Multiple sequence alignment - TraesCS4D01G119300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G119300 chr4D 100.000 5192 0 0 1 5192 100570884 100565693 0.000000e+00 9588.0
1 TraesCS4D01G119300 chr4D 91.520 342 28 1 10 350 40619821 40619480 2.190000e-128 470.0
2 TraesCS4D01G119300 chr4B 93.705 3447 147 36 1483 4899 142920978 142917572 0.000000e+00 5099.0
3 TraesCS4D01G119300 chr4B 94.694 245 12 1 4948 5192 142917570 142917327 3.790000e-101 379.0
4 TraesCS4D01G119300 chr4B 96.154 52 0 1 417 466 142921031 142920980 3.330000e-12 84.2
5 TraesCS4D01G119300 chr4A 90.906 3123 183 42 1826 4900 475912243 475915312 0.000000e+00 4100.0
6 TraesCS4D01G119300 chr4A 94.825 1372 43 12 438 1785 475910442 475911809 0.000000e+00 2115.0
7 TraesCS4D01G119300 chr4A 90.909 253 17 2 4946 5192 475915311 475915563 8.330000e-88 335.0
8 TraesCS4D01G119300 chr5D 91.570 344 29 0 12 355 198230514 198230171 4.700000e-130 475.0
9 TraesCS4D01G119300 chr5D 93.750 64 4 0 4900 4963 250069675 250069612 4.280000e-16 97.1
10 TraesCS4D01G119300 chr5D 96.491 57 2 0 4900 4956 519201478 519201534 1.540000e-15 95.3
11 TraesCS4D01G119300 chr2D 91.496 341 29 0 10 350 584247917 584248257 2.190000e-128 470.0
12 TraesCS4D01G119300 chr2D 98.276 58 1 0 4900 4957 7542650 7542707 9.200000e-18 102.0
13 TraesCS4D01G119300 chr2D 93.651 63 3 1 4889 4951 441874656 441874595 5.540000e-15 93.5
14 TraesCS4D01G119300 chr2B 91.040 346 29 2 10 353 733043457 733043112 2.830000e-127 466.0
15 TraesCS4D01G119300 chr7D 90.616 341 32 0 10 350 9042170 9042510 2.200000e-123 453.0
16 TraesCS4D01G119300 chr7D 93.651 63 1 3 4886 4947 163351825 163351885 1.990000e-14 91.6
17 TraesCS4D01G119300 chr7A 90.643 342 31 1 10 350 727996727 727997068 2.200000e-123 453.0
18 TraesCS4D01G119300 chr2A 90.643 342 31 1 10 350 712964255 712964596 2.200000e-123 453.0
19 TraesCS4D01G119300 chr2A 95.238 63 3 0 4900 4962 27327111 27327049 3.310000e-17 100.0
20 TraesCS4D01G119300 chr6A 90.588 340 32 0 10 349 473741625 473741964 7.930000e-123 451.0
21 TraesCS4D01G119300 chr6A 89.766 342 34 1 10 350 13606271 13606612 2.220000e-118 436.0
22 TraesCS4D01G119300 chr7B 100.000 53 0 0 4900 4952 47339701 47339753 1.190000e-16 99.0
23 TraesCS4D01G119300 chr3D 93.651 63 1 3 4886 4947 574516612 574516552 1.990000e-14 91.6
24 TraesCS4D01G119300 chr1D 90.000 70 4 2 4889 4956 415405116 415405048 2.580000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G119300 chr4D 100565693 100570884 5191 True 9588.000000 9588 100.000000 1 5192 1 chr4D.!!$R2 5191
1 TraesCS4D01G119300 chr4B 142917327 142921031 3704 True 1854.066667 5099 94.851000 417 5192 3 chr4B.!!$R1 4775
2 TraesCS4D01G119300 chr4A 475910442 475915563 5121 False 2183.333333 4100 92.213333 438 5192 3 chr4A.!!$F1 4754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 845 0.035343 GGGCCAAGAGGTACAAGGTC 60.035 60.000 4.39 0.0 37.19 3.85 F
840 848 1.066071 GCCAAGAGGTACAAGGTCTCC 60.066 57.143 0.00 0.0 37.19 3.71 F
1847 2267 1.202486 AGAAAAACGCCGAGACAGTGA 60.202 47.619 0.00 0.0 0.00 3.41 F
2473 2897 0.179105 TTGCTGTGTGCTGCTTTTGG 60.179 50.000 0.00 0.0 43.37 3.28 F
3243 3697 0.035439 ACCGGATGGCGTTTCTTCAT 60.035 50.000 9.46 0.0 39.70 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2749 0.593128 AGATGTTGCGGTGCTCAAAC 59.407 50.0 0.00 0.0 0.00 2.93 R
2344 2768 0.904865 AGAGATCGGTTCAGGCCACA 60.905 55.0 5.01 0.0 0.00 4.17 R
3059 3513 0.236711 CTGCTTTGTGAGGTTCTGCG 59.763 55.0 0.00 0.0 0.00 5.18 R
3993 4460 0.167908 CATGCTCGGCAAAAGCGTAA 59.832 50.0 2.68 0.0 43.62 3.18 R
4962 5453 0.389948 AGAGGCCGCTTGTCTAAACG 60.390 55.0 1.77 0.0 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.180891 GGCACTCCTTTACTATTCGCT 57.819 47.619 0.00 0.00 0.00 4.93
21 22 4.317671 GGCACTCCTTTACTATTCGCTA 57.682 45.455 0.00 0.00 0.00 4.26
22 23 4.690122 GGCACTCCTTTACTATTCGCTAA 58.310 43.478 0.00 0.00 0.00 3.09
23 24 5.298347 GGCACTCCTTTACTATTCGCTAAT 58.702 41.667 0.00 0.00 0.00 1.73
24 25 5.758784 GGCACTCCTTTACTATTCGCTAATT 59.241 40.000 0.00 0.00 0.00 1.40
25 26 6.073711 GGCACTCCTTTACTATTCGCTAATTC 60.074 42.308 0.00 0.00 0.00 2.17
26 27 6.073711 GCACTCCTTTACTATTCGCTAATTCC 60.074 42.308 0.00 0.00 0.00 3.01
27 28 6.424207 CACTCCTTTACTATTCGCTAATTCCC 59.576 42.308 0.00 0.00 0.00 3.97
28 29 6.326843 ACTCCTTTACTATTCGCTAATTCCCT 59.673 38.462 0.00 0.00 0.00 4.20
29 30 7.133133 TCCTTTACTATTCGCTAATTCCCTT 57.867 36.000 0.00 0.00 0.00 3.95
30 31 6.990349 TCCTTTACTATTCGCTAATTCCCTTG 59.010 38.462 0.00 0.00 0.00 3.61
31 32 6.204882 CCTTTACTATTCGCTAATTCCCTTGG 59.795 42.308 0.00 0.00 0.00 3.61
32 33 4.086706 ACTATTCGCTAATTCCCTTGGG 57.913 45.455 0.00 0.00 0.00 4.12
33 34 3.458487 ACTATTCGCTAATTCCCTTGGGT 59.542 43.478 5.51 0.00 0.00 4.51
34 35 2.891191 TTCGCTAATTCCCTTGGGTT 57.109 45.000 5.51 0.00 0.00 4.11
35 36 2.891191 TCGCTAATTCCCTTGGGTTT 57.109 45.000 5.51 4.09 0.00 3.27
36 37 4.304048 TTCGCTAATTCCCTTGGGTTTA 57.696 40.909 5.51 4.97 0.00 2.01
37 38 3.881220 TCGCTAATTCCCTTGGGTTTAG 58.119 45.455 18.22 18.22 0.00 1.85
38 39 3.264964 TCGCTAATTCCCTTGGGTTTAGT 59.735 43.478 20.89 7.65 0.00 2.24
39 40 4.470664 TCGCTAATTCCCTTGGGTTTAGTA 59.529 41.667 20.89 13.11 0.00 1.82
40 41 4.814771 CGCTAATTCCCTTGGGTTTAGTAG 59.185 45.833 20.89 14.70 0.00 2.57
41 42 5.131067 GCTAATTCCCTTGGGTTTAGTAGG 58.869 45.833 20.89 0.00 0.00 3.18
42 43 5.104235 GCTAATTCCCTTGGGTTTAGTAGGA 60.104 44.000 20.89 0.00 0.00 2.94
43 44 6.410504 GCTAATTCCCTTGGGTTTAGTAGGAT 60.411 42.308 20.89 1.00 0.00 3.24
44 45 7.202158 GCTAATTCCCTTGGGTTTAGTAGGATA 60.202 40.741 20.89 0.00 0.00 2.59
45 46 6.765355 ATTCCCTTGGGTTTAGTAGGATAG 57.235 41.667 5.51 0.00 0.00 2.08
46 47 5.492565 TCCCTTGGGTTTAGTAGGATAGA 57.507 43.478 5.51 0.00 0.00 1.98
47 48 5.857134 TCCCTTGGGTTTAGTAGGATAGAA 58.143 41.667 5.51 0.00 0.00 2.10
48 49 6.458784 TCCCTTGGGTTTAGTAGGATAGAAT 58.541 40.000 5.51 0.00 0.00 2.40
49 50 6.329197 TCCCTTGGGTTTAGTAGGATAGAATG 59.671 42.308 5.51 0.00 0.00 2.67
50 51 6.465894 CCCTTGGGTTTAGTAGGATAGAATGG 60.466 46.154 0.00 0.00 0.00 3.16
51 52 6.465894 CCTTGGGTTTAGTAGGATAGAATGGG 60.466 46.154 0.00 0.00 0.00 4.00
52 53 5.795079 TGGGTTTAGTAGGATAGAATGGGA 58.205 41.667 0.00 0.00 0.00 4.37
53 54 5.844516 TGGGTTTAGTAGGATAGAATGGGAG 59.155 44.000 0.00 0.00 0.00 4.30
54 55 5.845065 GGGTTTAGTAGGATAGAATGGGAGT 59.155 44.000 0.00 0.00 0.00 3.85
55 56 6.014413 GGGTTTAGTAGGATAGAATGGGAGTC 60.014 46.154 0.00 0.00 0.00 3.36
56 57 6.783482 GGTTTAGTAGGATAGAATGGGAGTCT 59.217 42.308 0.00 0.00 0.00 3.24
57 58 7.256012 GGTTTAGTAGGATAGAATGGGAGTCTG 60.256 44.444 0.00 0.00 0.00 3.51
58 59 5.671463 AGTAGGATAGAATGGGAGTCTGA 57.329 43.478 0.00 0.00 0.00 3.27
59 60 6.031964 AGTAGGATAGAATGGGAGTCTGAA 57.968 41.667 0.00 0.00 0.00 3.02
60 61 6.629156 AGTAGGATAGAATGGGAGTCTGAAT 58.371 40.000 0.00 0.00 0.00 2.57
61 62 6.723977 AGTAGGATAGAATGGGAGTCTGAATC 59.276 42.308 0.00 0.00 0.00 2.52
62 63 5.725490 AGGATAGAATGGGAGTCTGAATCT 58.275 41.667 5.02 0.00 0.00 2.40
63 64 5.779771 AGGATAGAATGGGAGTCTGAATCTC 59.220 44.000 5.02 1.04 0.00 2.75
64 65 5.779771 GGATAGAATGGGAGTCTGAATCTCT 59.220 44.000 6.54 3.56 33.06 3.10
65 66 6.269769 GGATAGAATGGGAGTCTGAATCTCTT 59.730 42.308 6.54 0.00 33.06 2.85
66 67 5.612725 AGAATGGGAGTCTGAATCTCTTC 57.387 43.478 6.54 7.58 33.06 2.87
67 68 5.028802 AGAATGGGAGTCTGAATCTCTTCA 58.971 41.667 6.54 1.00 39.07 3.02
68 69 5.486775 AGAATGGGAGTCTGAATCTCTTCAA 59.513 40.000 6.54 0.00 40.78 2.69
69 70 4.815533 TGGGAGTCTGAATCTCTTCAAG 57.184 45.455 6.54 0.00 40.78 3.02
70 71 4.163427 TGGGAGTCTGAATCTCTTCAAGT 58.837 43.478 6.54 0.00 40.78 3.16
71 72 4.221703 TGGGAGTCTGAATCTCTTCAAGTC 59.778 45.833 6.54 0.00 40.78 3.01
72 73 4.221703 GGGAGTCTGAATCTCTTCAAGTCA 59.778 45.833 5.02 0.00 40.78 3.41
73 74 5.104982 GGGAGTCTGAATCTCTTCAAGTCAT 60.105 44.000 5.02 0.00 40.78 3.06
74 75 6.405538 GGAGTCTGAATCTCTTCAAGTCATT 58.594 40.000 5.02 0.00 40.78 2.57
75 76 7.364232 GGGAGTCTGAATCTCTTCAAGTCATTA 60.364 40.741 5.02 0.00 40.78 1.90
76 77 8.037758 GGAGTCTGAATCTCTTCAAGTCATTAA 58.962 37.037 5.02 0.00 40.78 1.40
77 78 9.598517 GAGTCTGAATCTCTTCAAGTCATTAAT 57.401 33.333 0.00 0.00 40.78 1.40
78 79 9.956640 AGTCTGAATCTCTTCAAGTCATTAATT 57.043 29.630 0.00 0.00 40.78 1.40
86 87 9.896645 TCTCTTCAAGTCATTAATTTATGCTCT 57.103 29.630 0.00 0.00 0.00 4.09
87 88 9.932699 CTCTTCAAGTCATTAATTTATGCTCTG 57.067 33.333 0.00 0.00 0.00 3.35
88 89 8.896744 TCTTCAAGTCATTAATTTATGCTCTGG 58.103 33.333 0.00 0.11 0.00 3.86
89 90 8.806429 TTCAAGTCATTAATTTATGCTCTGGA 57.194 30.769 0.00 2.18 0.00 3.86
90 91 8.213518 TCAAGTCATTAATTTATGCTCTGGAC 57.786 34.615 0.00 0.00 0.00 4.02
91 92 7.828717 TCAAGTCATTAATTTATGCTCTGGACA 59.171 33.333 0.00 0.00 0.00 4.02
92 93 8.461222 CAAGTCATTAATTTATGCTCTGGACAA 58.539 33.333 0.00 0.00 0.00 3.18
93 94 8.579850 AGTCATTAATTTATGCTCTGGACAAA 57.420 30.769 0.00 0.00 0.00 2.83
94 95 8.462016 AGTCATTAATTTATGCTCTGGACAAAC 58.538 33.333 0.00 0.00 0.00 2.93
95 96 8.243426 GTCATTAATTTATGCTCTGGACAAACA 58.757 33.333 0.00 0.00 0.00 2.83
96 97 8.801299 TCATTAATTTATGCTCTGGACAAACAA 58.199 29.630 0.00 0.00 0.00 2.83
97 98 9.079833 CATTAATTTATGCTCTGGACAAACAAG 57.920 33.333 0.00 0.00 0.00 3.16
98 99 6.899393 AATTTATGCTCTGGACAAACAAGA 57.101 33.333 0.00 0.00 0.00 3.02
99 100 7.472334 AATTTATGCTCTGGACAAACAAGAT 57.528 32.000 0.00 0.00 0.00 2.40
100 101 5.885230 TTATGCTCTGGACAAACAAGATG 57.115 39.130 0.00 0.00 0.00 2.90
101 102 2.507484 TGCTCTGGACAAACAAGATGG 58.493 47.619 0.00 0.00 0.00 3.51
102 103 2.158623 TGCTCTGGACAAACAAGATGGT 60.159 45.455 0.00 0.00 0.00 3.55
103 104 2.485814 GCTCTGGACAAACAAGATGGTC 59.514 50.000 0.00 0.00 0.00 4.02
104 105 2.738846 CTCTGGACAAACAAGATGGTCG 59.261 50.000 0.00 0.00 0.00 4.79
105 106 2.367241 TCTGGACAAACAAGATGGTCGA 59.633 45.455 0.00 0.00 0.00 4.20
106 107 3.138304 CTGGACAAACAAGATGGTCGAA 58.862 45.455 0.00 0.00 0.00 3.71
107 108 3.750371 TGGACAAACAAGATGGTCGAAT 58.250 40.909 0.00 0.00 0.00 3.34
108 109 3.501828 TGGACAAACAAGATGGTCGAATG 59.498 43.478 0.00 0.00 0.00 2.67
109 110 3.751175 GGACAAACAAGATGGTCGAATGA 59.249 43.478 0.00 0.00 0.00 2.57
110 111 4.215399 GGACAAACAAGATGGTCGAATGAA 59.785 41.667 0.00 0.00 0.00 2.57
111 112 5.362556 ACAAACAAGATGGTCGAATGAAG 57.637 39.130 0.00 0.00 0.00 3.02
112 113 4.161333 CAAACAAGATGGTCGAATGAAGC 58.839 43.478 0.00 0.00 0.00 3.86
113 114 3.340814 ACAAGATGGTCGAATGAAGCT 57.659 42.857 0.00 0.00 0.00 3.74
114 115 3.005554 ACAAGATGGTCGAATGAAGCTG 58.994 45.455 0.00 0.00 0.00 4.24
115 116 1.661341 AGATGGTCGAATGAAGCTGC 58.339 50.000 0.00 0.00 0.00 5.25
116 117 1.065926 AGATGGTCGAATGAAGCTGCA 60.066 47.619 0.00 0.00 0.00 4.41
117 118 1.329906 GATGGTCGAATGAAGCTGCAG 59.670 52.381 10.11 10.11 0.00 4.41
118 119 1.300971 TGGTCGAATGAAGCTGCAGC 61.301 55.000 31.53 31.53 42.49 5.25
119 120 1.427020 GTCGAATGAAGCTGCAGCC 59.573 57.895 34.39 20.80 43.38 4.85
120 121 1.023513 GTCGAATGAAGCTGCAGCCT 61.024 55.000 34.39 23.76 43.38 4.58
121 122 0.321919 TCGAATGAAGCTGCAGCCTT 60.322 50.000 34.39 25.79 43.38 4.35
122 123 1.066215 TCGAATGAAGCTGCAGCCTTA 60.066 47.619 34.39 20.03 43.38 2.69
123 124 1.945394 CGAATGAAGCTGCAGCCTTAT 59.055 47.619 34.39 21.48 43.38 1.73
124 125 2.357009 CGAATGAAGCTGCAGCCTTATT 59.643 45.455 34.39 28.18 43.38 1.40
125 126 3.181493 CGAATGAAGCTGCAGCCTTATTT 60.181 43.478 34.39 21.79 43.38 1.40
126 127 4.035558 CGAATGAAGCTGCAGCCTTATTTA 59.964 41.667 34.39 18.97 43.38 1.40
127 128 4.907879 ATGAAGCTGCAGCCTTATTTAC 57.092 40.909 34.39 16.39 43.38 2.01
128 129 3.684908 TGAAGCTGCAGCCTTATTTACA 58.315 40.909 34.39 18.54 43.38 2.41
129 130 3.691118 TGAAGCTGCAGCCTTATTTACAG 59.309 43.478 34.39 0.00 43.38 2.74
130 131 3.634397 AGCTGCAGCCTTATTTACAGA 57.366 42.857 34.39 0.00 43.38 3.41
131 132 3.955471 AGCTGCAGCCTTATTTACAGAA 58.045 40.909 34.39 0.00 43.38 3.02
132 133 4.530875 AGCTGCAGCCTTATTTACAGAAT 58.469 39.130 34.39 8.36 43.38 2.40
133 134 4.337555 AGCTGCAGCCTTATTTACAGAATG 59.662 41.667 34.39 0.00 43.38 2.67
134 135 4.604976 CTGCAGCCTTATTTACAGAATGC 58.395 43.478 0.00 0.00 42.53 3.56
135 136 4.015764 TGCAGCCTTATTTACAGAATGCA 58.984 39.130 0.00 0.00 42.53 3.96
136 137 4.646040 TGCAGCCTTATTTACAGAATGCAT 59.354 37.500 0.00 0.00 42.53 3.96
137 138 5.827267 TGCAGCCTTATTTACAGAATGCATA 59.173 36.000 0.00 0.00 42.53 3.14
138 139 6.016860 TGCAGCCTTATTTACAGAATGCATAG 60.017 38.462 0.00 0.00 42.53 2.23
139 140 6.205464 GCAGCCTTATTTACAGAATGCATAGA 59.795 38.462 0.00 0.00 42.53 1.98
140 141 7.094463 GCAGCCTTATTTACAGAATGCATAGAT 60.094 37.037 0.00 0.00 42.53 1.98
141 142 9.440773 CAGCCTTATTTACAGAATGCATAGATA 57.559 33.333 0.00 0.00 42.53 1.98
149 150 9.625747 TTTACAGAATGCATAGATATTGGTTCA 57.374 29.630 0.00 0.00 42.53 3.18
150 151 9.797642 TTACAGAATGCATAGATATTGGTTCAT 57.202 29.630 0.00 0.00 42.53 2.57
151 152 8.332996 ACAGAATGCATAGATATTGGTTCATC 57.667 34.615 0.00 0.00 42.53 2.92
152 153 8.162085 ACAGAATGCATAGATATTGGTTCATCT 58.838 33.333 0.00 0.00 42.53 2.90
153 154 9.662947 CAGAATGCATAGATATTGGTTCATCTA 57.337 33.333 0.00 0.00 37.96 1.98
179 180 6.434018 AGAAAGATCATCTTTAAGCACTGC 57.566 37.500 12.83 0.00 45.85 4.40
180 181 6.179040 AGAAAGATCATCTTTAAGCACTGCT 58.821 36.000 12.83 0.00 45.85 4.24
181 182 6.658391 AGAAAGATCATCTTTAAGCACTGCTT 59.342 34.615 19.96 19.96 45.85 3.91
182 183 7.826252 AGAAAGATCATCTTTAAGCACTGCTTA 59.174 33.333 17.89 17.89 45.45 3.09
191 192 2.680312 AGCACTGCTTACGATCATGT 57.320 45.000 0.00 0.00 33.89 3.21
192 193 3.801114 AGCACTGCTTACGATCATGTA 57.199 42.857 0.00 0.00 33.89 2.29
193 194 4.123497 AGCACTGCTTACGATCATGTAA 57.877 40.909 0.00 0.00 33.89 2.41
194 195 4.697514 AGCACTGCTTACGATCATGTAAT 58.302 39.130 0.00 0.00 33.89 1.89
195 196 5.842907 AGCACTGCTTACGATCATGTAATA 58.157 37.500 0.00 0.00 33.89 0.98
196 197 6.280643 AGCACTGCTTACGATCATGTAATAA 58.719 36.000 0.00 0.00 33.89 1.40
197 198 6.931281 AGCACTGCTTACGATCATGTAATAAT 59.069 34.615 0.00 0.00 33.89 1.28
198 199 7.011773 GCACTGCTTACGATCATGTAATAATG 58.988 38.462 0.00 0.00 34.07 1.90
199 200 7.011773 CACTGCTTACGATCATGTAATAATGC 58.988 38.462 0.00 0.00 34.07 3.56
200 201 6.705825 ACTGCTTACGATCATGTAATAATGCA 59.294 34.615 0.00 0.00 34.07 3.96
201 202 7.095481 ACTGCTTACGATCATGTAATAATGCAG 60.095 37.037 19.45 19.45 45.60 4.41
202 203 6.017933 GCTTACGATCATGTAATAATGCAGC 58.982 40.000 0.00 0.00 34.07 5.25
203 204 4.652175 ACGATCATGTAATAATGCAGCG 57.348 40.909 0.00 0.00 0.00 5.18
204 205 3.120546 ACGATCATGTAATAATGCAGCGC 60.121 43.478 0.00 0.00 0.00 5.92
205 206 3.120580 CGATCATGTAATAATGCAGCGCA 60.121 43.478 11.47 5.73 44.86 6.09
206 207 8.950182 TTACGATCATGTAATAATGCAGCGCAT 61.950 37.037 11.47 9.71 38.90 4.73
214 215 3.502455 TGCAGCGCATGTGCTAGC 61.502 61.111 31.90 31.53 45.23 3.42
215 216 3.200593 GCAGCGCATGTGCTAGCT 61.201 61.111 31.90 9.27 45.23 3.32
216 217 1.884464 GCAGCGCATGTGCTAGCTA 60.884 57.895 31.90 5.45 45.23 3.32
217 218 1.431488 GCAGCGCATGTGCTAGCTAA 61.431 55.000 31.90 4.18 45.23 3.09
218 219 1.224075 CAGCGCATGTGCTAGCTAAT 58.776 50.000 31.90 7.29 45.23 1.73
219 220 1.194098 CAGCGCATGTGCTAGCTAATC 59.806 52.381 31.90 0.00 45.23 1.75
220 221 1.202568 AGCGCATGTGCTAGCTAATCA 60.203 47.619 31.53 10.18 45.14 2.57
221 222 1.802960 GCGCATGTGCTAGCTAATCAT 59.197 47.619 23.77 11.92 39.32 2.45
222 223 2.995939 GCGCATGTGCTAGCTAATCATA 59.004 45.455 23.77 0.00 39.32 2.15
223 224 3.061831 GCGCATGTGCTAGCTAATCATAG 59.938 47.826 23.77 12.33 39.32 2.23
224 225 4.240888 CGCATGTGCTAGCTAATCATAGT 58.759 43.478 17.23 0.00 39.32 2.12
225 226 4.687948 CGCATGTGCTAGCTAATCATAGTT 59.312 41.667 17.23 0.00 39.32 2.24
226 227 5.863935 CGCATGTGCTAGCTAATCATAGTTA 59.136 40.000 17.23 0.00 39.32 2.24
227 228 6.533012 CGCATGTGCTAGCTAATCATAGTTAT 59.467 38.462 17.23 0.00 39.32 1.89
228 229 7.253917 CGCATGTGCTAGCTAATCATAGTTATC 60.254 40.741 17.23 2.16 39.32 1.75
229 230 7.253917 GCATGTGCTAGCTAATCATAGTTATCG 60.254 40.741 17.23 3.78 38.21 2.92
230 231 7.215719 TGTGCTAGCTAATCATAGTTATCGT 57.784 36.000 17.23 0.00 0.00 3.73
231 232 8.331730 TGTGCTAGCTAATCATAGTTATCGTA 57.668 34.615 17.23 0.00 0.00 3.43
232 233 8.789762 TGTGCTAGCTAATCATAGTTATCGTAA 58.210 33.333 17.23 0.00 0.00 3.18
233 234 9.790389 GTGCTAGCTAATCATAGTTATCGTAAT 57.210 33.333 17.23 0.00 0.00 1.89
264 265 2.435059 GCTGGTTGGACGAGCCTC 60.435 66.667 4.03 0.00 43.00 4.70
265 266 2.948720 GCTGGTTGGACGAGCCTCT 61.949 63.158 4.03 0.00 43.00 3.69
266 267 1.216710 CTGGTTGGACGAGCCTCTC 59.783 63.158 0.00 0.00 37.63 3.20
278 279 3.940657 GAGCCTCTCGATTTGTTGATG 57.059 47.619 0.00 0.00 0.00 3.07
279 280 3.525537 GAGCCTCTCGATTTGTTGATGA 58.474 45.455 0.00 0.00 0.00 2.92
280 281 3.529533 AGCCTCTCGATTTGTTGATGAG 58.470 45.455 0.00 0.00 0.00 2.90
281 282 2.611292 GCCTCTCGATTTGTTGATGAGG 59.389 50.000 7.10 7.10 41.61 3.86
282 283 3.201290 CCTCTCGATTTGTTGATGAGGG 58.799 50.000 4.15 0.00 36.79 4.30
283 284 3.118629 CCTCTCGATTTGTTGATGAGGGA 60.119 47.826 4.15 0.00 36.79 4.20
284 285 4.507710 CTCTCGATTTGTTGATGAGGGAA 58.492 43.478 0.00 0.00 28.31 3.97
285 286 4.253685 TCTCGATTTGTTGATGAGGGAAC 58.746 43.478 0.00 0.00 0.00 3.62
298 299 1.573108 AGGGAACTCGTGGATGATGT 58.427 50.000 0.00 0.00 32.90 3.06
299 300 2.747177 AGGGAACTCGTGGATGATGTA 58.253 47.619 0.00 0.00 32.90 2.29
300 301 3.104512 AGGGAACTCGTGGATGATGTAA 58.895 45.455 0.00 0.00 32.90 2.41
301 302 3.118738 AGGGAACTCGTGGATGATGTAAC 60.119 47.826 0.00 0.00 32.90 2.50
302 303 3.195661 GGAACTCGTGGATGATGTAACC 58.804 50.000 0.00 0.00 0.00 2.85
303 304 2.579207 ACTCGTGGATGATGTAACCG 57.421 50.000 0.00 0.00 0.00 4.44
304 305 1.822990 ACTCGTGGATGATGTAACCGT 59.177 47.619 0.00 0.00 0.00 4.83
305 306 2.193447 CTCGTGGATGATGTAACCGTG 58.807 52.381 0.00 0.00 0.00 4.94
306 307 1.546923 TCGTGGATGATGTAACCGTGT 59.453 47.619 0.00 0.00 0.00 4.49
307 308 2.028839 TCGTGGATGATGTAACCGTGTT 60.029 45.455 0.00 0.00 0.00 3.32
308 309 2.739913 CGTGGATGATGTAACCGTGTTT 59.260 45.455 0.00 0.00 0.00 2.83
309 310 3.187637 CGTGGATGATGTAACCGTGTTTT 59.812 43.478 0.00 0.00 0.00 2.43
310 311 4.389382 CGTGGATGATGTAACCGTGTTTTA 59.611 41.667 0.00 0.00 0.00 1.52
311 312 5.107026 CGTGGATGATGTAACCGTGTTTTAA 60.107 40.000 0.00 0.00 0.00 1.52
312 313 6.402766 CGTGGATGATGTAACCGTGTTTTAAT 60.403 38.462 0.00 0.00 0.00 1.40
313 314 7.309920 GTGGATGATGTAACCGTGTTTTAATT 58.690 34.615 0.00 0.00 0.00 1.40
314 315 7.483691 GTGGATGATGTAACCGTGTTTTAATTC 59.516 37.037 0.00 0.00 0.00 2.17
315 316 7.175119 TGGATGATGTAACCGTGTTTTAATTCA 59.825 33.333 0.00 0.00 0.00 2.57
316 317 8.024285 GGATGATGTAACCGTGTTTTAATTCAA 58.976 33.333 0.00 0.00 0.00 2.69
317 318 9.567848 GATGATGTAACCGTGTTTTAATTCAAT 57.432 29.630 0.00 0.00 0.00 2.57
319 320 9.828852 TGATGTAACCGTGTTTTAATTCAATAC 57.171 29.630 0.00 0.00 0.00 1.89
320 321 9.828852 GATGTAACCGTGTTTTAATTCAATACA 57.171 29.630 0.00 0.00 0.00 2.29
321 322 9.834628 ATGTAACCGTGTTTTAATTCAATACAG 57.165 29.630 0.00 0.00 30.03 2.74
322 323 7.804129 TGTAACCGTGTTTTAATTCAATACAGC 59.196 33.333 0.00 0.00 30.03 4.40
323 324 6.569179 ACCGTGTTTTAATTCAATACAGCT 57.431 33.333 0.00 0.00 30.03 4.24
324 325 7.675962 ACCGTGTTTTAATTCAATACAGCTA 57.324 32.000 0.00 0.00 30.03 3.32
325 326 7.748847 ACCGTGTTTTAATTCAATACAGCTAG 58.251 34.615 0.00 0.00 30.03 3.42
326 327 6.687105 CCGTGTTTTAATTCAATACAGCTAGC 59.313 38.462 6.62 6.62 30.03 3.42
327 328 6.687105 CGTGTTTTAATTCAATACAGCTAGCC 59.313 38.462 12.13 0.00 30.03 3.93
328 329 7.535139 GTGTTTTAATTCAATACAGCTAGCCA 58.465 34.615 12.13 0.00 30.03 4.75
329 330 8.190784 GTGTTTTAATTCAATACAGCTAGCCAT 58.809 33.333 12.13 1.80 30.03 4.40
330 331 8.190122 TGTTTTAATTCAATACAGCTAGCCATG 58.810 33.333 12.13 6.78 0.00 3.66
331 332 8.405531 GTTTTAATTCAATACAGCTAGCCATGA 58.594 33.333 12.13 6.28 0.00 3.07
332 333 8.518430 TTTAATTCAATACAGCTAGCCATGAA 57.482 30.769 12.13 14.54 0.00 2.57
333 334 6.630444 AATTCAATACAGCTAGCCATGAAG 57.370 37.500 12.13 0.00 0.00 3.02
334 335 5.357742 TTCAATACAGCTAGCCATGAAGA 57.642 39.130 12.13 0.45 0.00 2.87
335 336 4.697514 TCAATACAGCTAGCCATGAAGAC 58.302 43.478 12.13 0.00 0.00 3.01
336 337 3.760580 ATACAGCTAGCCATGAAGACC 57.239 47.619 12.13 0.00 0.00 3.85
337 338 1.577736 ACAGCTAGCCATGAAGACCT 58.422 50.000 12.13 0.00 0.00 3.85
338 339 1.484240 ACAGCTAGCCATGAAGACCTC 59.516 52.381 12.13 0.00 0.00 3.85
339 340 1.761784 CAGCTAGCCATGAAGACCTCT 59.238 52.381 12.13 0.00 0.00 3.69
340 341 2.170187 CAGCTAGCCATGAAGACCTCTT 59.830 50.000 12.13 0.00 39.23 2.85
390 391 6.811253 TTTGCGAATACACCAATTCTAAGT 57.189 33.333 0.00 0.00 34.34 2.24
391 392 7.908827 TTTGCGAATACACCAATTCTAAGTA 57.091 32.000 0.00 0.00 34.34 2.24
392 393 7.534085 TTGCGAATACACCAATTCTAAGTAG 57.466 36.000 0.00 0.00 34.34 2.57
393 394 6.636705 TGCGAATACACCAATTCTAAGTAGT 58.363 36.000 0.00 0.00 34.34 2.73
394 395 7.774134 TGCGAATACACCAATTCTAAGTAGTA 58.226 34.615 0.00 0.00 34.34 1.82
395 396 8.418662 TGCGAATACACCAATTCTAAGTAGTAT 58.581 33.333 0.00 0.00 34.34 2.12
396 397 9.903682 GCGAATACACCAATTCTAAGTAGTATA 57.096 33.333 0.00 0.00 34.34 1.47
513 521 1.532437 CCGTAAACCCACTTTTCCGAC 59.468 52.381 0.00 0.00 0.00 4.79
662 670 2.584391 GCACCGGTCTTCCTCACCT 61.584 63.158 2.59 0.00 0.00 4.00
837 845 0.035343 GGGCCAAGAGGTACAAGGTC 60.035 60.000 4.39 0.00 37.19 3.85
840 848 1.066071 GCCAAGAGGTACAAGGTCTCC 60.066 57.143 0.00 0.00 37.19 3.71
1117 1128 2.551270 GGTTCAGCTGCGTCAACG 59.449 61.111 9.47 0.00 43.27 4.10
1185 1196 2.534042 TGACGGAGAGGGAGAAGATT 57.466 50.000 0.00 0.00 0.00 2.40
1224 1235 4.227134 AGGGCGTATCAGCAGCGG 62.227 66.667 0.00 0.00 39.27 5.52
1354 1365 2.227089 CTGCGTCCAGAGGTGGTACC 62.227 65.000 4.43 4.43 45.28 3.34
1401 1412 3.264450 AGGTGATCAACTTCGGGAATCTT 59.736 43.478 7.68 0.00 0.00 2.40
1446 1457 2.421399 CGTCGAGGGGGAGGTAACC 61.421 68.421 0.00 0.00 37.17 2.85
1558 1569 5.815740 CAGGTATATGTACTGGAAACACCAC 59.184 44.000 0.00 0.00 44.64 4.16
1564 1575 2.994186 ACTGGAAACACCACGTACTT 57.006 45.000 0.00 0.00 44.64 2.24
1565 1576 4.340666 TGTACTGGAAACACCACGTACTTA 59.659 41.667 18.87 7.04 44.64 2.24
1566 1577 3.721035 ACTGGAAACACCACGTACTTAC 58.279 45.455 0.00 0.00 44.64 2.34
1568 1579 4.202284 ACTGGAAACACCACGTACTTACAT 60.202 41.667 0.00 0.00 44.64 2.29
1569 1580 4.059511 TGGAAACACCACGTACTTACATG 58.940 43.478 0.00 0.00 44.64 3.21
1659 1684 3.765511 CCACAATTCATGTCAAGTCCCAT 59.234 43.478 0.00 0.00 41.46 4.00
1847 2267 1.202486 AGAAAAACGCCGAGACAGTGA 60.202 47.619 0.00 0.00 0.00 3.41
1948 2371 4.023193 GGTCATATCTTTAACATTGGGGCG 60.023 45.833 0.00 0.00 0.00 6.13
2206 2629 2.178580 TCTGCCTTAAAATTGCTGGGG 58.821 47.619 0.00 0.00 0.00 4.96
2216 2639 7.310361 CCTTAAAATTGCTGGGGAAGTTCATAA 60.310 37.037 5.01 0.00 0.00 1.90
2219 2642 2.917933 TGCTGGGGAAGTTCATAATCG 58.082 47.619 5.01 0.00 0.00 3.34
2254 2677 1.816835 GTAGTTTAAGCCCTGTTGCCC 59.183 52.381 0.00 0.00 0.00 5.36
2281 2705 6.713903 ACCTTATGCATTTGTATCTGATGGAG 59.286 38.462 3.54 0.00 0.00 3.86
2325 2749 2.973899 CCTGGAGGAGGTGTGACG 59.026 66.667 0.00 0.00 37.02 4.35
2344 2768 0.593128 GTTTGAGCACCGCAACATCT 59.407 50.000 0.00 0.00 0.00 2.90
2367 2791 1.066587 CCTGAACCGATCTCTCGCC 59.933 63.158 0.00 0.00 43.66 5.54
2370 2794 2.439701 AACCGATCTCTCGCCGGA 60.440 61.111 5.05 0.00 45.58 5.14
2425 2849 3.629398 GGTGAGTTGGTGATGGATGATTC 59.371 47.826 0.00 0.00 0.00 2.52
2469 2893 0.819582 AGTTTTGCTGTGTGCTGCTT 59.180 45.000 0.00 0.00 43.37 3.91
2473 2897 0.179105 TTGCTGTGTGCTGCTTTTGG 60.179 50.000 0.00 0.00 43.37 3.28
2477 2903 2.859806 GCTGTGTGCTGCTTTTGGTTAG 60.860 50.000 0.00 0.00 38.95 2.34
2482 2908 4.032786 GTGTGCTGCTTTTGGTTAGTTTTG 59.967 41.667 0.00 0.00 0.00 2.44
2485 2911 4.051237 GCTGCTTTTGGTTAGTTTTGGAG 58.949 43.478 0.00 0.00 0.00 3.86
2505 2931 1.940613 GACAGTCACTTGGTTGGTGTC 59.059 52.381 0.00 0.00 36.25 3.67
2526 2952 4.637977 GTCAGAGGAATTTTGCTTAGGAGG 59.362 45.833 0.00 0.00 0.00 4.30
2555 2989 2.048444 ATCCACACATCTGGACATGC 57.952 50.000 0.00 0.00 43.38 4.06
2591 3025 6.799926 ATATCCATGTTTTTGTTTGGTTGC 57.200 33.333 0.00 0.00 0.00 4.17
2899 3351 5.600696 ACAGCATCGATTGTGTATCACATA 58.399 37.500 7.49 0.00 44.16 2.29
2961 3415 4.481368 TTGTGTACCTCCTTTCGCATAT 57.519 40.909 0.00 0.00 0.00 1.78
2988 3442 7.798596 ATATCTCCATGAACACTCAAATGAC 57.201 36.000 0.00 0.00 34.49 3.06
3011 3465 7.500227 TGACTCCTTTTCATGAATCATATCCAC 59.500 37.037 9.40 0.00 0.00 4.02
3012 3466 7.348815 ACTCCTTTTCATGAATCATATCCACA 58.651 34.615 9.40 0.00 0.00 4.17
3013 3467 8.003044 ACTCCTTTTCATGAATCATATCCACAT 58.997 33.333 9.40 0.00 0.00 3.21
3014 3468 8.771521 TCCTTTTCATGAATCATATCCACATT 57.228 30.769 9.40 0.00 0.00 2.71
3015 3469 9.204337 TCCTTTTCATGAATCATATCCACATTT 57.796 29.630 9.40 0.00 0.00 2.32
3090 3544 1.331756 ACAAAGCAGAGCAAGTTCACG 59.668 47.619 0.00 0.00 0.00 4.35
3164 3618 3.000819 ACATGGGCTCCGGACGAA 61.001 61.111 0.00 0.00 0.00 3.85
3243 3697 0.035439 ACCGGATGGCGTTTCTTCAT 60.035 50.000 9.46 0.00 39.70 2.57
3319 3773 4.365051 CAGATGCATCTTCCAGGTATGGC 61.365 52.174 26.70 0.00 39.89 4.40
3342 3796 9.742144 TGGCTTAAGTGGTTAATGAGTAAATTA 57.258 29.630 4.02 0.00 0.00 1.40
3392 3846 6.693315 TTCAAAGAACTACACTTTCAAGGG 57.307 37.500 0.00 0.00 35.74 3.95
3458 3913 8.986929 AAAAGTGCATTATTCTATAGAAGGCT 57.013 30.769 19.51 6.80 37.48 4.58
3463 3918 6.646653 TGCATTATTCTATAGAAGGCTGTTCG 59.353 38.462 19.51 5.15 37.48 3.95
3472 3927 1.745320 AAGGCTGTTCGTCGTCAGGT 61.745 55.000 16.79 0.00 32.94 4.00
3555 4013 6.442541 TTGTAGGAGTAAAATCCAGGTTCA 57.557 37.500 0.00 0.00 42.26 3.18
3993 4460 1.260561 GTGATGAAGAACACGCACGTT 59.739 47.619 0.00 0.00 31.21 3.99
4092 4559 2.561956 CGGCCAGGGATCGTCGTAT 61.562 63.158 2.24 0.00 0.00 3.06
4224 4691 2.665185 GACCTTCCGCGCAACTGT 60.665 61.111 8.75 0.00 0.00 3.55
4225 4692 1.373748 GACCTTCCGCGCAACTGTA 60.374 57.895 8.75 0.00 0.00 2.74
4232 4700 2.317609 CGCGCAACTGTACCAGCTT 61.318 57.895 8.75 0.00 34.37 3.74
4252 4722 6.488006 CAGCTTAGGCCACATATACATTTTCT 59.512 38.462 5.01 0.00 39.73 2.52
4270 4740 7.637132 ACATTTTCTAACGTGTACTTTGTTTCG 59.363 33.333 0.00 0.00 0.00 3.46
4305 4775 5.023533 TGTTAGCTGCTAAGGTATTCCTG 57.976 43.478 21.62 0.00 44.35 3.86
4306 4776 2.629336 AGCTGCTAAGGTATTCCTGC 57.371 50.000 0.00 0.00 44.35 4.85
4307 4777 1.839994 AGCTGCTAAGGTATTCCTGCA 59.160 47.619 0.00 3.79 44.35 4.41
4308 4778 1.943340 GCTGCTAAGGTATTCCTGCAC 59.057 52.381 0.00 0.00 44.35 4.57
4423 4899 6.213600 GGTGTAGATGGTCCCAGTATGATAAT 59.786 42.308 0.00 0.00 39.69 1.28
4424 4900 7.099764 GTGTAGATGGTCCCAGTATGATAATG 58.900 42.308 0.00 0.00 39.69 1.90
4425 4901 7.016296 TGTAGATGGTCCCAGTATGATAATGA 58.984 38.462 0.88 0.00 39.69 2.57
4426 4902 6.617782 AGATGGTCCCAGTATGATAATGAG 57.382 41.667 0.88 0.00 39.69 2.90
4427 4903 6.326161 AGATGGTCCCAGTATGATAATGAGA 58.674 40.000 0.88 0.00 39.69 3.27
4671 5148 0.472471 TTCCTCCTGCGAAACAAGGT 59.528 50.000 0.00 0.00 29.57 3.50
4672 5149 1.344065 TCCTCCTGCGAAACAAGGTA 58.656 50.000 0.00 0.00 29.57 3.08
4692 5169 8.944029 CAAGGTATAAGCAGATAATTCAGATGG 58.056 37.037 0.00 0.00 0.00 3.51
4719 5197 2.703007 ACCAGCTCTAGGGATCATCAAC 59.297 50.000 0.00 0.00 0.00 3.18
4816 5304 7.469537 TCTAAAGTTGAAAAACCAGGAAACA 57.530 32.000 0.00 0.00 0.00 2.83
4823 5311 8.973182 AGTTGAAAAACCAGGAAACAATACTAA 58.027 29.630 0.00 0.00 0.00 2.24
4861 5352 4.950050 AGATCTTGGCGACTAACCAATAG 58.050 43.478 0.00 0.00 45.84 1.73
4862 5353 4.406003 AGATCTTGGCGACTAACCAATAGT 59.594 41.667 0.00 0.00 45.84 2.12
4863 5354 5.597182 AGATCTTGGCGACTAACCAATAGTA 59.403 40.000 0.00 0.00 45.84 1.82
4882 5373 9.669353 CAATAGTAACATGAACATAAATGGCTC 57.331 33.333 0.00 0.00 0.00 4.70
4889 5380 6.094603 ACATGAACATAAATGGCTCTTGAGAC 59.905 38.462 0.00 0.00 0.00 3.36
4900 5391 4.021894 TGGCTCTTGAGACTTCTTCACTAC 60.022 45.833 5.01 0.00 0.00 2.73
4901 5392 4.219725 GGCTCTTGAGACTTCTTCACTACT 59.780 45.833 1.30 0.00 0.00 2.57
4902 5393 5.416326 GGCTCTTGAGACTTCTTCACTACTA 59.584 44.000 1.30 0.00 0.00 1.82
4903 5394 6.404293 GGCTCTTGAGACTTCTTCACTACTAG 60.404 46.154 1.30 0.00 0.00 2.57
4904 5395 6.150474 GCTCTTGAGACTTCTTCACTACTAGT 59.850 42.308 0.00 0.00 0.00 2.57
4906 5397 6.999272 TCTTGAGACTTCTTCACTACTAGTGT 59.001 38.462 14.63 0.00 46.03 3.55
4907 5398 8.155510 TCTTGAGACTTCTTCACTACTAGTGTA 58.844 37.037 14.63 5.85 46.03 2.90
4908 5399 7.908827 TGAGACTTCTTCACTACTAGTGTAG 57.091 40.000 14.63 14.27 46.03 2.74
4920 5411 6.137227 CTACTAGTGTAGTGTCAAAAACGC 57.863 41.667 5.39 0.00 40.81 4.84
4922 5413 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
4923 5414 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
4924 5415 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
4925 5416 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
4926 5417 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
4927 5418 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
4928 5419 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
4929 5420 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
4930 5421 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
4933 5424 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4934 5425 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4935 5426 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4936 5427 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4937 5428 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4938 5429 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4939 5430 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4940 5431 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4941 5432 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4942 5433 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4943 5434 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4944 5435 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4945 5436 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4946 5437 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4962 5453 5.055144 AGGGAGTAGAAAAGAAACGTCAAC 58.945 41.667 0.00 0.00 0.00 3.18
5034 5525 3.777106 TGCCTCAGACATAATGGGATC 57.223 47.619 0.00 0.00 0.00 3.36
5039 5530 5.688807 CCTCAGACATAATGGGATCACTTT 58.311 41.667 0.00 0.00 0.00 2.66
5060 5558 3.352554 TCGTTGTACGACACTGCTAAA 57.647 42.857 13.69 0.00 46.73 1.85
5090 5588 1.352352 AGAACAGGTGCAGCAGGTTAT 59.648 47.619 19.63 15.60 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.180891 AGCGAATAGTAAAGGAGTGCC 57.819 47.619 0.00 0.00 0.00 5.01
3 4 6.326843 AGGGAATTAGCGAATAGTAAAGGAGT 59.673 38.462 0.00 0.00 0.00 3.85
4 5 6.760291 AGGGAATTAGCGAATAGTAAAGGAG 58.240 40.000 0.00 0.00 0.00 3.69
5 6 6.742559 AGGGAATTAGCGAATAGTAAAGGA 57.257 37.500 0.00 0.00 0.00 3.36
6 7 6.204882 CCAAGGGAATTAGCGAATAGTAAAGG 59.795 42.308 0.00 0.00 0.00 3.11
7 8 6.204882 CCCAAGGGAATTAGCGAATAGTAAAG 59.795 42.308 0.00 0.00 37.50 1.85
8 9 6.059484 CCCAAGGGAATTAGCGAATAGTAAA 58.941 40.000 0.00 0.00 37.50 2.01
9 10 5.131475 ACCCAAGGGAATTAGCGAATAGTAA 59.869 40.000 13.15 0.00 38.96 2.24
10 11 4.657039 ACCCAAGGGAATTAGCGAATAGTA 59.343 41.667 13.15 0.00 38.96 1.82
11 12 3.458487 ACCCAAGGGAATTAGCGAATAGT 59.542 43.478 13.15 0.00 38.96 2.12
12 13 4.086706 ACCCAAGGGAATTAGCGAATAG 57.913 45.455 13.15 0.00 38.96 1.73
13 14 4.513406 AACCCAAGGGAATTAGCGAATA 57.487 40.909 13.15 0.00 38.96 1.75
14 15 3.382083 AACCCAAGGGAATTAGCGAAT 57.618 42.857 13.15 0.00 38.96 3.34
15 16 2.891191 AACCCAAGGGAATTAGCGAA 57.109 45.000 13.15 0.00 38.96 4.70
16 17 2.891191 AAACCCAAGGGAATTAGCGA 57.109 45.000 13.15 0.00 38.96 4.93
17 18 3.617284 ACTAAACCCAAGGGAATTAGCG 58.383 45.455 23.19 11.23 39.45 4.26
18 19 5.104235 TCCTACTAAACCCAAGGGAATTAGC 60.104 44.000 23.19 0.00 39.45 3.09
19 20 6.570654 TCCTACTAAACCCAAGGGAATTAG 57.429 41.667 22.35 22.35 40.48 1.73
20 21 8.075621 TCTATCCTACTAAACCCAAGGGAATTA 58.924 37.037 13.15 9.61 38.96 1.40
21 22 6.912561 TCTATCCTACTAAACCCAAGGGAATT 59.087 38.462 13.15 8.95 38.96 2.17
22 23 6.458784 TCTATCCTACTAAACCCAAGGGAAT 58.541 40.000 13.15 2.38 38.96 3.01
23 24 5.857134 TCTATCCTACTAAACCCAAGGGAA 58.143 41.667 13.15 0.00 38.96 3.97
24 25 5.492565 TCTATCCTACTAAACCCAAGGGA 57.507 43.478 13.15 0.00 38.96 4.20
25 26 6.465894 CCATTCTATCCTACTAAACCCAAGGG 60.466 46.154 2.91 2.91 42.03 3.95
26 27 6.465894 CCCATTCTATCCTACTAAACCCAAGG 60.466 46.154 0.00 0.00 0.00 3.61
27 28 6.329197 TCCCATTCTATCCTACTAAACCCAAG 59.671 42.308 0.00 0.00 0.00 3.61
28 29 6.214278 TCCCATTCTATCCTACTAAACCCAA 58.786 40.000 0.00 0.00 0.00 4.12
29 30 5.795079 TCCCATTCTATCCTACTAAACCCA 58.205 41.667 0.00 0.00 0.00 4.51
30 31 5.845065 ACTCCCATTCTATCCTACTAAACCC 59.155 44.000 0.00 0.00 0.00 4.11
31 32 6.783482 AGACTCCCATTCTATCCTACTAAACC 59.217 42.308 0.00 0.00 0.00 3.27
32 33 7.506261 TCAGACTCCCATTCTATCCTACTAAAC 59.494 40.741 0.00 0.00 0.00 2.01
33 34 7.592736 TCAGACTCCCATTCTATCCTACTAAA 58.407 38.462 0.00 0.00 0.00 1.85
34 35 7.162973 TCAGACTCCCATTCTATCCTACTAA 57.837 40.000 0.00 0.00 0.00 2.24
35 36 6.781857 TCAGACTCCCATTCTATCCTACTA 57.218 41.667 0.00 0.00 0.00 1.82
36 37 5.671463 TCAGACTCCCATTCTATCCTACT 57.329 43.478 0.00 0.00 0.00 2.57
37 38 6.723977 AGATTCAGACTCCCATTCTATCCTAC 59.276 42.308 0.00 0.00 0.00 3.18
38 39 6.868826 AGATTCAGACTCCCATTCTATCCTA 58.131 40.000 0.00 0.00 0.00 2.94
39 40 5.725490 AGATTCAGACTCCCATTCTATCCT 58.275 41.667 0.00 0.00 0.00 3.24
40 41 5.779771 AGAGATTCAGACTCCCATTCTATCC 59.220 44.000 0.00 0.00 35.27 2.59
41 42 6.916360 AGAGATTCAGACTCCCATTCTATC 57.084 41.667 0.00 0.00 35.27 2.08
42 43 6.843333 TGAAGAGATTCAGACTCCCATTCTAT 59.157 38.462 0.00 0.00 35.27 1.98
43 44 6.197903 TGAAGAGATTCAGACTCCCATTCTA 58.802 40.000 0.00 0.00 35.27 2.10
44 45 5.028802 TGAAGAGATTCAGACTCCCATTCT 58.971 41.667 0.00 0.00 35.27 2.40
45 46 5.350504 TGAAGAGATTCAGACTCCCATTC 57.649 43.478 0.00 0.00 35.27 2.67
46 47 5.250313 ACTTGAAGAGATTCAGACTCCCATT 59.750 40.000 0.00 0.00 35.27 3.16
47 48 4.782156 ACTTGAAGAGATTCAGACTCCCAT 59.218 41.667 0.00 0.00 35.27 4.00
48 49 4.163427 ACTTGAAGAGATTCAGACTCCCA 58.837 43.478 0.00 0.00 35.27 4.37
49 50 4.221703 TGACTTGAAGAGATTCAGACTCCC 59.778 45.833 0.00 0.00 35.27 4.30
50 51 5.398603 TGACTTGAAGAGATTCAGACTCC 57.601 43.478 0.00 0.00 35.27 3.85
51 52 8.994429 TTAATGACTTGAAGAGATTCAGACTC 57.006 34.615 0.00 0.00 31.87 3.36
52 53 9.956640 AATTAATGACTTGAAGAGATTCAGACT 57.043 29.630 0.00 0.00 31.87 3.24
60 61 9.896645 AGAGCATAAATTAATGACTTGAAGAGA 57.103 29.630 0.00 0.00 0.00 3.10
61 62 9.932699 CAGAGCATAAATTAATGACTTGAAGAG 57.067 33.333 0.00 0.00 0.00 2.85
62 63 8.896744 CCAGAGCATAAATTAATGACTTGAAGA 58.103 33.333 0.00 0.00 0.00 2.87
63 64 8.896744 TCCAGAGCATAAATTAATGACTTGAAG 58.103 33.333 0.00 0.00 0.00 3.02
64 65 8.677300 GTCCAGAGCATAAATTAATGACTTGAA 58.323 33.333 0.00 0.00 0.00 2.69
65 66 7.828717 TGTCCAGAGCATAAATTAATGACTTGA 59.171 33.333 0.00 0.00 0.00 3.02
66 67 7.988737 TGTCCAGAGCATAAATTAATGACTTG 58.011 34.615 0.00 0.00 0.00 3.16
67 68 8.579850 TTGTCCAGAGCATAAATTAATGACTT 57.420 30.769 0.00 0.00 0.00 3.01
68 69 8.462016 GTTTGTCCAGAGCATAAATTAATGACT 58.538 33.333 0.00 0.00 0.00 3.41
69 70 8.243426 TGTTTGTCCAGAGCATAAATTAATGAC 58.757 33.333 0.00 0.00 0.00 3.06
70 71 8.347004 TGTTTGTCCAGAGCATAAATTAATGA 57.653 30.769 0.00 0.00 0.00 2.57
71 72 8.984891 TTGTTTGTCCAGAGCATAAATTAATG 57.015 30.769 0.00 0.00 0.00 1.90
72 73 9.023962 TCTTGTTTGTCCAGAGCATAAATTAAT 57.976 29.630 0.00 0.00 0.00 1.40
73 74 8.402798 TCTTGTTTGTCCAGAGCATAAATTAA 57.597 30.769 0.00 0.00 0.00 1.40
74 75 7.994425 TCTTGTTTGTCCAGAGCATAAATTA 57.006 32.000 0.00 0.00 0.00 1.40
75 76 6.899393 TCTTGTTTGTCCAGAGCATAAATT 57.101 33.333 0.00 0.00 0.00 1.82
76 77 6.127535 CCATCTTGTTTGTCCAGAGCATAAAT 60.128 38.462 0.00 0.00 0.00 1.40
77 78 5.183713 CCATCTTGTTTGTCCAGAGCATAAA 59.816 40.000 0.00 0.00 0.00 1.40
78 79 4.701651 CCATCTTGTTTGTCCAGAGCATAA 59.298 41.667 0.00 0.00 0.00 1.90
79 80 4.263462 ACCATCTTGTTTGTCCAGAGCATA 60.263 41.667 0.00 0.00 0.00 3.14
80 81 3.087031 CCATCTTGTTTGTCCAGAGCAT 58.913 45.455 0.00 0.00 0.00 3.79
81 82 2.158623 ACCATCTTGTTTGTCCAGAGCA 60.159 45.455 0.00 0.00 0.00 4.26
82 83 2.485814 GACCATCTTGTTTGTCCAGAGC 59.514 50.000 0.00 0.00 0.00 4.09
83 84 2.738846 CGACCATCTTGTTTGTCCAGAG 59.261 50.000 0.00 0.00 0.00 3.35
84 85 2.367241 TCGACCATCTTGTTTGTCCAGA 59.633 45.455 0.00 0.00 0.00 3.86
85 86 2.766313 TCGACCATCTTGTTTGTCCAG 58.234 47.619 0.00 0.00 0.00 3.86
86 87 2.920724 TCGACCATCTTGTTTGTCCA 57.079 45.000 0.00 0.00 0.00 4.02
87 88 3.751175 TCATTCGACCATCTTGTTTGTCC 59.249 43.478 0.00 0.00 0.00 4.02
88 89 5.356882 TTCATTCGACCATCTTGTTTGTC 57.643 39.130 0.00 0.00 0.00 3.18
89 90 4.320494 GCTTCATTCGACCATCTTGTTTGT 60.320 41.667 0.00 0.00 0.00 2.83
90 91 4.083110 AGCTTCATTCGACCATCTTGTTTG 60.083 41.667 0.00 0.00 0.00 2.93
91 92 4.074970 AGCTTCATTCGACCATCTTGTTT 58.925 39.130 0.00 0.00 0.00 2.83
92 93 3.438087 CAGCTTCATTCGACCATCTTGTT 59.562 43.478 0.00 0.00 0.00 2.83
93 94 3.005554 CAGCTTCATTCGACCATCTTGT 58.994 45.455 0.00 0.00 0.00 3.16
94 95 2.223203 GCAGCTTCATTCGACCATCTTG 60.223 50.000 0.00 0.00 0.00 3.02
95 96 2.012673 GCAGCTTCATTCGACCATCTT 58.987 47.619 0.00 0.00 0.00 2.40
96 97 1.065926 TGCAGCTTCATTCGACCATCT 60.066 47.619 0.00 0.00 0.00 2.90
97 98 1.329906 CTGCAGCTTCATTCGACCATC 59.670 52.381 0.00 0.00 0.00 3.51
98 99 1.376543 CTGCAGCTTCATTCGACCAT 58.623 50.000 0.00 0.00 0.00 3.55
99 100 1.300971 GCTGCAGCTTCATTCGACCA 61.301 55.000 31.33 0.00 38.21 4.02
100 101 1.427020 GCTGCAGCTTCATTCGACC 59.573 57.895 31.33 0.00 38.21 4.79
101 102 1.023513 AGGCTGCAGCTTCATTCGAC 61.024 55.000 35.82 17.24 41.70 4.20
102 103 0.321919 AAGGCTGCAGCTTCATTCGA 60.322 50.000 35.82 0.00 41.70 3.71
103 104 1.372582 TAAGGCTGCAGCTTCATTCG 58.627 50.000 35.82 0.00 41.70 3.34
104 105 4.382345 AAATAAGGCTGCAGCTTCATTC 57.618 40.909 35.82 19.44 41.70 2.67
105 106 4.706476 TGTAAATAAGGCTGCAGCTTCATT 59.294 37.500 35.82 24.91 41.70 2.57
106 107 4.272489 TGTAAATAAGGCTGCAGCTTCAT 58.728 39.130 35.82 20.14 41.70 2.57
107 108 3.684908 TGTAAATAAGGCTGCAGCTTCA 58.315 40.909 35.82 18.50 41.70 3.02
108 109 3.941483 TCTGTAAATAAGGCTGCAGCTTC 59.059 43.478 35.82 21.67 41.70 3.86
109 110 3.955471 TCTGTAAATAAGGCTGCAGCTT 58.045 40.909 35.82 28.28 41.70 3.74
110 111 3.634397 TCTGTAAATAAGGCTGCAGCT 57.366 42.857 35.82 21.35 41.70 4.24
111 112 4.604976 CATTCTGTAAATAAGGCTGCAGC 58.395 43.478 30.88 30.88 41.14 5.25
112 113 4.096833 TGCATTCTGTAAATAAGGCTGCAG 59.903 41.667 10.11 10.11 33.75 4.41
113 114 4.015764 TGCATTCTGTAAATAAGGCTGCA 58.984 39.130 0.50 0.00 33.75 4.41
114 115 4.637483 TGCATTCTGTAAATAAGGCTGC 57.363 40.909 0.00 0.00 33.75 5.25
115 116 7.734924 TCTATGCATTCTGTAAATAAGGCTG 57.265 36.000 3.54 0.00 33.75 4.85
123 124 9.625747 TGAACCAATATCTATGCATTCTGTAAA 57.374 29.630 3.54 0.00 0.00 2.01
124 125 9.797642 ATGAACCAATATCTATGCATTCTGTAA 57.202 29.630 3.54 0.00 0.00 2.41
125 126 9.440773 GATGAACCAATATCTATGCATTCTGTA 57.559 33.333 3.54 0.00 0.00 2.74
126 127 8.162085 AGATGAACCAATATCTATGCATTCTGT 58.838 33.333 3.54 0.00 32.13 3.41
127 128 8.563123 AGATGAACCAATATCTATGCATTCTG 57.437 34.615 3.54 0.00 32.13 3.02
153 154 8.619546 GCAGTGCTTAAAGATGATCTTTCTAAT 58.380 33.333 22.47 2.76 42.60 1.73
154 155 7.826252 AGCAGTGCTTAAAGATGATCTTTCTAA 59.174 33.333 22.47 12.24 44.79 2.10
155 156 7.334090 AGCAGTGCTTAAAGATGATCTTTCTA 58.666 34.615 22.47 11.90 44.79 2.10
156 157 6.179040 AGCAGTGCTTAAAGATGATCTTTCT 58.821 36.000 22.47 11.21 44.79 2.52
157 158 6.434018 AGCAGTGCTTAAAGATGATCTTTC 57.566 37.500 22.47 10.33 44.79 2.62
172 173 2.680312 ACATGATCGTAAGCAGTGCT 57.320 45.000 13.14 13.14 42.56 4.40
173 174 6.525121 TTATTACATGATCGTAAGCAGTGC 57.475 37.500 7.13 7.13 34.95 4.40
174 175 7.011773 GCATTATTACATGATCGTAAGCAGTG 58.988 38.462 0.00 0.00 34.95 3.66
175 176 6.705825 TGCATTATTACATGATCGTAAGCAGT 59.294 34.615 0.00 0.00 34.95 4.40
176 177 7.120789 TGCATTATTACATGATCGTAAGCAG 57.879 36.000 0.00 0.00 34.95 4.24
177 178 6.347644 GCTGCATTATTACATGATCGTAAGCA 60.348 38.462 0.00 1.31 34.95 3.91
178 179 6.017933 GCTGCATTATTACATGATCGTAAGC 58.982 40.000 0.00 0.00 34.95 3.09
179 180 6.236357 CGCTGCATTATTACATGATCGTAAG 58.764 40.000 0.00 0.00 34.95 2.34
180 181 5.389411 GCGCTGCATTATTACATGATCGTAA 60.389 40.000 0.00 0.00 35.89 3.18
181 182 4.091365 GCGCTGCATTATTACATGATCGTA 59.909 41.667 0.00 0.00 0.00 3.43
182 183 3.120546 GCGCTGCATTATTACATGATCGT 60.121 43.478 0.00 0.00 0.00 3.73
183 184 3.120580 TGCGCTGCATTATTACATGATCG 60.121 43.478 9.73 0.00 31.71 3.69
184 185 4.408993 TGCGCTGCATTATTACATGATC 57.591 40.909 9.73 0.00 31.71 2.92
203 204 7.253917 CGATAACTATGATTAGCTAGCACATGC 60.254 40.741 18.83 2.59 42.49 4.06
204 205 7.757173 ACGATAACTATGATTAGCTAGCACATG 59.243 37.037 18.83 12.45 0.00 3.21
205 206 7.831753 ACGATAACTATGATTAGCTAGCACAT 58.168 34.615 18.83 17.25 0.00 3.21
206 207 7.215719 ACGATAACTATGATTAGCTAGCACA 57.784 36.000 18.83 11.50 0.00 4.57
207 208 9.790389 ATTACGATAACTATGATTAGCTAGCAC 57.210 33.333 18.83 5.92 0.00 4.40
241 242 1.877443 GCTCGTCCAACCAGCTAAAAA 59.123 47.619 0.00 0.00 0.00 1.94
242 243 1.519408 GCTCGTCCAACCAGCTAAAA 58.481 50.000 0.00 0.00 0.00 1.52
243 244 0.321298 GGCTCGTCCAACCAGCTAAA 60.321 55.000 0.00 0.00 33.38 1.85
244 245 1.192146 AGGCTCGTCCAACCAGCTAA 61.192 55.000 0.00 0.00 37.29 3.09
245 246 1.605058 GAGGCTCGTCCAACCAGCTA 61.605 60.000 0.00 0.00 37.29 3.32
246 247 2.925170 AGGCTCGTCCAACCAGCT 60.925 61.111 0.00 0.00 37.29 4.24
247 248 2.435059 GAGGCTCGTCCAACCAGC 60.435 66.667 0.00 0.00 37.29 4.85
248 249 1.216710 GAGAGGCTCGTCCAACCAG 59.783 63.158 9.22 0.00 37.29 4.00
249 250 3.377656 GAGAGGCTCGTCCAACCA 58.622 61.111 9.22 0.00 37.29 3.67
258 259 3.525537 TCATCAACAAATCGAGAGGCTC 58.474 45.455 6.34 6.34 0.00 4.70
259 260 3.529533 CTCATCAACAAATCGAGAGGCT 58.470 45.455 0.00 0.00 0.00 4.58
260 261 2.611292 CCTCATCAACAAATCGAGAGGC 59.389 50.000 0.00 0.00 35.30 4.70
261 262 3.118629 TCCCTCATCAACAAATCGAGAGG 60.119 47.826 4.94 4.94 40.58 3.69
262 263 4.128925 TCCCTCATCAACAAATCGAGAG 57.871 45.455 0.00 0.00 0.00 3.20
263 264 4.020218 AGTTCCCTCATCAACAAATCGAGA 60.020 41.667 0.00 0.00 0.00 4.04
264 265 4.256920 AGTTCCCTCATCAACAAATCGAG 58.743 43.478 0.00 0.00 0.00 4.04
265 266 4.253685 GAGTTCCCTCATCAACAAATCGA 58.746 43.478 0.00 0.00 37.67 3.59
266 267 3.062639 CGAGTTCCCTCATCAACAAATCG 59.937 47.826 0.00 0.00 37.59 3.34
267 268 4.003648 ACGAGTTCCCTCATCAACAAATC 58.996 43.478 0.00 0.00 37.59 2.17
268 269 3.753272 CACGAGTTCCCTCATCAACAAAT 59.247 43.478 0.00 0.00 37.59 2.32
269 270 3.138304 CACGAGTTCCCTCATCAACAAA 58.862 45.455 0.00 0.00 37.59 2.83
270 271 2.549992 CCACGAGTTCCCTCATCAACAA 60.550 50.000 0.00 0.00 37.59 2.83
271 272 1.001974 CCACGAGTTCCCTCATCAACA 59.998 52.381 0.00 0.00 37.59 3.33
272 273 1.275291 TCCACGAGTTCCCTCATCAAC 59.725 52.381 0.00 0.00 37.59 3.18
273 274 1.639722 TCCACGAGTTCCCTCATCAA 58.360 50.000 0.00 0.00 37.59 2.57
274 275 1.482182 CATCCACGAGTTCCCTCATCA 59.518 52.381 0.00 0.00 37.59 3.07
275 276 1.757118 TCATCCACGAGTTCCCTCATC 59.243 52.381 0.00 0.00 37.59 2.92
276 277 1.866015 TCATCCACGAGTTCCCTCAT 58.134 50.000 0.00 0.00 37.59 2.90
277 278 1.482182 CATCATCCACGAGTTCCCTCA 59.518 52.381 0.00 0.00 37.59 3.86
278 279 1.482593 ACATCATCCACGAGTTCCCTC 59.517 52.381 0.00 0.00 0.00 4.30
279 280 1.573108 ACATCATCCACGAGTTCCCT 58.427 50.000 0.00 0.00 0.00 4.20
280 281 3.195661 GTTACATCATCCACGAGTTCCC 58.804 50.000 0.00 0.00 0.00 3.97
281 282 3.195661 GGTTACATCATCCACGAGTTCC 58.804 50.000 0.00 0.00 0.00 3.62
282 283 2.858344 CGGTTACATCATCCACGAGTTC 59.142 50.000 0.00 0.00 0.00 3.01
283 284 2.232941 ACGGTTACATCATCCACGAGTT 59.767 45.455 0.00 0.00 0.00 3.01
284 285 1.822990 ACGGTTACATCATCCACGAGT 59.177 47.619 0.00 0.00 0.00 4.18
285 286 2.193447 CACGGTTACATCATCCACGAG 58.807 52.381 0.00 0.00 0.00 4.18
286 287 1.546923 ACACGGTTACATCATCCACGA 59.453 47.619 0.00 0.00 0.00 4.35
287 288 2.004583 ACACGGTTACATCATCCACG 57.995 50.000 0.00 0.00 0.00 4.94
288 289 4.759516 AAAACACGGTTACATCATCCAC 57.240 40.909 0.00 0.00 0.00 4.02
289 290 7.175119 TGAATTAAAACACGGTTACATCATCCA 59.825 33.333 0.00 0.00 0.00 3.41
290 291 7.531716 TGAATTAAAACACGGTTACATCATCC 58.468 34.615 0.00 0.00 0.00 3.51
291 292 8.958175 TTGAATTAAAACACGGTTACATCATC 57.042 30.769 0.00 0.00 0.00 2.92
293 294 9.828852 GTATTGAATTAAAACACGGTTACATCA 57.171 29.630 0.00 0.00 0.00 3.07
294 295 9.828852 TGTATTGAATTAAAACACGGTTACATC 57.171 29.630 0.00 0.00 0.00 3.06
295 296 9.834628 CTGTATTGAATTAAAACACGGTTACAT 57.165 29.630 0.00 0.00 0.00 2.29
296 297 7.804129 GCTGTATTGAATTAAAACACGGTTACA 59.196 33.333 0.00 0.00 0.00 2.41
297 298 8.019094 AGCTGTATTGAATTAAAACACGGTTAC 58.981 33.333 0.00 0.00 0.00 2.50
298 299 8.101654 AGCTGTATTGAATTAAAACACGGTTA 57.898 30.769 0.00 0.00 0.00 2.85
299 300 6.977213 AGCTGTATTGAATTAAAACACGGTT 58.023 32.000 0.00 0.00 0.00 4.44
300 301 6.569179 AGCTGTATTGAATTAAAACACGGT 57.431 33.333 0.00 0.00 0.00 4.83
301 302 6.687105 GCTAGCTGTATTGAATTAAAACACGG 59.313 38.462 7.70 0.00 0.00 4.94
302 303 6.687105 GGCTAGCTGTATTGAATTAAAACACG 59.313 38.462 15.72 0.00 0.00 4.49
303 304 7.535139 TGGCTAGCTGTATTGAATTAAAACAC 58.465 34.615 15.72 0.00 0.00 3.32
304 305 7.695480 TGGCTAGCTGTATTGAATTAAAACA 57.305 32.000 15.72 0.00 0.00 2.83
305 306 8.405531 TCATGGCTAGCTGTATTGAATTAAAAC 58.594 33.333 15.72 0.00 0.00 2.43
306 307 8.518430 TCATGGCTAGCTGTATTGAATTAAAA 57.482 30.769 15.72 0.00 0.00 1.52
307 308 8.518430 TTCATGGCTAGCTGTATTGAATTAAA 57.482 30.769 15.72 0.00 0.00 1.52
308 309 7.992608 TCTTCATGGCTAGCTGTATTGAATTAA 59.007 33.333 15.72 3.96 0.00 1.40
309 310 7.442364 GTCTTCATGGCTAGCTGTATTGAATTA 59.558 37.037 15.72 5.93 0.00 1.40
310 311 6.261826 GTCTTCATGGCTAGCTGTATTGAATT 59.738 38.462 15.72 0.00 0.00 2.17
311 312 5.762218 GTCTTCATGGCTAGCTGTATTGAAT 59.238 40.000 15.72 0.00 0.00 2.57
312 313 5.118990 GTCTTCATGGCTAGCTGTATTGAA 58.881 41.667 15.72 14.28 0.00 2.69
313 314 4.443457 GGTCTTCATGGCTAGCTGTATTGA 60.443 45.833 15.72 7.93 0.00 2.57
314 315 3.812053 GGTCTTCATGGCTAGCTGTATTG 59.188 47.826 15.72 5.72 0.00 1.90
315 316 3.713764 AGGTCTTCATGGCTAGCTGTATT 59.286 43.478 15.72 0.00 0.00 1.89
316 317 3.312890 AGGTCTTCATGGCTAGCTGTAT 58.687 45.455 15.72 4.31 0.00 2.29
317 318 2.695666 GAGGTCTTCATGGCTAGCTGTA 59.304 50.000 15.72 1.83 0.00 2.74
318 319 1.484240 GAGGTCTTCATGGCTAGCTGT 59.516 52.381 15.72 0.09 0.00 4.40
319 320 1.761784 AGAGGTCTTCATGGCTAGCTG 59.238 52.381 15.72 6.12 0.00 4.24
320 321 2.173126 AGAGGTCTTCATGGCTAGCT 57.827 50.000 15.72 0.00 0.00 3.32
321 322 2.998316 AAGAGGTCTTCATGGCTAGC 57.002 50.000 6.04 6.04 0.00 3.42
365 366 7.653647 ACTTAGAATTGGTGTATTCGCAAAAA 58.346 30.769 0.00 0.00 39.09 1.94
366 367 7.209471 ACTTAGAATTGGTGTATTCGCAAAA 57.791 32.000 0.00 0.00 39.09 2.44
367 368 6.811253 ACTTAGAATTGGTGTATTCGCAAA 57.189 33.333 0.00 0.00 39.09 3.68
368 369 7.101054 ACTACTTAGAATTGGTGTATTCGCAA 58.899 34.615 0.00 0.00 39.09 4.85
369 370 6.636705 ACTACTTAGAATTGGTGTATTCGCA 58.363 36.000 0.00 0.00 39.09 5.10
370 371 8.813643 ATACTACTTAGAATTGGTGTATTCGC 57.186 34.615 0.00 0.00 39.09 4.70
513 521 0.721718 GCTGTGATCGAGGGTTTTCG 59.278 55.000 0.00 0.00 41.79 3.46
556 564 2.288886 GGTTGGAGGACGATATGGCTAC 60.289 54.545 0.00 0.00 0.00 3.58
662 670 2.125552 CACCATCTTCGCTGCCGA 60.126 61.111 0.00 0.00 42.66 5.54
753 761 4.131088 GCGTCCCAGTCCCTCGAC 62.131 72.222 0.00 0.00 39.50 4.20
837 845 1.507174 GAGGAACCTGACGTCGGAG 59.493 63.158 26.01 17.15 0.00 4.63
840 848 1.154263 GTCGAGGAACCTGACGTCG 60.154 63.158 11.62 5.76 43.66 5.12
1161 1172 0.331616 TCTCCCTCTCCGTCATGTCA 59.668 55.000 0.00 0.00 0.00 3.58
1269 1280 0.909610 TCACCATCTCCACCACCTCC 60.910 60.000 0.00 0.00 0.00 4.30
1354 1365 2.357034 CACGAACCCCTCACCGTG 60.357 66.667 0.00 0.00 44.66 4.94
1358 1369 3.041940 CGCACACGAACCCCTCAC 61.042 66.667 0.00 0.00 43.93 3.51
1359 1370 4.980805 GCGCACACGAACCCCTCA 62.981 66.667 0.30 0.00 43.93 3.86
1401 1412 4.612412 AAAACCTCGCCGGCGTCA 62.612 61.111 44.16 28.13 40.74 4.35
1558 1569 7.956508 TGTTTGTTTGTTTCATGTAAGTACG 57.043 32.000 0.00 0.00 0.00 3.67
1564 1575 6.646653 TGCTGTTTGTTTGTTTGTTTCATGTA 59.353 30.769 0.00 0.00 0.00 2.29
1565 1576 5.468072 TGCTGTTTGTTTGTTTGTTTCATGT 59.532 32.000 0.00 0.00 0.00 3.21
1566 1577 5.924786 TGCTGTTTGTTTGTTTGTTTCATG 58.075 33.333 0.00 0.00 0.00 3.07
1568 1579 5.698089 TCATGCTGTTTGTTTGTTTGTTTCA 59.302 32.000 0.00 0.00 0.00 2.69
1569 1580 6.163159 TCATGCTGTTTGTTTGTTTGTTTC 57.837 33.333 0.00 0.00 0.00 2.78
1659 1684 7.556275 GGATCAGATGGTGTTTCTAAATTGGTA 59.444 37.037 0.00 0.00 0.00 3.25
1740 1766 6.931838 AGAAACACATCTTATCCGTCTGTAA 58.068 36.000 0.00 0.00 0.00 2.41
1741 1767 6.525578 AGAAACACATCTTATCCGTCTGTA 57.474 37.500 0.00 0.00 0.00 2.74
1747 1773 5.880054 ACCAAAGAAACACATCTTATCCG 57.120 39.130 0.00 0.00 38.69 4.18
1948 2371 2.554462 GTTCTTCAGAGCTTGTTTCCCC 59.446 50.000 0.00 0.00 0.00 4.81
2190 2613 4.283212 TGAACTTCCCCAGCAATTTTAAGG 59.717 41.667 0.00 0.00 0.00 2.69
2206 2629 6.925718 TGATGGACATCTCGATTATGAACTTC 59.074 38.462 12.97 11.89 38.60 3.01
2216 2639 4.211125 ACTACAGTGATGGACATCTCGAT 58.789 43.478 12.97 6.34 38.60 3.59
2219 2642 6.256757 GCTTAAACTACAGTGATGGACATCTC 59.743 42.308 12.97 9.57 38.60 2.75
2254 2677 7.013559 TCCATCAGATACAAATGCATAAGGTTG 59.986 37.037 0.00 3.16 0.00 3.77
2281 2705 2.224257 TGGATGCCTGAAACAAAAAGCC 60.224 45.455 0.00 0.00 0.00 4.35
2325 2749 0.593128 AGATGTTGCGGTGCTCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
2344 2768 0.904865 AGAGATCGGTTCAGGCCACA 60.905 55.000 5.01 0.00 0.00 4.17
2367 2791 2.498807 TGCTCGATGAGAAAGATCCG 57.501 50.000 0.00 0.00 0.00 4.18
2370 2794 3.529533 CAGGTTGCTCGATGAGAAAGAT 58.470 45.455 0.00 0.00 26.22 2.40
2413 2837 7.070322 TCACTGATCTTACAGAATCATCCATCA 59.930 37.037 0.00 0.00 40.63 3.07
2414 2838 7.440198 TCACTGATCTTACAGAATCATCCATC 58.560 38.462 0.00 0.00 40.63 3.51
2425 2849 6.479990 TGAAAACACACTCACTGATCTTACAG 59.520 38.462 0.00 0.00 42.78 2.74
2469 2893 5.355910 GTGACTGTCTCCAAAACTAACCAAA 59.644 40.000 9.51 0.00 0.00 3.28
2473 2897 5.007724 CCAAGTGACTGTCTCCAAAACTAAC 59.992 44.000 9.51 0.00 0.00 2.34
2477 2903 3.279434 ACCAAGTGACTGTCTCCAAAAC 58.721 45.455 9.51 0.00 0.00 2.43
2482 2908 1.141053 ACCAACCAAGTGACTGTCTCC 59.859 52.381 9.51 0.00 0.00 3.71
2485 2911 1.940613 GACACCAACCAAGTGACTGTC 59.059 52.381 0.00 0.00 38.63 3.51
2505 2931 3.950395 CCCTCCTAAGCAAAATTCCTCTG 59.050 47.826 0.00 0.00 0.00 3.35
2526 2952 4.511527 CAGATGTGTGGATATATGCCTCC 58.488 47.826 1.35 0.00 0.00 4.30
2591 3025 6.939132 AGCTTGAATGAAACATCATCCTAG 57.061 37.500 0.00 0.00 0.00 3.02
2931 3383 1.463444 GGAGGTACACAATTGACGTGC 59.537 52.381 13.59 11.74 37.93 5.34
2932 3384 3.040147 AGGAGGTACACAATTGACGTG 57.960 47.619 13.59 2.45 40.32 4.49
2961 3415 9.904198 TCATTTGAGTGTTCATGGAGATATAAA 57.096 29.630 0.00 0.00 32.27 1.40
2986 3440 7.500227 TGTGGATATGATTCATGAAAAGGAGTC 59.500 37.037 13.09 4.89 0.00 3.36
2988 3442 7.812690 TGTGGATATGATTCATGAAAAGGAG 57.187 36.000 13.09 0.00 0.00 3.69
3052 3506 1.278985 TGTGAGGTTCTGCGAATCCAT 59.721 47.619 0.00 0.00 0.00 3.41
3059 3513 0.236711 CTGCTTTGTGAGGTTCTGCG 59.763 55.000 0.00 0.00 0.00 5.18
3090 3544 1.227380 CTCCAGCACGAGGCCATAC 60.227 63.158 5.01 0.00 46.50 2.39
3219 3673 4.752879 AACGCCATCCGGTCCACG 62.753 66.667 0.00 4.65 42.52 4.94
3226 3680 0.248215 GCATGAAGAAACGCCATCCG 60.248 55.000 0.00 0.00 44.21 4.18
3243 3697 1.275421 TATCCCGGGTCACATTGGCA 61.275 55.000 22.86 0.00 0.00 4.92
3282 3736 1.478105 CATCTGTCACCGATGGTCTCA 59.522 52.381 1.29 0.00 35.71 3.27
3294 3748 1.911357 ACCTGGAAGATGCATCTGTCA 59.089 47.619 29.34 25.37 37.19 3.58
3382 3836 9.816787 TTATTTATGAAACTACCCCTTGAAAGT 57.183 29.630 0.00 0.00 0.00 2.66
3458 3913 1.292061 CCAAAACCTGACGACGAACA 58.708 50.000 0.00 0.30 0.00 3.18
3463 3918 1.305201 TCTTGCCAAAACCTGACGAC 58.695 50.000 0.00 0.00 0.00 4.34
3472 3927 4.405116 ACTGCATTTCTTCTTGCCAAAA 57.595 36.364 0.00 0.00 38.08 2.44
3527 3985 7.064229 ACCTGGATTTTACTCCTACAAAACAA 58.936 34.615 0.00 0.00 36.20 2.83
3532 3990 6.043938 ACTGAACCTGGATTTTACTCCTACAA 59.956 38.462 0.00 0.00 36.20 2.41
3555 4013 7.393515 GGTTCACCATTGGAGAACTTATTTACT 59.606 37.037 31.67 0.00 46.98 2.24
3590 4052 1.112916 TCCACCTGCGACACAAGAGA 61.113 55.000 0.00 0.00 0.00 3.10
3790 4252 3.151022 GAGTGAGGCCCTCCGAGG 61.151 72.222 8.62 7.56 37.47 4.63
3862 4326 4.277515 ACAGAAACAGATTCAGCAGCTA 57.722 40.909 0.00 0.00 40.72 3.32
3993 4460 0.167908 CATGCTCGGCAAAAGCGTAA 59.832 50.000 2.68 0.00 43.62 3.18
4211 4678 2.422165 TGGTACAGTTGCGCGGAA 59.578 55.556 9.68 9.68 0.00 4.30
4222 4689 1.285280 ATGTGGCCTAAGCTGGTACA 58.715 50.000 3.32 0.00 39.73 2.90
4224 4691 4.228010 TGTATATGTGGCCTAAGCTGGTA 58.772 43.478 3.32 0.00 39.73 3.25
4225 4692 3.045634 TGTATATGTGGCCTAAGCTGGT 58.954 45.455 3.32 0.00 39.73 4.00
4232 4700 7.439955 CACGTTAGAAAATGTATATGTGGCCTA 59.560 37.037 3.32 0.00 32.96 3.93
4252 4722 6.255237 TGAATGTCGAAACAAAGTACACGTTA 59.745 34.615 0.00 0.00 39.30 3.18
4266 4736 4.553156 GCTAACAAACGGTGAATGTCGAAA 60.553 41.667 0.00 0.00 0.00 3.46
4270 4740 3.810373 CAGCTAACAAACGGTGAATGTC 58.190 45.455 0.00 0.00 0.00 3.06
4304 4774 1.202746 TGGAATGTACAGTGCAGTGCA 60.203 47.619 21.57 15.37 38.46 4.57
4305 4775 1.522668 TGGAATGTACAGTGCAGTGC 58.477 50.000 21.57 8.58 0.00 4.40
4306 4776 3.752412 CATGGAATGTACAGTGCAGTG 57.248 47.619 21.67 20.11 40.20 3.66
4435 4911 4.394920 TGAAAAGTTCACAACAGTGTCTCC 59.605 41.667 0.00 0.00 35.07 3.71
4442 4918 4.349663 TCCGTTGAAAAGTTCACAACAG 57.650 40.909 18.42 11.36 42.37 3.16
4671 5148 6.701340 ACGCCATCTGAATTATCTGCTTATA 58.299 36.000 0.00 0.00 0.00 0.98
4672 5149 5.555017 ACGCCATCTGAATTATCTGCTTAT 58.445 37.500 0.00 0.00 0.00 1.73
4692 5169 0.822164 TCCCTAGAGCTGGTTAACGC 59.178 55.000 0.00 0.00 0.00 4.84
4719 5197 3.134262 TCTCAGATTCTGGCTTGATCAGG 59.866 47.826 13.59 0.00 33.36 3.86
4861 5352 7.761409 TCAAGAGCCATTTATGTTCATGTTAC 58.239 34.615 0.00 0.00 0.00 2.50
4862 5353 7.828717 TCTCAAGAGCCATTTATGTTCATGTTA 59.171 33.333 0.00 0.00 0.00 2.41
4863 5354 6.660521 TCTCAAGAGCCATTTATGTTCATGTT 59.339 34.615 0.00 0.00 0.00 2.71
4877 5368 2.968574 AGTGAAGAAGTCTCAAGAGCCA 59.031 45.455 0.00 0.00 0.00 4.75
4900 5391 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
4901 5392 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
4902 5393 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
4903 5394 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4904 5395 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4907 5398 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4908 5399 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4909 5400 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4910 5401 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4911 5402 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4912 5403 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4913 5404 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4914 5405 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4915 5406 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4916 5407 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4917 5408 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4918 5409 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4919 5410 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4920 5411 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4921 5412 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4922 5413 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4923 5414 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4924 5415 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4925 5416 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4926 5417 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
4927 5418 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
4928 5419 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
4929 5420 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
4930 5421 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
4931 5422 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
4932 5423 1.481363 CTTTTCTACTCCCTCCGTCCC 59.519 57.143 0.00 0.00 0.00 4.46
4933 5424 2.454538 TCTTTTCTACTCCCTCCGTCC 58.545 52.381 0.00 0.00 0.00 4.79
4934 5425 4.244066 GTTTCTTTTCTACTCCCTCCGTC 58.756 47.826 0.00 0.00 0.00 4.79
4935 5426 3.305881 CGTTTCTTTTCTACTCCCTCCGT 60.306 47.826 0.00 0.00 0.00 4.69
4936 5427 3.251571 CGTTTCTTTTCTACTCCCTCCG 58.748 50.000 0.00 0.00 0.00 4.63
4937 5428 4.244066 GACGTTTCTTTTCTACTCCCTCC 58.756 47.826 0.00 0.00 0.00 4.30
4938 5429 4.879598 TGACGTTTCTTTTCTACTCCCTC 58.120 43.478 0.00 0.00 0.00 4.30
4939 5430 4.950205 TGACGTTTCTTTTCTACTCCCT 57.050 40.909 0.00 0.00 0.00 4.20
4940 5431 4.084693 CGTTGACGTTTCTTTTCTACTCCC 60.085 45.833 0.00 0.00 34.11 4.30
4941 5432 5.003061 CGTTGACGTTTCTTTTCTACTCC 57.997 43.478 0.00 0.00 34.11 3.85
4962 5453 0.389948 AGAGGCCGCTTGTCTAAACG 60.390 55.000 1.77 0.00 0.00 3.60
5060 5558 4.938226 GCTGCACCTGTTCTAAGAGTTTAT 59.062 41.667 0.00 0.00 0.00 1.40
5090 5588 8.526667 ACAGAGAGTACTTTATCTTGCAGATA 57.473 34.615 0.00 0.00 36.20 1.98
5106 5604 3.255888 CAGTGCACAAGGTACAGAGAGTA 59.744 47.826 21.04 0.00 34.11 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.