Multiple sequence alignment - TraesCS4D01G115700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G115700 chr4D 100.000 2825 0 0 1 2825 96710865 96713689 0.000000e+00 5217
1 TraesCS4D01G115700 chr4D 91.392 2428 146 25 421 2823 96891637 96894026 0.000000e+00 3267
2 TraesCS4D01G115700 chr4D 100.000 549 0 0 3169 3717 96714033 96714581 0.000000e+00 1014
3 TraesCS4D01G115700 chr4A 96.581 2340 62 11 504 2825 479625505 479623166 0.000000e+00 3862
4 TraesCS4D01G115700 chr4A 95.332 2292 89 9 483 2765 479904308 479902026 0.000000e+00 3624
5 TraesCS4D01G115700 chr4A 92.166 2336 158 10 492 2823 481065532 481063218 0.000000e+00 3277
6 TraesCS4D01G115700 chr4A 96.933 1956 55 3 875 2825 480558132 480556177 0.000000e+00 3275
7 TraesCS4D01G115700 chr4A 96.158 1900 67 4 875 2769 479431440 479429542 0.000000e+00 3099
8 TraesCS4D01G115700 chr4A 93.804 694 35 5 483 1171 479647843 479647153 0.000000e+00 1037
9 TraesCS4D01G115700 chr4A 98.543 549 8 0 3169 3717 479623122 479622574 0.000000e+00 970
10 TraesCS4D01G115700 chr4A 93.715 541 27 4 2286 2825 479620970 479620436 0.000000e+00 804
11 TraesCS4D01G115700 chr4A 93.455 550 16 5 3169 3717 480556138 480555608 0.000000e+00 798
12 TraesCS4D01G115700 chr4A 94.215 363 15 2 483 844 479431792 479431435 1.950000e-152 549
13 TraesCS4D01G115700 chr4A 93.939 363 16 2 483 844 480558484 480558127 9.080000e-151 544
14 TraesCS4D01G115700 chr4A 92.084 379 26 2 3201 3578 479615155 479614780 7.070000e-147 531
15 TraesCS4D01G115700 chr4A 90.086 232 20 3 3169 3400 479901968 479901740 7.800000e-77 298
16 TraesCS4D01G115700 chr4B 92.773 2297 103 22 483 2765 137701670 137703917 0.000000e+00 3264
17 TraesCS4D01G115700 chr4B 96.016 1481 54 2 1289 2769 138276147 138277622 0.000000e+00 2403
18 TraesCS4D01G115700 chr4B 88.506 522 14 16 786 1293 138275734 138276223 1.150000e-164 590
19 TraesCS4D01G115700 chr4B 89.130 276 26 4 483 757 138275468 138275740 1.280000e-89 340
20 TraesCS4D01G115700 chr7B 87.539 1292 149 9 1289 2577 20721572 20720290 0.000000e+00 1483
21 TraesCS4D01G115700 chr7A 87.160 1285 152 11 1289 2568 79335044 79333768 0.000000e+00 1447
22 TraesCS4D01G115700 chr7A 86.567 469 42 12 842 1293 79335432 79334968 7.170000e-137 497
23 TraesCS4D01G115700 chr2B 86.588 425 53 3 1 422 760360818 760361241 2.020000e-127 466
24 TraesCS4D01G115700 chr6A 86.260 393 46 7 1 389 260484267 260483879 1.600000e-113 420
25 TraesCS4D01G115700 chr7D 78.445 283 39 17 154 418 532375062 532374784 8.260000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G115700 chr4D 96710865 96714581 3716 False 3115.500000 5217 100.000000 1 3717 2 chr4D.!!$F2 3716
1 TraesCS4D01G115700 chr4D 96891637 96894026 2389 False 3267.000000 3267 91.392000 421 2823 1 chr4D.!!$F1 2402
2 TraesCS4D01G115700 chr4A 481063218 481065532 2314 True 3277.000000 3277 92.166000 492 2823 1 chr4A.!!$R3 2331
3 TraesCS4D01G115700 chr4A 479901740 479904308 2568 True 1961.000000 3624 92.709000 483 3400 2 chr4A.!!$R6 2917
4 TraesCS4D01G115700 chr4A 479620436 479625505 5069 True 1878.666667 3862 96.279667 504 3717 3 chr4A.!!$R5 3213
5 TraesCS4D01G115700 chr4A 479429542 479431792 2250 True 1824.000000 3099 95.186500 483 2769 2 chr4A.!!$R4 2286
6 TraesCS4D01G115700 chr4A 480555608 480558484 2876 True 1539.000000 3275 94.775667 483 3717 3 chr4A.!!$R7 3234
7 TraesCS4D01G115700 chr4A 479647153 479647843 690 True 1037.000000 1037 93.804000 483 1171 1 chr4A.!!$R2 688
8 TraesCS4D01G115700 chr4B 137701670 137703917 2247 False 3264.000000 3264 92.773000 483 2765 1 chr4B.!!$F1 2282
9 TraesCS4D01G115700 chr4B 138275468 138277622 2154 False 1111.000000 2403 91.217333 483 2769 3 chr4B.!!$F2 2286
10 TraesCS4D01G115700 chr7B 20720290 20721572 1282 True 1483.000000 1483 87.539000 1289 2577 1 chr7B.!!$R1 1288
11 TraesCS4D01G115700 chr7A 79333768 79335432 1664 True 972.000000 1447 86.863500 842 2568 2 chr7A.!!$R1 1726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.036010 GCGAGTGGGGGATGGATATG 60.036 60.0 0.00 0.00 0.00 1.78 F
268 269 0.036732 GGGGATGGATATGCGCAAGA 59.963 55.0 17.11 5.87 37.50 3.02 F
415 416 0.041926 CACCGGTTCGAAACGTTTCC 60.042 55.0 31.49 18.43 33.68 3.13 F
417 418 0.881600 CCGGTTCGAAACGTTTCCCT 60.882 55.0 31.49 2.37 33.68 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1096 1143 1.001181 GGAGCAATTGCAAAAGCAGGA 59.999 47.619 30.89 0.0 45.16 3.86 R
2066 2116 1.305802 TGGCGGTAGGACCAGTGAT 60.306 57.895 0.00 0.0 38.47 3.06 R
2464 2517 3.778629 GGGACACAATTTCCTCCCTACTA 59.221 47.826 4.42 0.0 39.59 1.82 R
2765 2821 7.912056 TGTGAATAGGAAAGAAATGTGAGAG 57.088 36.000 0.00 0.0 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.171635 GTTGCAACTCATCCCGTCC 58.828 57.895 22.36 0.00 0.00 4.79
19 20 0.605319 GTTGCAACTCATCCCGTCCA 60.605 55.000 22.36 0.00 0.00 4.02
20 21 0.605319 TTGCAACTCATCCCGTCCAC 60.605 55.000 0.00 0.00 0.00 4.02
21 22 1.745489 GCAACTCATCCCGTCCACC 60.745 63.158 0.00 0.00 0.00 4.61
22 23 1.676968 CAACTCATCCCGTCCACCA 59.323 57.895 0.00 0.00 0.00 4.17
23 24 0.391661 CAACTCATCCCGTCCACCAG 60.392 60.000 0.00 0.00 0.00 4.00
24 25 1.553690 AACTCATCCCGTCCACCAGG 61.554 60.000 0.00 0.00 0.00 4.45
25 26 1.990060 CTCATCCCGTCCACCAGGT 60.990 63.158 0.00 0.00 35.89 4.00
26 27 2.244117 CTCATCCCGTCCACCAGGTG 62.244 65.000 13.35 13.35 35.89 4.00
27 28 2.203938 ATCCCGTCCACCAGGTGT 60.204 61.111 18.82 0.00 35.89 4.16
28 29 1.079621 ATCCCGTCCACCAGGTGTA 59.920 57.895 18.82 0.00 35.89 2.90
29 30 0.976073 ATCCCGTCCACCAGGTGTAG 60.976 60.000 18.82 8.79 35.89 2.74
30 31 2.264794 CCGTCCACCAGGTGTAGC 59.735 66.667 18.82 6.99 35.89 3.58
31 32 2.283529 CCGTCCACCAGGTGTAGCT 61.284 63.158 18.82 0.00 35.89 3.32
32 33 1.215647 CGTCCACCAGGTGTAGCTC 59.784 63.158 18.82 3.23 35.89 4.09
33 34 1.597461 GTCCACCAGGTGTAGCTCC 59.403 63.158 18.82 0.00 35.89 4.70
34 35 1.157513 TCCACCAGGTGTAGCTCCA 59.842 57.895 18.82 0.00 35.89 3.86
35 36 1.192146 TCCACCAGGTGTAGCTCCAC 61.192 60.000 18.82 0.00 35.89 4.02
40 41 4.065281 GGTGTAGCTCCACCGCGT 62.065 66.667 13.24 0.00 45.03 6.01
41 42 2.703798 GGTGTAGCTCCACCGCGTA 61.704 63.158 13.24 0.00 45.03 4.42
42 43 1.515736 GTGTAGCTCCACCGCGTAC 60.516 63.158 4.92 0.00 34.40 3.67
43 44 1.676635 TGTAGCTCCACCGCGTACT 60.677 57.895 4.92 0.00 34.40 2.73
44 45 1.246056 TGTAGCTCCACCGCGTACTT 61.246 55.000 4.92 0.00 34.40 2.24
45 46 0.525029 GTAGCTCCACCGCGTACTTC 60.525 60.000 4.92 0.00 34.40 3.01
46 47 1.660560 TAGCTCCACCGCGTACTTCC 61.661 60.000 4.92 0.00 34.40 3.46
47 48 3.003113 GCTCCACCGCGTACTTCCT 62.003 63.158 4.92 0.00 0.00 3.36
48 49 1.139095 CTCCACCGCGTACTTCCTC 59.861 63.158 4.92 0.00 0.00 3.71
49 50 2.183555 CCACCGCGTACTTCCTCC 59.816 66.667 4.92 0.00 0.00 4.30
50 51 2.348888 CCACCGCGTACTTCCTCCT 61.349 63.158 4.92 0.00 0.00 3.69
51 52 1.139095 CACCGCGTACTTCCTCCTC 59.861 63.158 4.92 0.00 0.00 3.71
52 53 2.050934 ACCGCGTACTTCCTCCTCC 61.051 63.158 4.92 0.00 0.00 4.30
53 54 2.408022 CGCGTACTTCCTCCTCCG 59.592 66.667 0.00 0.00 0.00 4.63
54 55 2.404995 CGCGTACTTCCTCCTCCGT 61.405 63.158 0.00 0.00 0.00 4.69
55 56 1.432657 GCGTACTTCCTCCTCCGTC 59.567 63.158 0.00 0.00 0.00 4.79
56 57 2.002509 GCGTACTTCCTCCTCCGTCC 62.003 65.000 0.00 0.00 0.00 4.79
57 58 0.679002 CGTACTTCCTCCTCCGTCCA 60.679 60.000 0.00 0.00 0.00 4.02
58 59 0.816373 GTACTTCCTCCTCCGTCCAC 59.184 60.000 0.00 0.00 0.00 4.02
59 60 0.324091 TACTTCCTCCTCCGTCCACC 60.324 60.000 0.00 0.00 0.00 4.61
60 61 2.678934 TTCCTCCTCCGTCCACCG 60.679 66.667 0.00 0.00 0.00 4.94
80 81 3.708210 GACCCGTGGTCCATCAGA 58.292 61.111 10.92 0.00 46.19 3.27
81 82 1.218316 GACCCGTGGTCCATCAGAC 59.782 63.158 10.92 0.00 46.19 3.51
82 83 2.558554 GACCCGTGGTCCATCAGACG 62.559 65.000 10.92 0.00 46.19 4.18
88 89 4.530857 GTCCATCAGACGGGGGCG 62.531 72.222 0.00 0.00 35.30 6.13
90 91 4.530857 CCATCAGACGGGGGCGTC 62.531 72.222 0.00 0.00 39.01 5.19
91 92 4.873129 CATCAGACGGGGGCGTCG 62.873 72.222 0.00 0.00 43.02 5.12
102 103 4.467084 GGCGTCGGGGAGCATGAA 62.467 66.667 0.00 0.00 34.54 2.57
103 104 2.203070 GCGTCGGGGAGCATGAAT 60.203 61.111 0.00 0.00 0.00 2.57
104 105 2.537560 GCGTCGGGGAGCATGAATG 61.538 63.158 0.00 0.00 0.00 2.67
105 106 1.889105 CGTCGGGGAGCATGAATGG 60.889 63.158 0.00 0.00 0.00 3.16
106 107 1.526917 GTCGGGGAGCATGAATGGG 60.527 63.158 0.00 0.00 0.00 4.00
107 108 1.692395 TCGGGGAGCATGAATGGGA 60.692 57.895 0.00 0.00 0.00 4.37
108 109 1.228063 CGGGGAGCATGAATGGGAG 60.228 63.158 0.00 0.00 0.00 4.30
109 110 1.152368 GGGGAGCATGAATGGGAGG 59.848 63.158 0.00 0.00 0.00 4.30
110 111 1.530183 GGGAGCATGAATGGGAGGC 60.530 63.158 0.00 0.00 0.00 4.70
111 112 1.530183 GGAGCATGAATGGGAGGCC 60.530 63.158 0.00 0.00 0.00 5.19
112 113 1.530183 GAGCATGAATGGGAGGCCC 60.530 63.158 0.00 0.00 45.71 5.80
123 124 2.516460 GAGGCCCGACGAGCTCTA 60.516 66.667 12.85 0.00 0.00 2.43
124 125 2.044252 AGGCCCGACGAGCTCTAA 60.044 61.111 12.85 0.00 0.00 2.10
125 126 1.664321 GAGGCCCGACGAGCTCTAAA 61.664 60.000 12.85 0.00 0.00 1.85
126 127 1.227002 GGCCCGACGAGCTCTAAAG 60.227 63.158 12.85 0.00 0.00 1.85
127 128 1.664321 GGCCCGACGAGCTCTAAAGA 61.664 60.000 12.85 0.00 0.00 2.52
128 129 0.386113 GCCCGACGAGCTCTAAAGAT 59.614 55.000 12.85 0.00 0.00 2.40
129 130 1.607628 GCCCGACGAGCTCTAAAGATA 59.392 52.381 12.85 0.00 0.00 1.98
130 131 2.034305 GCCCGACGAGCTCTAAAGATAA 59.966 50.000 12.85 0.00 0.00 1.75
131 132 3.490419 GCCCGACGAGCTCTAAAGATAAA 60.490 47.826 12.85 0.00 0.00 1.40
132 133 4.679662 CCCGACGAGCTCTAAAGATAAAA 58.320 43.478 12.85 0.00 0.00 1.52
133 134 4.740695 CCCGACGAGCTCTAAAGATAAAAG 59.259 45.833 12.85 0.00 0.00 2.27
134 135 4.740695 CCGACGAGCTCTAAAGATAAAAGG 59.259 45.833 12.85 0.00 0.00 3.11
135 136 5.450137 CCGACGAGCTCTAAAGATAAAAGGA 60.450 44.000 12.85 0.00 0.00 3.36
136 137 5.683743 CGACGAGCTCTAAAGATAAAAGGAG 59.316 44.000 12.85 0.00 0.00 3.69
137 138 6.458478 CGACGAGCTCTAAAGATAAAAGGAGA 60.458 42.308 12.85 0.00 0.00 3.71
138 139 7.171630 ACGAGCTCTAAAGATAAAAGGAGAA 57.828 36.000 12.85 0.00 0.00 2.87
139 140 7.612677 ACGAGCTCTAAAGATAAAAGGAGAAA 58.387 34.615 12.85 0.00 0.00 2.52
140 141 8.095169 ACGAGCTCTAAAGATAAAAGGAGAAAA 58.905 33.333 12.85 0.00 0.00 2.29
141 142 8.936864 CGAGCTCTAAAGATAAAAGGAGAAAAA 58.063 33.333 12.85 0.00 0.00 1.94
143 144 9.015367 AGCTCTAAAGATAAAAGGAGAAAAACC 57.985 33.333 0.00 0.00 0.00 3.27
144 145 9.015367 GCTCTAAAGATAAAAGGAGAAAAACCT 57.985 33.333 0.00 0.00 39.69 3.50
146 147 9.216117 TCTAAAGATAAAAGGAGAAAAACCTCG 57.784 33.333 0.00 0.00 36.67 4.63
147 148 7.818997 AAAGATAAAAGGAGAAAAACCTCGT 57.181 32.000 0.00 0.00 36.67 4.18
148 149 7.436430 AAGATAAAAGGAGAAAAACCTCGTC 57.564 36.000 0.00 0.00 36.67 4.20
149 150 5.638234 AGATAAAAGGAGAAAAACCTCGTCG 59.362 40.000 0.00 0.00 36.67 5.12
150 151 2.165319 AAGGAGAAAAACCTCGTCGG 57.835 50.000 0.00 0.00 36.67 4.79
151 152 1.335145 AGGAGAAAAACCTCGTCGGA 58.665 50.000 0.00 0.00 36.31 4.55
152 153 1.690352 AGGAGAAAAACCTCGTCGGAA 59.310 47.619 0.00 0.00 36.31 4.30
153 154 2.103601 AGGAGAAAAACCTCGTCGGAAA 59.896 45.455 0.00 0.00 36.31 3.13
154 155 2.479275 GGAGAAAAACCTCGTCGGAAAG 59.521 50.000 0.00 0.00 36.31 2.62
155 156 3.387397 GAGAAAAACCTCGTCGGAAAGA 58.613 45.455 0.00 0.00 36.31 2.52
156 157 3.391049 AGAAAAACCTCGTCGGAAAGAG 58.609 45.455 0.00 5.14 36.31 2.85
159 160 4.891566 CCTCGTCGGAAAGAGGTG 57.108 61.111 17.76 0.25 46.68 4.00
160 161 2.264124 CCTCGTCGGAAAGAGGTGA 58.736 57.895 17.76 0.00 46.68 4.02
161 162 0.601558 CCTCGTCGGAAAGAGGTGAA 59.398 55.000 17.76 0.00 46.68 3.18
162 163 1.402984 CCTCGTCGGAAAGAGGTGAAG 60.403 57.143 17.76 0.00 46.68 3.02
163 164 1.540267 CTCGTCGGAAAGAGGTGAAGA 59.460 52.381 0.00 0.00 36.24 2.87
164 165 1.540267 TCGTCGGAAAGAGGTGAAGAG 59.460 52.381 0.00 0.00 36.24 2.85
165 166 1.540267 CGTCGGAAAGAGGTGAAGAGA 59.460 52.381 0.00 0.00 0.00 3.10
166 167 2.414824 CGTCGGAAAGAGGTGAAGAGAG 60.415 54.545 0.00 0.00 0.00 3.20
167 168 2.094442 GTCGGAAAGAGGTGAAGAGAGG 60.094 54.545 0.00 0.00 0.00 3.69
168 169 1.404851 CGGAAAGAGGTGAAGAGAGGC 60.405 57.143 0.00 0.00 0.00 4.70
169 170 1.625818 GGAAAGAGGTGAAGAGAGGCA 59.374 52.381 0.00 0.00 0.00 4.75
170 171 2.354604 GGAAAGAGGTGAAGAGAGGCAG 60.355 54.545 0.00 0.00 0.00 4.85
171 172 1.274712 AAGAGGTGAAGAGAGGCAGG 58.725 55.000 0.00 0.00 0.00 4.85
172 173 0.617249 AGAGGTGAAGAGAGGCAGGG 60.617 60.000 0.00 0.00 0.00 4.45
173 174 1.614824 AGGTGAAGAGAGGCAGGGG 60.615 63.158 0.00 0.00 0.00 4.79
174 175 1.613630 GGTGAAGAGAGGCAGGGGA 60.614 63.158 0.00 0.00 0.00 4.81
175 176 0.985490 GGTGAAGAGAGGCAGGGGAT 60.985 60.000 0.00 0.00 0.00 3.85
176 177 0.179936 GTGAAGAGAGGCAGGGGATG 59.820 60.000 0.00 0.00 0.00 3.51
185 186 4.227134 CAGGGGATGCCTCGTCGG 62.227 72.222 2.19 0.00 0.00 4.79
186 187 4.779733 AGGGGATGCCTCGTCGGT 62.780 66.667 2.19 0.00 34.25 4.69
187 188 4.530857 GGGGATGCCTCGTCGGTG 62.531 72.222 2.19 0.00 34.25 4.94
188 189 4.530857 GGGATGCCTCGTCGGTGG 62.531 72.222 0.00 0.00 34.25 4.61
189 190 3.771160 GGATGCCTCGTCGGTGGT 61.771 66.667 6.97 0.00 34.25 4.16
190 191 2.509336 GATGCCTCGTCGGTGGTG 60.509 66.667 6.97 0.00 34.25 4.17
191 192 4.082523 ATGCCTCGTCGGTGGTGG 62.083 66.667 6.97 0.00 34.25 4.61
194 195 4.436998 CCTCGTCGGTGGTGGCTC 62.437 72.222 0.00 0.00 0.00 4.70
195 196 4.778415 CTCGTCGGTGGTGGCTCG 62.778 72.222 0.00 0.00 0.00 5.03
204 205 4.388499 GGTGGCTCGCCGGAGAAA 62.388 66.667 9.83 0.00 43.27 2.52
205 206 2.358247 GTGGCTCGCCGGAGAAAA 60.358 61.111 9.83 0.00 43.27 2.29
206 207 2.358247 TGGCTCGCCGGAGAAAAC 60.358 61.111 9.83 2.94 43.27 2.43
207 208 3.125573 GGCTCGCCGGAGAAAACC 61.126 66.667 9.83 7.57 43.27 3.27
208 209 2.358247 GCTCGCCGGAGAAAACCA 60.358 61.111 9.83 0.00 43.27 3.67
209 210 2.677979 GCTCGCCGGAGAAAACCAC 61.678 63.158 9.83 0.00 43.27 4.16
210 211 2.356553 TCGCCGGAGAAAACCACG 60.357 61.111 5.05 0.00 0.00 4.94
213 214 2.281208 CCGGAGAAAACCACGGCA 60.281 61.111 0.00 0.00 39.85 5.69
214 215 2.613506 CCGGAGAAAACCACGGCAC 61.614 63.158 0.00 0.00 39.85 5.01
215 216 1.597027 CGGAGAAAACCACGGCACT 60.597 57.895 0.00 0.00 0.00 4.40
216 217 1.841663 CGGAGAAAACCACGGCACTG 61.842 60.000 0.00 0.00 0.00 3.66
217 218 1.515521 GGAGAAAACCACGGCACTGG 61.516 60.000 0.00 0.00 37.33 4.00
218 219 2.130073 GAGAAAACCACGGCACTGGC 62.130 60.000 0.00 0.00 34.20 4.85
236 237 4.100084 CGGAGCCAGGCACATGGA 62.100 66.667 15.80 0.00 43.57 3.41
237 238 2.124403 GGAGCCAGGCACATGGAG 60.124 66.667 15.80 0.00 43.57 3.86
238 239 2.673200 GGAGCCAGGCACATGGAGA 61.673 63.158 15.80 0.00 43.57 3.71
239 240 1.153208 GAGCCAGGCACATGGAGAG 60.153 63.158 15.80 0.00 43.57 3.20
240 241 1.614525 AGCCAGGCACATGGAGAGA 60.615 57.895 15.80 0.00 43.57 3.10
241 242 1.153208 GCCAGGCACATGGAGAGAG 60.153 63.158 6.55 0.00 43.57 3.20
242 243 1.525923 CCAGGCACATGGAGAGAGG 59.474 63.158 0.00 0.00 43.57 3.69
243 244 1.153208 CAGGCACATGGAGAGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
244 245 2.202987 GGCACATGGAGAGAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
245 246 2.725312 GGCACATGGAGAGAGGCGA 61.725 63.158 0.00 0.00 0.00 5.54
246 247 1.227205 GCACATGGAGAGAGGCGAG 60.227 63.158 0.00 0.00 0.00 5.03
247 248 1.954362 GCACATGGAGAGAGGCGAGT 61.954 60.000 0.00 0.00 0.00 4.18
248 249 0.179116 CACATGGAGAGAGGCGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
249 250 1.326213 ACATGGAGAGAGGCGAGTGG 61.326 60.000 0.00 0.00 0.00 4.00
250 251 1.760086 ATGGAGAGAGGCGAGTGGG 60.760 63.158 0.00 0.00 0.00 4.61
251 252 3.151022 GGAGAGAGGCGAGTGGGG 61.151 72.222 0.00 0.00 0.00 4.96
252 253 3.151022 GAGAGAGGCGAGTGGGGG 61.151 72.222 0.00 0.00 0.00 5.40
253 254 3.663815 GAGAGAGGCGAGTGGGGGA 62.664 68.421 0.00 0.00 0.00 4.81
254 255 2.444895 GAGAGGCGAGTGGGGGAT 60.445 66.667 0.00 0.00 0.00 3.85
255 256 2.765807 AGAGGCGAGTGGGGGATG 60.766 66.667 0.00 0.00 0.00 3.51
256 257 3.866582 GAGGCGAGTGGGGGATGG 61.867 72.222 0.00 0.00 0.00 3.51
257 258 4.414956 AGGCGAGTGGGGGATGGA 62.415 66.667 0.00 0.00 0.00 3.41
258 259 3.171388 GGCGAGTGGGGGATGGAT 61.171 66.667 0.00 0.00 0.00 3.41
259 260 1.841556 GGCGAGTGGGGGATGGATA 60.842 63.158 0.00 0.00 0.00 2.59
260 261 1.201429 GGCGAGTGGGGGATGGATAT 61.201 60.000 0.00 0.00 0.00 1.63
261 262 0.036010 GCGAGTGGGGGATGGATATG 60.036 60.000 0.00 0.00 0.00 1.78
262 263 0.036010 CGAGTGGGGGATGGATATGC 60.036 60.000 0.00 0.00 0.00 3.14
263 264 0.036010 GAGTGGGGGATGGATATGCG 60.036 60.000 0.00 0.00 0.00 4.73
264 265 1.675641 GTGGGGGATGGATATGCGC 60.676 63.158 0.00 0.00 36.95 6.09
265 266 2.152729 TGGGGGATGGATATGCGCA 61.153 57.895 14.96 14.96 38.97 6.09
266 267 1.074775 GGGGGATGGATATGCGCAA 59.925 57.895 17.11 4.13 38.97 4.85
267 268 0.962356 GGGGGATGGATATGCGCAAG 60.962 60.000 17.11 0.00 38.97 4.01
268 269 0.036732 GGGGATGGATATGCGCAAGA 59.963 55.000 17.11 5.87 37.50 3.02
269 270 1.446907 GGGATGGATATGCGCAAGAG 58.553 55.000 17.11 0.00 43.02 2.85
270 271 1.002430 GGGATGGATATGCGCAAGAGA 59.998 52.381 17.11 0.00 43.02 3.10
271 272 2.550855 GGGATGGATATGCGCAAGAGAA 60.551 50.000 17.11 0.02 43.02 2.87
272 273 3.341823 GGATGGATATGCGCAAGAGAAT 58.658 45.455 17.11 6.01 43.02 2.40
273 274 3.126514 GGATGGATATGCGCAAGAGAATG 59.873 47.826 17.11 0.00 43.02 2.67
274 275 2.497138 TGGATATGCGCAAGAGAATGG 58.503 47.619 17.11 0.00 43.02 3.16
275 276 2.104622 TGGATATGCGCAAGAGAATGGA 59.895 45.455 17.11 0.00 43.02 3.41
276 277 2.740981 GGATATGCGCAAGAGAATGGAG 59.259 50.000 17.11 0.00 43.02 3.86
277 278 3.555795 GGATATGCGCAAGAGAATGGAGA 60.556 47.826 17.11 0.00 43.02 3.71
278 279 1.950828 ATGCGCAAGAGAATGGAGAG 58.049 50.000 17.11 0.00 43.02 3.20
279 280 0.897621 TGCGCAAGAGAATGGAGAGA 59.102 50.000 8.16 0.00 43.02 3.10
280 281 1.134877 TGCGCAAGAGAATGGAGAGAG 60.135 52.381 8.16 0.00 43.02 3.20
281 282 1.135915 GCGCAAGAGAATGGAGAGAGA 59.864 52.381 0.30 0.00 43.02 3.10
282 283 2.808244 CGCAAGAGAATGGAGAGAGAC 58.192 52.381 0.00 0.00 43.02 3.36
283 284 2.794282 CGCAAGAGAATGGAGAGAGACG 60.794 54.545 0.00 0.00 43.02 4.18
284 285 2.425312 GCAAGAGAATGGAGAGAGACGA 59.575 50.000 0.00 0.00 0.00 4.20
285 286 3.489059 GCAAGAGAATGGAGAGAGACGAG 60.489 52.174 0.00 0.00 0.00 4.18
286 287 2.930950 AGAGAATGGAGAGAGACGAGG 58.069 52.381 0.00 0.00 0.00 4.63
287 288 2.507886 AGAGAATGGAGAGAGACGAGGA 59.492 50.000 0.00 0.00 0.00 3.71
288 289 2.878406 GAGAATGGAGAGAGACGAGGAG 59.122 54.545 0.00 0.00 0.00 3.69
289 290 1.953686 GAATGGAGAGAGACGAGGAGG 59.046 57.143 0.00 0.00 0.00 4.30
290 291 0.184933 ATGGAGAGAGACGAGGAGGG 59.815 60.000 0.00 0.00 0.00 4.30
291 292 1.152839 GGAGAGAGACGAGGAGGGG 60.153 68.421 0.00 0.00 0.00 4.79
292 293 1.610873 GAGAGAGACGAGGAGGGGT 59.389 63.158 0.00 0.00 0.00 4.95
293 294 0.838608 GAGAGAGACGAGGAGGGGTA 59.161 60.000 0.00 0.00 0.00 3.69
294 295 1.212441 GAGAGAGACGAGGAGGGGTAA 59.788 57.143 0.00 0.00 0.00 2.85
295 296 1.639628 AGAGAGACGAGGAGGGGTAAA 59.360 52.381 0.00 0.00 0.00 2.01
296 297 2.042706 AGAGAGACGAGGAGGGGTAAAA 59.957 50.000 0.00 0.00 0.00 1.52
297 298 2.427812 GAGAGACGAGGAGGGGTAAAAG 59.572 54.545 0.00 0.00 0.00 2.27
298 299 1.481363 GAGACGAGGAGGGGTAAAAGG 59.519 57.143 0.00 0.00 0.00 3.11
299 300 1.078324 AGACGAGGAGGGGTAAAAGGA 59.922 52.381 0.00 0.00 0.00 3.36
300 301 2.117051 GACGAGGAGGGGTAAAAGGAT 58.883 52.381 0.00 0.00 0.00 3.24
301 302 3.052338 AGACGAGGAGGGGTAAAAGGATA 60.052 47.826 0.00 0.00 0.00 2.59
302 303 3.708121 GACGAGGAGGGGTAAAAGGATAA 59.292 47.826 0.00 0.00 0.00 1.75
303 304 3.710165 ACGAGGAGGGGTAAAAGGATAAG 59.290 47.826 0.00 0.00 0.00 1.73
304 305 3.965347 CGAGGAGGGGTAAAAGGATAAGA 59.035 47.826 0.00 0.00 0.00 2.10
305 306 4.407945 CGAGGAGGGGTAAAAGGATAAGAA 59.592 45.833 0.00 0.00 0.00 2.52
306 307 5.453480 CGAGGAGGGGTAAAAGGATAAGAAG 60.453 48.000 0.00 0.00 0.00 2.85
307 308 4.727332 AGGAGGGGTAAAAGGATAAGAAGG 59.273 45.833 0.00 0.00 0.00 3.46
308 309 4.725304 GGAGGGGTAAAAGGATAAGAAGGA 59.275 45.833 0.00 0.00 0.00 3.36
309 310 5.193124 GGAGGGGTAAAAGGATAAGAAGGAA 59.807 44.000 0.00 0.00 0.00 3.36
310 311 6.328782 AGGGGTAAAAGGATAAGAAGGAAG 57.671 41.667 0.00 0.00 0.00 3.46
311 312 5.796399 AGGGGTAAAAGGATAAGAAGGAAGT 59.204 40.000 0.00 0.00 0.00 3.01
312 313 5.886474 GGGGTAAAAGGATAAGAAGGAAGTG 59.114 44.000 0.00 0.00 0.00 3.16
313 314 5.886474 GGGTAAAAGGATAAGAAGGAAGTGG 59.114 44.000 0.00 0.00 0.00 4.00
314 315 5.357314 GGTAAAAGGATAAGAAGGAAGTGGC 59.643 44.000 0.00 0.00 0.00 5.01
315 316 4.936685 AAAGGATAAGAAGGAAGTGGCT 57.063 40.909 0.00 0.00 0.00 4.75
316 317 3.922171 AGGATAAGAAGGAAGTGGCTG 57.078 47.619 0.00 0.00 0.00 4.85
317 318 2.507471 AGGATAAGAAGGAAGTGGCTGG 59.493 50.000 0.00 0.00 0.00 4.85
318 319 2.422093 GGATAAGAAGGAAGTGGCTGGG 60.422 54.545 0.00 0.00 0.00 4.45
319 320 2.038863 TAAGAAGGAAGTGGCTGGGA 57.961 50.000 0.00 0.00 0.00 4.37
320 321 1.149101 AAGAAGGAAGTGGCTGGGAA 58.851 50.000 0.00 0.00 0.00 3.97
321 322 0.402121 AGAAGGAAGTGGCTGGGAAC 59.598 55.000 0.00 0.00 0.00 3.62
322 323 0.955919 GAAGGAAGTGGCTGGGAACG 60.956 60.000 0.00 0.00 0.00 3.95
323 324 2.359975 GGAAGTGGCTGGGAACGG 60.360 66.667 0.00 0.00 40.79 4.44
324 325 2.359975 GAAGTGGCTGGGAACGGG 60.360 66.667 0.00 0.00 37.13 5.28
325 326 3.175710 AAGTGGCTGGGAACGGGT 61.176 61.111 0.00 0.00 37.13 5.28
326 327 3.491598 AAGTGGCTGGGAACGGGTG 62.492 63.158 0.00 0.00 37.13 4.61
334 335 4.980805 GGAACGGGTGCGTGCAGA 62.981 66.667 0.00 0.00 0.00 4.26
335 336 3.712881 GAACGGGTGCGTGCAGAC 61.713 66.667 0.00 0.00 0.00 3.51
341 342 4.626081 GTGCGTGCAGACCCCTGT 62.626 66.667 0.00 0.00 42.35 4.00
342 343 3.872603 TGCGTGCAGACCCCTGTT 61.873 61.111 0.00 0.00 42.35 3.16
343 344 2.345991 GCGTGCAGACCCCTGTTA 59.654 61.111 0.00 0.00 42.35 2.41
344 345 2.033194 GCGTGCAGACCCCTGTTAC 61.033 63.158 0.00 0.00 42.35 2.50
345 346 1.375523 CGTGCAGACCCCTGTTACC 60.376 63.158 0.00 0.00 42.35 2.85
346 347 1.375523 GTGCAGACCCCTGTTACCG 60.376 63.158 0.00 0.00 42.35 4.02
347 348 2.436115 GCAGACCCCTGTTACCGC 60.436 66.667 0.00 0.00 42.35 5.68
348 349 2.125673 CAGACCCCTGTTACCGCG 60.126 66.667 0.00 0.00 35.70 6.46
349 350 2.602568 AGACCCCTGTTACCGCGT 60.603 61.111 4.92 0.00 0.00 6.01
350 351 2.433664 GACCCCTGTTACCGCGTG 60.434 66.667 4.92 0.00 0.00 5.34
351 352 3.945304 GACCCCTGTTACCGCGTGG 62.945 68.421 14.93 14.93 42.84 4.94
353 354 4.690719 CCCTGTTACCGCGTGGCA 62.691 66.667 16.69 0.00 39.70 4.92
354 355 3.419759 CCTGTTACCGCGTGGCAC 61.420 66.667 16.69 12.99 39.70 5.01
355 356 2.663520 CTGTTACCGCGTGGCACA 60.664 61.111 16.69 17.06 39.70 4.57
356 357 2.031314 TGTTACCGCGTGGCACAT 59.969 55.556 16.69 0.00 44.52 3.21
357 358 0.738063 CTGTTACCGCGTGGCACATA 60.738 55.000 16.69 0.00 44.52 2.29
358 359 1.015085 TGTTACCGCGTGGCACATAC 61.015 55.000 16.69 6.76 44.52 2.39
359 360 1.806351 TTACCGCGTGGCACATACG 60.806 57.895 16.69 16.90 44.52 3.06
360 361 2.489539 TTACCGCGTGGCACATACGT 62.490 55.000 16.69 9.84 44.52 3.57
363 364 3.794270 GCGTGGCACATACGTGAT 58.206 55.556 19.09 0.00 46.80 3.06
364 365 1.636340 GCGTGGCACATACGTGATC 59.364 57.895 19.09 0.00 46.80 2.92
365 366 1.917212 CGTGGCACATACGTGATCG 59.083 57.895 19.09 0.00 46.80 3.69
366 367 1.636340 GTGGCACATACGTGATCGC 59.364 57.895 13.86 0.00 46.80 4.58
367 368 0.806102 GTGGCACATACGTGATCGCT 60.806 55.000 13.86 0.00 46.80 4.93
368 369 0.527600 TGGCACATACGTGATCGCTC 60.528 55.000 4.48 0.00 46.80 5.03
369 370 1.540607 GGCACATACGTGATCGCTCG 61.541 60.000 4.48 4.10 46.80 5.03
370 371 1.840061 CACATACGTGATCGCTCGC 59.160 57.895 4.48 0.00 46.80 5.03
386 387 3.351416 GCGACCGGCGGAAAAGTT 61.351 61.111 35.78 9.01 41.29 2.66
387 388 2.858158 CGACCGGCGGAAAAGTTC 59.142 61.111 35.78 17.62 36.03 3.01
388 389 2.858158 GACCGGCGGAAAAGTTCG 59.142 61.111 35.78 2.05 0.00 3.95
389 390 1.665599 GACCGGCGGAAAAGTTCGA 60.666 57.895 35.78 0.00 0.00 3.71
390 391 1.894223 GACCGGCGGAAAAGTTCGAC 61.894 60.000 35.78 6.34 0.00 4.20
391 392 2.674084 CCGGCGGAAAAGTTCGACC 61.674 63.158 24.41 0.00 0.00 4.79
392 393 2.858158 GGCGGAAAAGTTCGACCG 59.142 61.111 5.59 5.59 46.74 4.79
393 394 2.674084 GGCGGAAAAGTTCGACCGG 61.674 63.158 11.29 0.00 44.61 5.28
394 395 2.858158 CGGAAAAGTTCGACCGGC 59.142 61.111 0.00 0.00 41.41 6.13
395 396 2.858158 GGAAAAGTTCGACCGGCG 59.142 61.111 0.00 6.66 42.69 6.46
396 397 2.172659 GAAAAGTTCGACCGGCGC 59.827 61.111 0.00 0.00 40.61 6.53
397 398 2.589442 AAAAGTTCGACCGGCGCA 60.589 55.556 10.83 0.00 40.61 6.09
398 399 2.759519 GAAAAGTTCGACCGGCGCAC 62.760 60.000 10.83 7.20 40.61 5.34
409 410 4.379143 GGCGCACCGGTTCGAAAC 62.379 66.667 30.65 15.01 0.00 2.78
410 411 4.712873 GCGCACCGGTTCGAAACG 62.713 66.667 30.65 28.11 0.00 3.60
411 412 3.332409 CGCACCGGTTCGAAACGT 61.332 61.111 31.49 18.14 0.00 3.99
412 413 2.873604 CGCACCGGTTCGAAACGTT 61.874 57.895 31.49 18.00 0.00 3.99
413 414 1.352753 GCACCGGTTCGAAACGTTT 59.647 52.632 31.49 14.57 0.00 3.60
414 415 0.655337 GCACCGGTTCGAAACGTTTC 60.655 55.000 31.49 27.37 0.00 2.78
415 416 0.041926 CACCGGTTCGAAACGTTTCC 60.042 55.000 31.49 18.43 33.68 3.13
416 417 1.159713 ACCGGTTCGAAACGTTTCCC 61.160 55.000 31.49 24.18 33.68 3.97
417 418 0.881600 CCGGTTCGAAACGTTTCCCT 60.882 55.000 31.49 2.37 33.68 4.20
418 419 1.605202 CCGGTTCGAAACGTTTCCCTA 60.605 52.381 31.49 16.14 33.68 3.53
419 420 2.134346 CGGTTCGAAACGTTTCCCTAA 58.866 47.619 29.95 20.24 33.68 2.69
480 481 6.910536 ACTATCGGTGAAATTGACTCAATC 57.089 37.500 4.70 0.00 32.43 2.67
481 482 6.644347 ACTATCGGTGAAATTGACTCAATCT 58.356 36.000 4.70 0.00 32.43 2.40
486 487 5.050769 CGGTGAAATTGACTCAATCTATCGG 60.051 44.000 4.70 0.00 32.43 4.18
490 491 3.710326 TTGACTCAATCTATCGGTCGG 57.290 47.619 0.00 0.00 0.00 4.79
605 608 1.004560 CTCCGCTCACCTCTGCAAA 60.005 57.895 0.00 0.00 0.00 3.68
1008 1033 3.318017 CCTCGGCTCGTTTGGATATAAG 58.682 50.000 0.00 0.00 0.00 1.73
1009 1034 3.243771 CCTCGGCTCGTTTGGATATAAGT 60.244 47.826 0.00 0.00 0.00 2.24
1010 1035 3.713288 TCGGCTCGTTTGGATATAAGTG 58.287 45.455 0.00 0.00 0.00 3.16
1096 1143 3.567478 AGCAACTCTTCTCCAACAAGT 57.433 42.857 0.00 0.00 0.00 3.16
1159 1209 2.483877 CAGGATAACGAGCTTTGCACAA 59.516 45.455 0.00 0.00 0.00 3.33
1448 1498 2.415843 GCTCCGCGTATACCAGCA 59.584 61.111 4.92 0.00 0.00 4.41
1928 1978 1.991813 TGGTTCTCATCCATGGTCCAA 59.008 47.619 12.58 0.00 0.00 3.53
2066 2116 3.191162 CGGAAGAATGGATGCTTTTGACA 59.809 43.478 0.00 0.00 0.00 3.58
2208 2258 4.036518 AGGAAGGCTGAACTCATAGATGT 58.963 43.478 0.00 0.00 0.00 3.06
2346 2399 5.337330 GGCGTAACCAGTCTATATGCCTTAT 60.337 44.000 12.34 0.00 44.62 1.73
2464 2517 5.006386 GGTGTTCTCAACCTTGAAGATGAT 58.994 41.667 0.00 0.00 36.64 2.45
2765 2821 5.103290 TCTACAACAATTCCGTTTTCTGC 57.897 39.130 0.00 0.00 0.00 4.26
3218 3274 2.095059 AGTACAAGCCACGTAGTAACCG 60.095 50.000 0.00 0.00 41.61 4.44
3241 3297 6.223852 CGTCCAGTAGCATGGTCTATTATTT 58.776 40.000 0.00 0.00 41.43 1.40
3607 3664 2.309528 TGTCGGCATACTCATGGAAC 57.690 50.000 0.00 0.00 32.36 3.62
3638 3695 3.868757 TCCTTATGAGGTGAAGACGTG 57.131 47.619 3.04 0.00 43.97 4.49
3639 3696 3.162666 TCCTTATGAGGTGAAGACGTGT 58.837 45.455 3.04 0.00 43.97 4.49
3640 3697 3.576982 TCCTTATGAGGTGAAGACGTGTT 59.423 43.478 0.00 0.00 43.97 3.32
3641 3698 4.768448 TCCTTATGAGGTGAAGACGTGTTA 59.232 41.667 3.04 0.00 43.97 2.41
3642 3699 5.103000 CCTTATGAGGTGAAGACGTGTTAG 58.897 45.833 0.00 0.00 38.32 2.34
3643 3700 2.433868 TGAGGTGAAGACGTGTTAGC 57.566 50.000 0.00 0.00 0.00 3.09
3644 3701 1.000506 TGAGGTGAAGACGTGTTAGCC 59.999 52.381 0.00 3.79 0.00 3.93
3645 3702 0.038526 AGGTGAAGACGTGTTAGCCG 60.039 55.000 0.00 0.00 0.00 5.52
3646 3703 0.319297 GGTGAAGACGTGTTAGCCGT 60.319 55.000 0.00 0.00 42.06 5.68
3647 3704 1.068333 GGTGAAGACGTGTTAGCCGTA 60.068 52.381 0.00 0.00 38.92 4.02
3648 3705 1.981533 GTGAAGACGTGTTAGCCGTAC 59.018 52.381 0.00 0.00 38.92 3.67
3649 3706 1.608109 TGAAGACGTGTTAGCCGTACA 59.392 47.619 0.00 0.00 38.92 2.90
3650 3707 2.248487 GAAGACGTGTTAGCCGTACAG 58.752 52.381 0.00 0.00 38.92 2.74
3651 3708 0.109412 AGACGTGTTAGCCGTACAGC 60.109 55.000 0.00 0.00 38.92 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.605319 TGGACGGGATGAGTTGCAAC 60.605 55.000 22.17 22.17 0.00 4.17
3 4 1.745489 GGTGGACGGGATGAGTTGC 60.745 63.158 0.00 0.00 0.00 4.17
4 5 0.391661 CTGGTGGACGGGATGAGTTG 60.392 60.000 0.00 0.00 0.00 3.16
13 14 2.227089 GAGCTACACCTGGTGGACGG 62.227 65.000 29.05 12.50 37.94 4.79
14 15 1.215647 GAGCTACACCTGGTGGACG 59.784 63.158 29.05 17.50 37.94 4.79
15 16 1.192146 TGGAGCTACACCTGGTGGAC 61.192 60.000 29.05 17.78 37.94 4.02
16 17 1.157513 TGGAGCTACACCTGGTGGA 59.842 57.895 29.05 21.47 37.94 4.02
17 18 1.296715 GTGGAGCTACACCTGGTGG 59.703 63.158 29.05 14.44 37.94 4.61
24 25 1.515736 GTACGCGGTGGAGCTACAC 60.516 63.158 21.65 21.65 40.60 2.90
25 26 1.246056 AAGTACGCGGTGGAGCTACA 61.246 55.000 12.47 0.00 34.40 2.74
26 27 0.525029 GAAGTACGCGGTGGAGCTAC 60.525 60.000 12.47 1.33 34.40 3.58
27 28 1.660560 GGAAGTACGCGGTGGAGCTA 61.661 60.000 12.47 0.00 34.40 3.32
28 29 2.572284 GAAGTACGCGGTGGAGCT 59.428 61.111 12.47 0.00 34.40 4.09
29 30 2.508663 GGAAGTACGCGGTGGAGC 60.509 66.667 12.47 0.00 0.00 4.70
30 31 1.139095 GAGGAAGTACGCGGTGGAG 59.861 63.158 12.47 0.00 0.00 3.86
31 32 2.345760 GGAGGAAGTACGCGGTGGA 61.346 63.158 12.47 0.00 0.00 4.02
32 33 2.183555 GGAGGAAGTACGCGGTGG 59.816 66.667 12.47 0.00 0.00 4.61
33 34 1.139095 GAGGAGGAAGTACGCGGTG 59.861 63.158 12.47 0.00 0.00 4.94
34 35 2.050934 GGAGGAGGAAGTACGCGGT 61.051 63.158 12.47 0.00 0.00 5.68
35 36 2.806237 GGAGGAGGAAGTACGCGG 59.194 66.667 12.47 0.00 0.00 6.46
36 37 2.320339 GACGGAGGAGGAAGTACGCG 62.320 65.000 3.53 3.53 0.00 6.01
37 38 1.432657 GACGGAGGAGGAAGTACGC 59.567 63.158 0.00 0.00 0.00 4.42
38 39 0.679002 TGGACGGAGGAGGAAGTACG 60.679 60.000 0.00 0.00 0.00 3.67
39 40 0.816373 GTGGACGGAGGAGGAAGTAC 59.184 60.000 0.00 0.00 0.00 2.73
40 41 0.324091 GGTGGACGGAGGAGGAAGTA 60.324 60.000 0.00 0.00 0.00 2.24
41 42 1.609794 GGTGGACGGAGGAGGAAGT 60.610 63.158 0.00 0.00 0.00 3.01
42 43 2.711922 CGGTGGACGGAGGAGGAAG 61.712 68.421 0.00 0.00 39.42 3.46
43 44 2.678934 CGGTGGACGGAGGAGGAA 60.679 66.667 0.00 0.00 39.42 3.36
64 65 2.646175 CGTCTGATGGACCACGGGT 61.646 63.158 0.00 0.00 41.64 5.28
65 66 2.184322 CGTCTGATGGACCACGGG 59.816 66.667 0.00 0.00 41.64 5.28
66 67 2.184322 CCGTCTGATGGACCACGG 59.816 66.667 10.50 6.12 45.38 4.94
67 68 2.184322 CCCGTCTGATGGACCACG 59.816 66.667 17.52 0.00 41.64 4.94
68 69 2.584608 CCCCGTCTGATGGACCAC 59.415 66.667 17.52 0.00 41.64 4.16
69 70 2.687200 CCCCCGTCTGATGGACCA 60.687 66.667 17.52 0.00 41.64 4.02
70 71 4.176752 GCCCCCGTCTGATGGACC 62.177 72.222 17.52 1.54 41.64 4.46
71 72 4.530857 CGCCCCCGTCTGATGGAC 62.531 72.222 17.52 5.61 41.28 4.02
85 86 3.757248 ATTCATGCTCCCCGACGCC 62.757 63.158 0.00 0.00 0.00 5.68
86 87 2.203070 ATTCATGCTCCCCGACGC 60.203 61.111 0.00 0.00 0.00 5.19
87 88 1.889105 CCATTCATGCTCCCCGACG 60.889 63.158 0.00 0.00 0.00 5.12
88 89 1.526917 CCCATTCATGCTCCCCGAC 60.527 63.158 0.00 0.00 0.00 4.79
89 90 1.692395 TCCCATTCATGCTCCCCGA 60.692 57.895 0.00 0.00 0.00 5.14
90 91 1.228063 CTCCCATTCATGCTCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
91 92 1.152368 CCTCCCATTCATGCTCCCC 59.848 63.158 0.00 0.00 0.00 4.81
92 93 1.530183 GCCTCCCATTCATGCTCCC 60.530 63.158 0.00 0.00 0.00 4.30
93 94 1.530183 GGCCTCCCATTCATGCTCC 60.530 63.158 0.00 0.00 0.00 4.70
94 95 1.530183 GGGCCTCCCATTCATGCTC 60.530 63.158 0.84 0.00 44.65 4.26
95 96 2.605299 GGGCCTCCCATTCATGCT 59.395 61.111 0.84 0.00 44.65 3.79
96 97 2.908940 CGGGCCTCCCATTCATGC 60.909 66.667 0.84 0.00 45.83 4.06
97 98 1.526917 GTCGGGCCTCCCATTCATG 60.527 63.158 0.84 0.00 45.83 3.07
98 99 2.919043 GTCGGGCCTCCCATTCAT 59.081 61.111 0.84 0.00 45.83 2.57
99 100 3.781307 CGTCGGGCCTCCCATTCA 61.781 66.667 0.84 0.00 45.83 2.57
100 101 3.447025 CTCGTCGGGCCTCCCATTC 62.447 68.421 0.84 0.00 45.83 2.67
101 102 3.470888 CTCGTCGGGCCTCCCATT 61.471 66.667 0.84 0.00 45.83 3.16
106 107 1.664321 TTTAGAGCTCGTCGGGCCTC 61.664 60.000 14.86 10.78 0.00 4.70
107 108 1.668101 CTTTAGAGCTCGTCGGGCCT 61.668 60.000 14.86 13.09 0.00 5.19
108 109 1.227002 CTTTAGAGCTCGTCGGGCC 60.227 63.158 14.86 5.40 0.00 5.80
109 110 0.386113 ATCTTTAGAGCTCGTCGGGC 59.614 55.000 9.70 9.70 0.00 6.13
110 111 3.984508 TTATCTTTAGAGCTCGTCGGG 57.015 47.619 8.37 0.00 0.00 5.14
111 112 4.740695 CCTTTTATCTTTAGAGCTCGTCGG 59.259 45.833 8.37 0.81 0.00 4.79
112 113 5.579718 TCCTTTTATCTTTAGAGCTCGTCG 58.420 41.667 8.37 0.00 0.00 5.12
113 114 6.797454 TCTCCTTTTATCTTTAGAGCTCGTC 58.203 40.000 8.37 0.00 0.00 4.20
114 115 6.777213 TCTCCTTTTATCTTTAGAGCTCGT 57.223 37.500 8.37 0.00 0.00 4.18
115 116 8.480643 TTTTCTCCTTTTATCTTTAGAGCTCG 57.519 34.615 8.37 0.00 0.00 5.03
117 118 9.015367 GGTTTTTCTCCTTTTATCTTTAGAGCT 57.985 33.333 0.00 0.00 0.00 4.09
118 119 9.015367 AGGTTTTTCTCCTTTTATCTTTAGAGC 57.985 33.333 0.00 0.00 30.18 4.09
120 121 9.216117 CGAGGTTTTTCTCCTTTTATCTTTAGA 57.784 33.333 0.00 0.00 35.20 2.10
121 122 9.000486 ACGAGGTTTTTCTCCTTTTATCTTTAG 58.000 33.333 0.00 0.00 35.20 1.85
122 123 8.913487 ACGAGGTTTTTCTCCTTTTATCTTTA 57.087 30.769 0.00 0.00 35.20 1.85
123 124 7.307811 CGACGAGGTTTTTCTCCTTTTATCTTT 60.308 37.037 0.00 0.00 35.20 2.52
124 125 6.147328 CGACGAGGTTTTTCTCCTTTTATCTT 59.853 38.462 0.00 0.00 35.20 2.40
125 126 5.638234 CGACGAGGTTTTTCTCCTTTTATCT 59.362 40.000 0.00 0.00 35.20 1.98
126 127 5.163884 CCGACGAGGTTTTTCTCCTTTTATC 60.164 44.000 0.00 0.00 35.20 1.75
127 128 4.694037 CCGACGAGGTTTTTCTCCTTTTAT 59.306 41.667 0.00 0.00 35.20 1.40
128 129 4.060205 CCGACGAGGTTTTTCTCCTTTTA 58.940 43.478 0.00 0.00 35.20 1.52
129 130 2.876550 CCGACGAGGTTTTTCTCCTTTT 59.123 45.455 0.00 0.00 35.20 2.27
130 131 2.103601 TCCGACGAGGTTTTTCTCCTTT 59.896 45.455 0.00 0.00 41.99 3.11
131 132 1.690352 TCCGACGAGGTTTTTCTCCTT 59.310 47.619 0.00 0.00 41.99 3.36
132 133 1.335145 TCCGACGAGGTTTTTCTCCT 58.665 50.000 0.00 0.00 41.99 3.69
133 134 2.159327 TTCCGACGAGGTTTTTCTCC 57.841 50.000 0.00 0.00 41.99 3.71
134 135 3.387397 TCTTTCCGACGAGGTTTTTCTC 58.613 45.455 0.00 0.00 41.99 2.87
135 136 3.391049 CTCTTTCCGACGAGGTTTTTCT 58.609 45.455 0.00 0.00 41.99 2.52
136 137 2.479275 CCTCTTTCCGACGAGGTTTTTC 59.521 50.000 0.00 0.00 41.49 2.29
137 138 2.490991 CCTCTTTCCGACGAGGTTTTT 58.509 47.619 0.00 0.00 41.49 1.94
138 139 2.165319 CCTCTTTCCGACGAGGTTTT 57.835 50.000 0.00 0.00 41.49 2.43
139 140 3.908737 CCTCTTTCCGACGAGGTTT 57.091 52.632 0.00 0.00 41.49 3.27
143 144 1.540267 TCTTCACCTCTTTCCGACGAG 59.460 52.381 0.00 0.00 0.00 4.18
144 145 1.540267 CTCTTCACCTCTTTCCGACGA 59.460 52.381 0.00 0.00 0.00 4.20
145 146 1.540267 TCTCTTCACCTCTTTCCGACG 59.460 52.381 0.00 0.00 0.00 5.12
146 147 2.094442 CCTCTCTTCACCTCTTTCCGAC 60.094 54.545 0.00 0.00 0.00 4.79
147 148 2.171840 CCTCTCTTCACCTCTTTCCGA 58.828 52.381 0.00 0.00 0.00 4.55
148 149 1.404851 GCCTCTCTTCACCTCTTTCCG 60.405 57.143 0.00 0.00 0.00 4.30
149 150 1.625818 TGCCTCTCTTCACCTCTTTCC 59.374 52.381 0.00 0.00 0.00 3.13
150 151 2.354604 CCTGCCTCTCTTCACCTCTTTC 60.355 54.545 0.00 0.00 0.00 2.62
151 152 1.627834 CCTGCCTCTCTTCACCTCTTT 59.372 52.381 0.00 0.00 0.00 2.52
152 153 1.274712 CCTGCCTCTCTTCACCTCTT 58.725 55.000 0.00 0.00 0.00 2.85
153 154 0.617249 CCCTGCCTCTCTTCACCTCT 60.617 60.000 0.00 0.00 0.00 3.69
154 155 1.621672 CCCCTGCCTCTCTTCACCTC 61.622 65.000 0.00 0.00 0.00 3.85
155 156 1.614824 CCCCTGCCTCTCTTCACCT 60.615 63.158 0.00 0.00 0.00 4.00
156 157 0.985490 ATCCCCTGCCTCTCTTCACC 60.985 60.000 0.00 0.00 0.00 4.02
157 158 0.179936 CATCCCCTGCCTCTCTTCAC 59.820 60.000 0.00 0.00 0.00 3.18
158 159 1.630126 GCATCCCCTGCCTCTCTTCA 61.630 60.000 0.00 0.00 45.66 3.02
159 160 1.148048 GCATCCCCTGCCTCTCTTC 59.852 63.158 0.00 0.00 45.66 2.87
160 161 3.329093 GCATCCCCTGCCTCTCTT 58.671 61.111 0.00 0.00 45.66 2.85
167 168 4.899239 CGACGAGGCATCCCCTGC 62.899 72.222 0.00 0.00 46.60 4.85
168 169 4.227134 CCGACGAGGCATCCCCTG 62.227 72.222 0.00 0.00 46.60 4.45
170 171 4.530857 CACCGACGAGGCATCCCC 62.531 72.222 0.00 0.00 46.52 4.81
171 172 4.530857 CCACCGACGAGGCATCCC 62.531 72.222 0.00 0.00 46.52 3.85
172 173 3.771160 ACCACCGACGAGGCATCC 61.771 66.667 0.00 0.00 46.52 3.51
173 174 2.509336 CACCACCGACGAGGCATC 60.509 66.667 0.00 0.00 46.52 3.91
174 175 4.082523 CCACCACCGACGAGGCAT 62.083 66.667 0.00 0.00 46.52 4.40
178 179 4.778415 CGAGCCACCACCGACGAG 62.778 72.222 0.00 0.00 0.00 4.18
187 188 3.894547 TTTTCTCCGGCGAGCCACC 62.895 63.158 9.30 0.00 35.94 4.61
188 189 2.358247 TTTTCTCCGGCGAGCCAC 60.358 61.111 9.30 0.00 35.94 5.01
189 190 2.358247 GTTTTCTCCGGCGAGCCA 60.358 61.111 9.30 0.00 35.94 4.75
190 191 3.125573 GGTTTTCTCCGGCGAGCC 61.126 66.667 9.30 3.59 35.94 4.70
191 192 2.358247 TGGTTTTCTCCGGCGAGC 60.358 61.111 9.30 0.00 35.94 5.03
192 193 2.380410 CGTGGTTTTCTCCGGCGAG 61.380 63.158 9.30 4.01 37.48 5.03
193 194 2.356553 CGTGGTTTTCTCCGGCGA 60.357 61.111 9.30 0.00 33.01 5.54
194 195 3.419759 CCGTGGTTTTCTCCGGCG 61.420 66.667 0.00 0.00 33.20 6.46
196 197 2.281208 TGCCGTGGTTTTCTCCGG 60.281 61.111 0.00 0.00 43.22 5.14
197 198 1.597027 AGTGCCGTGGTTTTCTCCG 60.597 57.895 0.00 0.00 0.00 4.63
198 199 1.515521 CCAGTGCCGTGGTTTTCTCC 61.516 60.000 0.00 0.00 32.32 3.71
199 200 1.949257 CCAGTGCCGTGGTTTTCTC 59.051 57.895 0.00 0.00 32.32 2.87
200 201 2.193536 GCCAGTGCCGTGGTTTTCT 61.194 57.895 3.53 0.00 40.09 2.52
201 202 2.335011 GCCAGTGCCGTGGTTTTC 59.665 61.111 3.53 0.00 40.09 2.29
219 220 4.100084 TCCATGTGCCTGGCTCCG 62.100 66.667 21.03 9.96 36.16 4.63
220 221 2.124403 CTCCATGTGCCTGGCTCC 60.124 66.667 21.03 10.95 36.16 4.70
221 222 1.153208 CTCTCCATGTGCCTGGCTC 60.153 63.158 21.03 17.16 36.16 4.70
222 223 1.614525 TCTCTCCATGTGCCTGGCT 60.615 57.895 21.03 0.00 36.16 4.75
223 224 1.153208 CTCTCTCCATGTGCCTGGC 60.153 63.158 12.87 12.87 36.16 4.85
224 225 1.525923 CCTCTCTCCATGTGCCTGG 59.474 63.158 0.00 0.00 37.66 4.45
225 226 1.153208 GCCTCTCTCCATGTGCCTG 60.153 63.158 0.00 0.00 0.00 4.85
226 227 2.729479 CGCCTCTCTCCATGTGCCT 61.729 63.158 0.00 0.00 0.00 4.75
227 228 2.202987 CGCCTCTCTCCATGTGCC 60.203 66.667 0.00 0.00 0.00 5.01
228 229 1.227205 CTCGCCTCTCTCCATGTGC 60.227 63.158 0.00 0.00 0.00 4.57
229 230 0.179116 CACTCGCCTCTCTCCATGTG 60.179 60.000 0.00 0.00 0.00 3.21
230 231 1.326213 CCACTCGCCTCTCTCCATGT 61.326 60.000 0.00 0.00 0.00 3.21
231 232 1.440893 CCACTCGCCTCTCTCCATG 59.559 63.158 0.00 0.00 0.00 3.66
232 233 1.760086 CCCACTCGCCTCTCTCCAT 60.760 63.158 0.00 0.00 0.00 3.41
233 234 2.363018 CCCACTCGCCTCTCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
234 235 3.151022 CCCCACTCGCCTCTCTCC 61.151 72.222 0.00 0.00 0.00 3.71
235 236 2.937959 ATCCCCCACTCGCCTCTCTC 62.938 65.000 0.00 0.00 0.00 3.20
236 237 3.015332 ATCCCCCACTCGCCTCTCT 62.015 63.158 0.00 0.00 0.00 3.10
237 238 2.444895 ATCCCCCACTCGCCTCTC 60.445 66.667 0.00 0.00 0.00 3.20
238 239 2.765807 CATCCCCCACTCGCCTCT 60.766 66.667 0.00 0.00 0.00 3.69
239 240 3.866582 CCATCCCCCACTCGCCTC 61.867 72.222 0.00 0.00 0.00 4.70
240 241 2.326529 TATCCATCCCCCACTCGCCT 62.327 60.000 0.00 0.00 0.00 5.52
241 242 1.201429 ATATCCATCCCCCACTCGCC 61.201 60.000 0.00 0.00 0.00 5.54
242 243 0.036010 CATATCCATCCCCCACTCGC 60.036 60.000 0.00 0.00 0.00 5.03
243 244 0.036010 GCATATCCATCCCCCACTCG 60.036 60.000 0.00 0.00 0.00 4.18
244 245 0.036010 CGCATATCCATCCCCCACTC 60.036 60.000 0.00 0.00 0.00 3.51
245 246 2.069776 CGCATATCCATCCCCCACT 58.930 57.895 0.00 0.00 0.00 4.00
246 247 1.675641 GCGCATATCCATCCCCCAC 60.676 63.158 0.30 0.00 0.00 4.61
247 248 1.714011 TTGCGCATATCCATCCCCCA 61.714 55.000 12.75 0.00 0.00 4.96
248 249 0.962356 CTTGCGCATATCCATCCCCC 60.962 60.000 12.75 0.00 0.00 5.40
249 250 0.036732 TCTTGCGCATATCCATCCCC 59.963 55.000 12.75 0.00 0.00 4.81
250 251 1.002430 TCTCTTGCGCATATCCATCCC 59.998 52.381 12.75 0.00 0.00 3.85
251 252 2.462456 TCTCTTGCGCATATCCATCC 57.538 50.000 12.75 0.00 0.00 3.51
252 253 3.126514 CCATTCTCTTGCGCATATCCATC 59.873 47.826 12.75 0.00 0.00 3.51
253 254 3.079578 CCATTCTCTTGCGCATATCCAT 58.920 45.455 12.75 0.00 0.00 3.41
254 255 2.104622 TCCATTCTCTTGCGCATATCCA 59.895 45.455 12.75 0.00 0.00 3.41
255 256 2.740981 CTCCATTCTCTTGCGCATATCC 59.259 50.000 12.75 0.00 0.00 2.59
256 257 3.657634 TCTCCATTCTCTTGCGCATATC 58.342 45.455 12.75 0.00 0.00 1.63
257 258 3.323115 TCTCTCCATTCTCTTGCGCATAT 59.677 43.478 12.75 0.00 0.00 1.78
258 259 2.695147 TCTCTCCATTCTCTTGCGCATA 59.305 45.455 12.75 0.92 0.00 3.14
259 260 1.483827 TCTCTCCATTCTCTTGCGCAT 59.516 47.619 12.75 0.00 0.00 4.73
260 261 0.897621 TCTCTCCATTCTCTTGCGCA 59.102 50.000 5.66 5.66 0.00 6.09
261 262 1.135915 TCTCTCTCCATTCTCTTGCGC 59.864 52.381 0.00 0.00 0.00 6.09
262 263 2.794282 CGTCTCTCTCCATTCTCTTGCG 60.794 54.545 0.00 0.00 0.00 4.85
263 264 2.425312 TCGTCTCTCTCCATTCTCTTGC 59.575 50.000 0.00 0.00 0.00 4.01
264 265 3.066621 CCTCGTCTCTCTCCATTCTCTTG 59.933 52.174 0.00 0.00 0.00 3.02
265 266 3.053991 TCCTCGTCTCTCTCCATTCTCTT 60.054 47.826 0.00 0.00 0.00 2.85
266 267 2.507886 TCCTCGTCTCTCTCCATTCTCT 59.492 50.000 0.00 0.00 0.00 3.10
267 268 2.878406 CTCCTCGTCTCTCTCCATTCTC 59.122 54.545 0.00 0.00 0.00 2.87
268 269 2.422803 CCTCCTCGTCTCTCTCCATTCT 60.423 54.545 0.00 0.00 0.00 2.40
269 270 1.953686 CCTCCTCGTCTCTCTCCATTC 59.046 57.143 0.00 0.00 0.00 2.67
270 271 1.410932 CCCTCCTCGTCTCTCTCCATT 60.411 57.143 0.00 0.00 0.00 3.16
271 272 0.184933 CCCTCCTCGTCTCTCTCCAT 59.815 60.000 0.00 0.00 0.00 3.41
272 273 1.610327 CCCTCCTCGTCTCTCTCCA 59.390 63.158 0.00 0.00 0.00 3.86
273 274 1.152839 CCCCTCCTCGTCTCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
274 275 0.838608 TACCCCTCCTCGTCTCTCTC 59.161 60.000 0.00 0.00 0.00 3.20
275 276 1.296984 TTACCCCTCCTCGTCTCTCT 58.703 55.000 0.00 0.00 0.00 3.10
276 277 2.140839 TTTACCCCTCCTCGTCTCTC 57.859 55.000 0.00 0.00 0.00 3.20
277 278 2.458620 CTTTTACCCCTCCTCGTCTCT 58.541 52.381 0.00 0.00 0.00 3.10
278 279 1.481363 CCTTTTACCCCTCCTCGTCTC 59.519 57.143 0.00 0.00 0.00 3.36
279 280 1.078324 TCCTTTTACCCCTCCTCGTCT 59.922 52.381 0.00 0.00 0.00 4.18
280 281 1.565067 TCCTTTTACCCCTCCTCGTC 58.435 55.000 0.00 0.00 0.00 4.20
281 282 2.265526 ATCCTTTTACCCCTCCTCGT 57.734 50.000 0.00 0.00 0.00 4.18
282 283 3.965347 TCTTATCCTTTTACCCCTCCTCG 59.035 47.826 0.00 0.00 0.00 4.63
283 284 5.163184 CCTTCTTATCCTTTTACCCCTCCTC 60.163 48.000 0.00 0.00 0.00 3.71
284 285 4.727332 CCTTCTTATCCTTTTACCCCTCCT 59.273 45.833 0.00 0.00 0.00 3.69
285 286 4.725304 TCCTTCTTATCCTTTTACCCCTCC 59.275 45.833 0.00 0.00 0.00 4.30
286 287 5.970501 TCCTTCTTATCCTTTTACCCCTC 57.029 43.478 0.00 0.00 0.00 4.30
287 288 5.796399 ACTTCCTTCTTATCCTTTTACCCCT 59.204 40.000 0.00 0.00 0.00 4.79
288 289 5.886474 CACTTCCTTCTTATCCTTTTACCCC 59.114 44.000 0.00 0.00 0.00 4.95
289 290 5.886474 CCACTTCCTTCTTATCCTTTTACCC 59.114 44.000 0.00 0.00 0.00 3.69
290 291 5.357314 GCCACTTCCTTCTTATCCTTTTACC 59.643 44.000 0.00 0.00 0.00 2.85
291 292 6.094186 CAGCCACTTCCTTCTTATCCTTTTAC 59.906 42.308 0.00 0.00 0.00 2.01
292 293 6.180472 CAGCCACTTCCTTCTTATCCTTTTA 58.820 40.000 0.00 0.00 0.00 1.52
293 294 5.012893 CAGCCACTTCCTTCTTATCCTTTT 58.987 41.667 0.00 0.00 0.00 2.27
294 295 4.568592 CCAGCCACTTCCTTCTTATCCTTT 60.569 45.833 0.00 0.00 0.00 3.11
295 296 3.054065 CCAGCCACTTCCTTCTTATCCTT 60.054 47.826 0.00 0.00 0.00 3.36
296 297 2.507471 CCAGCCACTTCCTTCTTATCCT 59.493 50.000 0.00 0.00 0.00 3.24
297 298 2.422093 CCCAGCCACTTCCTTCTTATCC 60.422 54.545 0.00 0.00 0.00 2.59
298 299 2.505819 TCCCAGCCACTTCCTTCTTATC 59.494 50.000 0.00 0.00 0.00 1.75
299 300 2.562296 TCCCAGCCACTTCCTTCTTAT 58.438 47.619 0.00 0.00 0.00 1.73
300 301 2.038863 TCCCAGCCACTTCCTTCTTA 57.961 50.000 0.00 0.00 0.00 2.10
301 302 1.149101 TTCCCAGCCACTTCCTTCTT 58.851 50.000 0.00 0.00 0.00 2.52
302 303 0.402121 GTTCCCAGCCACTTCCTTCT 59.598 55.000 0.00 0.00 0.00 2.85
303 304 0.955919 CGTTCCCAGCCACTTCCTTC 60.956 60.000 0.00 0.00 0.00 3.46
304 305 1.073199 CGTTCCCAGCCACTTCCTT 59.927 57.895 0.00 0.00 0.00 3.36
305 306 2.750350 CGTTCCCAGCCACTTCCT 59.250 61.111 0.00 0.00 0.00 3.36
306 307 2.359975 CCGTTCCCAGCCACTTCC 60.360 66.667 0.00 0.00 0.00 3.46
307 308 2.359975 CCCGTTCCCAGCCACTTC 60.360 66.667 0.00 0.00 0.00 3.01
308 309 3.175710 ACCCGTTCCCAGCCACTT 61.176 61.111 0.00 0.00 0.00 3.16
309 310 3.953775 CACCCGTTCCCAGCCACT 61.954 66.667 0.00 0.00 0.00 4.00
324 325 2.725203 TAACAGGGGTCTGCACGCAC 62.725 60.000 0.00 0.00 44.59 5.34
325 326 2.512355 TAACAGGGGTCTGCACGCA 61.512 57.895 0.00 0.00 44.59 5.24
326 327 2.033194 GTAACAGGGGTCTGCACGC 61.033 63.158 0.00 0.00 44.59 5.34
327 328 1.375523 GGTAACAGGGGTCTGCACG 60.376 63.158 0.00 0.00 44.59 5.34
328 329 1.375523 CGGTAACAGGGGTCTGCAC 60.376 63.158 0.00 0.00 44.59 4.57
329 330 3.065306 CGGTAACAGGGGTCTGCA 58.935 61.111 0.00 0.00 44.59 4.41
330 331 2.436115 GCGGTAACAGGGGTCTGC 60.436 66.667 0.00 0.00 44.59 4.26
331 332 2.125673 CGCGGTAACAGGGGTCTG 60.126 66.667 0.00 0.00 46.10 3.51
332 333 2.602568 ACGCGGTAACAGGGGTCT 60.603 61.111 12.47 0.00 0.00 3.85
333 334 2.433664 CACGCGGTAACAGGGGTC 60.434 66.667 12.47 0.00 0.00 4.46
334 335 4.011517 CCACGCGGTAACAGGGGT 62.012 66.667 12.47 0.00 33.15 4.95
336 337 4.690719 TGCCACGCGGTAACAGGG 62.691 66.667 12.47 0.85 33.28 4.45
337 338 3.419759 GTGCCACGCGGTAACAGG 61.420 66.667 12.47 3.22 33.28 4.00
338 339 0.738063 TATGTGCCACGCGGTAACAG 60.738 55.000 12.47 0.00 35.34 3.16
339 340 1.015085 GTATGTGCCACGCGGTAACA 61.015 55.000 12.47 9.91 36.03 2.41
340 341 1.711500 GTATGTGCCACGCGGTAAC 59.289 57.895 12.47 3.61 33.28 2.50
341 342 1.806351 CGTATGTGCCACGCGGTAA 60.806 57.895 12.47 0.00 31.94 2.85
342 343 2.202636 CGTATGTGCCACGCGGTA 60.203 61.111 12.47 0.00 31.94 4.02
343 344 4.367023 ACGTATGTGCCACGCGGT 62.367 61.111 12.47 0.00 43.10 5.68
344 345 3.848830 CACGTATGTGCCACGCGG 61.849 66.667 12.47 0.00 43.10 6.46
345 346 2.077801 GATCACGTATGTGCCACGCG 62.078 60.000 10.38 3.53 46.01 6.01
346 347 1.636340 GATCACGTATGTGCCACGC 59.364 57.895 10.38 0.00 46.01 5.34
347 348 1.917212 CGATCACGTATGTGCCACG 59.083 57.895 10.38 11.08 46.01 4.94
348 349 0.806102 AGCGATCACGTATGTGCCAC 60.806 55.000 10.38 3.55 46.01 5.01
349 350 0.527600 GAGCGATCACGTATGTGCCA 60.528 55.000 10.38 0.00 46.01 4.92
350 351 1.540607 CGAGCGATCACGTATGTGCC 61.541 60.000 10.38 4.01 46.01 5.01
351 352 1.840061 CGAGCGATCACGTATGTGC 59.160 57.895 10.38 0.00 46.01 4.57
352 353 1.856013 CGCGAGCGATCACGTATGTG 61.856 60.000 12.58 8.90 44.09 3.21
353 354 1.654440 CGCGAGCGATCACGTATGT 60.654 57.895 12.58 0.00 42.83 2.29
354 355 1.368850 TCGCGAGCGATCACGTATG 60.369 57.895 16.64 0.00 44.01 2.39
355 356 3.019800 TCGCGAGCGATCACGTAT 58.980 55.556 16.64 0.00 44.01 3.06
369 370 3.304764 GAACTTTTCCGCCGGTCGC 62.305 63.158 1.63 0.00 36.73 5.19
370 371 2.858158 GAACTTTTCCGCCGGTCG 59.142 61.111 1.63 7.37 38.08 4.79
371 372 1.665599 TCGAACTTTTCCGCCGGTC 60.666 57.895 1.63 0.00 0.00 4.79
372 373 1.957695 GTCGAACTTTTCCGCCGGT 60.958 57.895 1.63 0.00 0.00 5.28
373 374 2.674084 GGTCGAACTTTTCCGCCGG 61.674 63.158 0.00 0.00 0.00 6.13
374 375 2.858158 GGTCGAACTTTTCCGCCG 59.142 61.111 0.00 0.00 0.00 6.46
375 376 2.674084 CCGGTCGAACTTTTCCGCC 61.674 63.158 0.00 0.00 41.38 6.13
376 377 2.858158 CCGGTCGAACTTTTCCGC 59.142 61.111 0.00 0.00 41.38 5.54
377 378 2.858158 GCCGGTCGAACTTTTCCG 59.142 61.111 1.90 0.14 42.22 4.30
378 379 2.858158 CGCCGGTCGAACTTTTCC 59.142 61.111 12.11 0.00 41.67 3.13
379 380 2.172659 GCGCCGGTCGAACTTTTC 59.827 61.111 20.06 0.00 41.67 2.29
380 381 2.589442 TGCGCCGGTCGAACTTTT 60.589 55.556 20.06 0.00 41.67 2.27
381 382 3.343421 GTGCGCCGGTCGAACTTT 61.343 61.111 20.06 0.00 43.44 2.66
392 393 4.379143 GTTTCGAACCGGTGCGCC 62.379 66.667 30.90 16.16 0.00 6.53
393 394 4.712873 CGTTTCGAACCGGTGCGC 62.713 66.667 30.90 15.50 0.00 6.09
394 395 2.364103 AAACGTTTCGAACCGGTGCG 62.364 55.000 29.92 29.92 0.00 5.34
395 396 0.655337 GAAACGTTTCGAACCGGTGC 60.655 55.000 24.02 7.83 0.00 5.01
396 397 0.041926 GGAAACGTTTCGAACCGGTG 60.042 55.000 29.23 0.00 38.06 4.94
397 398 1.159713 GGGAAACGTTTCGAACCGGT 61.160 55.000 29.23 10.32 38.06 5.28
398 399 0.881600 AGGGAAACGTTTCGAACCGG 60.882 55.000 29.23 0.00 38.06 5.28
399 400 1.782044 TAGGGAAACGTTTCGAACCG 58.218 50.000 29.23 13.89 38.06 4.44
400 401 4.754372 AATTAGGGAAACGTTTCGAACC 57.246 40.909 29.23 24.72 38.06 3.62
401 402 5.791974 GCTAAATTAGGGAAACGTTTCGAAC 59.208 40.000 29.23 22.35 38.06 3.95
402 403 5.469421 TGCTAAATTAGGGAAACGTTTCGAA 59.531 36.000 29.23 23.19 38.06 3.71
403 404 4.996122 TGCTAAATTAGGGAAACGTTTCGA 59.004 37.500 29.23 17.20 38.06 3.71
404 405 5.084055 GTGCTAAATTAGGGAAACGTTTCG 58.916 41.667 29.23 16.03 38.06 3.46
405 406 6.250344 AGTGCTAAATTAGGGAAACGTTTC 57.750 37.500 28.83 28.83 36.46 2.78
406 407 7.748691 TTAGTGCTAAATTAGGGAAACGTTT 57.251 32.000 14.57 14.57 0.00 3.60
407 408 7.748691 TTTAGTGCTAAATTAGGGAAACGTT 57.251 32.000 0.00 0.00 30.78 3.99
408 409 7.748691 TTTTAGTGCTAAATTAGGGAAACGT 57.251 32.000 1.88 0.00 35.27 3.99
409 410 8.455682 TCATTTTAGTGCTAAATTAGGGAAACG 58.544 33.333 1.88 0.00 35.27 3.60
437 438 8.447833 CGATAGTGTTAGAACTTGGCATAAAAA 58.552 33.333 0.00 0.00 0.00 1.94
439 440 6.537301 CCGATAGTGTTAGAACTTGGCATAAA 59.463 38.462 0.00 0.00 0.00 1.40
461 462 5.748630 CGATAGATTGAGTCAATTTCACCGA 59.251 40.000 19.19 3.63 33.90 4.69
462 463 5.050769 CCGATAGATTGAGTCAATTTCACCG 60.051 44.000 19.19 16.82 33.90 4.94
467 468 5.050490 CCGACCGATAGATTGAGTCAATTT 58.950 41.667 19.19 15.91 33.90 1.82
469 470 3.637229 ACCGACCGATAGATTGAGTCAAT 59.363 43.478 18.31 18.31 36.72 2.57
470 471 3.021695 ACCGACCGATAGATTGAGTCAA 58.978 45.455 8.27 8.27 39.76 3.18
471 472 2.617308 GACCGACCGATAGATTGAGTCA 59.383 50.000 0.00 0.00 39.76 3.41
472 473 2.349627 CGACCGACCGATAGATTGAGTC 60.350 54.545 0.00 0.00 39.76 3.36
473 474 1.602851 CGACCGACCGATAGATTGAGT 59.397 52.381 0.00 0.00 39.76 3.41
474 475 1.663445 GCGACCGACCGATAGATTGAG 60.663 57.143 0.72 0.00 39.76 3.02
475 476 0.309922 GCGACCGACCGATAGATTGA 59.690 55.000 0.72 0.00 39.76 2.57
476 477 0.997226 CGCGACCGACCGATAGATTG 60.997 60.000 0.00 0.00 36.29 2.67
477 478 1.281960 CGCGACCGACCGATAGATT 59.718 57.895 0.00 0.00 36.29 2.40
478 479 2.944429 CGCGACCGACCGATAGAT 59.056 61.111 0.00 0.00 36.29 1.98
479 480 3.945434 GCGCGACCGACCGATAGA 61.945 66.667 12.10 0.00 36.29 1.98
486 487 2.420466 AAAACTTTCGCGCGACCGAC 62.420 55.000 35.02 0.00 36.90 4.79
490 491 1.458746 TTTGAAAACTTTCGCGCGAC 58.541 45.000 35.02 19.71 40.01 5.19
518 519 7.253983 GCGAACGATTCCTTTTTCTTTTCTTTT 60.254 33.333 0.00 0.00 0.00 2.27
522 523 5.212934 AGCGAACGATTCCTTTTTCTTTTC 58.787 37.500 0.00 0.00 0.00 2.29
523 524 5.183014 AGCGAACGATTCCTTTTTCTTTT 57.817 34.783 0.00 0.00 0.00 2.27
1008 1033 4.767255 CACCGAGGGCTGGCTCAC 62.767 72.222 0.00 0.00 0.00 3.51
1010 1035 4.767255 CACACCGAGGGCTGGCTC 62.767 72.222 0.00 0.00 0.00 4.70
1096 1143 1.001181 GGAGCAATTGCAAAAGCAGGA 59.999 47.619 30.89 0.00 45.16 3.86
1159 1209 4.103013 AGGCAAAATTTTCAGGCCAAAT 57.897 36.364 24.67 0.00 46.96 2.32
1308 1358 3.381272 CACCACAGTTTCAGTTTCCATGT 59.619 43.478 0.00 0.00 0.00 3.21
1412 1462 2.289532 GCCAGGAGGAGCTGACAGT 61.290 63.158 3.99 0.00 36.89 3.55
1448 1498 1.749638 GCTCAAGCTGGCTGCAGAT 60.750 57.895 20.43 1.44 45.94 2.90
1768 1818 2.334838 GGATCGTAAAGTTGCTGTCGT 58.665 47.619 0.00 0.00 0.00 4.34
1928 1978 2.221169 TGCAAACGAAAGCTGACATCT 58.779 42.857 0.00 0.00 0.00 2.90
2066 2116 1.305802 TGGCGGTAGGACCAGTGAT 60.306 57.895 0.00 0.00 38.47 3.06
2464 2517 3.778629 GGGACACAATTTCCTCCCTACTA 59.221 47.826 4.42 0.00 39.59 1.82
2765 2821 7.912056 TGTGAATAGGAAAGAAATGTGAGAG 57.088 36.000 0.00 0.00 0.00 3.20
3218 3274 7.934120 AGAAAATAATAGACCATGCTACTGGAC 59.066 37.037 7.42 2.08 39.73 4.02
3454 3511 3.039011 AGAACCGTATCAAGTAGCCCAT 58.961 45.455 0.00 0.00 0.00 4.00
3607 3664 3.206150 CCTCATAAGGAAACCGTGATGG 58.794 50.000 0.00 0.00 46.67 3.51
3649 3706 0.460311 GTACATACCAGAGGCACGCT 59.540 55.000 0.00 0.00 40.82 5.07
3650 3707 0.529992 GGTACATACCAGAGGCACGC 60.530 60.000 3.05 0.00 45.73 5.34
3651 3708 3.661745 GGTACATACCAGAGGCACG 57.338 57.895 3.05 0.00 45.73 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.