Multiple sequence alignment - TraesCS4D01G118300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G118300 chr4D 100.000 4960 0 0 1 4960 98930210 98935169 0.000000e+00 9160.0
1 TraesCS4D01G118300 chr4D 89.123 285 26 2 2289 2568 98932087 98932371 2.840000e-92 350.0
2 TraesCS4D01G118300 chr4D 89.123 285 26 2 1878 2162 98932498 98932777 2.840000e-92 350.0
3 TraesCS4D01G118300 chr4D 99.315 146 1 0 2631 2776 455759591 455759736 1.060000e-66 265.0
4 TraesCS4D01G118300 chr4D 100.000 36 0 0 4453 4488 98934626 98934661 3.200000e-07 67.6
5 TraesCS4D01G118300 chr4D 100.000 36 0 0 4417 4452 98934662 98934697 3.200000e-07 67.6
6 TraesCS4D01G118300 chr4A 91.283 2650 152 37 1 2634 477036358 477033772 0.000000e+00 3541.0
7 TraesCS4D01G118300 chr4A 93.499 1046 50 9 3373 4414 477033209 477032178 0.000000e+00 1539.0
8 TraesCS4D01G118300 chr4A 93.418 395 24 2 2946 3340 477033663 477033271 7.150000e-163 584.0
9 TraesCS4D01G118300 chr4A 90.398 427 25 7 4537 4959 477031754 477031340 9.390000e-152 547.0
10 TraesCS4D01G118300 chr4A 88.235 289 29 2 1878 2166 477034118 477033835 1.710000e-89 340.0
11 TraesCS4D01G118300 chr4A 87.762 286 29 3 2289 2568 477034530 477034245 3.700000e-86 329.0
12 TraesCS4D01G118300 chr4A 76.860 363 54 20 380 713 73941331 73940970 1.420000e-40 178.0
13 TraesCS4D01G118300 chr4A 93.443 122 1 2 2772 2893 477033776 477033662 1.840000e-39 174.0
14 TraesCS4D01G118300 chr4A 90.654 107 8 2 2855 2960 157206935 157206830 1.860000e-29 141.0
15 TraesCS4D01G118300 chr4A 79.861 144 21 6 628 766 108747304 108747444 1.140000e-16 99.0
16 TraesCS4D01G118300 chr4B 88.257 1354 79 35 826 2163 140889351 140890640 0.000000e+00 1546.0
17 TraesCS4D01G118300 chr4B 96.109 771 27 3 3545 4314 140891818 140892586 0.000000e+00 1254.0
18 TraesCS4D01G118300 chr4B 93.593 359 21 2 2983 3340 140891151 140891508 7.310000e-148 534.0
19 TraesCS4D01G118300 chr4B 79.026 739 108 28 5 713 140881496 140882217 3.500000e-126 462.0
20 TraesCS4D01G118300 chr4B 88.323 334 16 12 4630 4960 140892612 140892925 3.620000e-101 379.0
21 TraesCS4D01G118300 chr4B 92.661 218 15 1 3331 3548 140891542 140891758 3.730000e-81 313.0
22 TraesCS4D01G118300 chr6D 77.885 728 96 27 1 680 361545810 361545100 4.650000e-105 392.0
23 TraesCS4D01G118300 chr6D 88.073 109 7 5 2855 2960 413351810 413351705 1.870000e-24 124.0
24 TraesCS4D01G118300 chr1D 76.694 738 114 35 1 699 372522062 372522780 1.700000e-94 357.0
25 TraesCS4D01G118300 chr1D 91.667 84 5 1 3179 3262 233793712 233793793 1.130000e-21 115.0
26 TraesCS4D01G118300 chr3B 74.768 753 121 36 3 714 182423577 182422853 1.760000e-69 274.0
27 TraesCS4D01G118300 chr3B 73.429 700 120 29 3 658 581483697 581484374 8.420000e-48 202.0
28 TraesCS4D01G118300 chr3B 77.895 190 33 9 617 800 150639212 150639398 5.250000e-20 110.0
29 TraesCS4D01G118300 chr3B 85.227 88 11 2 3176 3262 818304684 818304770 6.840000e-14 89.8
30 TraesCS4D01G118300 chr1A 74.697 743 119 35 2 699 471932436 471933154 2.940000e-67 267.0
31 TraesCS4D01G118300 chr1A 83.146 89 12 3 3178 3264 446542896 446542809 1.480000e-10 78.7
32 TraesCS4D01G118300 chr7D 77.149 477 87 13 1 475 53536638 53536182 1.770000e-64 257.0
33 TraesCS4D01G118300 chr7D 87.619 105 11 2 2855 2958 127218888 127218785 2.430000e-23 121.0
34 TraesCS4D01G118300 chr7D 92.857 56 4 0 3363 3418 622164259 622164204 1.140000e-11 82.4
35 TraesCS4D01G118300 chr7D 82.222 90 11 4 3179 3266 549514217 549514131 6.890000e-09 73.1
36 TraesCS4D01G118300 chr2D 75.038 661 105 35 89 699 169022767 169023417 8.240000e-63 252.0
37 TraesCS4D01G118300 chr2D 88.785 107 10 2 2855 2960 642014019 642013914 4.030000e-26 130.0
38 TraesCS4D01G118300 chr2D 86.111 108 13 2 2855 2961 441576684 441576790 1.130000e-21 115.0
39 TraesCS4D01G118300 chr2D 81.818 88 13 2 3178 3263 32188094 32188008 2.480000e-08 71.3
40 TraesCS4D01G118300 chr5A 96.324 136 4 1 2645 2780 359737170 359737036 6.460000e-54 222.0
41 TraesCS4D01G118300 chr5A 90.351 114 8 3 1416 1528 325952865 325952754 4.000000e-31 147.0
42 TraesCS4D01G118300 chr5A 76.923 260 56 4 27 283 546663074 546663332 1.440000e-30 145.0
43 TraesCS4D01G118300 chr5A 84.354 147 23 0 2629 2775 559089242 559089388 1.440000e-30 145.0
44 TraesCS4D01G118300 chr5A 94.737 57 3 0 3361 3417 649199439 649199383 6.840000e-14 89.8
45 TraesCS4D01G118300 chr5A 92.982 57 4 0 3361 3417 649199412 649199468 3.180000e-12 84.2
46 TraesCS4D01G118300 chr5A 88.060 67 7 1 3361 3427 405019527 405019462 1.480000e-10 78.7
47 TraesCS4D01G118300 chr5A 85.915 71 9 1 3363 3432 195632218 195632288 1.910000e-09 75.0
48 TraesCS4D01G118300 chr2B 76.543 405 78 13 293 682 783239273 783238871 6.510000e-49 206.0
49 TraesCS4D01G118300 chr2B 87.850 107 11 2 2855 2960 497025999 497025894 1.870000e-24 124.0
50 TraesCS4D01G118300 chr2B 88.506 87 9 1 3176 3262 557230393 557230478 2.440000e-18 104.0
51 TraesCS4D01G118300 chr6B 75.161 467 95 12 18 474 626291647 626292102 3.030000e-47 200.0
52 TraesCS4D01G118300 chr6B 72.117 581 121 25 141 713 103155909 103155362 2.410000e-28 137.0
53 TraesCS4D01G118300 chr6B 75.956 183 36 6 625 800 621051202 621051383 2.460000e-13 87.9
54 TraesCS4D01G118300 chr6B 88.571 70 7 1 4630 4698 688780647 688780578 3.180000e-12 84.2
55 TraesCS4D01G118300 chr6B 87.097 62 8 0 3278 3339 39537370 39537309 2.480000e-08 71.3
56 TraesCS4D01G118300 chr7A 88.961 154 15 2 1 153 613631086 613631238 6.550000e-44 189.0
57 TraesCS4D01G118300 chr7A 92.982 57 4 0 3361 3417 2578385 2578441 3.180000e-12 84.2
58 TraesCS4D01G118300 chr6A 90.278 144 13 1 2633 2775 28665335 28665192 2.360000e-43 187.0
59 TraesCS4D01G118300 chr3D 72.583 693 143 31 4 682 604612016 604612675 3.050000e-42 183.0
60 TraesCS4D01G118300 chr5B 87.963 108 9 4 2855 2960 711999371 711999266 1.870000e-24 124.0
61 TraesCS4D01G118300 chr5B 94.340 53 3 0 3279 3331 35575799 35575851 1.140000e-11 82.4
62 TraesCS4D01G118300 chr7B 85.965 114 14 2 2855 2967 383714632 383714744 2.430000e-23 121.0
63 TraesCS4D01G118300 chr7B 86.239 109 11 4 2855 2961 456920433 456920327 1.130000e-21 115.0
64 TraesCS4D01G118300 chr7B 72.650 351 61 26 438 766 198534056 198534393 3.180000e-12 84.2
65 TraesCS4D01G118300 chr3A 83.696 92 7 6 3178 3265 12862258 12862171 4.120000e-11 80.5
66 TraesCS4D01G118300 chr1B 88.060 67 6 2 3363 3428 296488025 296488090 1.480000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G118300 chr4D 98930210 98935169 4959 False 1999.040000 9160 95.649200 1 4960 5 chr4D.!!$F2 4959
1 TraesCS4D01G118300 chr4A 477031340 477036358 5018 True 1007.714286 3541 91.148286 1 4959 7 chr4A.!!$R3 4958
2 TraesCS4D01G118300 chr4B 140889351 140892925 3574 False 805.200000 1546 91.788600 826 4960 5 chr4B.!!$F2 4134
3 TraesCS4D01G118300 chr4B 140881496 140882217 721 False 462.000000 462 79.026000 5 713 1 chr4B.!!$F1 708
4 TraesCS4D01G118300 chr6D 361545100 361545810 710 True 392.000000 392 77.885000 1 680 1 chr6D.!!$R1 679
5 TraesCS4D01G118300 chr1D 372522062 372522780 718 False 357.000000 357 76.694000 1 699 1 chr1D.!!$F2 698
6 TraesCS4D01G118300 chr3B 182422853 182423577 724 True 274.000000 274 74.768000 3 714 1 chr3B.!!$R1 711
7 TraesCS4D01G118300 chr3B 581483697 581484374 677 False 202.000000 202 73.429000 3 658 1 chr3B.!!$F2 655
8 TraesCS4D01G118300 chr1A 471932436 471933154 718 False 267.000000 267 74.697000 2 699 1 chr1A.!!$F1 697
9 TraesCS4D01G118300 chr2D 169022767 169023417 650 False 252.000000 252 75.038000 89 699 1 chr2D.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 815 0.180406 ACCACTTCCCGTATCCATGC 59.820 55.0 0.0 0.0 0.00 4.06 F
1684 1778 0.039527 GTCGCAAATTCTTGGCCGTT 60.040 50.0 0.0 0.0 32.76 4.44 F
2692 2796 0.175760 GAGCGGAGTGGCATTCAGTA 59.824 55.0 12.3 0.0 34.64 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2695 2799 0.032615 TATTGGCCGCTCCCCAAATT 60.033 50.0 0.00 0.00 44.80 1.82 R
2703 2807 0.319986 GAGCTACCTATTGGCCGCTC 60.320 60.0 17.02 17.02 45.19 5.03 R
4314 4770 0.111061 AGACAGTTGGGCAGCAATGA 59.889 50.0 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 123 2.124612 TCGAGGGCCGTCGTATCA 60.125 61.111 38.08 22.27 40.93 2.15
179 181 3.309436 TAGTGCAATGCCGGTCGCT 62.309 57.895 1.90 2.38 38.78 4.93
183 185 3.434319 CAATGCCGGTCGCTGCTT 61.434 61.111 1.90 0.00 38.78 3.91
257 261 2.191375 CTCCGCATGGGCACTCAT 59.809 61.111 3.80 0.00 41.24 2.90
258 262 1.447217 CTCCGCATGGGCACTCATA 59.553 57.895 3.80 0.00 41.24 2.15
497 542 2.892425 CCTCCGACGCCATTCTGC 60.892 66.667 0.00 0.00 0.00 4.26
550 603 2.378634 GCAGTAGGGCAGGGACCAT 61.379 63.158 0.00 0.00 29.21 3.55
714 780 8.623903 AGTTCGCATTGATGTTGAAATGTATAT 58.376 29.630 0.00 0.00 36.39 0.86
715 781 9.877137 GTTCGCATTGATGTTGAAATGTATATA 57.123 29.630 0.00 0.00 36.39 0.86
733 799 8.664211 TGTATATATGCAACGTTAAATGACCA 57.336 30.769 0.00 0.00 0.00 4.02
734 800 8.552865 TGTATATATGCAACGTTAAATGACCAC 58.447 33.333 0.00 0.00 0.00 4.16
737 803 4.217754 TGCAACGTTAAATGACCACTTC 57.782 40.909 0.00 0.00 0.00 3.01
738 804 3.003897 TGCAACGTTAAATGACCACTTCC 59.996 43.478 0.00 0.00 0.00 3.46
740 806 2.419667 ACGTTAAATGACCACTTCCCG 58.580 47.619 0.00 0.00 0.00 5.14
741 807 2.224354 ACGTTAAATGACCACTTCCCGT 60.224 45.455 0.00 0.00 0.00 5.28
744 810 4.269363 CGTTAAATGACCACTTCCCGTATC 59.731 45.833 0.00 0.00 0.00 2.24
749 815 0.180406 ACCACTTCCCGTATCCATGC 59.820 55.000 0.00 0.00 0.00 4.06
750 816 0.535102 CCACTTCCCGTATCCATGCC 60.535 60.000 0.00 0.00 0.00 4.40
753 819 3.469863 TTCCCGTATCCATGCCCGC 62.470 63.158 0.00 0.00 0.00 6.13
760 826 1.532604 TATCCATGCCCGCGGACTAG 61.533 60.000 30.73 11.36 33.05 2.57
761 827 3.849951 CCATGCCCGCGGACTAGT 61.850 66.667 30.73 2.13 0.00 2.57
762 828 2.279517 CATGCCCGCGGACTAGTC 60.280 66.667 30.73 14.87 0.00 2.59
763 829 3.537874 ATGCCCGCGGACTAGTCC 61.538 66.667 30.73 29.18 46.18 3.85
772 838 3.834799 GACTAGTCCCCGCCGGTG 61.835 72.222 12.13 8.42 0.00 4.94
773 839 4.371417 ACTAGTCCCCGCCGGTGA 62.371 66.667 18.79 0.00 0.00 4.02
774 840 3.072468 CTAGTCCCCGCCGGTGAA 61.072 66.667 18.79 0.00 0.00 3.18
775 841 2.364579 TAGTCCCCGCCGGTGAAT 60.365 61.111 18.79 0.00 0.00 2.57
776 842 2.644555 CTAGTCCCCGCCGGTGAATG 62.645 65.000 18.79 4.19 0.00 2.67
783 849 2.358247 GCCGGTGAATGGACGTGT 60.358 61.111 1.90 0.00 0.00 4.49
800 866 2.661594 GTGTGAGAAAATTTGCGGGTC 58.338 47.619 0.00 0.00 0.00 4.46
801 867 1.611491 TGTGAGAAAATTTGCGGGTCC 59.389 47.619 0.00 0.00 0.00 4.46
815 881 3.866582 GTCCCGGAGATGGCCCAG 61.867 72.222 0.73 0.00 0.00 4.45
819 885 2.194056 CGGAGATGGCCCAGCAAT 59.806 61.111 0.01 0.00 0.00 3.56
963 1029 5.008118 CGAATTTCTCCTCCTCTTTTATGCC 59.992 44.000 0.00 0.00 0.00 4.40
971 1037 4.082026 CCTCCTCTTTTATGCCCACAAAAG 60.082 45.833 5.62 5.62 41.18 2.27
1018 1093 3.393970 TCTTCCTCCTGCCGCCTG 61.394 66.667 0.00 0.00 0.00 4.85
1112 1187 1.154197 GACCAGAGTTGTTTACCGCC 58.846 55.000 0.00 0.00 0.00 6.13
1280 1367 2.366167 CTCCTCCTCCTCCTGCCA 59.634 66.667 0.00 0.00 0.00 4.92
1288 1375 1.739750 CTCCTCCTGCCATCCCTAAT 58.260 55.000 0.00 0.00 0.00 1.73
1289 1376 1.627834 CTCCTCCTGCCATCCCTAATC 59.372 57.143 0.00 0.00 0.00 1.75
1290 1377 0.695347 CCTCCTGCCATCCCTAATCC 59.305 60.000 0.00 0.00 0.00 3.01
1291 1378 0.695347 CTCCTGCCATCCCTAATCCC 59.305 60.000 0.00 0.00 0.00 3.85
1292 1379 0.772124 TCCTGCCATCCCTAATCCCC 60.772 60.000 0.00 0.00 0.00 4.81
1293 1380 1.770324 CTGCCATCCCTAATCCCCC 59.230 63.158 0.00 0.00 0.00 5.40
1294 1381 0.773700 CTGCCATCCCTAATCCCCCT 60.774 60.000 0.00 0.00 0.00 4.79
1295 1382 0.772124 TGCCATCCCTAATCCCCCTC 60.772 60.000 0.00 0.00 0.00 4.30
1296 1383 1.501654 GCCATCCCTAATCCCCCTCC 61.502 65.000 0.00 0.00 0.00 4.30
1297 1384 0.846870 CCATCCCTAATCCCCCTCCC 60.847 65.000 0.00 0.00 0.00 4.30
1298 1385 0.846870 CATCCCTAATCCCCCTCCCC 60.847 65.000 0.00 0.00 0.00 4.81
1299 1386 1.024339 ATCCCTAATCCCCCTCCCCT 61.024 60.000 0.00 0.00 0.00 4.79
1300 1387 1.151788 CCCTAATCCCCCTCCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
1301 1388 1.151788 CCTAATCCCCCTCCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1302 1389 1.151788 CTAATCCCCCTCCCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
1303 1390 2.714809 CTAATCCCCCTCCCCTCCCC 62.715 70.000 0.00 0.00 0.00 4.81
1402 1495 2.777972 CCCGTGCGATCCTCGGTTA 61.778 63.158 17.56 0.00 46.38 2.85
1405 1498 1.001048 CCGTGCGATCCTCGGTTAATA 60.001 52.381 13.33 0.00 43.66 0.98
1406 1499 2.544277 CCGTGCGATCCTCGGTTAATAA 60.544 50.000 13.33 0.00 43.66 1.40
1407 1500 2.470257 CGTGCGATCCTCGGTTAATAAC 59.530 50.000 0.00 0.00 40.84 1.89
1445 1539 1.414181 CCGCTGAGGGTGATACTCATT 59.586 52.381 0.00 0.00 43.43 2.57
1619 1713 1.635487 TCCAAGGTATTGCTCTTGCCT 59.365 47.619 0.00 0.00 39.07 4.75
1620 1714 2.041620 TCCAAGGTATTGCTCTTGCCTT 59.958 45.455 0.00 0.00 39.07 4.35
1621 1715 3.498927 CAAGGTATTGCTCTTGCCTTG 57.501 47.619 13.36 13.36 46.52 3.61
1622 1716 1.467920 AGGTATTGCTCTTGCCTTGC 58.532 50.000 0.00 0.00 38.71 4.01
1623 1717 1.005215 AGGTATTGCTCTTGCCTTGCT 59.995 47.619 0.00 0.00 38.71 3.91
1624 1718 1.133790 GGTATTGCTCTTGCCTTGCTG 59.866 52.381 0.00 0.00 38.71 4.41
1625 1719 0.813184 TATTGCTCTTGCCTTGCTGC 59.187 50.000 0.00 0.00 38.71 5.25
1626 1720 0.898789 ATTGCTCTTGCCTTGCTGCT 60.899 50.000 0.00 0.00 38.71 4.24
1627 1721 1.802337 TTGCTCTTGCCTTGCTGCTG 61.802 55.000 0.00 0.00 38.71 4.41
1628 1722 2.567049 CTCTTGCCTTGCTGCTGC 59.433 61.111 8.89 8.89 40.20 5.25
1629 1723 2.987547 TCTTGCCTTGCTGCTGCC 60.988 61.111 13.47 0.00 38.71 4.85
1630 1724 2.989824 CTTGCCTTGCTGCTGCCT 60.990 61.111 13.47 0.00 38.71 4.75
1645 1739 2.560105 GCTGCCTTTTTCCAATCTCAGT 59.440 45.455 0.00 0.00 0.00 3.41
1667 1761 1.383080 CACATTTGCGCAATCGTTGTC 59.617 47.619 25.64 0.00 38.14 3.18
1684 1778 0.039527 GTCGCAAATTCTTGGCCGTT 60.040 50.000 0.00 0.00 32.76 4.44
1734 1828 5.633830 TCTAGGTCTTTGTAACGTACAGG 57.366 43.478 0.00 0.00 40.24 4.00
1756 1850 2.991250 ACAAGCAACGAGATTATGCCT 58.009 42.857 0.00 0.00 40.93 4.75
1828 1922 2.607038 GGACATGCTTCCGTTTTTGACC 60.607 50.000 0.00 0.00 0.00 4.02
1900 1995 6.225318 CGCAATGGGGATTCATAATGATTTT 58.775 36.000 0.00 0.00 0.00 1.82
1961 2056 1.208052 TGATGCTCCCAGACTAACTGC 59.792 52.381 0.00 0.00 44.52 4.40
1965 2060 1.202475 GCTCCCAGACTAACTGCTAGC 60.202 57.143 8.10 8.10 44.52 3.42
2097 2193 2.236766 GATAGCTGCTGGCCATGAATT 58.763 47.619 13.43 0.00 43.05 2.17
2213 2310 1.755179 AGCAACAAGATTATGCCGCT 58.245 45.000 0.00 0.00 40.93 5.52
2234 2331 5.232838 CGCTTAATGAATTGCTGATTTTCCC 59.767 40.000 0.00 0.00 0.00 3.97
2252 2349 3.652055 TCCCATCCAAATTAACCCATGG 58.348 45.455 4.14 4.14 0.00 3.66
2262 2359 3.660970 TTAACCCATGGCATGCTTCTA 57.339 42.857 22.02 7.24 0.00 2.10
2281 2378 5.261209 TCTATTTTTGATCCCCAAATGCG 57.739 39.130 0.00 0.00 43.59 4.73
2307 2404 2.951642 CTGCAACGGGGATTCATAATGT 59.048 45.455 0.00 0.00 0.00 2.71
2317 2414 6.591935 GGGGATTCATAATGTTCTAGTGTCA 58.408 40.000 0.00 0.00 0.00 3.58
2362 2459 0.329261 CTGACTTCTTGATGCCCCCA 59.671 55.000 0.00 0.00 0.00 4.96
2425 2522 6.708054 GCCATAGATAAGTTAGCATCACTGTT 59.292 38.462 0.28 0.00 0.00 3.16
2427 2524 7.712639 CCATAGATAAGTTAGCATCACTGTTGT 59.287 37.037 0.28 0.00 0.00 3.32
2432 2529 6.935741 AAGTTAGCATCACTGTTGTTTACA 57.064 33.333 0.00 0.00 34.95 2.41
2544 2646 3.619038 CGGAGAAAACAGTAAGAGGATGC 59.381 47.826 0.00 0.00 0.00 3.91
2597 2700 7.069826 TGGAATCTTTGAAATTTTCACCAGTCT 59.930 33.333 11.30 3.55 39.87 3.24
2626 2730 3.411446 CAGCATGTGAAGGTTAAGGTCA 58.589 45.455 0.00 0.00 0.00 4.02
2632 2736 5.617528 TGTGAAGGTTAAGGTCACACTAA 57.382 39.130 10.33 0.00 45.02 2.24
2633 2737 5.607477 TGTGAAGGTTAAGGTCACACTAAG 58.393 41.667 10.33 0.00 45.02 2.18
2634 2738 4.995487 GTGAAGGTTAAGGTCACACTAAGG 59.005 45.833 7.79 0.00 41.09 2.69
2635 2739 3.697619 AGGTTAAGGTCACACTAAGGC 57.302 47.619 0.00 0.00 0.00 4.35
2636 2740 3.248888 AGGTTAAGGTCACACTAAGGCT 58.751 45.455 0.00 0.00 0.00 4.58
2637 2741 3.008049 AGGTTAAGGTCACACTAAGGCTG 59.992 47.826 0.00 0.00 0.00 4.85
2638 2742 2.742589 GTTAAGGTCACACTAAGGCTGC 59.257 50.000 0.00 0.00 0.00 5.25
2639 2743 0.320771 AAGGTCACACTAAGGCTGCG 60.321 55.000 0.00 0.00 0.00 5.18
2640 2744 1.004918 GGTCACACTAAGGCTGCGT 60.005 57.895 0.00 0.00 0.00 5.24
2641 2745 0.602905 GGTCACACTAAGGCTGCGTT 60.603 55.000 12.54 12.54 0.00 4.84
2642 2746 0.790814 GTCACACTAAGGCTGCGTTC 59.209 55.000 11.22 0.00 0.00 3.95
2643 2747 0.666274 TCACACTAAGGCTGCGTTCG 60.666 55.000 11.22 7.92 0.00 3.95
2644 2748 1.374252 ACACTAAGGCTGCGTTCGG 60.374 57.895 11.22 8.37 0.00 4.30
2645 2749 1.080093 CACTAAGGCTGCGTTCGGA 60.080 57.895 11.22 0.00 0.00 4.55
2646 2750 0.669318 CACTAAGGCTGCGTTCGGAA 60.669 55.000 11.22 0.00 0.00 4.30
2647 2751 0.249398 ACTAAGGCTGCGTTCGGAAT 59.751 50.000 11.22 0.00 0.00 3.01
2648 2752 0.931005 CTAAGGCTGCGTTCGGAATC 59.069 55.000 11.22 0.00 0.00 2.52
2649 2753 0.461339 TAAGGCTGCGTTCGGAATCC 60.461 55.000 11.22 0.00 0.00 3.01
2650 2754 3.202706 GGCTGCGTTCGGAATCCC 61.203 66.667 0.00 0.00 0.00 3.85
2651 2755 2.125106 GCTGCGTTCGGAATCCCT 60.125 61.111 0.00 0.00 0.00 4.20
2652 2756 2.174319 GCTGCGTTCGGAATCCCTC 61.174 63.158 0.00 0.00 0.00 4.30
2653 2757 1.521681 CTGCGTTCGGAATCCCTCC 60.522 63.158 0.00 0.00 41.40 4.30
2660 2764 3.568578 GGAATCCCTCCGCTCCAT 58.431 61.111 0.00 0.00 33.37 3.41
2661 2765 2.759985 GGAATCCCTCCGCTCCATA 58.240 57.895 0.00 0.00 33.37 2.74
2662 2766 1.056660 GGAATCCCTCCGCTCCATAA 58.943 55.000 0.00 0.00 33.37 1.90
2663 2767 1.270893 GGAATCCCTCCGCTCCATAAC 60.271 57.143 0.00 0.00 33.37 1.89
2664 2768 1.694696 GAATCCCTCCGCTCCATAACT 59.305 52.381 0.00 0.00 0.00 2.24
2665 2769 1.343069 ATCCCTCCGCTCCATAACTC 58.657 55.000 0.00 0.00 0.00 3.01
2666 2770 0.759436 TCCCTCCGCTCCATAACTCC 60.759 60.000 0.00 0.00 0.00 3.85
2667 2771 0.760945 CCCTCCGCTCCATAACTCCT 60.761 60.000 0.00 0.00 0.00 3.69
2668 2772 1.123928 CCTCCGCTCCATAACTCCTT 58.876 55.000 0.00 0.00 0.00 3.36
2669 2773 1.069358 CCTCCGCTCCATAACTCCTTC 59.931 57.143 0.00 0.00 0.00 3.46
2670 2774 0.744874 TCCGCTCCATAACTCCTTCG 59.255 55.000 0.00 0.00 0.00 3.79
2671 2775 0.876342 CCGCTCCATAACTCCTTCGC 60.876 60.000 0.00 0.00 0.00 4.70
2672 2776 1.209275 CGCTCCATAACTCCTTCGCG 61.209 60.000 0.00 0.00 0.00 5.87
2673 2777 0.876342 GCTCCATAACTCCTTCGCGG 60.876 60.000 6.13 0.00 0.00 6.46
2674 2778 0.744874 CTCCATAACTCCTTCGCGGA 59.255 55.000 6.13 0.00 40.30 5.54
2688 2792 2.892425 CGGAGCGGAGTGGCATTC 60.892 66.667 0.66 0.66 34.64 2.67
2689 2793 2.268920 GGAGCGGAGTGGCATTCA 59.731 61.111 12.30 0.00 34.64 2.57
2690 2794 1.817099 GGAGCGGAGTGGCATTCAG 60.817 63.158 12.30 9.01 34.64 3.02
2691 2795 1.078848 GAGCGGAGTGGCATTCAGT 60.079 57.895 12.30 0.00 34.64 3.41
2692 2796 0.175760 GAGCGGAGTGGCATTCAGTA 59.824 55.000 12.30 0.00 34.64 2.74
2693 2797 0.176680 AGCGGAGTGGCATTCAGTAG 59.823 55.000 12.30 1.62 34.64 2.57
2694 2798 0.175760 GCGGAGTGGCATTCAGTAGA 59.824 55.000 12.30 0.00 0.00 2.59
2695 2799 1.405526 GCGGAGTGGCATTCAGTAGAA 60.406 52.381 12.30 0.00 38.31 2.10
2696 2800 2.935238 GCGGAGTGGCATTCAGTAGAAA 60.935 50.000 12.30 0.00 37.29 2.52
2697 2801 3.535561 CGGAGTGGCATTCAGTAGAAAT 58.464 45.455 12.30 0.00 37.29 2.17
2698 2802 3.941483 CGGAGTGGCATTCAGTAGAAATT 59.059 43.478 12.30 0.00 37.29 1.82
2699 2803 4.396166 CGGAGTGGCATTCAGTAGAAATTT 59.604 41.667 12.30 0.00 37.29 1.82
2700 2804 5.644644 GGAGTGGCATTCAGTAGAAATTTG 58.355 41.667 12.30 0.00 37.29 2.32
2701 2805 5.393461 GGAGTGGCATTCAGTAGAAATTTGG 60.393 44.000 12.30 0.00 37.29 3.28
2702 2806 4.463891 AGTGGCATTCAGTAGAAATTTGGG 59.536 41.667 0.00 0.00 37.29 4.12
2703 2807 3.768757 TGGCATTCAGTAGAAATTTGGGG 59.231 43.478 0.00 0.00 37.29 4.96
2704 2808 4.023291 GGCATTCAGTAGAAATTTGGGGA 58.977 43.478 0.00 0.00 37.29 4.81
2705 2809 4.098501 GGCATTCAGTAGAAATTTGGGGAG 59.901 45.833 0.00 0.00 37.29 4.30
2706 2810 4.440663 GCATTCAGTAGAAATTTGGGGAGC 60.441 45.833 0.00 0.00 37.29 4.70
2707 2811 2.985896 TCAGTAGAAATTTGGGGAGCG 58.014 47.619 0.00 0.00 0.00 5.03
2708 2812 2.017049 CAGTAGAAATTTGGGGAGCGG 58.983 52.381 0.00 0.00 0.00 5.52
2709 2813 0.738975 GTAGAAATTTGGGGAGCGGC 59.261 55.000 0.00 0.00 0.00 6.53
2710 2814 0.395173 TAGAAATTTGGGGAGCGGCC 60.395 55.000 0.00 0.00 0.00 6.13
2711 2815 1.981853 GAAATTTGGGGAGCGGCCA 60.982 57.895 2.24 0.00 38.95 5.36
2712 2816 1.535202 AAATTTGGGGAGCGGCCAA 60.535 52.632 2.24 0.00 38.95 4.52
2713 2817 0.909133 AAATTTGGGGAGCGGCCAAT 60.909 50.000 2.24 0.00 38.95 3.16
2714 2818 0.032615 AATTTGGGGAGCGGCCAATA 60.033 50.000 2.24 0.00 38.95 1.90
2715 2819 0.468029 ATTTGGGGAGCGGCCAATAG 60.468 55.000 2.24 0.00 38.95 1.73
2716 2820 2.566111 TTTGGGGAGCGGCCAATAGG 62.566 60.000 2.24 0.00 38.95 2.57
2717 2821 3.489513 GGGGAGCGGCCAATAGGT 61.490 66.667 2.24 0.00 38.95 3.08
2718 2822 2.144738 GGGGAGCGGCCAATAGGTA 61.145 63.158 2.24 0.00 38.95 3.08
2719 2823 1.371558 GGGAGCGGCCAATAGGTAG 59.628 63.158 2.24 0.00 38.95 3.18
2720 2824 1.301795 GGAGCGGCCAATAGGTAGC 60.302 63.158 2.24 0.00 38.91 3.58
2721 2825 1.749033 GAGCGGCCAATAGGTAGCT 59.251 57.895 2.24 0.00 46.88 3.32
2722 2826 1.749033 AGCGGCCAATAGGTAGCTC 59.251 57.895 2.24 0.00 42.99 4.09
2723 2827 1.301795 GCGGCCAATAGGTAGCTCC 60.302 63.158 2.24 0.00 36.79 4.70
2724 2828 1.006102 CGGCCAATAGGTAGCTCCG 60.006 63.158 2.24 0.49 41.99 4.63
2725 2829 1.301795 GGCCAATAGGTAGCTCCGC 60.302 63.158 0.00 0.00 41.99 5.54
2726 2830 1.664965 GCCAATAGGTAGCTCCGCG 60.665 63.158 0.00 0.00 41.99 6.46
2727 2831 1.664965 CCAATAGGTAGCTCCGCGC 60.665 63.158 0.00 0.00 41.99 6.86
2728 2832 2.016704 CAATAGGTAGCTCCGCGCG 61.017 63.158 25.67 25.67 45.59 6.86
2729 2833 3.843117 AATAGGTAGCTCCGCGCGC 62.843 63.158 27.36 23.91 45.59 6.86
2744 2848 3.531207 CGCTCCGCTCCCTGATGA 61.531 66.667 0.00 0.00 0.00 2.92
2745 2849 2.903357 GCTCCGCTCCCTGATGAA 59.097 61.111 0.00 0.00 0.00 2.57
2746 2850 1.227497 GCTCCGCTCCCTGATGAAG 60.227 63.158 0.00 0.00 0.00 3.02
2747 2851 1.445095 CTCCGCTCCCTGATGAAGG 59.555 63.158 0.00 0.00 46.94 3.46
2755 2859 2.587194 CTGATGAAGGAGCGGGCG 60.587 66.667 0.00 0.00 0.00 6.13
2756 2860 3.074369 TGATGAAGGAGCGGGCGA 61.074 61.111 0.00 0.00 0.00 5.54
2757 2861 2.374830 CTGATGAAGGAGCGGGCGAT 62.375 60.000 0.00 0.00 0.00 4.58
2758 2862 1.227674 GATGAAGGAGCGGGCGATT 60.228 57.895 0.00 0.00 0.00 3.34
2759 2863 1.502163 GATGAAGGAGCGGGCGATTG 61.502 60.000 0.00 0.00 0.00 2.67
2760 2864 3.577313 GAAGGAGCGGGCGATTGC 61.577 66.667 0.00 0.00 41.71 3.56
2770 2874 2.202349 GCGATTGCCGAACACAGC 60.202 61.111 0.00 0.00 41.76 4.40
2845 2969 3.745797 GCATCCAAACTCATACTCCCTCC 60.746 52.174 0.00 0.00 0.00 4.30
2846 2970 2.108168 TCCAAACTCATACTCCCTCCG 58.892 52.381 0.00 0.00 0.00 4.63
2847 2971 1.473434 CCAAACTCATACTCCCTCCGC 60.473 57.143 0.00 0.00 0.00 5.54
2848 2972 0.831307 AAACTCATACTCCCTCCGCC 59.169 55.000 0.00 0.00 0.00 6.13
2849 2973 1.049289 AACTCATACTCCCTCCGCCC 61.049 60.000 0.00 0.00 0.00 6.13
2850 2974 1.152440 CTCATACTCCCTCCGCCCT 60.152 63.158 0.00 0.00 0.00 5.19
2851 2975 1.457643 TCATACTCCCTCCGCCCTG 60.458 63.158 0.00 0.00 0.00 4.45
2852 2976 1.457643 CATACTCCCTCCGCCCTGA 60.458 63.158 0.00 0.00 0.00 3.86
2857 2981 2.770048 CCCTCCGCCCTGATTCCT 60.770 66.667 0.00 0.00 0.00 3.36
2891 3015 5.765182 GTCACGGAAATGGATAGAAATGGAT 59.235 40.000 0.00 0.00 0.00 3.41
2892 3016 5.764686 TCACGGAAATGGATAGAAATGGATG 59.235 40.000 0.00 0.00 0.00 3.51
2893 3017 5.532406 CACGGAAATGGATAGAAATGGATGT 59.468 40.000 0.00 0.00 0.00 3.06
2894 3018 6.710295 CACGGAAATGGATAGAAATGGATGTA 59.290 38.462 0.00 0.00 0.00 2.29
2896 3020 7.391554 ACGGAAATGGATAGAAATGGATGTATG 59.608 37.037 0.00 0.00 0.00 2.39
2897 3021 7.391554 CGGAAATGGATAGAAATGGATGTATGT 59.608 37.037 0.00 0.00 0.00 2.29
2898 3022 9.739276 GGAAATGGATAGAAATGGATGTATGTA 57.261 33.333 0.00 0.00 0.00 2.29
2902 3026 9.950496 ATGGATAGAAATGGATGTATGTAGAAC 57.050 33.333 0.00 0.00 0.00 3.01
2903 3027 9.159254 TGGATAGAAATGGATGTATGTAGAACT 57.841 33.333 0.00 0.00 0.00 3.01
2932 3056 6.630444 ACATCTAATCACATCCATTTCTGC 57.370 37.500 0.00 0.00 0.00 4.26
2933 3057 6.124340 ACATCTAATCACATCCATTTCTGCA 58.876 36.000 0.00 0.00 0.00 4.41
2934 3058 6.604396 ACATCTAATCACATCCATTTCTGCAA 59.396 34.615 0.00 0.00 0.00 4.08
2935 3059 6.441093 TCTAATCACATCCATTTCTGCAAC 57.559 37.500 0.00 0.00 0.00 4.17
2941 3065 5.534278 TCACATCCATTTCTGCAACAAGTAA 59.466 36.000 0.00 0.00 0.00 2.24
2944 3068 7.062605 CACATCCATTTCTGCAACAAGTAATTC 59.937 37.037 0.00 0.00 0.00 2.17
3015 3358 6.290605 AGCCTACAAATTTGTGCAAATTCTT 58.709 32.000 29.72 13.10 46.76 2.52
3036 3379 5.542635 TCTTACAGTCCTGTTCATAGTGGTT 59.457 40.000 5.10 0.00 41.83 3.67
3037 3380 4.273148 ACAGTCCTGTTCATAGTGGTTC 57.727 45.455 0.00 0.00 41.83 3.62
3117 3460 2.377193 AGGTTGTAGCCACACCCAAATA 59.623 45.455 1.12 0.00 39.65 1.40
3144 3487 5.588240 TGTTGCTCTCATAACGTGGTATAG 58.412 41.667 0.00 0.00 0.00 1.31
3290 3633 2.583024 ACCTATAGTACTCCCTCCGC 57.417 55.000 0.00 0.00 0.00 5.54
3314 3657 7.489160 GCCCCGAATTAATTGTCTTAGATTTT 58.511 34.615 5.17 0.00 0.00 1.82
3343 3686 6.954487 ATACGGATGTATCTAGACACAACA 57.046 37.500 8.14 4.85 36.56 3.33
3344 3687 5.654603 ACGGATGTATCTAGACACAACAA 57.345 39.130 8.14 0.00 30.52 2.83
3345 3688 5.408356 ACGGATGTATCTAGACACAACAAC 58.592 41.667 8.14 3.48 30.52 3.32
3361 3746 4.069304 CAACAACTAATTTGGGACGGAGA 58.931 43.478 0.00 0.00 39.84 3.71
3401 3786 9.658475 TTGAACTAAAATCACGACACTTATTTG 57.342 29.630 0.00 0.00 0.00 2.32
3404 3789 6.938030 ACTAAAATCACGACACTTATTTGGGA 59.062 34.615 0.00 0.00 0.00 4.37
3542 3927 4.463050 TGGAGGGTTGGTAAGTTTCATT 57.537 40.909 0.00 0.00 0.00 2.57
3543 3928 5.586155 TGGAGGGTTGGTAAGTTTCATTA 57.414 39.130 0.00 0.00 0.00 1.90
3577 4029 4.322057 AGATTAGGCCACAGTTTTCCAT 57.678 40.909 5.01 0.00 0.00 3.41
3581 4033 1.688197 AGGCCACAGTTTTCCATTGTG 59.312 47.619 5.01 0.00 41.34 3.33
3582 4034 1.501169 GCCACAGTTTTCCATTGTGC 58.499 50.000 0.00 0.00 40.57 4.57
3861 4313 4.218417 ACTGTATCTGTTTTGGTTGCATCC 59.782 41.667 6.88 6.88 0.00 3.51
3957 4409 4.081917 TGAACCTTGTGTCGTATATGCTGA 60.082 41.667 0.00 0.00 0.00 4.26
3965 4417 2.294791 GTCGTATATGCTGAGAGCCTGT 59.705 50.000 0.00 0.00 41.51 4.00
4031 4486 2.178912 TTCCACTTCGTTGATGTCCC 57.821 50.000 0.00 0.00 0.00 4.46
4220 4676 0.746659 GTTGCAAACCTTGTGAGCCT 59.253 50.000 0.00 0.00 42.21 4.58
4221 4677 0.746063 TTGCAAACCTTGTGAGCCTG 59.254 50.000 0.00 0.00 0.00 4.85
4249 4705 4.022849 AGTTGCTTTTCTGAAGTGTATGCC 60.023 41.667 0.00 0.00 0.00 4.40
4264 4720 7.020827 AGTGTATGCCTGCCATAGTAATAAT 57.979 36.000 0.00 0.00 37.10 1.28
4307 4763 9.276590 CTGAATAAATGTATCATCTGGCTAACA 57.723 33.333 0.00 0.00 0.00 2.41
4314 4770 3.678056 TCATCTGGCTAACAACGTCTT 57.322 42.857 0.00 0.00 0.00 3.01
4318 4774 4.002906 TCTGGCTAACAACGTCTTCATT 57.997 40.909 0.00 0.00 0.00 2.57
4325 4781 0.109597 CAACGTCTTCATTGCTGCCC 60.110 55.000 0.00 0.00 0.00 5.36
4326 4782 0.537143 AACGTCTTCATTGCTGCCCA 60.537 50.000 0.00 0.00 0.00 5.36
4336 4792 0.250467 TTGCTGCCCAACTGTCTCTC 60.250 55.000 0.00 0.00 0.00 3.20
4346 4802 4.701651 CCCAACTGTCTCTCAAATGCATAA 59.298 41.667 0.00 0.00 0.00 1.90
4351 4807 5.948162 ACTGTCTCTCAAATGCATAAACCAT 59.052 36.000 0.00 0.00 0.00 3.55
4352 4808 7.112122 ACTGTCTCTCAAATGCATAAACCATA 58.888 34.615 0.00 0.00 0.00 2.74
4353 4809 7.066284 ACTGTCTCTCAAATGCATAAACCATAC 59.934 37.037 0.00 0.00 0.00 2.39
4354 4810 7.112122 TGTCTCTCAAATGCATAAACCATACT 58.888 34.615 0.00 0.00 0.00 2.12
4361 4817 7.920151 TCAAATGCATAAACCATACTTACATGC 59.080 33.333 0.00 0.00 38.19 4.06
4384 4840 6.262049 TGCTGCTTGTCTTAATAAAGTTGTCA 59.738 34.615 0.00 0.00 34.13 3.58
4414 4870 8.258007 ACAGTAGTATTACTTGCAATAGCTGAA 58.742 33.333 0.00 0.00 38.05 3.02
4415 4871 8.543774 CAGTAGTATTACTTGCAATAGCTGAAC 58.456 37.037 0.00 0.00 38.05 3.18
4416 4872 6.589830 AGTATTACTTGCAATAGCTGAACG 57.410 37.500 0.00 0.00 42.74 3.95
4417 4873 6.106673 AGTATTACTTGCAATAGCTGAACGT 58.893 36.000 0.00 0.00 42.74 3.99
4418 4874 4.661993 TTACTTGCAATAGCTGAACGTG 57.338 40.909 0.00 0.00 42.74 4.49
4420 4876 2.878406 ACTTGCAATAGCTGAACGTGTT 59.122 40.909 0.00 0.00 42.74 3.32
4423 4879 3.884169 TGCAATAGCTGAACGTGTTTTC 58.116 40.909 0.00 0.00 42.74 2.29
4424 4880 3.563808 TGCAATAGCTGAACGTGTTTTCT 59.436 39.130 0.00 0.00 42.74 2.52
4425 4881 4.036262 TGCAATAGCTGAACGTGTTTTCTT 59.964 37.500 0.00 0.00 42.74 2.52
4427 4883 5.108254 GCAATAGCTGAACGTGTTTTCTTTG 60.108 40.000 0.00 0.00 37.91 2.77
4430 4886 3.119495 AGCTGAACGTGTTTTCTTTGCTT 60.119 39.130 0.00 0.00 29.57 3.91
4431 4887 3.612423 GCTGAACGTGTTTTCTTTGCTTT 59.388 39.130 0.00 0.00 0.00 3.51
4432 4888 4.091365 GCTGAACGTGTTTTCTTTGCTTTT 59.909 37.500 0.00 0.00 0.00 2.27
4433 4889 5.721240 GCTGAACGTGTTTTCTTTGCTTTTC 60.721 40.000 0.00 0.00 0.00 2.29
4435 4891 5.571357 TGAACGTGTTTTCTTTGCTTTTCTC 59.429 36.000 0.00 0.00 0.00 2.87
4436 4892 5.054390 ACGTGTTTTCTTTGCTTTTCTCA 57.946 34.783 0.00 0.00 0.00 3.27
4437 4893 4.857037 ACGTGTTTTCTTTGCTTTTCTCAC 59.143 37.500 0.00 0.00 0.00 3.51
4438 4894 4.856487 CGTGTTTTCTTTGCTTTTCTCACA 59.144 37.500 0.00 0.00 0.00 3.58
4439 4895 5.516339 CGTGTTTTCTTTGCTTTTCTCACAT 59.484 36.000 0.00 0.00 0.00 3.21
4440 4896 6.034898 CGTGTTTTCTTTGCTTTTCTCACATT 59.965 34.615 0.00 0.00 0.00 2.71
4441 4897 7.175410 GTGTTTTCTTTGCTTTTCTCACATTG 58.825 34.615 0.00 0.00 0.00 2.82
4443 4899 3.981211 TCTTTGCTTTTCTCACATTGGC 58.019 40.909 0.00 0.00 0.00 4.52
4444 4900 3.384146 TCTTTGCTTTTCTCACATTGGCA 59.616 39.130 0.00 0.00 0.00 4.92
4445 4901 2.798976 TGCTTTTCTCACATTGGCAC 57.201 45.000 0.00 0.00 0.00 5.01
4447 4903 2.034939 TGCTTTTCTCACATTGGCACTG 59.965 45.455 2.97 2.97 0.00 3.66
4448 4904 2.669364 CTTTTCTCACATTGGCACTGC 58.331 47.619 4.57 0.00 0.00 4.40
4449 4905 1.985473 TTTCTCACATTGGCACTGCT 58.015 45.000 4.57 0.00 0.00 4.24
4450 4906 1.527034 TTCTCACATTGGCACTGCTC 58.473 50.000 4.57 0.00 0.00 4.26
4451 4907 0.689055 TCTCACATTGGCACTGCTCT 59.311 50.000 4.57 0.00 0.00 4.09
4453 4909 0.109153 TCACATTGGCACTGCTCTGT 59.891 50.000 4.57 0.00 0.00 3.41
4455 4911 0.179009 ACATTGGCACTGCTCTGTGT 60.179 50.000 4.57 0.00 39.89 3.72
4457 4913 1.338973 CATTGGCACTGCTCTGTGTTT 59.661 47.619 0.00 0.00 39.89 2.83
4458 4914 1.473258 TTGGCACTGCTCTGTGTTTT 58.527 45.000 0.00 0.00 39.89 2.43
4459 4915 1.024271 TGGCACTGCTCTGTGTTTTC 58.976 50.000 0.00 0.00 39.89 2.29
4460 4916 1.312815 GGCACTGCTCTGTGTTTTCT 58.687 50.000 0.00 0.00 39.89 2.52
4461 4917 1.678101 GGCACTGCTCTGTGTTTTCTT 59.322 47.619 0.00 0.00 39.89 2.52
4463 4919 3.111098 GCACTGCTCTGTGTTTTCTTTG 58.889 45.455 8.35 0.00 39.89 2.77
4464 4920 3.111098 CACTGCTCTGTGTTTTCTTTGC 58.889 45.455 0.00 0.00 33.61 3.68
4465 4921 3.019564 ACTGCTCTGTGTTTTCTTTGCT 58.980 40.909 0.00 0.00 0.00 3.91
4466 4922 3.445096 ACTGCTCTGTGTTTTCTTTGCTT 59.555 39.130 0.00 0.00 0.00 3.91
4467 4923 4.082026 ACTGCTCTGTGTTTTCTTTGCTTT 60.082 37.500 0.00 0.00 0.00 3.51
4468 4924 4.819769 TGCTCTGTGTTTTCTTTGCTTTT 58.180 34.783 0.00 0.00 0.00 2.27
4469 4925 4.864247 TGCTCTGTGTTTTCTTTGCTTTTC 59.136 37.500 0.00 0.00 0.00 2.29
4470 4926 5.105063 GCTCTGTGTTTTCTTTGCTTTTCT 58.895 37.500 0.00 0.00 0.00 2.52
4471 4927 5.230936 GCTCTGTGTTTTCTTTGCTTTTCTC 59.769 40.000 0.00 0.00 0.00 2.87
4472 4928 6.266168 TCTGTGTTTTCTTTGCTTTTCTCA 57.734 33.333 0.00 0.00 0.00 3.27
4473 4929 6.092748 TCTGTGTTTTCTTTGCTTTTCTCAC 58.907 36.000 0.00 0.00 0.00 3.51
4475 4931 6.397272 TGTGTTTTCTTTGCTTTTCTCACAT 58.603 32.000 0.00 0.00 0.00 3.21
4478 4934 6.313411 TGTTTTCTTTGCTTTTCTCACATTGG 59.687 34.615 0.00 0.00 0.00 3.16
4479 4935 3.981211 TCTTTGCTTTTCTCACATTGGC 58.019 40.909 0.00 0.00 0.00 4.52
4482 4938 2.309613 TGCTTTTCTCACATTGGCACT 58.690 42.857 0.00 0.00 0.00 4.40
4484 4940 2.669364 CTTTTCTCACATTGGCACTGC 58.331 47.619 4.57 0.00 0.00 4.40
4485 4941 1.985473 TTTCTCACATTGGCACTGCT 58.015 45.000 4.57 0.00 0.00 4.24
4486 4942 1.527034 TTCTCACATTGGCACTGCTC 58.473 50.000 4.57 0.00 0.00 4.26
4487 4943 0.689055 TCTCACATTGGCACTGCTCT 59.311 50.000 4.57 0.00 0.00 4.09
4490 4946 0.803117 CACATTGGCACTGCTCTCTG 59.197 55.000 4.57 0.00 0.00 3.35
4491 4947 0.689055 ACATTGGCACTGCTCTCTGA 59.311 50.000 4.57 0.00 0.00 3.27
4493 4949 2.290768 ACATTGGCACTGCTCTCTGAAT 60.291 45.455 4.57 0.00 0.00 2.57
4494 4950 3.054875 ACATTGGCACTGCTCTCTGAATA 60.055 43.478 4.57 0.00 0.00 1.75
4495 4951 3.701205 TTGGCACTGCTCTCTGAATAA 57.299 42.857 0.00 0.00 0.00 1.40
4497 4953 3.338249 TGGCACTGCTCTCTGAATAAAC 58.662 45.455 0.00 0.00 0.00 2.01
4500 4956 4.502962 GCACTGCTCTCTGAATAAACTCT 58.497 43.478 0.00 0.00 0.00 3.24
4503 4959 5.806502 CACTGCTCTCTGAATAAACTCTCTG 59.193 44.000 0.00 0.00 0.00 3.35
4504 4960 5.480073 ACTGCTCTCTGAATAAACTCTCTGT 59.520 40.000 0.00 0.00 0.00 3.41
4505 4961 5.960113 TGCTCTCTGAATAAACTCTCTGTC 58.040 41.667 0.00 0.00 0.00 3.51
4506 4962 5.714333 TGCTCTCTGAATAAACTCTCTGTCT 59.286 40.000 0.00 0.00 0.00 3.41
4508 4964 7.148154 TGCTCTCTGAATAAACTCTCTGTCTAC 60.148 40.741 0.00 0.00 0.00 2.59
4509 4965 7.633193 TCTCTGAATAAACTCTCTGTCTACC 57.367 40.000 0.00 0.00 0.00 3.18
4511 4967 6.494952 TCTGAATAAACTCTCTGTCTACCCT 58.505 40.000 0.00 0.00 0.00 4.34
4513 4969 5.657302 TGAATAAACTCTCTGTCTACCCTCC 59.343 44.000 0.00 0.00 0.00 4.30
4514 4970 2.535836 AACTCTCTGTCTACCCTCCC 57.464 55.000 0.00 0.00 0.00 4.30
4515 4971 0.632294 ACTCTCTGTCTACCCTCCCC 59.368 60.000 0.00 0.00 0.00 4.81
4517 4973 0.631753 TCTCTGTCTACCCTCCCCTG 59.368 60.000 0.00 0.00 0.00 4.45
4518 4974 0.631753 CTCTGTCTACCCTCCCCTGA 59.368 60.000 0.00 0.00 0.00 3.86
4521 4977 1.153695 TGTCTACCCTCCCCTGACCT 61.154 60.000 0.00 0.00 0.00 3.85
4523 4979 1.075151 CTACCCTCCCCTGACCTCC 60.075 68.421 0.00 0.00 0.00 4.30
4524 4980 1.549322 TACCCTCCCCTGACCTCCT 60.549 63.158 0.00 0.00 0.00 3.69
4525 4981 1.886730 TACCCTCCCCTGACCTCCTG 61.887 65.000 0.00 0.00 0.00 3.86
4526 4982 2.452114 CCTCCCCTGACCTCCTGT 59.548 66.667 0.00 0.00 0.00 4.00
4527 4983 1.704082 CCTCCCCTGACCTCCTGTA 59.296 63.158 0.00 0.00 0.00 2.74
4528 4984 0.266152 CCTCCCCTGACCTCCTGTAT 59.734 60.000 0.00 0.00 0.00 2.29
4529 4985 1.344496 CCTCCCCTGACCTCCTGTATT 60.344 57.143 0.00 0.00 0.00 1.89
4530 4986 2.043227 CTCCCCTGACCTCCTGTATTC 58.957 57.143 0.00 0.00 0.00 1.75
4531 4987 1.132500 CCCCTGACCTCCTGTATTCC 58.868 60.000 0.00 0.00 0.00 3.01
4532 4988 1.344496 CCCCTGACCTCCTGTATTCCT 60.344 57.143 0.00 0.00 0.00 3.36
4533 4989 2.482494 CCCTGACCTCCTGTATTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
4534 4990 2.436173 CCCTGACCTCCTGTATTCCTTC 59.564 54.545 0.00 0.00 0.00 3.46
4535 4991 2.436173 CCTGACCTCCTGTATTCCTTCC 59.564 54.545 0.00 0.00 0.00 3.46
4548 5305 5.945784 TGTATTCCTTCCTGAAGTGGATTTG 59.054 40.000 6.19 0.00 36.72 2.32
4555 5312 3.074390 TCCTGAAGTGGATTTGGACATGT 59.926 43.478 0.00 0.00 0.00 3.21
4556 5313 3.192001 CCTGAAGTGGATTTGGACATGTG 59.808 47.826 1.15 0.00 0.00 3.21
4557 5314 3.822735 CTGAAGTGGATTTGGACATGTGT 59.177 43.478 1.15 0.00 0.00 3.72
4574 5331 8.198109 GGACATGTGTATACAGAAAGTGATACT 58.802 37.037 1.15 0.00 40.79 2.12
4612 5369 2.475155 TCCTGCATCCTTGAGACTGAT 58.525 47.619 0.00 0.00 0.00 2.90
4724 5481 7.487509 CGATGACCATCAATATCACATCTAGTC 59.512 40.741 10.24 0.00 37.69 2.59
4749 5506 2.440409 GTGCCATGGATTTGTCTCACT 58.560 47.619 18.40 0.00 0.00 3.41
4750 5507 2.821969 GTGCCATGGATTTGTCTCACTT 59.178 45.455 18.40 0.00 0.00 3.16
4751 5508 2.821378 TGCCATGGATTTGTCTCACTTG 59.179 45.455 18.40 0.00 0.00 3.16
4752 5509 2.416431 GCCATGGATTTGTCTCACTTGC 60.416 50.000 18.40 0.00 0.00 4.01
4753 5510 2.159476 CCATGGATTTGTCTCACTTGCG 60.159 50.000 5.56 0.00 0.00 4.85
4754 5511 2.542020 TGGATTTGTCTCACTTGCGA 57.458 45.000 0.00 0.00 0.00 5.10
4755 5512 3.057969 TGGATTTGTCTCACTTGCGAT 57.942 42.857 0.00 0.00 0.00 4.58
4756 5513 3.411446 TGGATTTGTCTCACTTGCGATT 58.589 40.909 0.00 0.00 0.00 3.34
4766 5523 0.039527 ACTTGCGATTTTGCGAACCC 60.040 50.000 0.00 0.00 37.81 4.11
4767 5524 0.039617 CTTGCGATTTTGCGAACCCA 60.040 50.000 0.00 0.00 37.81 4.51
4864 5623 4.858692 GCACAAACGATTATGCAGTTTCAT 59.141 37.500 3.58 0.00 36.12 2.57
4865 5624 5.345741 GCACAAACGATTATGCAGTTTCATT 59.654 36.000 3.58 0.00 36.12 2.57
4883 5642 4.492604 TTTTTGTCCTGGAGGGCG 57.507 55.556 0.00 0.00 44.44 6.13
4921 5682 6.710295 AGTATTAACAGATGCCATGCGATAAA 59.290 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.973082 GCCCAGCGCCTTTTGATT 59.027 55.556 2.29 0.00 0.00 2.57
257 261 0.317020 CGCGATGATCACAGAGCGTA 60.317 55.000 20.50 0.00 44.37 4.42
258 262 1.587350 CGCGATGATCACAGAGCGT 60.587 57.895 20.50 0.00 44.37 5.07
416 436 0.105593 CTATGATGTGCGGAGTGCCT 59.894 55.000 0.00 0.00 45.60 4.75
497 542 2.501222 CGTCTTCGTCGTGGTCGG 60.501 66.667 0.00 0.00 37.69 4.79
550 603 0.036765 GGACGACCACCTTGTATGCA 60.037 55.000 0.00 0.00 35.97 3.96
603 664 7.614124 AAGGTCGATATTTTAACCGCTTAAA 57.386 32.000 0.00 0.00 36.87 1.52
714 780 5.106475 GGAAGTGGTCATTTAACGTTGCATA 60.106 40.000 11.99 0.00 0.00 3.14
715 781 4.320935 GGAAGTGGTCATTTAACGTTGCAT 60.321 41.667 11.99 0.00 0.00 3.96
716 782 3.003897 GGAAGTGGTCATTTAACGTTGCA 59.996 43.478 11.99 0.00 0.00 4.08
717 783 3.561503 GGAAGTGGTCATTTAACGTTGC 58.438 45.455 11.99 0.00 0.00 4.17
725 791 2.574369 TGGATACGGGAAGTGGTCATTT 59.426 45.455 0.00 0.00 42.51 2.32
733 799 1.837090 GGGCATGGATACGGGAAGT 59.163 57.895 0.00 0.00 42.51 3.01
734 800 1.301716 CGGGCATGGATACGGGAAG 60.302 63.158 0.00 0.00 42.51 3.46
740 806 1.812686 TAGTCCGCGGGCATGGATAC 61.813 60.000 34.17 17.05 36.48 2.24
741 807 1.532078 TAGTCCGCGGGCATGGATA 60.532 57.895 34.17 12.57 36.48 2.59
744 810 3.792053 GACTAGTCCGCGGGCATGG 62.792 68.421 34.17 22.43 0.00 3.66
764 830 4.752879 ACGTCCATTCACCGGCGG 62.753 66.667 27.06 27.06 0.00 6.13
765 831 3.487202 CACGTCCATTCACCGGCG 61.487 66.667 0.00 0.00 0.00 6.46
766 832 2.358247 ACACGTCCATTCACCGGC 60.358 61.111 0.00 0.00 0.00 6.13
767 833 1.005512 TCACACGTCCATTCACCGG 60.006 57.895 0.00 0.00 0.00 5.28
768 834 0.038618 TCTCACACGTCCATTCACCG 60.039 55.000 0.00 0.00 0.00 4.94
769 835 2.163818 TTCTCACACGTCCATTCACC 57.836 50.000 0.00 0.00 0.00 4.02
770 836 4.749245 ATTTTCTCACACGTCCATTCAC 57.251 40.909 0.00 0.00 0.00 3.18
771 837 5.518812 CAAATTTTCTCACACGTCCATTCA 58.481 37.500 0.00 0.00 0.00 2.57
772 838 4.382754 GCAAATTTTCTCACACGTCCATTC 59.617 41.667 0.00 0.00 0.00 2.67
773 839 4.298332 GCAAATTTTCTCACACGTCCATT 58.702 39.130 0.00 0.00 0.00 3.16
774 840 3.609175 CGCAAATTTTCTCACACGTCCAT 60.609 43.478 0.00 0.00 0.00 3.41
775 841 2.286713 CGCAAATTTTCTCACACGTCCA 60.287 45.455 0.00 0.00 0.00 4.02
776 842 2.307049 CGCAAATTTTCTCACACGTCC 58.693 47.619 0.00 0.00 0.00 4.79
777 843 2.307049 CCGCAAATTTTCTCACACGTC 58.693 47.619 0.00 0.00 0.00 4.34
778 844 1.001815 CCCGCAAATTTTCTCACACGT 60.002 47.619 0.00 0.00 0.00 4.49
779 845 1.001815 ACCCGCAAATTTTCTCACACG 60.002 47.619 0.00 0.00 0.00 4.49
783 849 1.253100 GGGACCCGCAAATTTTCTCA 58.747 50.000 0.00 0.00 0.00 3.27
801 867 2.916527 AATTGCTGGGCCATCTCCGG 62.917 60.000 6.72 0.00 0.00 5.14
803 869 0.685458 ACAATTGCTGGGCCATCTCC 60.685 55.000 6.72 0.00 0.00 3.71
806 872 1.434696 CGACAATTGCTGGGCCATC 59.565 57.895 6.72 2.53 0.00 3.51
815 881 0.239347 ACAGAAGCAGCGACAATTGC 59.761 50.000 5.05 0.00 40.57 3.56
819 885 1.339929 TCAGTACAGAAGCAGCGACAA 59.660 47.619 0.00 0.00 0.00 3.18
981 1049 5.931441 AGACGAAGAAGGAAGAAATTGTG 57.069 39.130 0.00 0.00 0.00 3.33
1018 1093 4.918201 CCGCTCCTTGGATCCCGC 62.918 72.222 9.90 3.28 0.00 6.13
1094 1169 0.250597 GGGCGGTAAACAACTCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
1112 1187 2.130193 TCCCTTTGATGAGATGGAGGG 58.870 52.381 0.00 0.00 44.18 4.30
1280 1367 1.024339 AGGGGAGGGGGATTAGGGAT 61.024 60.000 0.00 0.00 0.00 3.85
1293 1380 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1297 1384 3.369161 AATGGGAGGGGAGGGGAGG 62.369 68.421 0.00 0.00 0.00 4.30
1298 1385 1.772156 GAATGGGAGGGGAGGGGAG 60.772 68.421 0.00 0.00 0.00 4.30
1299 1386 2.271493 GAGAATGGGAGGGGAGGGGA 62.271 65.000 0.00 0.00 0.00 4.81
1300 1387 1.772156 GAGAATGGGAGGGGAGGGG 60.772 68.421 0.00 0.00 0.00 4.79
1301 1388 2.143419 CGAGAATGGGAGGGGAGGG 61.143 68.421 0.00 0.00 0.00 4.30
1302 1389 2.812619 GCGAGAATGGGAGGGGAGG 61.813 68.421 0.00 0.00 0.00 4.30
1303 1390 2.812619 GGCGAGAATGGGAGGGGAG 61.813 68.421 0.00 0.00 0.00 4.30
1335 1423 4.778415 CCTCTCGTCGGCGTGGTG 62.778 72.222 10.18 3.88 39.49 4.17
1342 1430 3.701604 CTTTCGCCCCTCTCGTCGG 62.702 68.421 0.00 0.00 0.00 4.79
1343 1431 2.202623 CTTTCGCCCCTCTCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
1402 1495 3.016736 CACATCTTTGCCCCGAGTTATT 58.983 45.455 0.00 0.00 0.00 1.40
1405 1498 1.244019 GCACATCTTTGCCCCGAGTT 61.244 55.000 0.00 0.00 36.42 3.01
1406 1499 1.675641 GCACATCTTTGCCCCGAGT 60.676 57.895 0.00 0.00 36.42 4.18
1407 1500 3.190878 GCACATCTTTGCCCCGAG 58.809 61.111 0.00 0.00 36.42 4.63
1445 1539 1.602237 GATGGTGGCGGAGAGGAAA 59.398 57.895 0.00 0.00 0.00 3.13
1619 1713 0.829333 TTGGAAAAAGGCAGCAGCAA 59.171 45.000 2.65 0.00 44.61 3.91
1620 1714 1.001181 GATTGGAAAAAGGCAGCAGCA 59.999 47.619 2.65 0.00 44.61 4.41
1621 1715 1.274447 AGATTGGAAAAAGGCAGCAGC 59.726 47.619 0.00 0.00 41.10 5.25
1622 1716 2.559668 TGAGATTGGAAAAAGGCAGCAG 59.440 45.455 0.00 0.00 0.00 4.24
1623 1717 2.559668 CTGAGATTGGAAAAAGGCAGCA 59.440 45.455 0.00 0.00 0.00 4.41
1624 1718 2.560105 ACTGAGATTGGAAAAAGGCAGC 59.440 45.455 0.00 0.00 0.00 5.25
1625 1719 3.613432 GCACTGAGATTGGAAAAAGGCAG 60.613 47.826 0.00 0.00 0.00 4.85
1626 1720 2.297033 GCACTGAGATTGGAAAAAGGCA 59.703 45.455 0.00 0.00 0.00 4.75
1627 1721 2.297033 TGCACTGAGATTGGAAAAAGGC 59.703 45.455 0.00 0.00 0.00 4.35
1628 1722 3.318839 TGTGCACTGAGATTGGAAAAAGG 59.681 43.478 19.41 0.00 0.00 3.11
1629 1723 4.572985 TGTGCACTGAGATTGGAAAAAG 57.427 40.909 19.41 0.00 0.00 2.27
1630 1724 5.534207 AATGTGCACTGAGATTGGAAAAA 57.466 34.783 19.41 0.00 0.00 1.94
1667 1761 1.065031 CGAACGGCCAAGAATTTGCG 61.065 55.000 2.24 0.00 32.79 4.85
1734 1828 3.871594 AGGCATAATCTCGTTGCTTGTAC 59.128 43.478 0.00 0.00 36.62 2.90
1828 1922 4.418401 CCGTGCACGCATTTGGGG 62.418 66.667 33.17 13.44 38.18 4.96
1961 2056 0.249073 ACGATGTGCTAAGCCGCTAG 60.249 55.000 0.00 0.00 0.00 3.42
1965 2060 0.647410 CTGAACGATGTGCTAAGCCG 59.353 55.000 0.00 0.00 0.00 5.52
2097 2193 7.225784 TCTCCATTTAGCAAAATTAGCACAA 57.774 32.000 5.70 0.00 32.87 3.33
2213 2310 7.092979 TGGATGGGAAAATCAGCAATTCATTAA 60.093 33.333 0.00 0.00 0.00 1.40
2234 2331 4.382291 CATGCCATGGGTTAATTTGGATG 58.618 43.478 15.13 0.00 0.00 3.51
2252 2349 4.099881 TGGGGATCAAAAATAGAAGCATGC 59.900 41.667 10.51 10.51 0.00 4.06
2262 2359 3.598299 CACGCATTTGGGGATCAAAAAT 58.402 40.909 0.00 0.00 46.93 1.82
2281 2378 2.200170 GAATCCCCGTTGCAGTGCAC 62.200 60.000 19.58 9.40 38.71 4.57
2307 2404 5.527214 CAGGAACAATGTGTTGACACTAGAA 59.473 40.000 14.66 0.00 46.55 2.10
2317 2414 3.632145 GTCTCAACCAGGAACAATGTGTT 59.368 43.478 0.00 0.00 44.37 3.32
2362 2459 4.380655 CGCTAAGCCACTAACAGTTAGTCT 60.381 45.833 21.21 14.23 44.32 3.24
2568 2670 7.563906 TGGTGAAAATTTCAAAGATTCCAAGT 58.436 30.769 10.27 0.00 42.15 3.16
2624 2728 0.666274 CGAACGCAGCCTTAGTGTGA 60.666 55.000 0.00 0.00 0.00 3.58
2626 2730 1.374252 CCGAACGCAGCCTTAGTGT 60.374 57.895 0.00 0.00 0.00 3.55
2629 2733 0.931005 GATTCCGAACGCAGCCTTAG 59.069 55.000 0.00 0.00 0.00 2.18
2630 2734 0.461339 GGATTCCGAACGCAGCCTTA 60.461 55.000 0.00 0.00 0.00 2.69
2631 2735 1.745489 GGATTCCGAACGCAGCCTT 60.745 57.895 0.00 0.00 0.00 4.35
2632 2736 2.125106 GGATTCCGAACGCAGCCT 60.125 61.111 0.00 0.00 0.00 4.58
2633 2737 3.202706 GGGATTCCGAACGCAGCC 61.203 66.667 0.00 0.00 0.00 4.85
2634 2738 2.125106 AGGGATTCCGAACGCAGC 60.125 61.111 0.00 0.00 38.33 5.25
2635 2739 1.521681 GGAGGGATTCCGAACGCAG 60.522 63.158 0.00 0.00 35.91 5.18
2636 2740 2.582436 GGAGGGATTCCGAACGCA 59.418 61.111 0.00 0.00 35.91 5.24
2643 2747 1.056660 TTATGGAGCGGAGGGATTCC 58.943 55.000 0.00 0.00 43.04 3.01
2644 2748 1.694696 AGTTATGGAGCGGAGGGATTC 59.305 52.381 0.00 0.00 0.00 2.52
2645 2749 1.694696 GAGTTATGGAGCGGAGGGATT 59.305 52.381 0.00 0.00 0.00 3.01
2646 2750 1.343069 GAGTTATGGAGCGGAGGGAT 58.657 55.000 0.00 0.00 0.00 3.85
2647 2751 0.759436 GGAGTTATGGAGCGGAGGGA 60.759 60.000 0.00 0.00 0.00 4.20
2648 2752 0.760945 AGGAGTTATGGAGCGGAGGG 60.761 60.000 0.00 0.00 0.00 4.30
2649 2753 1.069358 GAAGGAGTTATGGAGCGGAGG 59.931 57.143 0.00 0.00 0.00 4.30
2650 2754 1.269309 CGAAGGAGTTATGGAGCGGAG 60.269 57.143 0.00 0.00 0.00 4.63
2651 2755 0.744874 CGAAGGAGTTATGGAGCGGA 59.255 55.000 0.00 0.00 0.00 5.54
2652 2756 0.876342 GCGAAGGAGTTATGGAGCGG 60.876 60.000 0.00 0.00 0.00 5.52
2653 2757 1.209275 CGCGAAGGAGTTATGGAGCG 61.209 60.000 0.00 0.00 40.37 5.03
2654 2758 0.876342 CCGCGAAGGAGTTATGGAGC 60.876 60.000 8.23 0.00 45.00 4.70
2655 2759 0.744874 TCCGCGAAGGAGTTATGGAG 59.255 55.000 8.23 0.00 45.98 3.86
2656 2760 2.890612 TCCGCGAAGGAGTTATGGA 58.109 52.632 8.23 0.00 45.98 3.41
2671 2775 2.892425 GAATGCCACTCCGCTCCG 60.892 66.667 0.00 0.00 0.00 4.63
2672 2776 1.817099 CTGAATGCCACTCCGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
2673 2777 0.175760 TACTGAATGCCACTCCGCTC 59.824 55.000 0.00 0.00 0.00 5.03
2674 2778 0.176680 CTACTGAATGCCACTCCGCT 59.823 55.000 0.00 0.00 0.00 5.52
2675 2779 0.175760 TCTACTGAATGCCACTCCGC 59.824 55.000 0.00 0.00 0.00 5.54
2676 2780 2.672961 TTCTACTGAATGCCACTCCG 57.327 50.000 0.00 0.00 0.00 4.63
2677 2781 5.393461 CCAAATTTCTACTGAATGCCACTCC 60.393 44.000 0.00 0.00 31.56 3.85
2678 2782 5.393461 CCCAAATTTCTACTGAATGCCACTC 60.393 44.000 0.00 0.00 31.56 3.51
2679 2783 4.463891 CCCAAATTTCTACTGAATGCCACT 59.536 41.667 0.00 0.00 31.56 4.00
2680 2784 4.381932 CCCCAAATTTCTACTGAATGCCAC 60.382 45.833 0.00 0.00 31.56 5.01
2681 2785 3.768757 CCCCAAATTTCTACTGAATGCCA 59.231 43.478 0.00 0.00 31.56 4.92
2682 2786 4.023291 TCCCCAAATTTCTACTGAATGCC 58.977 43.478 0.00 0.00 31.56 4.40
2683 2787 4.440663 GCTCCCCAAATTTCTACTGAATGC 60.441 45.833 0.00 0.00 31.56 3.56
2684 2788 4.201950 CGCTCCCCAAATTTCTACTGAATG 60.202 45.833 0.00 0.00 31.56 2.67
2685 2789 3.947834 CGCTCCCCAAATTTCTACTGAAT 59.052 43.478 0.00 0.00 31.56 2.57
2686 2790 3.343617 CGCTCCCCAAATTTCTACTGAA 58.656 45.455 0.00 0.00 0.00 3.02
2687 2791 2.355716 CCGCTCCCCAAATTTCTACTGA 60.356 50.000 0.00 0.00 0.00 3.41
2688 2792 2.017049 CCGCTCCCCAAATTTCTACTG 58.983 52.381 0.00 0.00 0.00 2.74
2689 2793 1.682087 GCCGCTCCCCAAATTTCTACT 60.682 52.381 0.00 0.00 0.00 2.57
2690 2794 0.738975 GCCGCTCCCCAAATTTCTAC 59.261 55.000 0.00 0.00 0.00 2.59
2691 2795 0.395173 GGCCGCTCCCCAAATTTCTA 60.395 55.000 0.00 0.00 0.00 2.10
2692 2796 1.682344 GGCCGCTCCCCAAATTTCT 60.682 57.895 0.00 0.00 0.00 2.52
2693 2797 1.540435 TTGGCCGCTCCCCAAATTTC 61.540 55.000 0.00 0.00 39.29 2.17
2694 2798 0.909133 ATTGGCCGCTCCCCAAATTT 60.909 50.000 0.00 0.00 44.80 1.82
2695 2799 0.032615 TATTGGCCGCTCCCCAAATT 60.033 50.000 0.00 0.00 44.80 1.82
2696 2800 0.468029 CTATTGGCCGCTCCCCAAAT 60.468 55.000 0.00 0.00 44.80 2.32
2697 2801 1.077068 CTATTGGCCGCTCCCCAAA 60.077 57.895 0.00 0.00 44.80 3.28
2698 2802 2.595095 CTATTGGCCGCTCCCCAA 59.405 61.111 0.00 2.67 45.63 4.12
2699 2803 2.900269 TACCTATTGGCCGCTCCCCA 62.900 60.000 0.00 0.00 36.63 4.96
2700 2804 2.113243 CTACCTATTGGCCGCTCCCC 62.113 65.000 0.00 0.00 36.63 4.81
2701 2805 1.371558 CTACCTATTGGCCGCTCCC 59.628 63.158 0.00 0.00 36.63 4.30
2702 2806 1.301795 GCTACCTATTGGCCGCTCC 60.302 63.158 0.00 0.00 36.63 4.70
2703 2807 0.319986 GAGCTACCTATTGGCCGCTC 60.320 60.000 17.02 17.02 45.19 5.03
2704 2808 1.749033 GAGCTACCTATTGGCCGCT 59.251 57.895 9.04 9.04 42.39 5.52
2705 2809 1.301795 GGAGCTACCTATTGGCCGC 60.302 63.158 0.00 0.00 36.63 6.53
2706 2810 1.006102 CGGAGCTACCTATTGGCCG 60.006 63.158 0.00 0.00 36.63 6.13
2729 2833 1.045350 TCCTTCATCAGGGAGCGGAG 61.045 60.000 0.00 0.00 44.12 4.63
2730 2834 1.001631 TCCTTCATCAGGGAGCGGA 59.998 57.895 0.00 0.00 44.12 5.54
2731 2835 1.445095 CTCCTTCATCAGGGAGCGG 59.555 63.158 0.00 0.00 44.12 5.52
2735 2839 2.066393 CCCGCTCCTTCATCAGGGA 61.066 63.158 0.00 0.00 44.12 4.20
2736 2840 2.507944 CCCGCTCCTTCATCAGGG 59.492 66.667 0.00 0.00 44.12 4.45
2737 2841 2.203126 GCCCGCTCCTTCATCAGG 60.203 66.667 0.00 0.00 45.64 3.86
2738 2842 2.374830 ATCGCCCGCTCCTTCATCAG 62.375 60.000 0.00 0.00 0.00 2.90
2739 2843 1.971505 AATCGCCCGCTCCTTCATCA 61.972 55.000 0.00 0.00 0.00 3.07
2740 2844 1.227674 AATCGCCCGCTCCTTCATC 60.228 57.895 0.00 0.00 0.00 2.92
2741 2845 1.524621 CAATCGCCCGCTCCTTCAT 60.525 57.895 0.00 0.00 0.00 2.57
2742 2846 2.125147 CAATCGCCCGCTCCTTCA 60.125 61.111 0.00 0.00 0.00 3.02
2743 2847 3.577313 GCAATCGCCCGCTCCTTC 61.577 66.667 0.00 0.00 0.00 3.46
2753 2857 2.202349 GCTGTGTTCGGCAATCGC 60.202 61.111 0.00 0.00 44.61 4.58
2754 2858 0.739462 TAGGCTGTGTTCGGCAATCG 60.739 55.000 0.00 0.00 46.81 3.34
2755 2859 1.398390 CTTAGGCTGTGTTCGGCAATC 59.602 52.381 0.00 0.00 46.81 2.67
2756 2860 1.003118 TCTTAGGCTGTGTTCGGCAAT 59.997 47.619 0.00 0.00 46.81 3.56
2757 2861 0.394938 TCTTAGGCTGTGTTCGGCAA 59.605 50.000 0.00 0.00 46.81 4.52
2758 2862 0.613260 ATCTTAGGCTGTGTTCGGCA 59.387 50.000 0.00 0.00 46.81 5.69
2759 2863 1.134670 AGATCTTAGGCTGTGTTCGGC 60.135 52.381 0.00 0.00 44.51 5.54
2760 2864 2.969628 AGATCTTAGGCTGTGTTCGG 57.030 50.000 0.00 0.00 0.00 4.30
2761 2865 3.862267 CAGAAGATCTTAGGCTGTGTTCG 59.138 47.826 8.25 0.00 0.00 3.95
2762 2866 4.826556 ACAGAAGATCTTAGGCTGTGTTC 58.173 43.478 21.33 2.30 38.30 3.18
2763 2867 4.899352 ACAGAAGATCTTAGGCTGTGTT 57.101 40.909 21.33 3.85 38.30 3.32
2764 2868 4.899352 AACAGAAGATCTTAGGCTGTGT 57.101 40.909 22.23 8.31 39.53 3.72
2765 2869 5.486526 AGAAACAGAAGATCTTAGGCTGTG 58.513 41.667 22.23 7.74 39.53 3.66
2766 2870 5.483583 AGAGAAACAGAAGATCTTAGGCTGT 59.516 40.000 18.03 18.03 41.19 4.40
2767 2871 5.976458 AGAGAAACAGAAGATCTTAGGCTG 58.024 41.667 16.99 16.99 0.00 4.85
2768 2872 6.405538 CAAGAGAAACAGAAGATCTTAGGCT 58.594 40.000 8.25 0.00 0.00 4.58
2769 2873 5.064579 GCAAGAGAAACAGAAGATCTTAGGC 59.935 44.000 8.25 0.00 0.00 3.93
2770 2874 6.169094 TGCAAGAGAAACAGAAGATCTTAGG 58.831 40.000 8.25 6.13 0.00 2.69
2845 2969 3.199880 AGTAATTCAGGAATCAGGGCG 57.800 47.619 0.00 0.00 0.00 6.13
2846 2970 4.273318 ACAAGTAATTCAGGAATCAGGGC 58.727 43.478 0.00 0.00 0.00 5.19
2847 2971 5.355350 GTGACAAGTAATTCAGGAATCAGGG 59.645 44.000 0.00 0.00 0.00 4.45
2848 2972 5.063944 CGTGACAAGTAATTCAGGAATCAGG 59.936 44.000 0.00 0.00 30.72 3.86
2849 2973 5.063944 CCGTGACAAGTAATTCAGGAATCAG 59.936 44.000 0.00 0.00 30.72 2.90
2850 2974 4.935205 CCGTGACAAGTAATTCAGGAATCA 59.065 41.667 0.00 0.00 30.72 2.57
2851 2975 5.175859 TCCGTGACAAGTAATTCAGGAATC 58.824 41.667 0.00 0.00 30.72 2.52
2852 2976 5.160607 TCCGTGACAAGTAATTCAGGAAT 57.839 39.130 0.00 0.00 30.72 3.01
2857 2981 5.309638 TCCATTTCCGTGACAAGTAATTCA 58.690 37.500 0.00 0.00 0.00 2.57
2906 3030 8.790718 GCAGAAATGGATGTGATTAGATGTATT 58.209 33.333 0.00 0.00 0.00 1.89
2907 3031 7.940688 TGCAGAAATGGATGTGATTAGATGTAT 59.059 33.333 0.00 0.00 0.00 2.29
2908 3032 7.281841 TGCAGAAATGGATGTGATTAGATGTA 58.718 34.615 0.00 0.00 0.00 2.29
2909 3033 6.124340 TGCAGAAATGGATGTGATTAGATGT 58.876 36.000 0.00 0.00 0.00 3.06
2910 3034 6.628919 TGCAGAAATGGATGTGATTAGATG 57.371 37.500 0.00 0.00 0.00 2.90
2911 3035 6.604396 TGTTGCAGAAATGGATGTGATTAGAT 59.396 34.615 0.00 0.00 0.00 1.98
2913 3037 6.198650 TGTTGCAGAAATGGATGTGATTAG 57.801 37.500 0.00 0.00 0.00 1.73
2915 3039 5.011329 ACTTGTTGCAGAAATGGATGTGATT 59.989 36.000 0.00 0.00 0.00 2.57
2916 3040 4.525487 ACTTGTTGCAGAAATGGATGTGAT 59.475 37.500 0.00 0.00 0.00 3.06
2917 3041 3.890756 ACTTGTTGCAGAAATGGATGTGA 59.109 39.130 0.00 0.00 0.00 3.58
2918 3042 4.247267 ACTTGTTGCAGAAATGGATGTG 57.753 40.909 0.00 0.00 0.00 3.21
2919 3043 6.594788 ATTACTTGTTGCAGAAATGGATGT 57.405 33.333 0.00 0.00 0.00 3.06
2920 3044 7.274904 CAGAATTACTTGTTGCAGAAATGGATG 59.725 37.037 0.00 0.00 0.00 3.51
2921 3045 7.318141 CAGAATTACTTGTTGCAGAAATGGAT 58.682 34.615 0.00 0.00 0.00 3.41
2922 3046 6.294675 CCAGAATTACTTGTTGCAGAAATGGA 60.295 38.462 0.00 0.00 0.00 3.41
2923 3047 5.865552 CCAGAATTACTTGTTGCAGAAATGG 59.134 40.000 0.00 0.00 0.00 3.16
2924 3048 6.583806 GTCCAGAATTACTTGTTGCAGAAATG 59.416 38.462 0.00 0.00 0.00 2.32
2926 3050 5.277779 CGTCCAGAATTACTTGTTGCAGAAA 60.278 40.000 0.00 0.00 0.00 2.52
2927 3051 4.213270 CGTCCAGAATTACTTGTTGCAGAA 59.787 41.667 0.00 0.00 0.00 3.02
2928 3052 3.745975 CGTCCAGAATTACTTGTTGCAGA 59.254 43.478 0.00 0.00 0.00 4.26
2929 3053 3.120199 CCGTCCAGAATTACTTGTTGCAG 60.120 47.826 0.00 0.00 0.00 4.41
2931 3055 3.071479 TCCGTCCAGAATTACTTGTTGC 58.929 45.455 0.00 0.00 0.00 4.17
2932 3056 3.684788 CCTCCGTCCAGAATTACTTGTTG 59.315 47.826 0.00 0.00 0.00 3.33
2933 3057 3.307480 CCCTCCGTCCAGAATTACTTGTT 60.307 47.826 0.00 0.00 0.00 2.83
2934 3058 2.236395 CCCTCCGTCCAGAATTACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
2935 3059 2.500098 TCCCTCCGTCCAGAATTACTTG 59.500 50.000 0.00 0.00 0.00 3.16
2941 3065 1.288335 AGTACTCCCTCCGTCCAGAAT 59.712 52.381 0.00 0.00 0.00 2.40
2944 3068 1.489649 TCTAGTACTCCCTCCGTCCAG 59.510 57.143 0.00 0.00 0.00 3.86
3015 3358 4.836175 TGAACCACTATGAACAGGACTGTA 59.164 41.667 5.25 0.00 44.13 2.74
3117 3460 3.579709 CACGTTATGAGAGCAACAGAGT 58.420 45.455 0.00 0.00 0.00 3.24
3144 3487 8.345565 AGAGAGTAAACATTCACACACAAATTC 58.654 33.333 0.00 0.00 0.00 2.17
3234 3577 7.615365 ACTCCCTTTGCATCAAAATATAAGACA 59.385 33.333 0.00 0.00 32.75 3.41
3250 3593 2.128771 TTGGATGCTACTCCCTTTGC 57.871 50.000 0.00 0.00 34.12 3.68
3253 3596 2.649816 AGGTTTTGGATGCTACTCCCTT 59.350 45.455 0.00 0.00 34.12 3.95
3290 3633 9.516314 GAAAAATCTAAGACAATTAATTCGGGG 57.484 33.333 0.00 0.00 0.00 5.73
3340 3683 4.360951 TCTCCGTCCCAAATTAGTTGTT 57.639 40.909 0.00 0.00 35.23 2.83
3341 3684 4.569719 ATCTCCGTCCCAAATTAGTTGT 57.430 40.909 0.00 0.00 35.23 3.32
3342 3685 5.897377 AAATCTCCGTCCCAAATTAGTTG 57.103 39.130 0.00 0.00 36.94 3.16
3343 3686 7.173032 ACTAAAATCTCCGTCCCAAATTAGTT 58.827 34.615 0.00 0.00 29.43 2.24
3344 3687 6.718294 ACTAAAATCTCCGTCCCAAATTAGT 58.282 36.000 0.00 0.00 0.00 2.24
3345 3688 7.335924 TGAACTAAAATCTCCGTCCCAAATTAG 59.664 37.037 0.00 0.00 0.00 1.73
3386 3771 4.062293 CTGTTCCCAAATAAGTGTCGTGA 58.938 43.478 0.00 0.00 0.00 4.35
3401 3786 5.632034 AAACATATACTCCCTCTGTTCCC 57.368 43.478 0.00 0.00 0.00 3.97
3404 3789 9.213777 TCAAGATAAACATATACTCCCTCTGTT 57.786 33.333 0.00 0.00 0.00 3.16
3542 3927 9.209048 TGTGGCCTAATCTTCTTCTTAAGTATA 57.791 33.333 3.32 0.00 0.00 1.47
3543 3928 8.090788 TGTGGCCTAATCTTCTTCTTAAGTAT 57.909 34.615 3.32 0.00 0.00 2.12
3581 4033 4.640805 CACATCTCTTGCAAATTTGTGC 57.359 40.909 19.03 7.59 45.15 4.57
3582 4034 4.304110 AGCACATCTCTTGCAAATTTGTG 58.696 39.130 19.03 19.31 42.83 3.33
3861 4313 2.784596 CCGCCGCATTACACACAG 59.215 61.111 0.00 0.00 0.00 3.66
3957 4409 3.266772 TCCAAATCCATACAACAGGCTCT 59.733 43.478 0.00 0.00 0.00 4.09
3965 4417 6.873076 GCAAATTCAGTTCCAAATCCATACAA 59.127 34.615 0.00 0.00 0.00 2.41
4031 4486 1.993542 TACTTGCATTGCCGCATTTG 58.006 45.000 6.12 0.00 42.62 2.32
4105 4560 5.358090 TGCATCATCAAAGCAAGTCAAAAA 58.642 33.333 0.00 0.00 34.97 1.94
4220 4676 4.816385 CACTTCAGAAAAGCAACTACTCCA 59.184 41.667 0.00 0.00 0.00 3.86
4221 4677 4.816925 ACACTTCAGAAAAGCAACTACTCC 59.183 41.667 0.00 0.00 0.00 3.85
4276 4732 8.086522 GCCAGATGATACATTTATTCAGCAATT 58.913 33.333 0.00 0.00 0.00 2.32
4307 4763 0.537143 TGGGCAGCAATGAAGACGTT 60.537 50.000 0.00 0.00 0.00 3.99
4314 4770 0.111061 AGACAGTTGGGCAGCAATGA 59.889 50.000 0.00 0.00 0.00 2.57
4318 4774 1.372683 GAGAGACAGTTGGGCAGCA 59.627 57.895 0.00 0.00 0.00 4.41
4325 4781 6.088824 GGTTTATGCATTTGAGAGACAGTTG 58.911 40.000 3.54 0.00 0.00 3.16
4326 4782 5.769662 TGGTTTATGCATTTGAGAGACAGTT 59.230 36.000 3.54 0.00 0.00 3.16
4336 4792 7.922278 AGCATGTAAGTATGGTTTATGCATTTG 59.078 33.333 3.54 0.00 41.22 2.32
4346 4802 4.335416 ACAAGCAGCATGTAAGTATGGTT 58.665 39.130 0.18 0.00 36.71 3.67
4351 4807 9.443323 TTTATTAAGACAAGCAGCATGTAAGTA 57.557 29.630 2.57 0.00 39.31 2.24
4352 4808 7.921786 TTATTAAGACAAGCAGCATGTAAGT 57.078 32.000 2.57 0.00 39.31 2.24
4353 4809 8.454106 ACTTTATTAAGACAAGCAGCATGTAAG 58.546 33.333 2.57 4.64 35.07 2.34
4354 4810 8.335532 ACTTTATTAAGACAAGCAGCATGTAA 57.664 30.769 2.57 0.00 35.07 2.41
4361 4817 9.683069 ATTTGACAACTTTATTAAGACAAGCAG 57.317 29.630 0.00 0.00 35.30 4.24
4414 4870 4.857037 GTGAGAAAAGCAAAGAAAACACGT 59.143 37.500 0.00 0.00 0.00 4.49
4415 4871 4.856487 TGTGAGAAAAGCAAAGAAAACACG 59.144 37.500 0.00 0.00 0.00 4.49
4416 4872 6.892310 ATGTGAGAAAAGCAAAGAAAACAC 57.108 33.333 0.00 0.00 0.00 3.32
4417 4873 6.313411 CCAATGTGAGAAAAGCAAAGAAAACA 59.687 34.615 0.00 0.00 0.00 2.83
4418 4874 6.708676 CCAATGTGAGAAAAGCAAAGAAAAC 58.291 36.000 0.00 0.00 0.00 2.43
4420 4876 4.810491 GCCAATGTGAGAAAAGCAAAGAAA 59.190 37.500 0.00 0.00 0.00 2.52
4423 4879 3.492011 GTGCCAATGTGAGAAAAGCAAAG 59.508 43.478 0.00 0.00 0.00 2.77
4424 4880 3.132646 AGTGCCAATGTGAGAAAAGCAAA 59.867 39.130 0.00 0.00 0.00 3.68
4425 4881 2.694628 AGTGCCAATGTGAGAAAAGCAA 59.305 40.909 0.00 0.00 0.00 3.91
4427 4883 2.669364 CAGTGCCAATGTGAGAAAAGC 58.331 47.619 0.00 0.00 0.00 3.51
4430 4886 1.881973 GAGCAGTGCCAATGTGAGAAA 59.118 47.619 12.58 0.00 0.00 2.52
4431 4887 1.072806 AGAGCAGTGCCAATGTGAGAA 59.927 47.619 12.58 0.00 0.00 2.87
4432 4888 0.689055 AGAGCAGTGCCAATGTGAGA 59.311 50.000 12.58 0.00 0.00 3.27
4433 4889 0.803117 CAGAGCAGTGCCAATGTGAG 59.197 55.000 12.58 0.00 0.00 3.51
4435 4891 0.240145 CACAGAGCAGTGCCAATGTG 59.760 55.000 22.72 22.72 33.14 3.21
4436 4892 0.179009 ACACAGAGCAGTGCCAATGT 60.179 50.000 12.58 11.45 43.23 2.71
4437 4893 0.956633 AACACAGAGCAGTGCCAATG 59.043 50.000 12.58 10.76 43.23 2.82
4438 4894 1.696063 AAACACAGAGCAGTGCCAAT 58.304 45.000 12.58 0.00 43.23 3.16
4439 4895 1.405105 GAAAACACAGAGCAGTGCCAA 59.595 47.619 12.58 0.00 43.23 4.52
4440 4896 1.024271 GAAAACACAGAGCAGTGCCA 58.976 50.000 12.58 0.00 43.23 4.92
4441 4897 1.312815 AGAAAACACAGAGCAGTGCC 58.687 50.000 12.58 3.25 43.23 5.01
4443 4899 3.111098 GCAAAGAAAACACAGAGCAGTG 58.889 45.455 2.88 2.88 44.93 3.66
4444 4900 3.019564 AGCAAAGAAAACACAGAGCAGT 58.980 40.909 0.00 0.00 0.00 4.40
4445 4901 3.705043 AGCAAAGAAAACACAGAGCAG 57.295 42.857 0.00 0.00 0.00 4.24
4447 4903 5.105063 AGAAAAGCAAAGAAAACACAGAGC 58.895 37.500 0.00 0.00 0.00 4.09
4448 4904 6.252228 GTGAGAAAAGCAAAGAAAACACAGAG 59.748 38.462 0.00 0.00 0.00 3.35
4449 4905 6.092748 GTGAGAAAAGCAAAGAAAACACAGA 58.907 36.000 0.00 0.00 0.00 3.41
4450 4906 5.863397 TGTGAGAAAAGCAAAGAAAACACAG 59.137 36.000 0.00 0.00 32.27 3.66
4451 4907 5.777802 TGTGAGAAAAGCAAAGAAAACACA 58.222 33.333 0.00 0.00 33.30 3.72
4453 4909 6.313411 CCAATGTGAGAAAAGCAAAGAAAACA 59.687 34.615 0.00 0.00 0.00 2.83
4455 4911 5.294060 GCCAATGTGAGAAAAGCAAAGAAAA 59.706 36.000 0.00 0.00 0.00 2.29
4457 4913 4.141981 TGCCAATGTGAGAAAAGCAAAGAA 60.142 37.500 0.00 0.00 0.00 2.52
4458 4914 3.384146 TGCCAATGTGAGAAAAGCAAAGA 59.616 39.130 0.00 0.00 0.00 2.52
4459 4915 3.492011 GTGCCAATGTGAGAAAAGCAAAG 59.508 43.478 0.00 0.00 0.00 2.77
4460 4916 3.132646 AGTGCCAATGTGAGAAAAGCAAA 59.867 39.130 0.00 0.00 0.00 3.68
4461 4917 2.694628 AGTGCCAATGTGAGAAAAGCAA 59.305 40.909 0.00 0.00 0.00 3.91
4463 4919 2.669364 CAGTGCCAATGTGAGAAAAGC 58.331 47.619 0.00 0.00 0.00 3.51
4464 4920 2.295349 AGCAGTGCCAATGTGAGAAAAG 59.705 45.455 12.58 0.00 0.00 2.27
4465 4921 2.294233 GAGCAGTGCCAATGTGAGAAAA 59.706 45.455 12.58 0.00 0.00 2.29
4466 4922 1.881973 GAGCAGTGCCAATGTGAGAAA 59.118 47.619 12.58 0.00 0.00 2.52
4467 4923 1.072806 AGAGCAGTGCCAATGTGAGAA 59.927 47.619 12.58 0.00 0.00 2.87
4468 4924 0.689055 AGAGCAGTGCCAATGTGAGA 59.311 50.000 12.58 0.00 0.00 3.27
4469 4925 1.085091 GAGAGCAGTGCCAATGTGAG 58.915 55.000 12.58 0.00 0.00 3.51
4470 4926 0.689055 AGAGAGCAGTGCCAATGTGA 59.311 50.000 12.58 0.00 0.00 3.58
4471 4927 0.803117 CAGAGAGCAGTGCCAATGTG 59.197 55.000 12.58 2.97 0.00 3.21
4472 4928 0.689055 TCAGAGAGCAGTGCCAATGT 59.311 50.000 12.58 0.00 0.00 2.71
4473 4929 1.817357 TTCAGAGAGCAGTGCCAATG 58.183 50.000 12.58 6.19 0.00 2.82
4475 4931 3.701205 TTATTCAGAGAGCAGTGCCAA 57.299 42.857 12.58 0.00 0.00 4.52
4478 4934 4.502962 AGAGTTTATTCAGAGAGCAGTGC 58.497 43.478 7.13 7.13 0.00 4.40
4479 4935 5.806502 CAGAGAGTTTATTCAGAGAGCAGTG 59.193 44.000 0.00 0.00 0.00 3.66
4482 4938 5.714333 AGACAGAGAGTTTATTCAGAGAGCA 59.286 40.000 0.00 0.00 0.00 4.26
4484 4940 7.201785 GGGTAGACAGAGAGTTTATTCAGAGAG 60.202 44.444 0.00 0.00 0.00 3.20
4485 4941 6.603997 GGGTAGACAGAGAGTTTATTCAGAGA 59.396 42.308 0.00 0.00 0.00 3.10
4486 4942 6.605594 AGGGTAGACAGAGAGTTTATTCAGAG 59.394 42.308 0.00 0.00 0.00 3.35
4487 4943 6.494952 AGGGTAGACAGAGAGTTTATTCAGA 58.505 40.000 0.00 0.00 0.00 3.27
4490 4946 5.069383 GGGAGGGTAGACAGAGAGTTTATTC 59.931 48.000 0.00 0.00 0.00 1.75
4491 4947 4.963628 GGGAGGGTAGACAGAGAGTTTATT 59.036 45.833 0.00 0.00 0.00 1.40
4493 4949 3.309701 GGGGAGGGTAGACAGAGAGTTTA 60.310 52.174 0.00 0.00 0.00 2.01
4494 4950 2.560158 GGGGAGGGTAGACAGAGAGTTT 60.560 54.545 0.00 0.00 0.00 2.66
4495 4951 1.007359 GGGGAGGGTAGACAGAGAGTT 59.993 57.143 0.00 0.00 0.00 3.01
4497 4953 0.930726 AGGGGAGGGTAGACAGAGAG 59.069 60.000 0.00 0.00 0.00 3.20
4500 4956 0.335361 GTCAGGGGAGGGTAGACAGA 59.665 60.000 0.00 0.00 0.00 3.41
4503 4959 0.397394 GAGGTCAGGGGAGGGTAGAC 60.397 65.000 0.00 0.00 0.00 2.59
4504 4960 1.591280 GGAGGTCAGGGGAGGGTAGA 61.591 65.000 0.00 0.00 0.00 2.59
4505 4961 1.075151 GGAGGTCAGGGGAGGGTAG 60.075 68.421 0.00 0.00 0.00 3.18
4506 4962 1.549322 AGGAGGTCAGGGGAGGGTA 60.549 63.158 0.00 0.00 0.00 3.69
4508 4964 1.886730 TACAGGAGGTCAGGGGAGGG 61.887 65.000 0.00 0.00 0.00 4.30
4509 4965 0.266152 ATACAGGAGGTCAGGGGAGG 59.734 60.000 0.00 0.00 0.00 4.30
4511 4967 1.344087 GGAATACAGGAGGTCAGGGGA 60.344 57.143 0.00 0.00 0.00 4.81
4513 4969 2.182516 AGGAATACAGGAGGTCAGGG 57.817 55.000 0.00 0.00 0.00 4.45
4514 4970 2.436173 GGAAGGAATACAGGAGGTCAGG 59.564 54.545 0.00 0.00 0.00 3.86
4515 4971 3.133721 CAGGAAGGAATACAGGAGGTCAG 59.866 52.174 0.00 0.00 0.00 3.51
4517 4973 3.375699 TCAGGAAGGAATACAGGAGGTC 58.624 50.000 0.00 0.00 0.00 3.85
4518 4974 3.491766 TCAGGAAGGAATACAGGAGGT 57.508 47.619 0.00 0.00 0.00 3.85
4521 4977 3.519510 CCACTTCAGGAAGGAATACAGGA 59.480 47.826 13.19 0.00 42.53 3.86
4523 4979 4.826274 TCCACTTCAGGAAGGAATACAG 57.174 45.455 13.19 0.00 42.53 2.74
4524 4980 5.779241 AATCCACTTCAGGAAGGAATACA 57.221 39.130 13.19 0.00 41.92 2.29
4525 4981 5.358160 CCAAATCCACTTCAGGAAGGAATAC 59.642 44.000 13.19 0.00 41.92 1.89
4526 4982 5.252863 TCCAAATCCACTTCAGGAAGGAATA 59.747 40.000 13.19 0.00 41.92 1.75
4527 4983 4.044571 TCCAAATCCACTTCAGGAAGGAAT 59.955 41.667 13.19 1.62 41.92 3.01
4528 4984 3.397618 TCCAAATCCACTTCAGGAAGGAA 59.602 43.478 13.19 0.00 41.92 3.36
4529 4985 2.986019 TCCAAATCCACTTCAGGAAGGA 59.014 45.455 13.19 3.56 41.92 3.36
4530 4986 3.084786 GTCCAAATCCACTTCAGGAAGG 58.915 50.000 13.19 2.98 41.92 3.46
4531 4987 3.754965 TGTCCAAATCCACTTCAGGAAG 58.245 45.455 7.47 7.47 41.92 3.46
4532 4988 3.874383 TGTCCAAATCCACTTCAGGAA 57.126 42.857 0.00 0.00 41.92 3.36
4533 4989 3.074390 ACATGTCCAAATCCACTTCAGGA 59.926 43.478 0.00 0.00 43.01 3.86
4534 4990 3.192001 CACATGTCCAAATCCACTTCAGG 59.808 47.826 0.00 0.00 0.00 3.86
4535 4991 3.822735 ACACATGTCCAAATCCACTTCAG 59.177 43.478 0.00 0.00 0.00 3.02
4548 5305 8.198109 AGTATCACTTTCTGTATACACATGTCC 58.802 37.037 0.08 0.00 33.14 4.02
4555 5312 9.946165 CGTAATCAGTATCACTTTCTGTATACA 57.054 33.333 5.25 5.25 0.00 2.29
4574 5331 1.747355 GGAACCTCTCGGTCGTAATCA 59.253 52.381 0.00 0.00 44.73 2.57
4580 5337 1.949847 ATGCAGGAACCTCTCGGTCG 61.950 60.000 0.00 0.00 44.73 4.79
4583 5340 1.144936 GGATGCAGGAACCTCTCGG 59.855 63.158 0.00 0.00 0.00 4.63
4591 5348 2.259917 TCAGTCTCAAGGATGCAGGAA 58.740 47.619 0.00 0.00 0.00 3.36
4628 5385 1.951602 GCATAATCAGCCACATCAGCA 59.048 47.619 0.00 0.00 0.00 4.41
4724 5481 2.564062 AGACAAATCCATGGCACCAAAG 59.436 45.455 6.96 0.00 0.00 2.77
4749 5506 0.318275 GTGGGTTCGCAAAATCGCAA 60.318 50.000 0.00 0.00 0.00 4.85
4750 5507 1.169661 AGTGGGTTCGCAAAATCGCA 61.170 50.000 0.00 0.00 0.00 5.10
4751 5508 0.729140 CAGTGGGTTCGCAAAATCGC 60.729 55.000 0.00 0.00 0.00 4.58
4752 5509 0.109781 CCAGTGGGTTCGCAAAATCG 60.110 55.000 0.00 0.00 0.00 3.34
4753 5510 0.243636 CCCAGTGGGTTCGCAAAATC 59.756 55.000 21.24 0.00 38.25 2.17
4754 5511 0.178975 TCCCAGTGGGTTCGCAAAAT 60.179 50.000 27.87 0.00 44.74 1.82
4755 5512 0.821711 CTCCCAGTGGGTTCGCAAAA 60.822 55.000 27.87 4.88 44.74 2.44
4756 5513 1.228124 CTCCCAGTGGGTTCGCAAA 60.228 57.895 27.87 5.67 44.74 3.68
4767 5524 2.508526 GCTTGAAACATCACTCCCAGT 58.491 47.619 0.00 0.00 0.00 4.00
4777 5534 2.224079 CAGCACAGTACGCTTGAAACAT 59.776 45.455 0.00 0.00 37.72 2.71
4883 5642 4.253685 TGTTAATACTCTTGCTGCTGTCC 58.746 43.478 0.00 0.00 0.00 4.02
4921 5682 2.573462 TCAGGCACTAAAAGCATCTCCT 59.427 45.455 0.00 0.00 36.02 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.