Multiple sequence alignment - TraesCS4D01G118700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G118700 chr4D 100.000 3566 0 0 1 3566 100198529 100202094 0.000000e+00 6586.0
1 TraesCS4D01G118700 chr4D 85.906 149 19 2 3266 3413 154798263 154798116 1.330000e-34 158.0
2 TraesCS4D01G118700 chr4A 95.772 2247 65 5 922 3144 476346734 476344494 0.000000e+00 3596.0
3 TraesCS4D01G118700 chr4A 98.667 75 1 0 3180 3254 476344315 476344241 2.230000e-27 134.0
4 TraesCS4D01G118700 chr4B 95.384 1668 53 12 908 2553 142430869 142432534 0.000000e+00 2632.0
5 TraesCS4D01G118700 chr4B 88.218 348 18 6 2608 2952 142432536 142432863 9.280000e-106 394.0
6 TraesCS4D01G118700 chr4B 97.333 75 2 0 3180 3254 142433040 142433114 1.040000e-25 128.0
7 TraesCS4D01G118700 chr4B 88.158 76 4 2 3491 3566 458893801 458893871 6.340000e-13 86.1
8 TraesCS4D01G118700 chr7B 89.030 866 84 7 4 861 211448206 211447344 0.000000e+00 1062.0
9 TraesCS4D01G118700 chr2D 92.271 621 40 4 1 613 118522370 118521750 0.000000e+00 874.0
10 TraesCS4D01G118700 chr2D 88.333 300 27 4 577 876 118521705 118521414 1.570000e-93 353.0
11 TraesCS4D01G118700 chr7A 93.281 506 32 2 1 504 726844466 726843961 0.000000e+00 745.0
12 TraesCS4D01G118700 chr7A 89.323 384 37 2 495 876 726843922 726843541 2.490000e-131 479.0
13 TraesCS4D01G118700 chr1D 90.096 313 21 3 3255 3566 464871152 464870849 7.170000e-107 398.0
14 TraesCS4D01G118700 chr1B 91.824 159 12 1 3253 3410 174974019 174974177 1.670000e-53 220.0
15 TraesCS4D01G118700 chr1B 80.198 202 32 6 411 607 599328898 599328700 1.030000e-30 145.0
16 TraesCS4D01G118700 chr1B 100.000 28 0 0 883 910 119107622 119107595 6.000000e-03 52.8
17 TraesCS4D01G118700 chr5D 86.585 164 21 1 3251 3413 133339764 133339927 2.830000e-41 180.0
18 TraesCS4D01G118700 chr5D 89.423 104 11 0 3260 3363 408477525 408477422 8.030000e-27 132.0
19 TraesCS4D01G118700 chr6A 86.228 167 18 5 3250 3413 17637324 17637488 3.660000e-40 176.0
20 TraesCS4D01G118700 chr6A 79.191 173 34 2 678 849 94285180 94285351 6.250000e-23 119.0
21 TraesCS4D01G118700 chr5B 85.714 161 23 0 3251 3411 144797307 144797467 1.700000e-38 171.0
22 TraesCS4D01G118700 chr5B 82.812 192 26 2 688 872 473507188 473507379 7.920000e-37 165.0
23 TraesCS4D01G118700 chr5B 92.793 111 8 0 3253 3363 490046764 490046654 1.020000e-35 161.0
24 TraesCS4D01G118700 chr5A 90.090 111 11 0 3253 3363 514400411 514400301 1.030000e-30 145.0
25 TraesCS4D01G118700 chr1A 80.214 187 35 2 691 876 583869855 583870040 4.800000e-29 139.0
26 TraesCS4D01G118700 chrUn 81.560 141 23 3 737 876 67142104 67142242 2.910000e-21 113.0
27 TraesCS4D01G118700 chr7D 77.654 179 35 5 689 865 595918387 595918562 1.750000e-18 104.0
28 TraesCS4D01G118700 chr6B 77.654 179 35 5 689 865 696001227 696001052 1.750000e-18 104.0
29 TraesCS4D01G118700 chr6B 100.000 29 0 0 883 911 696000799 696000771 2.000000e-03 54.7
30 TraesCS4D01G118700 chr2A 100.000 29 0 0 883 911 11012521 11012493 2.000000e-03 54.7
31 TraesCS4D01G118700 chr2A 100.000 29 0 0 883 911 11012645 11012617 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G118700 chr4D 100198529 100202094 3565 False 6586.000000 6586 100.0000 1 3566 1 chr4D.!!$F1 3565
1 TraesCS4D01G118700 chr4A 476344241 476346734 2493 True 1865.000000 3596 97.2195 922 3254 2 chr4A.!!$R1 2332
2 TraesCS4D01G118700 chr4B 142430869 142433114 2245 False 1051.333333 2632 93.6450 908 3254 3 chr4B.!!$F2 2346
3 TraesCS4D01G118700 chr7B 211447344 211448206 862 True 1062.000000 1062 89.0300 4 861 1 chr7B.!!$R1 857
4 TraesCS4D01G118700 chr2D 118521414 118522370 956 True 613.500000 874 90.3020 1 876 2 chr2D.!!$R1 875
5 TraesCS4D01G118700 chr7A 726843541 726844466 925 True 612.000000 745 91.3020 1 876 2 chr7A.!!$R1 875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 433 0.038166 GTGCTTCCTGTTCCCCATCA 59.962 55.0 0.0 0.0 0.00 3.07 F
860 990 0.096976 GATCGGTTGATGCGGTGTTG 59.903 55.0 0.0 0.0 34.09 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2140 0.028770 TTTCAAAGACTTGCGTGGCG 59.971 50.0 0.00 0.0 32.14 5.69 R
2749 2919 0.110192 GCTTAGAAGCGGCAACACAC 60.110 55.0 1.45 0.0 42.88 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.520847 TGCATGTACATGTGGTTGCG 59.479 50.000 31.10 9.10 40.80 4.85
44 45 5.670485 TGCGATTCCTGTAGTATTTCACAT 58.330 37.500 0.00 0.00 0.00 3.21
67 68 9.615660 ACATAAGATTATATTACCTCACCAGGA 57.384 33.333 0.00 0.00 43.65 3.86
158 159 0.744414 CAAGACGGGGCGATGACATT 60.744 55.000 0.00 0.00 0.00 2.71
160 161 2.124736 ACGGGGCGATGACATTGG 60.125 61.111 4.81 0.00 0.00 3.16
300 301 0.883153 TTAGTGTGACGGCGCTTCTA 59.117 50.000 6.90 3.23 0.00 2.10
429 430 2.843545 GGTGCTTCCTGTTCCCCA 59.156 61.111 0.00 0.00 0.00 4.96
430 431 1.384191 GGTGCTTCCTGTTCCCCAT 59.616 57.895 0.00 0.00 0.00 4.00
432 433 0.038166 GTGCTTCCTGTTCCCCATCA 59.962 55.000 0.00 0.00 0.00 3.07
658 788 4.583073 ACGTGGGATTAGGAATTATTTGCC 59.417 41.667 0.00 0.00 0.00 4.52
690 820 1.355971 TCGTAAGCGACCAGAATTGC 58.644 50.000 0.00 0.00 42.81 3.56
699 829 0.168788 ACCAGAATTGCGTGATTGCG 59.831 50.000 0.00 0.00 37.81 4.85
704 834 1.933115 AATTGCGTGATTGCGGGGAC 61.933 55.000 0.00 0.00 37.81 4.46
728 858 6.155737 ACGTGGGACTGGTAGTTAGAATATTT 59.844 38.462 0.00 0.00 0.00 1.40
732 862 7.070821 TGGGACTGGTAGTTAGAATATTTCTCC 59.929 40.741 0.00 0.00 41.14 3.71
733 863 7.146648 GGACTGGTAGTTAGAATATTTCTCCG 58.853 42.308 0.00 0.00 41.14 4.63
734 864 6.514063 ACTGGTAGTTAGAATATTTCTCCGC 58.486 40.000 0.00 0.00 41.14 5.54
757 887 2.028385 GGTGGAGTACGGTCAGTCATTT 60.028 50.000 0.00 0.00 0.00 2.32
764 894 7.094975 TGGAGTACGGTCAGTCATTTAAAATTG 60.095 37.037 0.00 0.00 0.00 2.32
768 898 6.608610 ACGGTCAGTCATTTAAAATTGCTAC 58.391 36.000 0.00 0.00 0.00 3.58
771 901 6.741358 GGTCAGTCATTTAAAATTGCTACGTC 59.259 38.462 0.00 0.00 0.00 4.34
772 902 7.360946 GGTCAGTCATTTAAAATTGCTACGTCT 60.361 37.037 0.00 0.00 0.00 4.18
783 913 3.913548 TGCTACGTCTACACCGTAAAA 57.086 42.857 0.00 0.00 39.98 1.52
834 964 9.284594 GATTTAGATCTATGAGACTAATCGTGC 57.715 37.037 2.58 0.00 0.00 5.34
835 965 5.289917 AGATCTATGAGACTAATCGTGCG 57.710 43.478 0.00 0.00 0.00 5.34
836 966 3.898517 TCTATGAGACTAATCGTGCGG 57.101 47.619 0.00 0.00 0.00 5.69
837 967 3.211865 TCTATGAGACTAATCGTGCGGT 58.788 45.455 0.00 0.00 0.00 5.68
838 968 2.209838 ATGAGACTAATCGTGCGGTG 57.790 50.000 0.00 0.00 0.00 4.94
839 969 0.457853 TGAGACTAATCGTGCGGTGC 60.458 55.000 0.00 0.00 0.00 5.01
840 970 0.179134 GAGACTAATCGTGCGGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
841 971 0.458543 AGACTAATCGTGCGGTGCTG 60.459 55.000 0.00 0.00 0.00 4.41
842 972 0.457853 GACTAATCGTGCGGTGCTGA 60.458 55.000 0.00 0.00 0.00 4.26
843 973 0.175760 ACTAATCGTGCGGTGCTGAT 59.824 50.000 0.00 0.00 0.00 2.90
844 974 0.855349 CTAATCGTGCGGTGCTGATC 59.145 55.000 0.00 0.00 0.00 2.92
845 975 0.869880 TAATCGTGCGGTGCTGATCG 60.870 55.000 0.00 0.00 0.00 3.69
846 976 4.794439 TCGTGCGGTGCTGATCGG 62.794 66.667 0.00 0.00 0.00 4.18
848 978 2.742372 GTGCGGTGCTGATCGGTT 60.742 61.111 2.89 0.00 0.00 4.44
849 979 2.741985 TGCGGTGCTGATCGGTTG 60.742 61.111 2.89 0.00 0.00 3.77
850 980 2.434185 GCGGTGCTGATCGGTTGA 60.434 61.111 2.89 0.00 0.00 3.18
851 981 1.815421 GCGGTGCTGATCGGTTGAT 60.815 57.895 2.89 0.00 37.60 2.57
852 982 2.009108 CGGTGCTGATCGGTTGATG 58.991 57.895 2.89 0.00 34.09 3.07
853 983 1.723870 GGTGCTGATCGGTTGATGC 59.276 57.895 2.89 0.00 34.09 3.91
854 984 1.349627 GTGCTGATCGGTTGATGCG 59.650 57.895 2.89 0.00 34.09 4.73
855 985 1.815003 TGCTGATCGGTTGATGCGG 60.815 57.895 2.89 0.00 34.09 5.69
856 986 1.815421 GCTGATCGGTTGATGCGGT 60.815 57.895 2.89 0.00 34.09 5.68
857 987 2.009108 CTGATCGGTTGATGCGGTG 58.991 57.895 0.00 0.00 34.09 4.94
858 988 0.740868 CTGATCGGTTGATGCGGTGT 60.741 55.000 0.00 0.00 34.09 4.16
859 989 0.321210 TGATCGGTTGATGCGGTGTT 60.321 50.000 0.00 0.00 34.09 3.32
860 990 0.096976 GATCGGTTGATGCGGTGTTG 59.903 55.000 0.00 0.00 34.09 3.33
861 991 0.605319 ATCGGTTGATGCGGTGTTGT 60.605 50.000 0.00 0.00 32.21 3.32
862 992 1.082169 CGGTTGATGCGGTGTTGTG 60.082 57.895 0.00 0.00 0.00 3.33
863 993 1.285641 GGTTGATGCGGTGTTGTGG 59.714 57.895 0.00 0.00 0.00 4.17
864 994 1.285641 GTTGATGCGGTGTTGTGGG 59.714 57.895 0.00 0.00 0.00 4.61
865 995 2.560119 TTGATGCGGTGTTGTGGGC 61.560 57.895 0.00 0.00 0.00 5.36
866 996 3.747976 GATGCGGTGTTGTGGGCC 61.748 66.667 0.00 0.00 0.00 5.80
867 997 4.594854 ATGCGGTGTTGTGGGCCA 62.595 61.111 0.00 0.00 0.00 5.36
868 998 4.822628 TGCGGTGTTGTGGGCCAA 62.823 61.111 8.40 0.00 0.00 4.52
869 999 3.532155 GCGGTGTTGTGGGCCAAA 61.532 61.111 8.40 0.00 34.07 3.28
870 1000 2.866726 GCGGTGTTGTGGGCCAAAT 61.867 57.895 8.40 0.00 34.07 2.32
871 1001 1.745264 CGGTGTTGTGGGCCAAATT 59.255 52.632 8.40 0.00 34.07 1.82
872 1002 0.962489 CGGTGTTGTGGGCCAAATTA 59.038 50.000 8.40 0.00 34.07 1.40
873 1003 1.336424 CGGTGTTGTGGGCCAAATTAC 60.336 52.381 8.40 4.92 34.07 1.89
874 1004 1.336424 GGTGTTGTGGGCCAAATTACG 60.336 52.381 8.40 0.00 34.07 3.18
875 1005 0.962489 TGTTGTGGGCCAAATTACGG 59.038 50.000 8.40 0.00 34.07 4.02
876 1006 1.249407 GTTGTGGGCCAAATTACGGA 58.751 50.000 8.40 0.00 34.07 4.69
877 1007 1.614413 GTTGTGGGCCAAATTACGGAA 59.386 47.619 8.40 0.00 34.07 4.30
878 1008 2.223803 TGTGGGCCAAATTACGGAAT 57.776 45.000 8.40 0.00 0.00 3.01
879 1009 1.821753 TGTGGGCCAAATTACGGAATG 59.178 47.619 8.40 0.00 0.00 2.67
880 1010 0.820871 TGGGCCAAATTACGGAATGC 59.179 50.000 2.13 0.00 0.00 3.56
881 1011 1.111277 GGGCCAAATTACGGAATGCT 58.889 50.000 4.39 0.00 0.00 3.79
882 1012 2.303175 GGGCCAAATTACGGAATGCTA 58.697 47.619 4.39 0.00 0.00 3.49
883 1013 2.890945 GGGCCAAATTACGGAATGCTAT 59.109 45.455 4.39 0.00 0.00 2.97
884 1014 3.320826 GGGCCAAATTACGGAATGCTATT 59.679 43.478 4.39 0.00 0.00 1.73
885 1015 4.298332 GGCCAAATTACGGAATGCTATTG 58.702 43.478 0.00 0.00 0.00 1.90
886 1016 4.202111 GGCCAAATTACGGAATGCTATTGT 60.202 41.667 0.00 0.00 0.00 2.71
887 1017 5.348164 GCCAAATTACGGAATGCTATTGTT 58.652 37.500 0.00 0.00 0.00 2.83
888 1018 5.810074 GCCAAATTACGGAATGCTATTGTTT 59.190 36.000 0.00 0.00 0.00 2.83
889 1019 6.975772 GCCAAATTACGGAATGCTATTGTTTA 59.024 34.615 0.00 0.00 0.00 2.01
890 1020 7.489757 GCCAAATTACGGAATGCTATTGTTTAA 59.510 33.333 0.00 0.00 0.00 1.52
891 1021 9.528018 CCAAATTACGGAATGCTATTGTTTAAT 57.472 29.630 0.00 0.00 0.00 1.40
898 1028 9.042008 ACGGAATGCTATTGTTTAATAGTAGTG 57.958 33.333 8.37 0.00 44.92 2.74
899 1029 8.495949 CGGAATGCTATTGTTTAATAGTAGTGG 58.504 37.037 8.37 0.00 44.92 4.00
900 1030 9.555727 GGAATGCTATTGTTTAATAGTAGTGGA 57.444 33.333 8.37 0.00 44.92 4.02
904 1034 9.764363 TGCTATTGTTTAATAGTAGTGGAGATG 57.236 33.333 8.37 0.00 44.92 2.90
905 1035 9.209175 GCTATTGTTTAATAGTAGTGGAGATGG 57.791 37.037 8.37 0.00 44.92 3.51
908 1038 8.603898 TTGTTTAATAGTAGTGGAGATGGAGA 57.396 34.615 0.00 0.00 0.00 3.71
909 1039 8.783660 TGTTTAATAGTAGTGGAGATGGAGAT 57.216 34.615 0.00 0.00 0.00 2.75
910 1040 9.877222 TGTTTAATAGTAGTGGAGATGGAGATA 57.123 33.333 0.00 0.00 0.00 1.98
949 1079 1.299976 GACGAACTTCTGGGCCCAT 59.700 57.895 28.82 10.54 0.00 4.00
1176 1327 1.894756 CCTCGCCCTCCTACTCTCG 60.895 68.421 0.00 0.00 0.00 4.04
1184 1335 2.907917 CCTACTCTCGGCCCCTCG 60.908 72.222 0.00 0.00 0.00 4.63
1240 1391 2.439104 GCCGCATTCTCCTCCTCCT 61.439 63.158 0.00 0.00 0.00 3.69
1248 1399 2.044252 TCCTCCTCCTCCGTTCCG 60.044 66.667 0.00 0.00 0.00 4.30
1285 1436 0.969894 CTTCAACCACGTCTCCTCCT 59.030 55.000 0.00 0.00 0.00 3.69
1291 1442 1.324005 CCACGTCTCCTCCTTCTCCC 61.324 65.000 0.00 0.00 0.00 4.30
1410 1561 3.345028 AAGGGGCTGGAGCTGCAT 61.345 61.111 8.91 0.00 41.70 3.96
1431 1582 2.577059 CGCGTCCTAAAGCTGGGA 59.423 61.111 0.00 0.00 0.00 4.37
1695 1846 3.157252 ATGGAGGAGGCATCGCGT 61.157 61.111 5.77 0.00 0.00 6.01
1723 1874 1.346068 GTGAGATGCCTGATAGGGACC 59.654 57.143 0.00 0.00 39.03 4.46
1989 2140 2.134789 AATGTGGCAGATTGGACCTC 57.865 50.000 9.31 0.00 0.00 3.85
2226 2381 1.268352 GCCGACTACAAAATTGTGCCA 59.732 47.619 8.99 0.00 42.31 4.92
2268 2423 1.114627 TGATAGACATGCTCTGCCGT 58.885 50.000 7.74 0.00 0.00 5.68
2346 2502 1.980765 TCTGTGCTCTGGAAGATGGTT 59.019 47.619 0.00 0.00 45.62 3.67
2557 2713 3.247411 CGCACACAGTCAAGTTGATGTTA 59.753 43.478 9.18 0.00 0.00 2.41
2587 2744 7.600752 GCTAATATTTAGAGCGAAGAATGACCT 59.399 37.037 0.00 0.00 0.00 3.85
2589 2746 8.819643 AATATTTAGAGCGAAGAATGACCTAC 57.180 34.615 0.00 0.00 0.00 3.18
2649 2806 2.718107 GCCGCAGCTTCAATAGGC 59.282 61.111 0.00 0.00 37.61 3.93
2674 2831 4.700213 GCTTAGCATTCCTCCTTTGTTACA 59.300 41.667 0.00 0.00 0.00 2.41
2675 2832 5.358160 GCTTAGCATTCCTCCTTTGTTACAT 59.642 40.000 0.00 0.00 0.00 2.29
2676 2833 6.127619 GCTTAGCATTCCTCCTTTGTTACATT 60.128 38.462 0.00 0.00 0.00 2.71
2677 2834 7.067008 GCTTAGCATTCCTCCTTTGTTACATTA 59.933 37.037 0.00 0.00 0.00 1.90
2678 2835 6.759497 AGCATTCCTCCTTTGTTACATTAC 57.241 37.500 0.00 0.00 0.00 1.89
2725 2882 8.354426 TGTGATAATGTGCATATCTTCAATTGG 58.646 33.333 5.42 0.00 0.00 3.16
2749 2919 4.157289 AGCTTGATGTGATTTTGTAGGCTG 59.843 41.667 0.00 0.00 0.00 4.85
2750 2920 4.082571 GCTTGATGTGATTTTGTAGGCTGT 60.083 41.667 0.00 0.00 0.00 4.40
2751 2921 5.375417 TTGATGTGATTTTGTAGGCTGTG 57.625 39.130 0.00 0.00 0.00 3.66
2752 2922 4.397420 TGATGTGATTTTGTAGGCTGTGT 58.603 39.130 0.00 0.00 0.00 3.72
2753 2923 4.216042 TGATGTGATTTTGTAGGCTGTGTG 59.784 41.667 0.00 0.00 0.00 3.82
2754 2924 3.550820 TGTGATTTTGTAGGCTGTGTGT 58.449 40.909 0.00 0.00 0.00 3.72
2755 2925 3.951037 TGTGATTTTGTAGGCTGTGTGTT 59.049 39.130 0.00 0.00 0.00 3.32
2756 2926 4.202000 TGTGATTTTGTAGGCTGTGTGTTG 60.202 41.667 0.00 0.00 0.00 3.33
2757 2927 2.861462 TTTTGTAGGCTGTGTGTTGC 57.139 45.000 0.00 0.00 0.00 4.17
2809 2981 5.897050 AGAGAATCGTCAACTTAGACCATC 58.103 41.667 0.00 0.00 42.67 3.51
2817 2989 5.552178 GTCAACTTAGACCATCCTGAGTTT 58.448 41.667 0.00 0.00 39.85 2.66
2856 3028 6.567602 AAGCTGAGAGGACCTTGTTATTAT 57.432 37.500 0.00 0.00 0.00 1.28
2897 3069 0.463620 GATGGAGCACTGGAGACCTC 59.536 60.000 0.00 0.00 0.00 3.85
2904 3076 1.270358 GCACTGGAGACCTCGAAAAGT 60.270 52.381 0.00 0.00 0.00 2.66
2908 3080 5.238583 CACTGGAGACCTCGAAAAGTTTAT 58.761 41.667 0.00 0.00 0.00 1.40
3023 3195 5.116180 TCCATTTTTATAGCCTCACGTCAG 58.884 41.667 0.00 0.00 0.00 3.51
3055 3227 9.079833 CAAGATGTCACAAATGATATGGTTTTC 57.920 33.333 0.00 0.00 36.85 2.29
3148 3354 1.580437 GATACGCTACCGCTCCCTC 59.420 63.158 0.00 0.00 38.22 4.30
3149 3355 0.890090 GATACGCTACCGCTCCCTCT 60.890 60.000 0.00 0.00 38.22 3.69
3161 3367 5.281314 ACCGCTCCCTCTAATCCATAATAT 58.719 41.667 0.00 0.00 0.00 1.28
3162 3368 5.726793 ACCGCTCCCTCTAATCCATAATATT 59.273 40.000 0.00 0.00 0.00 1.28
3221 3536 1.076632 TGGCAACTTTTGTCCGGGT 60.077 52.632 0.00 0.00 33.37 5.28
3254 3569 2.040145 TGCTCTTCATCCAACCATGTCA 59.960 45.455 0.00 0.00 0.00 3.58
3255 3570 2.681848 GCTCTTCATCCAACCATGTCAG 59.318 50.000 0.00 0.00 0.00 3.51
3256 3571 3.276857 CTCTTCATCCAACCATGTCAGG 58.723 50.000 0.00 0.00 0.00 3.86
3257 3572 1.747355 CTTCATCCAACCATGTCAGGC 59.253 52.381 0.00 0.00 0.00 4.85
3258 3573 0.994247 TCATCCAACCATGTCAGGCT 59.006 50.000 0.00 0.00 0.00 4.58
3259 3574 1.100510 CATCCAACCATGTCAGGCTG 58.899 55.000 8.58 8.58 0.00 4.85
3260 3575 0.682209 ATCCAACCATGTCAGGCTGC 60.682 55.000 10.34 5.78 0.00 5.25
3261 3576 1.604308 CCAACCATGTCAGGCTGCA 60.604 57.895 10.34 11.78 0.00 4.41
3262 3577 1.592400 CCAACCATGTCAGGCTGCAG 61.592 60.000 10.11 10.11 0.00 4.41
3263 3578 1.303888 AACCATGTCAGGCTGCAGG 60.304 57.895 17.12 12.59 0.00 4.85
3264 3579 2.072874 AACCATGTCAGGCTGCAGGT 62.073 55.000 17.12 15.60 0.00 4.00
3265 3580 2.044555 CCATGTCAGGCTGCAGGTG 61.045 63.158 17.12 7.46 0.00 4.00
3266 3581 2.044555 CATGTCAGGCTGCAGGTGG 61.045 63.158 17.12 0.00 0.00 4.61
3267 3582 3.278072 ATGTCAGGCTGCAGGTGGG 62.278 63.158 17.12 0.00 0.00 4.61
3268 3583 3.640407 GTCAGGCTGCAGGTGGGA 61.640 66.667 17.12 0.00 0.00 4.37
3269 3584 3.324930 TCAGGCTGCAGGTGGGAG 61.325 66.667 17.12 0.00 38.13 4.30
3270 3585 3.644606 CAGGCTGCAGGTGGGAGT 61.645 66.667 17.12 0.00 37.27 3.85
3271 3586 3.644606 AGGCTGCAGGTGGGAGTG 61.645 66.667 17.12 0.00 37.27 3.51
3272 3587 4.729918 GGCTGCAGGTGGGAGTGG 62.730 72.222 17.12 0.00 37.27 4.00
3273 3588 3.640407 GCTGCAGGTGGGAGTGGA 61.640 66.667 17.12 0.00 37.27 4.02
3274 3589 2.976490 GCTGCAGGTGGGAGTGGAT 61.976 63.158 17.12 0.00 37.27 3.41
3275 3590 1.626356 GCTGCAGGTGGGAGTGGATA 61.626 60.000 17.12 0.00 37.27 2.59
3276 3591 0.911769 CTGCAGGTGGGAGTGGATAA 59.088 55.000 5.57 0.00 0.00 1.75
3277 3592 1.492176 CTGCAGGTGGGAGTGGATAAT 59.508 52.381 5.57 0.00 0.00 1.28
3278 3593 2.705658 CTGCAGGTGGGAGTGGATAATA 59.294 50.000 5.57 0.00 0.00 0.98
3279 3594 2.705658 TGCAGGTGGGAGTGGATAATAG 59.294 50.000 0.00 0.00 0.00 1.73
3280 3595 2.706190 GCAGGTGGGAGTGGATAATAGT 59.294 50.000 0.00 0.00 0.00 2.12
3281 3596 3.495100 GCAGGTGGGAGTGGATAATAGTG 60.495 52.174 0.00 0.00 0.00 2.74
3282 3597 3.071602 CAGGTGGGAGTGGATAATAGTGG 59.928 52.174 0.00 0.00 0.00 4.00
3283 3598 2.372172 GGTGGGAGTGGATAATAGTGGG 59.628 54.545 0.00 0.00 0.00 4.61
3284 3599 3.314693 GTGGGAGTGGATAATAGTGGGA 58.685 50.000 0.00 0.00 0.00 4.37
3285 3600 3.071167 GTGGGAGTGGATAATAGTGGGAC 59.929 52.174 0.00 0.00 0.00 4.46
3286 3601 3.051341 TGGGAGTGGATAATAGTGGGACT 60.051 47.826 0.00 0.00 0.00 3.85
3287 3602 4.171243 TGGGAGTGGATAATAGTGGGACTA 59.829 45.833 0.00 0.00 34.82 2.59
3288 3603 5.152934 GGGAGTGGATAATAGTGGGACTAA 58.847 45.833 0.00 0.00 33.89 2.24
3289 3604 5.011840 GGGAGTGGATAATAGTGGGACTAAC 59.988 48.000 0.00 0.00 33.89 2.34
3290 3605 5.839606 GGAGTGGATAATAGTGGGACTAACT 59.160 44.000 0.00 0.00 33.89 2.24
3291 3606 6.326843 GGAGTGGATAATAGTGGGACTAACTT 59.673 42.308 0.00 0.00 33.89 2.66
3292 3607 7.508296 GGAGTGGATAATAGTGGGACTAACTTA 59.492 40.741 0.00 0.00 33.89 2.24
3293 3608 8.480133 AGTGGATAATAGTGGGACTAACTTAG 57.520 38.462 0.00 0.00 33.89 2.18
3294 3609 7.015389 AGTGGATAATAGTGGGACTAACTTAGC 59.985 40.741 0.00 0.00 33.89 3.09
3295 3610 6.269307 TGGATAATAGTGGGACTAACTTAGCC 59.731 42.308 0.00 0.00 34.62 3.93
3296 3611 6.295745 GGATAATAGTGGGACTAACTTAGCCC 60.296 46.154 16.02 16.02 40.42 5.19
3297 3612 2.337359 AGTGGGACTAACTTAGCCCA 57.663 50.000 19.37 19.37 44.41 5.36
3298 3613 2.846950 AGTGGGACTAACTTAGCCCAT 58.153 47.619 23.18 14.64 46.41 4.00
3299 3614 2.772515 AGTGGGACTAACTTAGCCCATC 59.227 50.000 23.18 18.43 46.41 3.51
3300 3615 2.124411 TGGGACTAACTTAGCCCATCC 58.876 52.381 19.37 9.51 42.92 3.51
3301 3616 1.420514 GGGACTAACTTAGCCCATCCC 59.579 57.143 17.19 12.27 40.03 3.85
3302 3617 2.124411 GGACTAACTTAGCCCATCCCA 58.876 52.381 0.00 0.00 0.00 4.37
3303 3618 2.158798 GGACTAACTTAGCCCATCCCAC 60.159 54.545 0.00 0.00 0.00 4.61
3304 3619 2.772515 GACTAACTTAGCCCATCCCACT 59.227 50.000 0.00 0.00 0.00 4.00
3305 3620 3.190439 ACTAACTTAGCCCATCCCACTT 58.810 45.455 0.00 0.00 0.00 3.16
3306 3621 4.368067 ACTAACTTAGCCCATCCCACTTA 58.632 43.478 0.00 0.00 0.00 2.24
3307 3622 4.786454 ACTAACTTAGCCCATCCCACTTAA 59.214 41.667 0.00 0.00 0.00 1.85
3308 3623 4.668138 AACTTAGCCCATCCCACTTAAA 57.332 40.909 0.00 0.00 0.00 1.52
3309 3624 3.964411 ACTTAGCCCATCCCACTTAAAC 58.036 45.455 0.00 0.00 0.00 2.01
3310 3625 3.591977 ACTTAGCCCATCCCACTTAAACT 59.408 43.478 0.00 0.00 0.00 2.66
3311 3626 2.514458 AGCCCATCCCACTTAAACTG 57.486 50.000 0.00 0.00 0.00 3.16
3312 3627 1.710809 AGCCCATCCCACTTAAACTGT 59.289 47.619 0.00 0.00 0.00 3.55
3313 3628 2.110011 AGCCCATCCCACTTAAACTGTT 59.890 45.455 0.00 0.00 0.00 3.16
3314 3629 2.897326 GCCCATCCCACTTAAACTGTTT 59.103 45.455 10.98 10.98 0.00 2.83
3315 3630 4.083565 GCCCATCCCACTTAAACTGTTTA 58.916 43.478 8.84 8.84 0.00 2.01
3316 3631 4.157840 GCCCATCCCACTTAAACTGTTTAG 59.842 45.833 12.30 9.64 0.00 1.85
3317 3632 5.321927 CCCATCCCACTTAAACTGTTTAGT 58.678 41.667 12.30 10.17 39.32 2.24
3318 3633 5.183140 CCCATCCCACTTAAACTGTTTAGTG 59.817 44.000 22.22 22.22 37.19 2.74
3319 3634 5.183140 CCATCCCACTTAAACTGTTTAGTGG 59.817 44.000 30.18 30.18 40.35 4.00
3320 3635 5.633655 TCCCACTTAAACTGTTTAGTGGA 57.366 39.130 33.91 24.79 41.60 4.02
3321 3636 6.195600 TCCCACTTAAACTGTTTAGTGGAT 57.804 37.500 33.91 15.00 41.60 3.41
3322 3637 6.607019 TCCCACTTAAACTGTTTAGTGGATT 58.393 36.000 33.91 12.03 41.60 3.01
3323 3638 6.713450 TCCCACTTAAACTGTTTAGTGGATTC 59.287 38.462 33.91 0.00 41.60 2.52
3324 3639 6.072119 CCCACTTAAACTGTTTAGTGGATTCC 60.072 42.308 33.91 0.00 41.60 3.01
3325 3640 6.072119 CCACTTAAACTGTTTAGTGGATTCCC 60.072 42.308 31.64 0.00 41.60 3.97
3326 3641 6.488683 CACTTAAACTGTTTAGTGGATTCCCA 59.511 38.462 21.83 0.00 40.95 4.37
3327 3642 7.176690 CACTTAAACTGTTTAGTGGATTCCCAT 59.823 37.037 21.83 0.00 45.68 4.00
3328 3643 5.982890 AAACTGTTTAGTGGATTCCCATG 57.017 39.130 3.51 0.00 45.68 3.66
3329 3644 3.968265 ACTGTTTAGTGGATTCCCATGG 58.032 45.455 4.14 4.14 45.68 3.66
3330 3645 3.290710 CTGTTTAGTGGATTCCCATGGG 58.709 50.000 26.30 26.30 45.68 4.00
3331 3646 2.922955 TGTTTAGTGGATTCCCATGGGA 59.077 45.455 30.62 30.62 45.68 4.37
3332 3647 3.288092 GTTTAGTGGATTCCCATGGGAC 58.712 50.000 34.00 22.22 45.68 4.46
3333 3648 2.278657 TAGTGGATTCCCATGGGACA 57.721 50.000 34.00 24.47 45.68 4.02
3351 3666 6.471146 TGGGACATCACAAAATTTAAATGGG 58.529 36.000 0.39 0.00 0.00 4.00
3352 3667 5.353956 GGGACATCACAAAATTTAAATGGGC 59.646 40.000 0.39 0.00 0.00 5.36
3353 3668 6.172630 GGACATCACAAAATTTAAATGGGCT 58.827 36.000 0.39 0.00 0.00 5.19
3354 3669 7.327214 GGACATCACAAAATTTAAATGGGCTA 58.673 34.615 0.39 0.00 0.00 3.93
3355 3670 7.986889 GGACATCACAAAATTTAAATGGGCTAT 59.013 33.333 0.39 0.00 0.00 2.97
3356 3671 8.947055 ACATCACAAAATTTAAATGGGCTATC 57.053 30.769 0.39 0.00 0.00 2.08
3357 3672 7.986889 ACATCACAAAATTTAAATGGGCTATCC 59.013 33.333 0.39 0.00 0.00 2.59
3372 3687 5.665916 GGCTATCCCATTTAATCCATTGG 57.334 43.478 0.00 0.00 0.00 3.16
3382 3697 2.609299 TCCATTGGGACCTCGCCA 60.609 61.111 2.09 0.00 38.64 5.69
3383 3698 2.227757 TCCATTGGGACCTCGCCAA 61.228 57.895 2.09 0.00 38.64 4.52
3384 3699 1.304052 CCATTGGGACCTCGCCAAA 60.304 57.895 0.00 0.00 35.59 3.28
3385 3700 1.595093 CCATTGGGACCTCGCCAAAC 61.595 60.000 0.00 0.00 35.59 2.93
3386 3701 1.304134 ATTGGGACCTCGCCAAACC 60.304 57.895 0.00 0.00 32.61 3.27
3387 3702 2.781431 ATTGGGACCTCGCCAAACCC 62.781 60.000 0.00 0.00 40.79 4.11
3390 3705 4.699522 GACCTCGCCAAACCCGCT 62.700 66.667 0.00 0.00 0.00 5.52
3391 3706 4.265056 ACCTCGCCAAACCCGCTT 62.265 61.111 0.00 0.00 0.00 4.68
3392 3707 2.983592 CCTCGCCAAACCCGCTTT 60.984 61.111 0.00 0.00 0.00 3.51
3393 3708 2.255252 CTCGCCAAACCCGCTTTG 59.745 61.111 0.00 0.00 39.31 2.77
3394 3709 3.896863 CTCGCCAAACCCGCTTTGC 62.897 63.158 0.00 0.00 38.40 3.68
3397 3712 3.601685 CCAAACCCGCTTTGCCGT 61.602 61.111 0.00 0.00 38.40 5.68
3398 3713 2.050442 CAAACCCGCTTTGCCGTC 60.050 61.111 0.00 0.00 33.06 4.79
3399 3714 3.292159 AAACCCGCTTTGCCGTCC 61.292 61.111 0.00 0.00 0.00 4.79
3404 3719 4.038080 CGCTTTGCCGTCCCCAAC 62.038 66.667 0.00 0.00 0.00 3.77
3405 3720 2.909965 GCTTTGCCGTCCCCAACA 60.910 61.111 0.00 0.00 0.00 3.33
3406 3721 2.919494 GCTTTGCCGTCCCCAACAG 61.919 63.158 0.00 0.00 0.00 3.16
3407 3722 1.528309 CTTTGCCGTCCCCAACAGT 60.528 57.895 0.00 0.00 0.00 3.55
3408 3723 1.076632 TTTGCCGTCCCCAACAGTT 60.077 52.632 0.00 0.00 0.00 3.16
3409 3724 1.104577 TTTGCCGTCCCCAACAGTTC 61.105 55.000 0.00 0.00 0.00 3.01
3410 3725 1.990160 TTGCCGTCCCCAACAGTTCT 61.990 55.000 0.00 0.00 0.00 3.01
3411 3726 1.671379 GCCGTCCCCAACAGTTCTC 60.671 63.158 0.00 0.00 0.00 2.87
3412 3727 2.058675 CCGTCCCCAACAGTTCTCT 58.941 57.895 0.00 0.00 0.00 3.10
3413 3728 1.263356 CCGTCCCCAACAGTTCTCTA 58.737 55.000 0.00 0.00 0.00 2.43
3414 3729 1.067071 CCGTCCCCAACAGTTCTCTAC 60.067 57.143 0.00 0.00 0.00 2.59
3415 3730 1.067071 CGTCCCCAACAGTTCTCTACC 60.067 57.143 0.00 0.00 0.00 3.18
3416 3731 1.975680 GTCCCCAACAGTTCTCTACCA 59.024 52.381 0.00 0.00 0.00 3.25
3417 3732 2.572104 GTCCCCAACAGTTCTCTACCAT 59.428 50.000 0.00 0.00 0.00 3.55
3418 3733 2.571653 TCCCCAACAGTTCTCTACCATG 59.428 50.000 0.00 0.00 0.00 3.66
3419 3734 2.571653 CCCCAACAGTTCTCTACCATGA 59.428 50.000 0.00 0.00 0.00 3.07
3420 3735 3.200825 CCCCAACAGTTCTCTACCATGAT 59.799 47.826 0.00 0.00 0.00 2.45
3421 3736 4.446371 CCCAACAGTTCTCTACCATGATC 58.554 47.826 0.00 0.00 0.00 2.92
3422 3737 4.080919 CCCAACAGTTCTCTACCATGATCA 60.081 45.833 0.00 0.00 0.00 2.92
3423 3738 4.872691 CCAACAGTTCTCTACCATGATCAC 59.127 45.833 0.00 0.00 0.00 3.06
3424 3739 5.482006 CAACAGTTCTCTACCATGATCACA 58.518 41.667 0.00 0.00 0.00 3.58
3425 3740 5.078411 ACAGTTCTCTACCATGATCACAC 57.922 43.478 0.00 0.00 0.00 3.82
3426 3741 4.528206 ACAGTTCTCTACCATGATCACACA 59.472 41.667 0.00 0.00 0.00 3.72
3427 3742 5.188555 ACAGTTCTCTACCATGATCACACAT 59.811 40.000 0.00 0.00 0.00 3.21
3428 3743 5.752472 CAGTTCTCTACCATGATCACACATC 59.248 44.000 0.00 0.00 0.00 3.06
3429 3744 5.660417 AGTTCTCTACCATGATCACACATCT 59.340 40.000 0.00 0.00 0.00 2.90
3430 3745 5.526506 TCTCTACCATGATCACACATCTG 57.473 43.478 0.00 0.00 0.00 2.90
3431 3746 4.343239 TCTCTACCATGATCACACATCTGG 59.657 45.833 8.86 8.86 0.00 3.86
3432 3747 4.033009 TCTACCATGATCACACATCTGGT 58.967 43.478 17.99 17.99 33.32 4.00
3433 3748 5.208121 TCTACCATGATCACACATCTGGTA 58.792 41.667 18.24 18.24 31.86 3.25
3434 3749 4.142609 ACCATGATCACACATCTGGTAC 57.857 45.455 13.53 0.00 29.00 3.34
3435 3750 3.776969 ACCATGATCACACATCTGGTACT 59.223 43.478 13.53 0.00 29.00 2.73
3436 3751 4.225942 ACCATGATCACACATCTGGTACTT 59.774 41.667 13.53 0.00 29.00 2.24
3437 3752 4.813161 CCATGATCACACATCTGGTACTTC 59.187 45.833 0.00 0.00 0.00 3.01
3438 3753 4.110036 TGATCACACATCTGGTACTTCG 57.890 45.455 0.00 0.00 0.00 3.79
3439 3754 2.363788 TCACACATCTGGTACTTCGC 57.636 50.000 0.00 0.00 0.00 4.70
3440 3755 1.067142 TCACACATCTGGTACTTCGCC 60.067 52.381 0.00 0.00 0.00 5.54
3441 3756 0.108804 ACACATCTGGTACTTCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
3442 3757 0.806102 CACATCTGGTACTTCGCCGG 60.806 60.000 0.00 0.00 0.00 6.13
3443 3758 0.968901 ACATCTGGTACTTCGCCGGA 60.969 55.000 5.05 0.00 44.59 5.14
3444 3759 0.249073 CATCTGGTACTTCGCCGGAG 60.249 60.000 5.05 0.00 43.82 4.63
3445 3760 2.017559 ATCTGGTACTTCGCCGGAGC 62.018 60.000 5.05 0.00 43.82 4.70
3455 3770 3.030882 GCCGGAGCGCTAATCGAC 61.031 66.667 22.94 12.00 41.67 4.20
3456 3771 2.354773 CCGGAGCGCTAATCGACC 60.355 66.667 22.94 13.41 41.67 4.79
3457 3772 2.411701 CGGAGCGCTAATCGACCA 59.588 61.111 11.50 0.00 41.67 4.02
3458 3773 1.658717 CGGAGCGCTAATCGACCAG 60.659 63.158 11.50 0.00 41.67 4.00
3459 3774 1.300233 GGAGCGCTAATCGACCAGG 60.300 63.158 11.50 0.00 41.67 4.45
3460 3775 1.300233 GAGCGCTAATCGACCAGGG 60.300 63.158 11.50 7.56 41.67 4.45
3461 3776 1.735376 GAGCGCTAATCGACCAGGGA 61.735 60.000 11.50 0.00 41.67 4.20
3462 3777 1.300233 GCGCTAATCGACCAGGGAG 60.300 63.158 14.22 0.00 41.67 4.30
3463 3778 1.364171 CGCTAATCGACCAGGGAGG 59.636 63.158 6.36 0.00 45.67 4.30
3464 3779 1.069935 GCTAATCGACCAGGGAGGC 59.930 63.158 0.00 0.00 43.14 4.70
3465 3780 1.749033 CTAATCGACCAGGGAGGCC 59.251 63.158 0.00 0.00 43.14 5.19
3466 3781 1.759459 CTAATCGACCAGGGAGGCCC 61.759 65.000 0.00 0.00 45.90 5.80
3475 3790 3.460868 GGGAGGCCCGGCAAATTG 61.461 66.667 12.58 0.00 32.13 2.32
3476 3791 2.362375 GGAGGCCCGGCAAATTGA 60.362 61.111 12.58 0.00 0.00 2.57
3477 3792 2.710902 GGAGGCCCGGCAAATTGAC 61.711 63.158 12.58 0.00 0.00 3.18
3478 3793 2.679996 AGGCCCGGCAAATTGACC 60.680 61.111 12.58 0.00 0.00 4.02
3483 3798 3.061848 CGGCAAATTGACCGGCCT 61.062 61.111 16.97 0.00 45.74 5.19
3484 3799 2.885113 GGCAAATTGACCGGCCTC 59.115 61.111 0.00 0.00 43.09 4.70
3485 3800 1.976474 GGCAAATTGACCGGCCTCA 60.976 57.895 0.00 0.00 43.09 3.86
3486 3801 1.531739 GGCAAATTGACCGGCCTCAA 61.532 55.000 9.66 9.66 43.09 3.02
3487 3802 0.109132 GCAAATTGACCGGCCTCAAG 60.109 55.000 12.48 1.81 33.65 3.02
3488 3803 1.247567 CAAATTGACCGGCCTCAAGT 58.752 50.000 12.48 7.60 33.65 3.16
3489 3804 2.432444 CAAATTGACCGGCCTCAAGTA 58.568 47.619 12.48 0.00 33.65 2.24
3490 3805 2.109425 AATTGACCGGCCTCAAGTAC 57.891 50.000 12.48 0.00 33.65 2.73
3491 3806 0.108329 ATTGACCGGCCTCAAGTACG 60.108 55.000 12.48 0.00 33.65 3.67
3497 3812 3.782042 GCCTCAAGTACGGCGAAG 58.218 61.111 16.62 0.52 36.45 3.79
3498 3813 1.080025 GCCTCAAGTACGGCGAAGT 60.080 57.895 16.62 0.00 36.45 3.01
3499 3814 1.352156 GCCTCAAGTACGGCGAAGTG 61.352 60.000 16.62 6.08 36.45 3.16
3500 3815 1.352156 CCTCAAGTACGGCGAAGTGC 61.352 60.000 16.62 0.00 45.38 4.40
3501 3816 0.388649 CTCAAGTACGGCGAAGTGCT 60.389 55.000 16.62 0.00 45.43 4.40
3502 3817 0.032952 TCAAGTACGGCGAAGTGCTT 59.967 50.000 16.62 3.30 45.53 3.91
3503 3818 2.528797 AAGTACGGCGAAGTGCTTG 58.471 52.632 16.62 0.00 43.56 4.01
3504 3819 0.032952 AAGTACGGCGAAGTGCTTGA 59.967 50.000 16.62 0.00 43.56 3.02
3505 3820 0.246635 AGTACGGCGAAGTGCTTGAT 59.753 50.000 16.62 0.00 45.43 2.57
3506 3821 0.370273 GTACGGCGAAGTGCTTGATG 59.630 55.000 16.62 0.00 45.43 3.07
3507 3822 0.037697 TACGGCGAAGTGCTTGATGT 60.038 50.000 16.62 0.00 45.43 3.06
3508 3823 0.884704 ACGGCGAAGTGCTTGATGTT 60.885 50.000 16.62 0.00 45.43 2.71
3509 3824 0.238289 CGGCGAAGTGCTTGATGTTT 59.762 50.000 0.00 0.00 45.43 2.83
3510 3825 1.725931 CGGCGAAGTGCTTGATGTTTC 60.726 52.381 0.00 0.00 45.43 2.78
3511 3826 1.537202 GGCGAAGTGCTTGATGTTTCT 59.463 47.619 0.00 0.00 45.43 2.52
3512 3827 2.578495 GCGAAGTGCTTGATGTTTCTG 58.422 47.619 0.00 0.00 41.73 3.02
3513 3828 2.666619 GCGAAGTGCTTGATGTTTCTGG 60.667 50.000 0.00 0.00 41.73 3.86
3514 3829 2.095567 CGAAGTGCTTGATGTTTCTGGG 60.096 50.000 0.00 0.00 0.00 4.45
3515 3830 1.915141 AGTGCTTGATGTTTCTGGGG 58.085 50.000 0.00 0.00 0.00 4.96
3516 3831 1.425066 AGTGCTTGATGTTTCTGGGGA 59.575 47.619 0.00 0.00 0.00 4.81
3517 3832 1.541588 GTGCTTGATGTTTCTGGGGAC 59.458 52.381 0.00 0.00 0.00 4.46
3530 3845 2.509336 GGGACCTCATGACGCACG 60.509 66.667 0.00 0.00 0.00 5.34
3531 3846 3.188786 GGACCTCATGACGCACGC 61.189 66.667 0.00 0.00 0.00 5.34
3532 3847 2.432456 GACCTCATGACGCACGCA 60.432 61.111 0.00 0.00 0.00 5.24
3533 3848 2.433145 ACCTCATGACGCACGCAG 60.433 61.111 0.00 0.00 0.00 5.18
3534 3849 3.857854 CCTCATGACGCACGCAGC 61.858 66.667 0.00 0.00 40.87 5.25
3535 3850 3.857854 CTCATGACGCACGCAGCC 61.858 66.667 0.00 0.00 41.38 4.85
3538 3853 4.783621 ATGACGCACGCAGCCCAT 62.784 61.111 0.00 0.00 41.38 4.00
3551 3866 3.840594 CCCATGGCGCCCACAATG 61.841 66.667 26.77 20.32 35.80 2.82
3552 3867 3.840594 CCATGGCGCCCACAATGG 61.841 66.667 26.77 25.34 35.80 3.16
3553 3868 2.755064 CATGGCGCCCACAATGGA 60.755 61.111 26.77 1.65 40.96 3.41
3554 3869 2.129146 CATGGCGCCCACAATGGAT 61.129 57.895 26.77 4.61 40.96 3.41
3555 3870 1.381599 ATGGCGCCCACAATGGATT 60.382 52.632 26.77 0.00 40.96 3.01
3556 3871 0.977108 ATGGCGCCCACAATGGATTT 60.977 50.000 26.77 0.00 40.96 2.17
3557 3872 0.323816 TGGCGCCCACAATGGATTTA 60.324 50.000 26.77 0.00 40.96 1.40
3558 3873 0.385390 GGCGCCCACAATGGATTTAG 59.615 55.000 18.11 0.00 40.96 1.85
3559 3874 1.102978 GCGCCCACAATGGATTTAGT 58.897 50.000 0.00 0.00 40.96 2.24
3560 3875 1.476488 GCGCCCACAATGGATTTAGTT 59.524 47.619 0.00 0.00 40.96 2.24
3561 3876 2.094234 GCGCCCACAATGGATTTAGTTT 60.094 45.455 0.00 0.00 40.96 2.66
3562 3877 3.616317 GCGCCCACAATGGATTTAGTTTT 60.616 43.478 0.00 0.00 40.96 2.43
3563 3878 3.925913 CGCCCACAATGGATTTAGTTTTG 59.074 43.478 0.00 0.00 40.96 2.44
3564 3879 3.684305 GCCCACAATGGATTTAGTTTTGC 59.316 43.478 0.00 0.00 40.96 3.68
3565 3880 4.802248 GCCCACAATGGATTTAGTTTTGCA 60.802 41.667 0.00 0.00 40.96 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.090103 CTGTCCTGGTGAGGTAATATAATCTTA 57.910 37.037 0.00 0.00 40.76 2.10
136 137 2.745884 CATCGCCCCGTCTTGCAA 60.746 61.111 0.00 0.00 0.00 4.08
158 159 2.351244 CCGCTGAGGCAGTAGACCA 61.351 63.158 0.00 0.00 38.60 4.02
178 179 1.664017 CGCCGCATCCTGATCTGAG 60.664 63.158 0.38 0.00 0.00 3.35
300 301 1.147191 TGGGCGATCTAGATGGGTACT 59.853 52.381 10.74 0.00 0.00 2.73
343 344 1.204146 GTGGGGAATGGAGTGAGCTA 58.796 55.000 0.00 0.00 0.00 3.32
418 419 0.178876 TCTGGTGATGGGGAACAGGA 60.179 55.000 0.00 0.00 0.00 3.86
421 422 1.351017 GAACTCTGGTGATGGGGAACA 59.649 52.381 0.00 0.00 0.00 3.18
429 430 2.024941 GGAATTGGGGAACTCTGGTGAT 60.025 50.000 0.00 0.00 0.00 3.06
430 431 1.354368 GGAATTGGGGAACTCTGGTGA 59.646 52.381 0.00 0.00 0.00 4.02
432 433 0.704664 GGGAATTGGGGAACTCTGGT 59.295 55.000 0.00 0.00 0.00 4.00
493 494 1.274712 CCTGCCTTCCTCACTCTCTT 58.725 55.000 0.00 0.00 0.00 2.85
564 617 2.127232 GCGGCGACTGAGCAAAAC 60.127 61.111 12.98 0.00 39.27 2.43
587 640 2.588877 CGGCGGCGATTTGGATCT 60.589 61.111 29.19 0.00 0.00 2.75
609 662 0.637738 CAAACACAACAACAACGGCG 59.362 50.000 4.80 4.80 0.00 6.46
613 666 4.851558 GTCTCTCACAAACACAACAACAAC 59.148 41.667 0.00 0.00 0.00 3.32
614 667 4.377943 CGTCTCTCACAAACACAACAACAA 60.378 41.667 0.00 0.00 0.00 2.83
675 805 0.602638 TCACGCAATTCTGGTCGCTT 60.603 50.000 0.00 0.00 0.00 4.68
690 820 3.487202 CACGTCCCCGCAATCACG 61.487 66.667 0.00 0.00 37.70 4.35
699 829 2.284112 TACCAGTCCCACGTCCCC 60.284 66.667 0.00 0.00 0.00 4.81
704 834 5.786264 ATATTCTAACTACCAGTCCCACG 57.214 43.478 0.00 0.00 0.00 4.94
732 862 2.181021 GACCGTACTCCACCAGCG 59.819 66.667 0.00 0.00 0.00 5.18
733 863 1.215647 CTGACCGTACTCCACCAGC 59.784 63.158 0.00 0.00 0.00 4.85
734 864 0.526662 GACTGACCGTACTCCACCAG 59.473 60.000 0.00 0.00 0.00 4.00
745 875 5.732647 CGTAGCAATTTTAAATGACTGACCG 59.267 40.000 0.00 0.00 0.00 4.79
757 887 4.808558 ACGGTGTAGACGTAGCAATTTTA 58.191 39.130 0.00 0.00 43.60 1.52
764 894 3.826466 ACTTTTACGGTGTAGACGTAGC 58.174 45.455 0.00 0.00 46.01 3.58
768 898 9.075519 TGATTTAATACTTTTACGGTGTAGACG 57.924 33.333 0.00 0.00 37.36 4.18
832 962 2.520465 ATCAACCGATCAGCACCGCA 62.520 55.000 0.00 0.00 0.00 5.69
833 963 1.815421 ATCAACCGATCAGCACCGC 60.815 57.895 0.00 0.00 0.00 5.68
834 964 2.009108 CATCAACCGATCAGCACCG 58.991 57.895 0.00 0.00 0.00 4.94
835 965 1.723870 GCATCAACCGATCAGCACC 59.276 57.895 0.00 0.00 0.00 5.01
836 966 1.349627 CGCATCAACCGATCAGCAC 59.650 57.895 0.00 0.00 0.00 4.40
837 967 1.815003 CCGCATCAACCGATCAGCA 60.815 57.895 0.00 0.00 0.00 4.41
838 968 1.815421 ACCGCATCAACCGATCAGC 60.815 57.895 0.00 0.00 0.00 4.26
839 969 0.740868 ACACCGCATCAACCGATCAG 60.741 55.000 0.00 0.00 0.00 2.90
840 970 0.321210 AACACCGCATCAACCGATCA 60.321 50.000 0.00 0.00 0.00 2.92
841 971 0.096976 CAACACCGCATCAACCGATC 59.903 55.000 0.00 0.00 0.00 3.69
842 972 0.605319 ACAACACCGCATCAACCGAT 60.605 50.000 0.00 0.00 0.00 4.18
843 973 1.227704 ACAACACCGCATCAACCGA 60.228 52.632 0.00 0.00 0.00 4.69
844 974 1.082169 CACAACACCGCATCAACCG 60.082 57.895 0.00 0.00 0.00 4.44
845 975 1.285641 CCACAACACCGCATCAACC 59.714 57.895 0.00 0.00 0.00 3.77
846 976 1.285641 CCCACAACACCGCATCAAC 59.714 57.895 0.00 0.00 0.00 3.18
847 977 2.560119 GCCCACAACACCGCATCAA 61.560 57.895 0.00 0.00 0.00 2.57
848 978 2.983030 GCCCACAACACCGCATCA 60.983 61.111 0.00 0.00 0.00 3.07
849 979 3.747976 GGCCCACAACACCGCATC 61.748 66.667 0.00 0.00 0.00 3.91
850 980 4.594854 TGGCCCACAACACCGCAT 62.595 61.111 0.00 0.00 0.00 4.73
851 981 4.822628 TTGGCCCACAACACCGCA 62.823 61.111 0.00 0.00 33.18 5.69
852 982 2.376228 AATTTGGCCCACAACACCGC 62.376 55.000 0.00 0.00 39.19 5.68
853 983 0.962489 TAATTTGGCCCACAACACCG 59.038 50.000 0.00 0.00 39.19 4.94
854 984 1.336424 CGTAATTTGGCCCACAACACC 60.336 52.381 0.00 0.00 39.19 4.16
855 985 1.336424 CCGTAATTTGGCCCACAACAC 60.336 52.381 0.00 0.00 39.19 3.32
856 986 0.962489 CCGTAATTTGGCCCACAACA 59.038 50.000 0.00 0.00 39.19 3.33
857 987 1.249407 TCCGTAATTTGGCCCACAAC 58.751 50.000 0.00 0.00 39.19 3.32
858 988 1.996798 TTCCGTAATTTGGCCCACAA 58.003 45.000 0.00 0.00 37.28 3.33
859 989 1.821753 CATTCCGTAATTTGGCCCACA 59.178 47.619 0.00 0.00 0.00 4.17
860 990 1.470805 GCATTCCGTAATTTGGCCCAC 60.471 52.381 0.00 0.00 0.00 4.61
861 991 0.820871 GCATTCCGTAATTTGGCCCA 59.179 50.000 0.00 0.00 0.00 5.36
862 992 1.111277 AGCATTCCGTAATTTGGCCC 58.889 50.000 0.00 0.00 0.00 5.80
863 993 4.202111 ACAATAGCATTCCGTAATTTGGCC 60.202 41.667 0.00 0.00 0.00 5.36
864 994 4.932146 ACAATAGCATTCCGTAATTTGGC 58.068 39.130 0.00 0.00 0.00 4.52
865 995 8.918961 TTAAACAATAGCATTCCGTAATTTGG 57.081 30.769 0.00 0.00 0.00 3.28
872 1002 9.042008 CACTACTATTAAACAATAGCATTCCGT 57.958 33.333 4.66 0.00 36.46 4.69
873 1003 8.495949 CCACTACTATTAAACAATAGCATTCCG 58.504 37.037 4.66 0.00 36.46 4.30
874 1004 9.555727 TCCACTACTATTAAACAATAGCATTCC 57.444 33.333 4.66 0.00 36.46 3.01
878 1008 9.764363 CATCTCCACTACTATTAAACAATAGCA 57.236 33.333 4.66 0.00 36.46 3.49
879 1009 9.209175 CCATCTCCACTACTATTAAACAATAGC 57.791 37.037 4.66 0.00 36.46 2.97
882 1012 9.213777 TCTCCATCTCCACTACTATTAAACAAT 57.786 33.333 0.00 0.00 0.00 2.71
883 1013 8.603898 TCTCCATCTCCACTACTATTAAACAA 57.396 34.615 0.00 0.00 0.00 2.83
884 1014 8.783660 ATCTCCATCTCCACTACTATTAAACA 57.216 34.615 0.00 0.00 0.00 2.83
891 1021 9.026121 GCTTTTATATCTCCATCTCCACTACTA 57.974 37.037 0.00 0.00 0.00 1.82
892 1022 7.732593 AGCTTTTATATCTCCATCTCCACTACT 59.267 37.037 0.00 0.00 0.00 2.57
893 1023 7.816995 CAGCTTTTATATCTCCATCTCCACTAC 59.183 40.741 0.00 0.00 0.00 2.73
894 1024 7.730332 TCAGCTTTTATATCTCCATCTCCACTA 59.270 37.037 0.00 0.00 0.00 2.74
895 1025 6.556495 TCAGCTTTTATATCTCCATCTCCACT 59.444 38.462 0.00 0.00 0.00 4.00
896 1026 6.648725 GTCAGCTTTTATATCTCCATCTCCAC 59.351 42.308 0.00 0.00 0.00 4.02
897 1027 6.327365 TGTCAGCTTTTATATCTCCATCTCCA 59.673 38.462 0.00 0.00 0.00 3.86
898 1028 6.763355 TGTCAGCTTTTATATCTCCATCTCC 58.237 40.000 0.00 0.00 0.00 3.71
899 1029 7.148440 GCATGTCAGCTTTTATATCTCCATCTC 60.148 40.741 0.00 0.00 0.00 2.75
900 1030 6.654161 GCATGTCAGCTTTTATATCTCCATCT 59.346 38.462 0.00 0.00 0.00 2.90
901 1031 6.429078 TGCATGTCAGCTTTTATATCTCCATC 59.571 38.462 0.00 0.00 34.99 3.51
902 1032 6.206243 GTGCATGTCAGCTTTTATATCTCCAT 59.794 38.462 0.00 0.00 34.99 3.41
903 1033 5.528690 GTGCATGTCAGCTTTTATATCTCCA 59.471 40.000 0.00 0.00 34.99 3.86
904 1034 5.049129 GGTGCATGTCAGCTTTTATATCTCC 60.049 44.000 10.72 0.00 39.95 3.71
905 1035 5.049129 GGGTGCATGTCAGCTTTTATATCTC 60.049 44.000 15.51 0.00 42.57 2.75
906 1036 4.823989 GGGTGCATGTCAGCTTTTATATCT 59.176 41.667 15.51 0.00 42.57 1.98
907 1037 4.319766 CGGGTGCATGTCAGCTTTTATATC 60.320 45.833 15.51 0.96 42.57 1.63
908 1038 3.565482 CGGGTGCATGTCAGCTTTTATAT 59.435 43.478 15.51 0.00 42.57 0.86
909 1039 2.942376 CGGGTGCATGTCAGCTTTTATA 59.058 45.455 15.51 0.00 42.57 0.98
910 1040 1.745087 CGGGTGCATGTCAGCTTTTAT 59.255 47.619 15.51 0.00 42.57 1.40
911 1041 1.164411 CGGGTGCATGTCAGCTTTTA 58.836 50.000 15.51 0.00 42.57 1.52
912 1042 1.526575 CCGGGTGCATGTCAGCTTTT 61.527 55.000 15.51 0.00 42.57 2.27
913 1043 1.973281 CCGGGTGCATGTCAGCTTT 60.973 57.895 15.51 0.00 42.57 3.51
916 1046 3.127533 GTCCGGGTGCATGTCAGC 61.128 66.667 0.00 9.83 42.24 4.26
949 1079 1.639108 TGGGGACTAGTAGCTGACAGA 59.361 52.381 6.65 0.00 0.00 3.41
1165 1316 1.529713 GAGGGGCCGAGAGTAGGAG 60.530 68.421 0.00 0.00 0.00 3.69
1184 1335 3.644399 GACGGGGAGAGAACACGCC 62.644 68.421 0.00 0.00 36.64 5.68
1248 1399 0.179150 AGATGACGAGCGAGAAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
1285 1436 2.038975 CGGAGTGGGGAGGGAGAA 59.961 66.667 0.00 0.00 0.00 2.87
1410 1561 2.032634 CAGCTTTAGGACGCGGCAA 61.033 57.895 17.00 0.00 0.00 4.52
1506 1657 1.673626 GGCATTTCGTCGAACACCCTA 60.674 52.381 7.29 0.00 0.00 3.53
1623 1774 4.006989 CGTTCCACCATGAAATGTTCCTA 58.993 43.478 0.00 0.00 44.81 2.94
1695 1846 2.250924 TCAGGCATCTCACTGAAGACA 58.749 47.619 0.00 0.00 40.51 3.41
1723 1874 3.743521 TCAAGGAGTTCCATGACACAAG 58.256 45.455 2.13 0.00 38.65 3.16
1989 2140 0.028770 TTTCAAAGACTTGCGTGGCG 59.971 50.000 0.00 0.00 32.14 5.69
2208 2363 4.083324 ACATCTGGCACAATTTTGTAGTCG 60.083 41.667 0.00 0.00 39.91 4.18
2226 2381 2.943033 GCACCCGTAATGCTTAACATCT 59.057 45.455 0.00 0.00 38.34 2.90
2557 2713 6.315091 TCTTCGCTCTAAATATTAGCTCGT 57.685 37.500 7.03 0.00 34.03 4.18
2649 2806 3.350833 ACAAAGGAGGAATGCTAAGCTG 58.649 45.455 0.00 0.00 0.00 4.24
2725 2882 4.397417 AGCCTACAAAATCACATCAAGCTC 59.603 41.667 0.00 0.00 0.00 4.09
2749 2919 0.110192 GCTTAGAAGCGGCAACACAC 60.110 55.000 1.45 0.00 42.88 3.82
2750 2920 2.244000 GCTTAGAAGCGGCAACACA 58.756 52.632 1.45 0.00 42.88 3.72
2799 2969 8.567285 AATAAACAAACTCAGGATGGTCTAAG 57.433 34.615 0.00 0.00 36.16 2.18
2817 2989 9.383519 CCTCTCAGCTTAATAACAGAATAAACA 57.616 33.333 0.00 0.00 0.00 2.83
2856 3028 4.343526 TCTTAAAACAGGCCATTTTCAGCA 59.656 37.500 18.15 7.38 31.79 4.41
2897 3069 6.699642 TCCAGCAAAGGAAAATAAACTTTTCG 59.300 34.615 4.81 0.00 38.82 3.46
2904 3076 6.010219 AGTAGCTCCAGCAAAGGAAAATAAA 58.990 36.000 0.48 0.00 45.16 1.40
2908 3080 3.508845 AGTAGCTCCAGCAAAGGAAAA 57.491 42.857 0.48 0.00 45.16 2.29
3023 3195 9.069078 CATATCATTTGTGACATCTTGTTTCAC 57.931 33.333 0.00 0.00 0.00 3.18
3055 3227 1.101331 GGGTAGGTAGACGTGGACAG 58.899 60.000 0.00 0.00 0.00 3.51
3148 3354 9.528018 AAAACCGCAACAAATATTATGGATTAG 57.472 29.630 0.00 0.00 0.00 1.73
3149 3355 9.307121 CAAAACCGCAACAAATATTATGGATTA 57.693 29.630 0.00 0.00 0.00 1.75
3161 3367 2.413453 GCAAGTTCAAAACCGCAACAAA 59.587 40.909 0.00 0.00 32.32 2.83
3162 3368 1.996191 GCAAGTTCAAAACCGCAACAA 59.004 42.857 0.00 0.00 32.32 2.83
3254 3569 3.644606 CACTCCCACCTGCAGCCT 61.645 66.667 8.66 0.00 0.00 4.58
3255 3570 4.729918 CCACTCCCACCTGCAGCC 62.730 72.222 8.66 0.00 0.00 4.85
3256 3571 1.626356 TATCCACTCCCACCTGCAGC 61.626 60.000 8.66 0.00 0.00 5.25
3257 3572 0.911769 TTATCCACTCCCACCTGCAG 59.088 55.000 6.78 6.78 0.00 4.41
3258 3573 1.595311 ATTATCCACTCCCACCTGCA 58.405 50.000 0.00 0.00 0.00 4.41
3259 3574 2.706190 ACTATTATCCACTCCCACCTGC 59.294 50.000 0.00 0.00 0.00 4.85
3260 3575 3.071602 CCACTATTATCCACTCCCACCTG 59.928 52.174 0.00 0.00 0.00 4.00
3261 3576 3.318313 CCACTATTATCCACTCCCACCT 58.682 50.000 0.00 0.00 0.00 4.00
3262 3577 2.372172 CCCACTATTATCCACTCCCACC 59.628 54.545 0.00 0.00 0.00 4.61
3263 3578 3.071167 GTCCCACTATTATCCACTCCCAC 59.929 52.174 0.00 0.00 0.00 4.61
3264 3579 3.051341 AGTCCCACTATTATCCACTCCCA 60.051 47.826 0.00 0.00 0.00 4.37
3265 3580 3.588569 AGTCCCACTATTATCCACTCCC 58.411 50.000 0.00 0.00 0.00 4.30
3266 3581 5.839606 AGTTAGTCCCACTATTATCCACTCC 59.160 44.000 0.00 0.00 29.64 3.85
3267 3582 6.980416 AGTTAGTCCCACTATTATCCACTC 57.020 41.667 0.00 0.00 29.64 3.51
3268 3583 7.015389 GCTAAGTTAGTCCCACTATTATCCACT 59.985 40.741 11.51 0.00 29.64 4.00
3269 3584 7.153315 GCTAAGTTAGTCCCACTATTATCCAC 58.847 42.308 11.51 0.00 29.64 4.02
3270 3585 6.269307 GGCTAAGTTAGTCCCACTATTATCCA 59.731 42.308 11.51 0.00 29.64 3.41
3271 3586 6.295745 GGGCTAAGTTAGTCCCACTATTATCC 60.296 46.154 25.53 10.15 44.88 2.59
3272 3587 6.699366 GGGCTAAGTTAGTCCCACTATTATC 58.301 44.000 25.53 2.24 44.88 1.75
3273 3588 6.683312 GGGCTAAGTTAGTCCCACTATTAT 57.317 41.667 25.53 0.00 44.88 1.28
3283 3598 2.772515 AGTGGGATGGGCTAAGTTAGTC 59.227 50.000 11.51 8.87 0.00 2.59
3284 3599 2.846950 AGTGGGATGGGCTAAGTTAGT 58.153 47.619 11.51 0.00 0.00 2.24
3285 3600 3.933861 AAGTGGGATGGGCTAAGTTAG 57.066 47.619 5.47 5.47 0.00 2.34
3286 3601 5.252164 AGTTTAAGTGGGATGGGCTAAGTTA 59.748 40.000 0.00 0.00 0.00 2.24
3287 3602 4.044191 AGTTTAAGTGGGATGGGCTAAGTT 59.956 41.667 0.00 0.00 0.00 2.66
3288 3603 3.591977 AGTTTAAGTGGGATGGGCTAAGT 59.408 43.478 0.00 0.00 0.00 2.24
3289 3604 3.947834 CAGTTTAAGTGGGATGGGCTAAG 59.052 47.826 0.00 0.00 0.00 2.18
3290 3605 3.332485 ACAGTTTAAGTGGGATGGGCTAA 59.668 43.478 4.72 0.00 0.00 3.09
3291 3606 2.916934 ACAGTTTAAGTGGGATGGGCTA 59.083 45.455 4.72 0.00 0.00 3.93
3292 3607 1.710809 ACAGTTTAAGTGGGATGGGCT 59.289 47.619 4.72 0.00 0.00 5.19
3293 3608 2.215942 ACAGTTTAAGTGGGATGGGC 57.784 50.000 4.72 0.00 0.00 5.36
3294 3609 5.183140 CACTAAACAGTTTAAGTGGGATGGG 59.817 44.000 18.58 4.78 0.00 4.00
3295 3610 5.183140 CCACTAAACAGTTTAAGTGGGATGG 59.817 44.000 27.31 15.48 38.86 3.51
3296 3611 6.001460 TCCACTAAACAGTTTAAGTGGGATG 58.999 40.000 30.34 18.16 40.65 3.51
3297 3612 6.195600 TCCACTAAACAGTTTAAGTGGGAT 57.804 37.500 30.34 4.86 40.65 3.85
3298 3613 5.633655 TCCACTAAACAGTTTAAGTGGGA 57.366 39.130 30.34 21.16 40.65 4.37
3299 3614 6.072119 GGAATCCACTAAACAGTTTAAGTGGG 60.072 42.308 30.34 19.95 40.65 4.61
3300 3615 6.072119 GGGAATCCACTAAACAGTTTAAGTGG 60.072 42.308 28.15 28.15 41.08 4.00
3301 3616 6.488683 TGGGAATCCACTAAACAGTTTAAGTG 59.511 38.462 19.01 19.01 38.32 3.16
3302 3617 6.607019 TGGGAATCCACTAAACAGTTTAAGT 58.393 36.000 7.18 5.11 38.32 2.24
3322 3637 2.988636 TTTTGTGATGTCCCATGGGA 57.011 45.000 30.62 30.62 42.90 4.37
3323 3638 4.556592 AAATTTTGTGATGTCCCATGGG 57.443 40.909 26.30 26.30 0.00 4.00
3324 3639 7.066043 CCATTTAAATTTTGTGATGTCCCATGG 59.934 37.037 4.14 4.14 0.00 3.66
3325 3640 7.066043 CCCATTTAAATTTTGTGATGTCCCATG 59.934 37.037 0.00 0.00 0.00 3.66
3326 3641 7.111466 CCCATTTAAATTTTGTGATGTCCCAT 58.889 34.615 0.00 0.00 0.00 4.00
3327 3642 6.471146 CCCATTTAAATTTTGTGATGTCCCA 58.529 36.000 0.00 0.00 0.00 4.37
3328 3643 5.353956 GCCCATTTAAATTTTGTGATGTCCC 59.646 40.000 0.00 0.00 0.00 4.46
3329 3644 6.172630 AGCCCATTTAAATTTTGTGATGTCC 58.827 36.000 0.00 0.00 0.00 4.02
3330 3645 8.947055 ATAGCCCATTTAAATTTTGTGATGTC 57.053 30.769 0.00 0.00 0.00 3.06
3331 3646 7.986889 GGATAGCCCATTTAAATTTTGTGATGT 59.013 33.333 0.00 0.00 34.14 3.06
3332 3647 8.369218 GGATAGCCCATTTAAATTTTGTGATG 57.631 34.615 0.00 0.00 34.14 3.07
3350 3665 5.665916 CCAATGGATTAAATGGGATAGCC 57.334 43.478 0.00 0.00 0.00 3.93
3357 3672 3.569701 CGAGGTCCCAATGGATTAAATGG 59.430 47.826 0.00 0.00 44.28 3.16
3358 3673 3.004734 GCGAGGTCCCAATGGATTAAATG 59.995 47.826 0.00 0.00 44.28 2.32
3359 3674 3.222603 GCGAGGTCCCAATGGATTAAAT 58.777 45.455 0.00 0.00 44.28 1.40
3360 3675 2.650322 GCGAGGTCCCAATGGATTAAA 58.350 47.619 0.00 0.00 44.28 1.52
3361 3676 1.133915 GGCGAGGTCCCAATGGATTAA 60.134 52.381 0.00 0.00 44.28 1.40
3362 3677 0.472471 GGCGAGGTCCCAATGGATTA 59.528 55.000 0.00 0.00 44.28 1.75
3363 3678 1.227383 GGCGAGGTCCCAATGGATT 59.773 57.895 0.00 0.00 44.28 3.01
3364 3679 1.570857 TTGGCGAGGTCCCAATGGAT 61.571 55.000 0.00 0.00 44.28 3.41
3365 3680 1.784301 TTTGGCGAGGTCCCAATGGA 61.784 55.000 0.00 0.00 41.64 3.41
3366 3681 1.304052 TTTGGCGAGGTCCCAATGG 60.304 57.895 0.00 0.00 41.64 3.16
3367 3682 1.595093 GGTTTGGCGAGGTCCCAATG 61.595 60.000 0.00 0.00 41.64 2.82
3368 3683 1.304134 GGTTTGGCGAGGTCCCAAT 60.304 57.895 0.00 0.00 41.64 3.16
3369 3684 2.114411 GGTTTGGCGAGGTCCCAA 59.886 61.111 0.00 0.00 40.43 4.12
3370 3685 3.961414 GGGTTTGGCGAGGTCCCA 61.961 66.667 6.79 0.00 38.15 4.37
3373 3688 4.699522 AGCGGGTTTGGCGAGGTC 62.700 66.667 0.00 0.00 35.00 3.85
3374 3689 3.785122 AAAGCGGGTTTGGCGAGGT 62.785 57.895 4.10 0.00 35.00 3.85
3375 3690 2.983592 AAAGCGGGTTTGGCGAGG 60.984 61.111 4.10 0.00 35.00 4.63
3376 3691 2.255252 CAAAGCGGGTTTGGCGAG 59.745 61.111 21.61 0.00 41.78 5.03
3377 3692 3.972276 GCAAAGCGGGTTTGGCGA 61.972 61.111 27.82 0.00 45.10 5.54
3380 3695 3.551887 GACGGCAAAGCGGGTTTGG 62.552 63.158 27.82 17.44 45.10 3.28
3382 3697 3.292159 GGACGGCAAAGCGGGTTT 61.292 61.111 0.00 0.00 33.14 3.27
3387 3702 4.038080 GTTGGGGACGGCAAAGCG 62.038 66.667 0.00 0.00 0.00 4.68
3388 3703 2.909965 TGTTGGGGACGGCAAAGC 60.910 61.111 0.00 0.00 0.00 3.51
3389 3704 1.106944 AACTGTTGGGGACGGCAAAG 61.107 55.000 0.00 0.00 38.24 2.77
3390 3705 1.076632 AACTGTTGGGGACGGCAAA 60.077 52.632 0.00 0.00 38.24 3.68
3391 3706 1.527380 GAACTGTTGGGGACGGCAA 60.527 57.895 0.00 0.00 38.24 4.52
3392 3707 2.112297 GAACTGTTGGGGACGGCA 59.888 61.111 0.00 0.00 38.24 5.69
3393 3708 1.671379 GAGAACTGTTGGGGACGGC 60.671 63.158 0.00 0.00 38.24 5.68
3394 3709 1.067071 GTAGAGAACTGTTGGGGACGG 60.067 57.143 0.00 0.00 40.65 4.79
3395 3710 1.067071 GGTAGAGAACTGTTGGGGACG 60.067 57.143 0.00 0.00 0.00 4.79
3396 3711 1.975680 TGGTAGAGAACTGTTGGGGAC 59.024 52.381 0.00 0.00 0.00 4.46
3397 3712 2.409064 TGGTAGAGAACTGTTGGGGA 57.591 50.000 0.00 0.00 0.00 4.81
3398 3713 2.571653 TCATGGTAGAGAACTGTTGGGG 59.428 50.000 0.00 0.00 0.00 4.96
3399 3714 3.981071 TCATGGTAGAGAACTGTTGGG 57.019 47.619 0.00 0.00 0.00 4.12
3400 3715 4.872691 GTGATCATGGTAGAGAACTGTTGG 59.127 45.833 0.00 0.00 0.00 3.77
3401 3716 5.349817 GTGTGATCATGGTAGAGAACTGTTG 59.650 44.000 0.00 0.00 0.00 3.33
3402 3717 5.012046 TGTGTGATCATGGTAGAGAACTGTT 59.988 40.000 0.00 0.00 0.00 3.16
3403 3718 4.528206 TGTGTGATCATGGTAGAGAACTGT 59.472 41.667 0.00 0.00 0.00 3.55
3404 3719 5.077134 TGTGTGATCATGGTAGAGAACTG 57.923 43.478 0.00 0.00 0.00 3.16
3405 3720 5.660417 AGATGTGTGATCATGGTAGAGAACT 59.340 40.000 0.00 0.00 0.00 3.01
3406 3721 5.752472 CAGATGTGTGATCATGGTAGAGAAC 59.248 44.000 0.00 0.00 0.00 3.01
3407 3722 5.163374 CCAGATGTGTGATCATGGTAGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
3408 3723 4.343239 CCAGATGTGTGATCATGGTAGAGA 59.657 45.833 0.00 0.00 0.00 3.10
3409 3724 4.100653 ACCAGATGTGTGATCATGGTAGAG 59.899 45.833 13.53 0.00 0.00 2.43
3410 3725 4.033009 ACCAGATGTGTGATCATGGTAGA 58.967 43.478 13.53 0.00 0.00 2.59
3411 3726 4.412796 ACCAGATGTGTGATCATGGTAG 57.587 45.455 13.53 0.00 0.00 3.18
3412 3727 4.962362 AGTACCAGATGTGTGATCATGGTA 59.038 41.667 16.27 16.27 30.39 3.25
3413 3728 3.776969 AGTACCAGATGTGTGATCATGGT 59.223 43.478 17.99 17.99 31.86 3.55
3414 3729 4.412796 AGTACCAGATGTGTGATCATGG 57.587 45.455 8.86 8.86 0.00 3.66
3415 3730 4.505556 CGAAGTACCAGATGTGTGATCATG 59.494 45.833 0.00 0.00 0.00 3.07
3416 3731 4.686972 CGAAGTACCAGATGTGTGATCAT 58.313 43.478 0.00 0.00 0.00 2.45
3417 3732 3.676049 GCGAAGTACCAGATGTGTGATCA 60.676 47.826 0.00 0.00 0.00 2.92
3418 3733 2.860735 GCGAAGTACCAGATGTGTGATC 59.139 50.000 0.00 0.00 0.00 2.92
3419 3734 2.418746 GGCGAAGTACCAGATGTGTGAT 60.419 50.000 0.00 0.00 0.00 3.06
3420 3735 1.067142 GGCGAAGTACCAGATGTGTGA 60.067 52.381 0.00 0.00 0.00 3.58
3421 3736 1.359848 GGCGAAGTACCAGATGTGTG 58.640 55.000 0.00 0.00 0.00 3.82
3422 3737 0.108804 CGGCGAAGTACCAGATGTGT 60.109 55.000 0.00 0.00 0.00 3.72
3423 3738 0.806102 CCGGCGAAGTACCAGATGTG 60.806 60.000 9.30 0.00 0.00 3.21
3424 3739 0.968901 TCCGGCGAAGTACCAGATGT 60.969 55.000 9.30 0.00 0.00 3.06
3425 3740 0.249073 CTCCGGCGAAGTACCAGATG 60.249 60.000 9.30 0.00 0.00 2.90
3426 3741 2.017559 GCTCCGGCGAAGTACCAGAT 62.018 60.000 9.30 0.00 0.00 2.90
3427 3742 2.707849 GCTCCGGCGAAGTACCAGA 61.708 63.158 9.30 0.00 0.00 3.86
3428 3743 2.202756 GCTCCGGCGAAGTACCAG 60.203 66.667 9.30 0.00 0.00 4.00
3438 3753 3.030882 GTCGATTAGCGCTCCGGC 61.031 66.667 16.34 14.75 40.61 6.13
3439 3754 2.354773 GGTCGATTAGCGCTCCGG 60.355 66.667 16.34 1.59 40.61 5.14
3440 3755 1.658717 CTGGTCGATTAGCGCTCCG 60.659 63.158 16.34 16.88 40.61 4.63
3441 3756 1.300233 CCTGGTCGATTAGCGCTCC 60.300 63.158 16.34 8.72 40.61 4.70
3442 3757 1.300233 CCCTGGTCGATTAGCGCTC 60.300 63.158 16.34 0.00 40.61 5.03
3443 3758 1.739338 CTCCCTGGTCGATTAGCGCT 61.739 60.000 17.26 17.26 40.61 5.92
3444 3759 1.300233 CTCCCTGGTCGATTAGCGC 60.300 63.158 0.00 0.00 40.61 5.92
3445 3760 1.364171 CCTCCCTGGTCGATTAGCG 59.636 63.158 0.00 0.00 42.69 4.26
3446 3761 1.069935 GCCTCCCTGGTCGATTAGC 59.930 63.158 0.00 0.00 38.35 3.09
3447 3762 1.749033 GGCCTCCCTGGTCGATTAG 59.251 63.158 0.00 0.00 38.35 1.73
3448 3763 1.764854 GGGCCTCCCTGGTCGATTA 60.765 63.158 0.84 0.00 42.62 1.75
3449 3764 3.090532 GGGCCTCCCTGGTCGATT 61.091 66.667 0.84 0.00 42.62 3.34
3456 3771 3.963124 AATTTGCCGGGCCTCCCTG 62.963 63.158 17.97 0.00 42.67 4.45
3457 3772 3.672503 AATTTGCCGGGCCTCCCT 61.673 61.111 17.97 0.00 42.67 4.20
3458 3773 3.460868 CAATTTGCCGGGCCTCCC 61.461 66.667 17.97 0.00 41.09 4.30
3459 3774 2.362375 TCAATTTGCCGGGCCTCC 60.362 61.111 17.97 0.00 0.00 4.30
3460 3775 2.710902 GGTCAATTTGCCGGGCCTC 61.711 63.158 17.97 0.00 0.00 4.70
3461 3776 2.679996 GGTCAATTTGCCGGGCCT 60.680 61.111 17.97 0.00 0.00 5.19
3462 3777 4.128388 CGGTCAATTTGCCGGGCC 62.128 66.667 17.97 0.00 43.85 5.80
3467 3782 1.531739 TTGAGGCCGGTCAATTTGCC 61.532 55.000 9.71 0.00 44.35 4.52
3468 3783 0.109132 CTTGAGGCCGGTCAATTTGC 60.109 55.000 9.71 0.00 35.88 3.68
3469 3784 1.247567 ACTTGAGGCCGGTCAATTTG 58.752 50.000 9.71 0.00 35.88 2.32
3470 3785 2.433436 GTACTTGAGGCCGGTCAATTT 58.567 47.619 9.71 1.75 35.88 1.82
3471 3786 1.674817 CGTACTTGAGGCCGGTCAATT 60.675 52.381 9.71 5.85 35.88 2.32
3472 3787 0.108329 CGTACTTGAGGCCGGTCAAT 60.108 55.000 9.71 2.32 35.88 2.57
3473 3788 1.290955 CGTACTTGAGGCCGGTCAA 59.709 57.895 9.71 8.19 35.16 3.18
3474 3789 2.642254 CCGTACTTGAGGCCGGTCA 61.642 63.158 9.71 0.00 35.78 4.02
3475 3790 2.183555 CCGTACTTGAGGCCGGTC 59.816 66.667 0.00 0.00 35.78 4.79
3481 3796 1.352156 GCACTTCGCCGTACTTGAGG 61.352 60.000 0.00 0.00 32.94 3.86
3482 3797 0.388649 AGCACTTCGCCGTACTTGAG 60.389 55.000 0.00 0.00 44.04 3.02
3483 3798 0.032952 AAGCACTTCGCCGTACTTGA 59.967 50.000 0.00 0.00 44.04 3.02
3484 3799 0.163788 CAAGCACTTCGCCGTACTTG 59.836 55.000 3.55 3.55 44.04 3.16
3485 3800 0.032952 TCAAGCACTTCGCCGTACTT 59.967 50.000 0.00 0.00 44.04 2.24
3486 3801 0.246635 ATCAAGCACTTCGCCGTACT 59.753 50.000 0.00 0.00 44.04 2.73
3487 3802 0.370273 CATCAAGCACTTCGCCGTAC 59.630 55.000 0.00 0.00 44.04 3.67
3488 3803 0.037697 ACATCAAGCACTTCGCCGTA 60.038 50.000 0.00 0.00 44.04 4.02
3489 3804 0.884704 AACATCAAGCACTTCGCCGT 60.885 50.000 0.00 0.00 44.04 5.68
3490 3805 0.238289 AAACATCAAGCACTTCGCCG 59.762 50.000 0.00 0.00 44.04 6.46
3491 3806 1.537202 AGAAACATCAAGCACTTCGCC 59.463 47.619 0.00 0.00 44.04 5.54
3492 3807 2.578495 CAGAAACATCAAGCACTTCGC 58.422 47.619 0.00 0.00 42.91 4.70
3493 3808 2.095567 CCCAGAAACATCAAGCACTTCG 60.096 50.000 0.00 0.00 0.00 3.79
3494 3809 2.229784 CCCCAGAAACATCAAGCACTTC 59.770 50.000 0.00 0.00 0.00 3.01
3495 3810 2.158475 TCCCCAGAAACATCAAGCACTT 60.158 45.455 0.00 0.00 0.00 3.16
3496 3811 1.425066 TCCCCAGAAACATCAAGCACT 59.575 47.619 0.00 0.00 0.00 4.40
3497 3812 1.541588 GTCCCCAGAAACATCAAGCAC 59.458 52.381 0.00 0.00 0.00 4.40
3498 3813 1.547675 GGTCCCCAGAAACATCAAGCA 60.548 52.381 0.00 0.00 0.00 3.91
3499 3814 1.177401 GGTCCCCAGAAACATCAAGC 58.823 55.000 0.00 0.00 0.00 4.01
3500 3815 2.040278 TGAGGTCCCCAGAAACATCAAG 59.960 50.000 0.00 0.00 33.69 3.02
3501 3816 2.061848 TGAGGTCCCCAGAAACATCAA 58.938 47.619 0.00 0.00 33.69 2.57
3502 3817 1.741028 TGAGGTCCCCAGAAACATCA 58.259 50.000 0.00 0.00 34.17 3.07
3503 3818 2.239654 TCATGAGGTCCCCAGAAACATC 59.760 50.000 0.00 0.00 0.00 3.06
3504 3819 2.025887 GTCATGAGGTCCCCAGAAACAT 60.026 50.000 0.00 0.00 0.00 2.71
3505 3820 1.351017 GTCATGAGGTCCCCAGAAACA 59.649 52.381 0.00 0.00 0.00 2.83
3506 3821 1.676014 CGTCATGAGGTCCCCAGAAAC 60.676 57.143 7.25 0.00 0.00 2.78
3507 3822 0.613260 CGTCATGAGGTCCCCAGAAA 59.387 55.000 7.25 0.00 0.00 2.52
3508 3823 1.899437 GCGTCATGAGGTCCCCAGAA 61.899 60.000 16.27 0.00 0.00 3.02
3509 3824 2.359169 GCGTCATGAGGTCCCCAGA 61.359 63.158 16.27 0.00 0.00 3.86
3510 3825 2.187946 GCGTCATGAGGTCCCCAG 59.812 66.667 16.27 0.00 0.00 4.45
3511 3826 2.606213 TGCGTCATGAGGTCCCCA 60.606 61.111 16.27 3.62 0.00 4.96
3512 3827 2.125106 GTGCGTCATGAGGTCCCC 60.125 66.667 16.27 1.06 0.00 4.81
3513 3828 2.509336 CGTGCGTCATGAGGTCCC 60.509 66.667 16.27 1.40 0.00 4.46
3514 3829 3.188786 GCGTGCGTCATGAGGTCC 61.189 66.667 16.27 6.79 0.00 4.46
3515 3830 2.432456 TGCGTGCGTCATGAGGTC 60.432 61.111 16.27 9.48 0.00 3.85
3516 3831 2.433145 CTGCGTGCGTCATGAGGT 60.433 61.111 16.27 0.00 0.00 3.85
3517 3832 3.857854 GCTGCGTGCGTCATGAGG 61.858 66.667 11.07 11.07 0.00 3.86
3518 3833 3.857854 GGCTGCGTGCGTCATGAG 61.858 66.667 0.00 0.00 44.05 2.90
3521 3836 4.783621 ATGGGCTGCGTGCGTCAT 62.784 61.111 0.00 0.63 44.05 3.06
3534 3849 3.840594 CATTGTGGGCGCCATGGG 61.841 66.667 30.85 8.29 35.28 4.00
3535 3850 3.840594 CCATTGTGGGCGCCATGG 61.841 66.667 30.85 27.09 35.28 3.66
3536 3851 1.678598 AATCCATTGTGGGCGCCATG 61.679 55.000 30.85 22.24 38.32 3.66
3537 3852 0.977108 AAATCCATTGTGGGCGCCAT 60.977 50.000 30.85 10.45 38.32 4.40
3538 3853 0.323816 TAAATCCATTGTGGGCGCCA 60.324 50.000 30.85 12.04 38.32 5.69
3539 3854 0.385390 CTAAATCCATTGTGGGCGCC 59.615 55.000 21.18 21.18 38.32 6.53
3540 3855 1.102978 ACTAAATCCATTGTGGGCGC 58.897 50.000 0.00 0.00 38.32 6.53
3541 3856 3.866883 AAACTAAATCCATTGTGGGCG 57.133 42.857 0.00 0.00 38.32 6.13
3542 3857 3.684305 GCAAAACTAAATCCATTGTGGGC 59.316 43.478 0.00 0.00 38.32 5.36
3543 3858 4.892433 TGCAAAACTAAATCCATTGTGGG 58.108 39.130 0.00 0.00 38.32 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.