Multiple sequence alignment - TraesCS4D01G118500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G118500 chr4D 100.000 3350 0 0 1 3350 99163709 99160360 0.000000e+00 6187
1 TraesCS4D01G118500 chr4B 93.824 2866 125 23 2 2817 141429969 141427106 0.000000e+00 4265
2 TraesCS4D01G118500 chr4B 94.762 210 11 0 3141 3350 141426576 141426367 8.960000e-86 327
3 TraesCS4D01G118500 chr4B 93.370 181 11 1 2880 3059 141426755 141426575 1.980000e-67 267
4 TraesCS4D01G118500 chr4B 95.775 71 3 0 2814 2884 141427065 141426995 7.600000e-22 115
5 TraesCS4D01G118500 chr4A 94.726 2522 80 13 339 2817 476978368 476980879 0.000000e+00 3871
6 TraesCS4D01G118500 chr4A 90.036 281 20 3 1 280 476978094 476978367 1.140000e-94 357
7 TraesCS4D01G118500 chr4A 94.949 198 8 2 3141 3338 476981154 476981349 3.250000e-80 309
8 TraesCS4D01G118500 chr4A 89.431 246 16 5 2814 3059 476980920 476981155 5.430000e-78 302
9 TraesCS4D01G118500 chr4A 93.000 100 7 0 3043 3142 456399205 456399106 2.690000e-31 147
10 TraesCS4D01G118500 chr5D 84.928 1327 194 4 1007 2328 231352563 231351238 0.000000e+00 1338
11 TraesCS4D01G118500 chr5D 89.744 117 9 3 3048 3161 128577577 128577693 2.690000e-31 147
12 TraesCS4D01G118500 chr5A 81.437 1670 258 35 677 2328 325931515 325933150 0.000000e+00 1319
13 TraesCS4D01G118500 chr5B 80.932 1652 257 34 677 2319 275033223 275034825 0.000000e+00 1253
14 TraesCS4D01G118500 chr5B 89.744 117 9 3 3048 3161 140965919 140966035 2.690000e-31 147
15 TraesCS4D01G118500 chr7D 96.739 92 2 1 3051 3142 345777433 345777523 5.790000e-33 152
16 TraesCS4D01G118500 chr6A 94.898 98 4 1 3050 3146 447160946 447160849 5.790000e-33 152
17 TraesCS4D01G118500 chr2D 94.059 101 4 2 3047 3146 131465398 131465299 5.790000e-33 152
18 TraesCS4D01G118500 chr6B 94.898 98 2 3 3058 3153 206866807 206866711 2.080000e-32 150
19 TraesCS4D01G118500 chr1B 90.435 115 7 3 3054 3166 606315157 606315269 7.490000e-32 148
20 TraesCS4D01G118500 chr3A 90.351 114 7 3 3055 3164 686127448 686127561 2.690000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G118500 chr4D 99160360 99163709 3349 True 6187.00 6187 100.00000 1 3350 1 chr4D.!!$R1 3349
1 TraesCS4D01G118500 chr4B 141426367 141429969 3602 True 1243.50 4265 94.43275 2 3350 4 chr4B.!!$R1 3348
2 TraesCS4D01G118500 chr4A 476978094 476981349 3255 False 1209.75 3871 92.28550 1 3338 4 chr4A.!!$F1 3337
3 TraesCS4D01G118500 chr5D 231351238 231352563 1325 True 1338.00 1338 84.92800 1007 2328 1 chr5D.!!$R1 1321
4 TraesCS4D01G118500 chr5A 325931515 325933150 1635 False 1319.00 1319 81.43700 677 2328 1 chr5A.!!$F1 1651
5 TraesCS4D01G118500 chr5B 275033223 275034825 1602 False 1253.00 1253 80.93200 677 2319 1 chr5B.!!$F2 1642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 586 0.465097 CACCATGTCCCTGATCCTGC 60.465 60.0 0.00 0.0 0.0 4.85 F
1488 1548 0.248621 CGGATTTTGGATTGAGCGCC 60.249 55.0 2.29 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1807 1.289160 TTGGGGTCCAGGATCTTGAG 58.711 55.000 6.37 0.0 33.81 3.02 R
2567 2670 2.703416 TCTACTGTGAATGCTTGGCAG 58.297 47.619 0.00 0.0 43.65 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.537188 GGGCGAATCACTGGAGAAGA 59.463 55.000 0.00 0.00 0.00 2.87
46 47 5.581479 GGAGAAGAAATTCTTTCCCGTCTAC 59.419 44.000 9.84 0.00 36.73 2.59
101 102 0.806241 TTTTAATTGTCGGCGAGGCC 59.194 50.000 11.20 0.00 46.75 5.19
148 150 0.758734 CCTGCGGTTGGATGGATCTA 59.241 55.000 0.00 0.00 0.00 1.98
173 175 5.574443 GGAATTTGCAAGTTGTTATGCTCTC 59.426 40.000 12.36 0.00 42.97 3.20
189 195 5.441718 TGCTCTCAGTTTTAGGATTGGAT 57.558 39.130 0.00 0.00 0.00 3.41
190 196 5.188434 TGCTCTCAGTTTTAGGATTGGATG 58.812 41.667 0.00 0.00 0.00 3.51
191 197 4.578105 GCTCTCAGTTTTAGGATTGGATGG 59.422 45.833 0.00 0.00 0.00 3.51
192 198 5.630069 GCTCTCAGTTTTAGGATTGGATGGA 60.630 44.000 0.00 0.00 0.00 3.41
223 229 5.119125 GCGCAATTCTCTGCAAAATTAAACT 59.881 36.000 0.30 0.00 42.77 2.66
332 343 0.544697 TCCCCAAGCGGTAAAGATCC 59.455 55.000 0.00 0.00 0.00 3.36
336 347 2.555199 CCAAGCGGTAAAGATCCAGAG 58.445 52.381 0.00 0.00 0.00 3.35
337 348 2.168521 CCAAGCGGTAAAGATCCAGAGA 59.831 50.000 0.00 0.00 0.00 3.10
371 382 5.431765 TGCTTCTGAACTCTGACTTTTCTT 58.568 37.500 0.00 0.00 0.00 2.52
426 446 7.995488 AGTATGCAGCCTTGATTCTAAAGTAAT 59.005 33.333 0.00 0.00 0.00 1.89
427 447 9.273016 GTATGCAGCCTTGATTCTAAAGTAATA 57.727 33.333 0.00 0.00 0.00 0.98
428 448 8.752005 ATGCAGCCTTGATTCTAAAGTAATAA 57.248 30.769 0.00 0.00 0.00 1.40
429 449 8.752005 TGCAGCCTTGATTCTAAAGTAATAAT 57.248 30.769 0.00 0.00 0.00 1.28
531 586 0.465097 CACCATGTCCCTGATCCTGC 60.465 60.000 0.00 0.00 0.00 4.85
558 614 8.066595 CAGATTGTTTCCTCTAAAGATTATGCG 58.933 37.037 0.00 0.00 0.00 4.73
564 620 8.831550 GTTTCCTCTAAAGATTATGCGAGAATT 58.168 33.333 0.00 0.00 0.00 2.17
565 621 8.964476 TTCCTCTAAAGATTATGCGAGAATTT 57.036 30.769 0.00 0.00 0.00 1.82
567 623 9.698309 TCCTCTAAAGATTATGCGAGAATTTAG 57.302 33.333 0.00 0.00 32.60 1.85
591 647 8.273780 AGTTTGATTCACCATTCTTCTGTATC 57.726 34.615 0.00 0.00 0.00 2.24
595 651 6.385176 TGATTCACCATTCTTCTGTATCCTCT 59.615 38.462 0.00 0.00 0.00 3.69
602 658 7.839705 ACCATTCTTCTGTATCCTCTAGTTGTA 59.160 37.037 0.00 0.00 0.00 2.41
652 708 7.391148 TTTCTTCAGTAATCCATACAAAGGC 57.609 36.000 0.00 0.00 36.94 4.35
774 830 5.619625 AGATGTGCTTGCTTAGAAGAAAC 57.380 39.130 0.00 0.00 0.00 2.78
785 841 2.622064 AGAAGAAACTTCACCTGCGT 57.378 45.000 12.86 0.00 0.00 5.24
802 858 1.261619 GCGTGATAAAGGAGATTGCCG 59.738 52.381 0.00 0.00 0.00 5.69
863 919 3.259876 AGCAACCATCTTGTTTGCATCAT 59.740 39.130 11.50 0.00 0.00 2.45
914 970 5.065218 ACAAAGACATGAGAGTGTTGTTCAC 59.935 40.000 0.00 0.00 46.46 3.18
1013 1073 2.989166 GTGGTTTTATGCAGCTTGAAGC 59.011 45.455 9.59 9.59 42.84 3.86
1488 1548 0.248621 CGGATTTTGGATTGAGCGCC 60.249 55.000 2.29 0.00 0.00 6.53
1747 1807 2.031333 CACAAACTCCAGAAGCTCTTGC 60.031 50.000 0.00 0.00 40.05 4.01
1874 1934 3.843027 AGAACTCCCAGTGAGAATGTCAT 59.157 43.478 0.00 0.00 44.42 3.06
1941 2016 3.114606 TCATGAAGATGTGAAGCCCCTA 58.885 45.455 0.00 0.00 0.00 3.53
2065 2140 2.224606 CTTCAGACAAGCCTGCTTCAA 58.775 47.619 0.42 0.00 33.42 2.69
2178 2253 1.559682 GAGGGAAGGAATGGTGCTGTA 59.440 52.381 0.00 0.00 0.00 2.74
2429 2508 4.455124 GAACGATCCTATTTTACATGCGC 58.545 43.478 0.00 0.00 0.00 6.09
2483 2563 1.271543 TGAGGTGAGGCATTCTGTTGG 60.272 52.381 0.00 0.00 0.00 3.77
2567 2670 4.877823 TGTCATTGTCCTGTCATAATGCTC 59.122 41.667 0.00 0.00 32.14 4.26
2614 2717 4.108570 TCCCACTACACCTCCATAAACAT 58.891 43.478 0.00 0.00 0.00 2.71
2793 2899 6.115446 TCTCCCATCAGCTAGTTTAATGTTG 58.885 40.000 0.00 0.00 0.00 3.33
2823 2973 4.336889 TCGGGAGCTGAATATTAACAGG 57.663 45.455 0.00 0.00 35.05 4.00
2826 2976 3.149981 GGAGCTGAATATTAACAGGGGC 58.850 50.000 0.00 0.00 35.05 5.80
2868 3018 3.492102 AACCAATGCACAGACTGTACT 57.508 42.857 8.02 0.00 0.00 2.73
2914 3308 1.688735 TGCCTATTCAGTCTGATCCGG 59.311 52.381 2.68 0.00 0.00 5.14
2950 3344 7.625828 AAAACTGGTAATAGATAGCCAACAC 57.374 36.000 0.00 0.00 0.00 3.32
2952 3346 6.163135 ACTGGTAATAGATAGCCAACACTC 57.837 41.667 0.00 0.00 0.00 3.51
2982 3376 0.106708 TGCAGCTTCACCGAGAAAGT 59.893 50.000 0.00 0.00 35.40 2.66
3060 3455 9.939802 AGTGAAGTTATCGGTAAAGAAAATACT 57.060 29.630 0.00 0.00 0.00 2.12
3062 3457 9.374838 TGAAGTTATCGGTAAAGAAAATACTCC 57.625 33.333 0.00 0.00 0.00 3.85
3063 3458 8.728337 AAGTTATCGGTAAAGAAAATACTCCC 57.272 34.615 0.00 0.00 0.00 4.30
3064 3459 8.087303 AGTTATCGGTAAAGAAAATACTCCCT 57.913 34.615 0.00 0.00 0.00 4.20
3065 3460 8.202811 AGTTATCGGTAAAGAAAATACTCCCTC 58.797 37.037 0.00 0.00 0.00 4.30
3066 3461 5.349061 TCGGTAAAGAAAATACTCCCTCC 57.651 43.478 0.00 0.00 0.00 4.30
3067 3462 4.117685 CGGTAAAGAAAATACTCCCTCCG 58.882 47.826 0.00 0.00 0.00 4.63
3068 3463 4.382362 CGGTAAAGAAAATACTCCCTCCGT 60.382 45.833 0.00 0.00 0.00 4.69
3069 3464 5.163519 CGGTAAAGAAAATACTCCCTCCGTA 60.164 44.000 0.00 0.00 0.00 4.02
3070 3465 6.627953 CGGTAAAGAAAATACTCCCTCCGTAA 60.628 42.308 0.00 0.00 0.00 3.18
3071 3466 7.105588 GGTAAAGAAAATACTCCCTCCGTAAA 58.894 38.462 0.00 0.00 0.00 2.01
3072 3467 7.279536 GGTAAAGAAAATACTCCCTCCGTAAAG 59.720 40.741 0.00 0.00 0.00 1.85
3073 3468 6.370186 AAGAAAATACTCCCTCCGTAAAGT 57.630 37.500 0.00 0.00 0.00 2.66
3074 3469 7.486407 AAGAAAATACTCCCTCCGTAAAGTA 57.514 36.000 0.00 0.00 0.00 2.24
3075 3470 7.486407 AGAAAATACTCCCTCCGTAAAGTAA 57.514 36.000 0.00 0.00 0.00 2.24
3076 3471 8.087303 AGAAAATACTCCCTCCGTAAAGTAAT 57.913 34.615 0.00 0.00 0.00 1.89
3077 3472 9.205513 AGAAAATACTCCCTCCGTAAAGTAATA 57.794 33.333 0.00 0.00 0.00 0.98
3078 3473 9.993454 GAAAATACTCCCTCCGTAAAGTAATAT 57.007 33.333 0.00 0.00 0.00 1.28
3083 3478 8.406730 ACTCCCTCCGTAAAGTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3084 3479 8.003629 ACTCCCTCCGTAAAGTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
3085 3480 8.174733 TCCCTCCGTAAAGTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
3086 3481 7.781693 TCCCTCCGTAAAGTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
3087 3482 8.419442 CCCTCCGTAAAGTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
3088 3483 9.813446 CCTCCGTAAAGTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
3118 3513 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
3119 3514 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
3120 3515 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
3121 3516 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
3136 3531 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3137 3532 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3138 3533 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3139 3534 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3140 3535 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3209 3604 7.502226 ACAAAATATCTGAACTCCACTTGTGAA 59.498 33.333 1.89 0.00 0.00 3.18
3214 3609 6.861065 TCTGAACTCCACTTGTGAATAAAC 57.139 37.500 1.89 0.00 0.00 2.01
3241 3636 0.991920 ATTGTCACTACCACAGGGGG 59.008 55.000 0.00 0.00 42.91 5.40
3267 3662 4.825085 GGTCCAACATCCAAGTGTTTCTTA 59.175 41.667 0.00 0.00 40.17 2.10
3279 3675 7.013274 TCCAAGTGTTTCTTATTCACTTTCCTG 59.987 37.037 6.99 0.00 45.97 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.286291 ACTCTGGTAGACGGGAAAGAATTT 59.714 41.667 0.00 0.00 43.98 1.82
46 47 2.947652 CTCATATGTGCCCAAACTCTGG 59.052 50.000 1.90 0.00 45.97 3.86
148 150 5.244626 AGAGCATAACAACTTGCAAATTCCT 59.755 36.000 0.00 0.00 41.35 3.36
173 175 5.116084 TCCTCCATCCAATCCTAAAACTG 57.884 43.478 0.00 0.00 0.00 3.16
189 195 2.435805 AGAGAATTGCGCTATTCCTCCA 59.564 45.455 31.61 0.00 35.56 3.86
190 196 2.805099 CAGAGAATTGCGCTATTCCTCC 59.195 50.000 31.61 23.04 35.56 4.30
191 197 2.222911 GCAGAGAATTGCGCTATTCCTC 59.777 50.000 31.61 26.69 35.56 3.71
192 198 2.216898 GCAGAGAATTGCGCTATTCCT 58.783 47.619 31.61 25.72 35.56 3.36
223 229 6.440010 TCATCATGGAGAAAAAGGCCAAATAA 59.560 34.615 5.01 0.00 34.95 1.40
240 246 4.168014 CACGGTCAACAAATTCATCATGG 58.832 43.478 0.00 0.00 0.00 3.66
321 332 3.786635 CTGGTTCTCTGGATCTTTACCG 58.213 50.000 0.00 0.00 0.00 4.02
332 343 2.157421 GCAACTCGCTGGTTCTCTG 58.843 57.895 0.00 0.00 37.77 3.35
371 382 7.880713 TGCAGAAAAGTGTAAACATAGGTATGA 59.119 33.333 3.96 0.00 37.15 2.15
452 472 5.393678 GGCAAACTAGAACCAACAGAAAACA 60.394 40.000 0.00 0.00 0.00 2.83
464 484 3.748021 GCACACGGCAAACTAGAAC 57.252 52.632 0.00 0.00 43.97 3.01
531 586 8.348507 GCATAATCTTTAGAGGAAACAATCTGG 58.651 37.037 0.00 0.00 0.00 3.86
564 620 9.739276 ATACAGAAGAATGGTGAATCAAACTAA 57.261 29.630 0.00 0.00 0.00 2.24
565 621 9.383519 GATACAGAAGAATGGTGAATCAAACTA 57.616 33.333 0.00 0.00 0.00 2.24
567 623 7.337942 AGGATACAGAAGAATGGTGAATCAAAC 59.662 37.037 0.00 0.00 41.41 2.93
572 628 6.821616 AGAGGATACAGAAGAATGGTGAAT 57.178 37.500 0.00 0.00 41.41 2.57
689 745 7.765695 TGGAGTTCTCTGCAAATAAGAAAAT 57.234 32.000 0.00 0.00 38.99 1.82
785 841 3.118261 AGAAGCGGCAATCTCCTTTATCA 60.118 43.478 1.45 0.00 0.00 2.15
863 919 2.660572 GGAGTCTAGATGGTGCAGAGA 58.339 52.381 0.00 0.00 0.00 3.10
914 970 2.834549 AGGTAGTCTTGATCCACCACAG 59.165 50.000 0.00 0.00 0.00 3.66
1013 1073 1.180029 CTTCCCTCTGTTTGCCATGG 58.820 55.000 7.63 7.63 0.00 3.66
1488 1548 3.131709 TGCCTCTTTGACTCTGAAAGG 57.868 47.619 0.00 0.00 32.26 3.11
1747 1807 1.289160 TTGGGGTCCAGGATCTTGAG 58.711 55.000 6.37 0.00 33.81 3.02
1874 1934 2.355108 GCTGTAGGAGGAGCATTTGTGA 60.355 50.000 0.00 0.00 35.15 3.58
1941 2016 5.806654 AGGCATTTAAGTTTGTCACCATT 57.193 34.783 0.00 0.00 0.00 3.16
2065 2140 1.489481 TCCAGCTTCGAGATGATGGT 58.511 50.000 18.48 0.00 41.21 3.55
2178 2253 4.950475 TCGAAGATCTCCATGTCTAACTGT 59.050 41.667 0.00 0.00 0.00 3.55
2483 2563 3.149196 TCTCAACTTCTCAACAATGCCC 58.851 45.455 0.00 0.00 0.00 5.36
2549 2629 3.273434 GCAGAGCATTATGACAGGACAA 58.727 45.455 0.00 0.00 0.00 3.18
2567 2670 2.703416 TCTACTGTGAATGCTTGGCAG 58.297 47.619 0.00 0.00 43.65 4.85
2579 2682 3.258372 TGTAGTGGGAGCTTTCTACTGTG 59.742 47.826 14.27 0.00 35.31 3.66
2793 2899 9.871238 TTAATATTCAGCTCCCGATAAGTAATC 57.129 33.333 0.00 0.00 0.00 1.75
2826 2976 2.955477 TGAGTATGACAGCTGAGCAG 57.045 50.000 23.35 0.00 0.00 4.24
2868 3018 7.996644 ACCACTTGTTGATTTTCTACTTCCTTA 59.003 33.333 0.00 0.00 0.00 2.69
3022 3417 6.632834 CCGATAACTTCACTTTCTGTTGTTTG 59.367 38.462 0.00 0.00 0.00 2.93
3059 3454 8.298140 CACTCTTATATTACTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
3060 3455 7.781693 ACACTCTTATATTACTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
3061 3456 7.949434 ACACTCTTATATTACTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
3062 3457 9.813446 AAACACTCTTATATTACTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
3094 3489 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
3095 3490 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
3110 3505 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3111 3506 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3112 3507 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3113 3508 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3114 3509 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3125 3520 7.988028 GCTTGATATTTACTCCCTCTGTAAACT 59.012 37.037 0.00 0.00 40.98 2.66
3126 3521 7.042658 CGCTTGATATTTACTCCCTCTGTAAAC 60.043 40.741 0.00 0.00 40.98 2.01
3127 3522 6.984474 CGCTTGATATTTACTCCCTCTGTAAA 59.016 38.462 0.00 0.00 41.94 2.01
3128 3523 6.097839 ACGCTTGATATTTACTCCCTCTGTAA 59.902 38.462 0.00 0.00 0.00 2.41
3129 3524 5.597182 ACGCTTGATATTTACTCCCTCTGTA 59.403 40.000 0.00 0.00 0.00 2.74
3130 3525 4.406003 ACGCTTGATATTTACTCCCTCTGT 59.594 41.667 0.00 0.00 0.00 3.41
3131 3526 4.950050 ACGCTTGATATTTACTCCCTCTG 58.050 43.478 0.00 0.00 0.00 3.35
3132 3527 6.919775 ATACGCTTGATATTTACTCCCTCT 57.080 37.500 0.00 0.00 0.00 3.69
3133 3528 9.654663 ATTTATACGCTTGATATTTACTCCCTC 57.345 33.333 0.00 0.00 0.00 4.30
3214 3609 6.149474 CCCTGTGGTAGTGACAATTTCTTTAG 59.851 42.308 0.00 0.00 0.00 1.85
3241 3636 3.418684 ACACTTGGATGTTGGACCTAC 57.581 47.619 0.00 0.00 0.00 3.18
3267 3662 4.952335 GGATGGTTGATCAGGAAAGTGAAT 59.048 41.667 0.00 0.00 31.91 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.