1705 3.318539 TACACACGCGACGAGGAGC 62.319 63.158 15.93 0.00 0.00 4.70
1328 1712 3.307339 TTTTTCTTGTACACACGCGAC 57.693 42.857 15.93 0.00 0.00 5.19
1379 1763 1.754226 ACGGGAAGCATTTTGTTGTGT 59.246 42.857 0.00 0.00 0.00 3.72
1386 1770 1.966762 CCTGCACGGGAAGCATTTT 59.033 52.632 0.00 0.00 41.82 1.82
1864 2248 0.834612 AAAGACCCTGTGGAACGACA 59.165 50.000 0.00 0.00 42.39 4.35
1949 2333 2.754658 CCGTCGGCCAGTAGGAGT 60.755 66.667 2.24 0.00 36.89 3.85
2175 2559 2.125552 CTCACCAGCGCCATCGAA 60.126 61.111 2.29 0.00 38.10 3.71
2381 2765 1.375523 GACGCCCACGAACTTGGAT 60.376 57.895 0.00 0.00 43.93 3.41
2784 3168 2.044252 CCCCTTGCTCTGCTGCAT 60.044 61.111 1.31 0.00 42.96 3.96
3020 3404 2.620562 TGCACCTATCGCATCATGC 58.379 52.632 0.00 0.00 40.69 4.06
3070 3454 1.594293 ACGCACAGTACACACCAGC 60.594 57.895 0.00 0.00 0.00 4.85
3118 3502 7.176340 ACTGAAAAAGGGAAGAATCATGAGAAG 59.824 37.037 0.09 0.00 0.00 2.85
3154 3540 8.190326 TGGTGGATTAGTAGTACAATAGATGG 57.810 38.462 2.52 0.00 0.00 3.51
3175 3561 7.041848 CCAACATACATCATACAGTACATGGTG 60.042 40.741 0.00 3.93 39.85 4.17
3178 3564 6.073058 GCCCAACATACATCATACAGTACATG 60.073 42.308 0.00 0.00 0.00 3.21
3325 3717 3.078891 ACTGAATCTTCCCCTTTCAGC 57.921 47.619 10.84 0.00 46.55 4.26
3332 3724 3.375299 CACAATCGAACTGAATCTTCCCC 59.625 47.826 4.99 0.00 0.00 4.81
3355 3747 9.922305 CGCTCTTATATTTCTTTACAAAGGAAG 57.078 33.333 2.13 0.00 36.96 3.46
3361 3753 9.221933 TCCAAACGCTCTTATATTTCTTTACAA 57.778 29.630 0.00 0.00 0.00 2.41
3362 3754 8.780846 TCCAAACGCTCTTATATTTCTTTACA 57.219 30.769 0.00 0.00 0.00 2.41
3364 3756 7.497909 CCCTCCAAACGCTCTTATATTTCTTTA 59.502 37.037 0.00 0.00 0.00 1.85
3383 3775 4.463050 ACCAAAGTGTATTTCCCTCCAA 57.537 40.909 0.00 0.00 0.00 3.53
3389 3781 4.149598 ACCAGGAACCAAAGTGTATTTCC 58.850 43.478 0.00 0.00 36.71 3.13
3391 3783 4.959839 ACAACCAGGAACCAAAGTGTATTT 59.040 37.500 0.00 0.00 0.00 1.40
3392 3784 4.542697 ACAACCAGGAACCAAAGTGTATT 58.457 39.130 0.00 0.00 0.00 1.89
3393 3785 4.178956 ACAACCAGGAACCAAAGTGTAT 57.821 40.909 0.00 0.00 0.00 2.29
3394 3786 3.655615 ACAACCAGGAACCAAAGTGTA 57.344 42.857 0.00 0.00 0.00 2.90
3395 3787 2.525105 ACAACCAGGAACCAAAGTGT 57.475 45.000 0.00 0.00 0.00 3.55
3396 3788 6.882140 TGTATATACAACCAGGAACCAAAGTG 59.118 38.462 13.24 0.00 32.40 3.16
3397 3789 6.882678 GTGTATATACAACCAGGAACCAAAGT 59.117 38.462 17.07 0.00 38.04 2.66
3398 3790 6.317893 GGTGTATATACAACCAGGAACCAAAG 59.682 42.308 18.58 0.00 37.94 2.77
3399 3791 6.181908 GGTGTATATACAACCAGGAACCAAA 58.818 40.000 18.58 0.00 37.94 3.28
3400 3792 5.747342 GGTGTATATACAACCAGGAACCAA 58.253 41.667 18.58 0.00 37.94 3.67
3401 3793 5.362105 GGTGTATATACAACCAGGAACCA 57.638 43.478 18.58 0.00 37.94 3.67
3480 3872 9.176181 GCAAAACAATGTCGAGTTTAATCTAAA 57.824 29.630 1.46 0.00 36.98 1.85
3481 3873 8.346300 TGCAAAACAATGTCGAGTTTAATCTAA 58.654 29.630 1.46 0.00 36.98 2.10
3482 3874 7.801315 GTGCAAAACAATGTCGAGTTTAATCTA 59.199 33.333 1.46 0.00 36.98 1.98
3483 3875 6.636850 GTGCAAAACAATGTCGAGTTTAATCT 59.363 34.615 1.46 0.00 36.98 2.40
3484 3876 6.636850 AGTGCAAAACAATGTCGAGTTTAATC 59.363 34.615 1.46 0.00 36.98 1.75
3485 3877 6.503524 AGTGCAAAACAATGTCGAGTTTAAT 58.496 32.000 1.46 0.00 36.98 1.40
3486 3878 5.885881 AGTGCAAAACAATGTCGAGTTTAA 58.114 33.333 1.46 0.00 36.98 1.52
3487 3879 5.493133 AGTGCAAAACAATGTCGAGTTTA 57.507 34.783 1.46 0.00 36.98 2.01
3488 3880 4.370364 AGTGCAAAACAATGTCGAGTTT 57.630 36.364 0.00 0.00 39.46 2.66
3489 3881 4.574828 ACTAGTGCAAAACAATGTCGAGTT 59.425 37.500 0.00 0.00 0.00 3.01
3490 3882 4.127171 ACTAGTGCAAAACAATGTCGAGT 58.873 39.130 0.00 0.00 0.00 4.18
3491 3883 4.732285 ACTAGTGCAAAACAATGTCGAG 57.268 40.909 0.00 0.00 0.00 4.04
3492 3884 9.589111 TTATATACTAGTGCAAAACAATGTCGA 57.411 29.630 5.39 0.00 0.00 4.20
3529 3921 8.715191 TTTGCACTGAAGTCAATGTTATTTTT 57.285 26.923 0.00 0.00 0.00 1.94
3530 3922 8.715191 TTTTGCACTGAAGTCAATGTTATTTT 57.285 26.923 0.00 0.00 0.00 1.82
3531 3923 8.715191 TTTTTGCACTGAAGTCAATGTTATTT 57.285 26.923 0.00 0.00 0.00 1.40
3569 3961 9.542462 GTGTGAATAGTGACCTATAATAGCAAA 57.458 33.333 0.00 0.00 32.57 3.68
3570 3962 8.924303 AGTGTGAATAGTGACCTATAATAGCAA 58.076 33.333 0.00 0.00 32.57 3.91
3571 3963 8.478775 AGTGTGAATAGTGACCTATAATAGCA 57.521 34.615 0.00 0.00 32.57 3.49
3578 3970 9.601217 GTCAAAATAGTGTGAATAGTGACCTAT 57.399 33.333 0.00 0.00 35.33 2.57
3579 3971 8.038944 GGTCAAAATAGTGTGAATAGTGACCTA 58.961 37.037 10.91 0.00 45.82 3.08
3580 3972 6.879458 GGTCAAAATAGTGTGAATAGTGACCT 59.121 38.462 10.91 0.00 45.82 3.85
3581 3973 7.073342 GGTCAAAATAGTGTGAATAGTGACC 57.927 40.000 3.47 3.47 43.97 4.02
3582 3974 7.667043 TGGTCAAAATAGTGTGAATAGTGAC 57.333 36.000 0.00 0.00 33.70 3.67
3583 3975 8.684386 TTTGGTCAAAATAGTGTGAATAGTGA 57.316 30.769 0.00 0.00 0.00 3.41
3584 3976 9.912634 ATTTTGGTCAAAATAGTGTGAATAGTG 57.087 29.630 17.06 0.00 45.93 2.74
3588 3980 9.612066 ACAAATTTTGGTCAAAATAGTGTGAAT 57.388 25.926 23.11 7.98 46.76 2.57
3589 3981 9.092876 GACAAATTTTGGTCAAAATAGTGTGAA 57.907 29.630 25.91 3.47 46.76 3.18
3590 3982 8.474025 AGACAAATTTTGGTCAAAATAGTGTGA 58.526 29.630 25.91 4.00 46.76 3.58
3591 3983 8.647143 AGACAAATTTTGGTCAAAATAGTGTG 57.353 30.769 25.91 19.93 46.76 3.82
3592 3984 9.665719 AAAGACAAATTTTGGTCAAAATAGTGT 57.334 25.926 23.53 23.53 46.76 3.55
3598 3990 9.670719 GTTCAAAAAGACAAATTTTGGTCAAAA 57.329 25.926 13.42 10.72 44.18 2.44
3599 3991 8.840321 TGTTCAAAAAGACAAATTTTGGTCAAA 58.160 25.926 13.42 0.00 44.18 2.69
3600 3992 8.383318 TGTTCAAAAAGACAAATTTTGGTCAA 57.617 26.923 13.42 0.00 44.18 3.18
3601 3993 7.875041 TCTGTTCAAAAAGACAAATTTTGGTCA 59.125 29.630 13.42 9.32 44.18 4.02
3602 3994 8.250538 TCTGTTCAAAAAGACAAATTTTGGTC 57.749 30.769 13.42 8.37 44.18 4.02
3603 3995 8.614469 TTCTGTTCAAAAAGACAAATTTTGGT 57.386 26.923 13.42 0.00 44.18 3.67
3604 3996 8.720562 ACTTCTGTTCAAAAAGACAAATTTTGG 58.279 29.630 13.42 0.00 44.18 3.28
3605 3997 9.745323 GACTTCTGTTCAAAAAGACAAATTTTG 57.255 29.630 7.59 7.59 44.97 2.44
3606 3998 9.487790 TGACTTCTGTTCAAAAAGACAAATTTT 57.512 25.926 0.00 0.00 33.86 1.82
3607 3999 9.487790 TTGACTTCTGTTCAAAAAGACAAATTT 57.512 25.926 0.00 0.00 33.81 1.82
3608 4000 9.487790 TTTGACTTCTGTTCAAAAAGACAAATT 57.512 25.926 14.35 0.00 38.65 1.82
3609 4001 9.143631 CTTTGACTTCTGTTCAAAAAGACAAAT 57.856 29.630 16.49 0.00 40.82 2.32
3610 4002 7.598493 CCTTTGACTTCTGTTCAAAAAGACAAA 59.402 33.333 15.89 15.89 40.05 2.83
3611 4003 7.090173 CCTTTGACTTCTGTTCAAAAAGACAA 58.910 34.615 0.00 0.00 34.51 3.18
3612 4004 6.350110 CCCTTTGACTTCTGTTCAAAAAGACA 60.350 38.462 0.00 0.00 33.68 3.41
3613 4005 6.036470 CCCTTTGACTTCTGTTCAAAAAGAC 58.964 40.000 0.00 0.00 33.68 3.01
3614 4006 5.714806 ACCCTTTGACTTCTGTTCAAAAAGA 59.285 36.000 0.00 0.00 33.68 2.52
3615 4007 5.965922 ACCCTTTGACTTCTGTTCAAAAAG 58.034 37.500 0.00 0.00 33.68 2.27
3616 4008 5.993748 ACCCTTTGACTTCTGTTCAAAAA 57.006 34.783 0.00 0.00 33.68 1.94
3617 4009 5.993748 AACCCTTTGACTTCTGTTCAAAA 57.006 34.783 0.00 0.00 33.68 2.44
3618 4010 7.654022 AATAACCCTTTGACTTCTGTTCAAA 57.346 32.000 0.00 0.00 33.13 2.69
3619 4011 7.654022 AAATAACCCTTTGACTTCTGTTCAA 57.346 32.000 0.00 0.00 0.00 2.69
3620 4012 7.654022 AAAATAACCCTTTGACTTCTGTTCA 57.346 32.000 0.00 0.00 0.00 3.18
3658 4050 9.582431 CGACCTTCTATTATACTTGTGAGAAAA 57.418 33.333 0.00 0.00 0.00 2.29
3659 4051 8.963725 TCGACCTTCTATTATACTTGTGAGAAA 58.036 33.333 0.00 0.00 0.00 2.52
3660 4052 8.515695 TCGACCTTCTATTATACTTGTGAGAA 57.484 34.615 0.00 0.00 0.00 2.87
3661 4053 7.774157 ACTCGACCTTCTATTATACTTGTGAGA 59.226 37.037 0.00 0.00 0.00 3.27
3662 4054 7.932335 ACTCGACCTTCTATTATACTTGTGAG 58.068 38.462 0.00 0.00 0.00 3.51
3663 4055 7.876936 ACTCGACCTTCTATTATACTTGTGA 57.123 36.000 0.00 0.00 0.00 3.58
3664 4056 8.928270 AAACTCGACCTTCTATTATACTTGTG 57.072 34.615 0.00 0.00 0.00 3.33
3680 4072 9.952341 GCAAATATTTTTGAAATAAACTCGACC 57.048 29.630 12.18 0.00 44.11 4.79
3723 4115 9.784531 TGGGAAAATAAATTAGCAATTCAACAA 57.215 25.926 0.00 0.00 0.00 2.83
3724 4116 9.956640 ATGGGAAAATAAATTAGCAATTCAACA 57.043 25.926 0.00 0.00 0.00 3.33
3757 4149 7.038587 AGTGTTTGGTTCCTGAGTGTATATACA 60.039 37.037 11.62 11.62 0.00 2.29
3758 4150 7.328737 AGTGTTTGGTTCCTGAGTGTATATAC 58.671 38.462 5.89 5.89 0.00 1.47
3759 4151 7.364408 GGAGTGTTTGGTTCCTGAGTGTATATA 60.364 40.741 0.00 0.00 0.00 0.86
3760 4152 6.374417 AGTGTTTGGTTCCTGAGTGTATAT 57.626 37.500 0.00 0.00 0.00 0.86
3761 4153 5.279809 GGAGTGTTTGGTTCCTGAGTGTATA 60.280 44.000 0.00 0.00 0.00 1.47
3762 4154 4.505039 GGAGTGTTTGGTTCCTGAGTGTAT 60.505 45.833 0.00 0.00 0.00 2.29
3763 4155 3.181458 GGAGTGTTTGGTTCCTGAGTGTA 60.181 47.826 0.00 0.00 0.00 2.90
3764 4156 2.421529 GGAGTGTTTGGTTCCTGAGTGT 60.422 50.000 0.00 0.00 0.00 3.55
3765 4157 2.222027 GGAGTGTTTGGTTCCTGAGTG 58.778 52.381 0.00 0.00 0.00 3.51
3766 4158 1.143073 GGGAGTGTTTGGTTCCTGAGT 59.857 52.381 0.00 0.00 0.00 3.41
3767 4159 1.878102 CGGGAGTGTTTGGTTCCTGAG 60.878 57.143 0.00 0.00 39.29 3.35
3768 4160 0.107831 CGGGAGTGTTTGGTTCCTGA 59.892 55.000 0.00 0.00 39.29 3.86
3769 4161 0.179029 ACGGGAGTGTTTGGTTCCTG 60.179 55.000 0.00 0.00 44.82 3.86
3770 4162 2.227737 ACGGGAGTGTTTGGTTCCT 58.772 52.632 0.00 0.00 44.82 3.36
3771 4163 4.892002 ACGGGAGTGTTTGGTTCC 57.108 55.556 0.00 0.00 44.82 3.62
3790 4182 6.978659 TCTATAAAGTAGTGATCCAAACGCTG 59.021 38.462 0.00 0.00 0.00 5.18
3791 4183 7.108841 TCTATAAAGTAGTGATCCAAACGCT 57.891 36.000 0.00 0.00 0.00 5.07
3792 4184 6.421202 CCTCTATAAAGTAGTGATCCAAACGC 59.579 42.308 0.00 0.00 0.00 4.84
3793 4185 7.713750 TCCTCTATAAAGTAGTGATCCAAACG 58.286 38.462 0.00 0.00 0.00 3.60
3794 4186 9.535878 CTTCCTCTATAAAGTAGTGATCCAAAC 57.464 37.037 0.00 0.00 0.00 2.93
3795 4187 9.268282 ACTTCCTCTATAAAGTAGTGATCCAAA 57.732 33.333 0.00 0.00 34.05 3.28
3796 4188 8.840200 ACTTCCTCTATAAAGTAGTGATCCAA 57.160 34.615 0.00 0.00 34.05 3.53
3797 4189 9.352191 GTACTTCCTCTATAAAGTAGTGATCCA 57.648 37.037 0.00 0.00 38.34 3.41
3798 4190 8.505625 CGTACTTCCTCTATAAAGTAGTGATCC 58.494 40.741 0.00 0.00 38.34 3.36
3799 4191 9.054922 ACGTACTTCCTCTATAAAGTAGTGATC 57.945 37.037 0.00 0.00 38.34 2.92
3800 4192 8.838365 CACGTACTTCCTCTATAAAGTAGTGAT 58.162 37.037 13.52 0.00 38.34 3.06
3801 4193 7.281774 CCACGTACTTCCTCTATAAAGTAGTGA 59.718 40.741 17.04 0.00 38.34 3.41
3802 4194 7.066766 ACCACGTACTTCCTCTATAAAGTAGTG 59.933 40.741 0.00 12.64 38.34 2.74
3803 4195 7.115414 ACCACGTACTTCCTCTATAAAGTAGT 58.885 38.462 0.00 0.00 38.34 2.73
3804 4196 7.565323 ACCACGTACTTCCTCTATAAAGTAG 57.435 40.000 0.00 0.00 38.34 2.57
3805 4197 9.461312 TTTACCACGTACTTCCTCTATAAAGTA 57.539 33.333 0.00 0.00 37.02 2.24
3806 4198 7.944729 TTACCACGTACTTCCTCTATAAAGT 57.055 36.000 0.00 0.00 39.07 2.66
3807 4199 9.813446 AATTTACCACGTACTTCCTCTATAAAG 57.187 33.333 0.00 0.00 0.00 1.85
3810 4202 9.807649 GAAAATTTACCACGTACTTCCTCTATA 57.192 33.333 0.00 0.00 0.00 1.31
3811 4203 8.537858 AGAAAATTTACCACGTACTTCCTCTAT 58.462 33.333 0.00 0.00 0.00 1.98
3812 4204 7.899973 AGAAAATTTACCACGTACTTCCTCTA 58.100 34.615 0.00 0.00 0.00 2.43
3813 4205 6.766429 AGAAAATTTACCACGTACTTCCTCT 58.234 36.000 0.00 0.00 0.00 3.69
3814 4206 8.538409 TTAGAAAATTTACCACGTACTTCCTC 57.462 34.615 0.00 0.00 0.00 3.71
3815 4207 8.943002 CATTAGAAAATTTACCACGTACTTCCT 58.057 33.333 0.00 0.00 0.00 3.36
3816 4208 8.938906 TCATTAGAAAATTTACCACGTACTTCC 58.061 33.333 0.00 0.00 0.00 3.46
3846 4238 6.234177 ACTCTTAGCAACTGTTATTCAAGCT 58.766 36.000 6.15 6.15 34.66 3.74
3857 4249 4.201891 GCCATCAATGACTCTTAGCAACTG 60.202 45.833 0.00 0.00 0.00 3.16
3860 4252 3.282021 GGCCATCAATGACTCTTAGCAA 58.718 45.455 0.00 0.00 0.00 3.91
3896 4304 9.796120 CCACAATGAACTTTTAACTTCACTTTA 57.204 29.630 0.00 0.00 0.00 1.85
3897 4305 8.311109 ACCACAATGAACTTTTAACTTCACTTT 58.689 29.630 0.00 0.00 0.00 2.66
3898 4306 7.836842 ACCACAATGAACTTTTAACTTCACTT 58.163 30.769 0.00 0.00 0.00 3.16
3899 4307 7.404671 ACCACAATGAACTTTTAACTTCACT 57.595 32.000 0.00 0.00 0.00 3.41
3900 4308 8.474006 AAACCACAATGAACTTTTAACTTCAC 57.526 30.769 0.00 0.00 0.00 3.18
3901 4309 8.307483 TGAAACCACAATGAACTTTTAACTTCA 58.693 29.630 0.00 0.00 0.00 3.02
3902 4310 8.696410 TGAAACCACAATGAACTTTTAACTTC 57.304 30.769 0.00 0.00 0.00 3.01
3903 4311 9.150348 CTTGAAACCACAATGAACTTTTAACTT 57.850 29.630 0.00 0.00 0.00 2.66
3904 4312 8.527810 TCTTGAAACCACAATGAACTTTTAACT 58.472 29.630 0.00 0.00 0.00 2.24
3905 4313 8.696410 TCTTGAAACCACAATGAACTTTTAAC 57.304 30.769 0.00 0.00 0.00 2.01
3906 4314 8.744652 TCTCTTGAAACCACAATGAACTTTTAA 58.255 29.630 0.00 0.00 0.00 1.52
3907 4315 8.287439 TCTCTTGAAACCACAATGAACTTTTA 57.713 30.769 0.00 0.00 0.00 1.52
3908 4316 7.169158 TCTCTTGAAACCACAATGAACTTTT 57.831 32.000 0.00 0.00 0.00 2.27
3909 4317 6.773976 TCTCTTGAAACCACAATGAACTTT 57.226 33.333 0.00 0.00 0.00 2.66
3910 4318 6.293626 CGATCTCTTGAAACCACAATGAACTT 60.294 38.462 0.00 0.00 0.00 2.66
3911 4319 5.180117 CGATCTCTTGAAACCACAATGAACT 59.820 40.000 0.00 0.00 0.00 3.01
3912 4320 5.179368 TCGATCTCTTGAAACCACAATGAAC 59.821 40.000 0.00 0.00 0.00 3.18
3913 4321 5.304778 TCGATCTCTTGAAACCACAATGAA 58.695 37.500 0.00 0.00 0.00 2.57
3926 4334 6.183360 TGCGGATACTGTATATCGATCTCTTG 60.183 42.308 20.01 0.00 0.00 3.02
3962 4370 9.914834 GGACAGGAGAGAGTACTATATATTGAT 57.085 37.037 0.00 0.00 0.00 2.57
3963 4371 9.118367 AGGACAGGAGAGAGTACTATATATTGA 57.882 37.037 0.00 0.00 0.00 2.57
3964 4372 9.747898 AAGGACAGGAGAGAGTACTATATATTG 57.252 37.037 0.00 0.00 0.00 1.90
3969 4377 9.629878 CTAAAAAGGACAGGAGAGAGTACTATA 57.370 37.037 0.00 0.00 0.00 1.31
3970 4378 8.117312 ACTAAAAAGGACAGGAGAGAGTACTAT 58.883 37.037 0.00 0.00 0.00 2.12
3979 4387 3.646162 TGCAGACTAAAAAGGACAGGAGA 59.354 43.478 0.00 0.00 0.00 3.71
3983 4391 8.723942 ACTTATATGCAGACTAAAAAGGACAG 57.276 34.615 0.00 0.00 0.00 3.51
4013 4421 7.686438 AAGATTTTTGCCAAGTCAAACTTTT 57.314 28.000 0.00 0.00 36.03 2.27
4016 4424 9.696917 CTTATAAGATTTTTGCCAAGTCAAACT 57.303 29.630 6.64 0.00 35.86 2.66
4041 4449 4.957296 TCTTTCGTCCTTTTTACTCAGCT 58.043 39.130 0.00 0.00 0.00 4.24
4042 4450 4.989168 TCTCTTTCGTCCTTTTTACTCAGC 59.011 41.667 0.00 0.00 0.00 4.26
4044 4452 6.158023 ACTCTCTTTCGTCCTTTTTACTCA 57.842 37.500 0.00 0.00 0.00 3.41
4045 4453 8.027771 TCATACTCTCTTTCGTCCTTTTTACTC 58.972 37.037 0.00 0.00 0.00 2.59
4055 4463 6.613233 TCTTCACTTCATACTCTCTTTCGTC 58.387 40.000 0.00 0.00 0.00 4.20
4109 4517 9.684448 CTTGTATGTTGACCATCTAGTGTATAG 57.316 37.037 0.00 0.00 34.86 1.31
4188 4596 9.214957 CATATACCAAACACGTTGTATATGGAT 57.785 33.333 20.15 8.61 38.52 3.41
4281 4694 7.498900 ACCAAACACATAGTATATGTCCACATG 59.501 37.037 2.26 0.00 37.15 3.21
4314 4727 9.209048 ACGTAACCCACATATACATATCCATAT 57.791 33.333 0.00 0.00 0.00 1.78
4315 4728 8.598202 ACGTAACCCACATATACATATCCATA 57.402 34.615 0.00 0.00 0.00 2.74
4316 4729 7.179516 TGACGTAACCCACATATACATATCCAT 59.820 37.037 0.00 0.00 0.00 3.41
4317 4730 6.494146 TGACGTAACCCACATATACATATCCA 59.506 38.462 0.00 0.00 0.00 3.41
4318 4731 6.927416 TGACGTAACCCACATATACATATCC 58.073 40.000 0.00 0.00 0.00 2.59
4319 4732 7.491372 CCATGACGTAACCCACATATACATATC 59.509 40.741 0.00 0.00 0.00 1.63
4332 4745 2.512974 CGGCCCATGACGTAACCC 60.513 66.667 0.00 0.00 0.00 4.11
4341 4754 4.169696 TTACTCGGCCGGCCCATG 62.170 66.667 39.24 28.98 0.00 3.66
4369 4782 0.459934 AACGAACGAACGGACAACCA 60.460 50.000 0.14 0.00 37.61 3.67
4376 4789 3.062059 CGATCAATAGAACGAACGAACGG 60.062 47.826 0.14 0.00 41.92 4.44
4378 4791 5.060077 TCAACGATCAATAGAACGAACGAAC 59.940 40.000 0.14 0.00 41.92 3.95
4386 4799 7.298122 ACAAACACATCAACGATCAATAGAAC 58.702 34.615 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.