Multiple sequence alignment - TraesCS4D01G115600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G115600 chr4D 100.000 4145 0 0 1 4145 96628887 96624743 0.000000e+00 7655.0
1 TraesCS4D01G115600 chr4D 100.000 2946 0 0 4531 7476 96624357 96621412 0.000000e+00 5441.0
2 TraesCS4D01G115600 chr4D 81.346 327 50 8 2260 2578 96607323 96607646 9.630000e-64 255.0
3 TraesCS4D01G115600 chr4D 78.442 385 64 15 4734 5114 96608991 96609360 4.510000e-57 233.0
4 TraesCS4D01G115600 chr4D 85.149 101 14 1 7256 7355 70350089 70350189 1.330000e-17 102.0
5 TraesCS4D01G115600 chr4B 94.099 3406 107 22 817 4145 136681016 136677628 0.000000e+00 5090.0
6 TraesCS4D01G115600 chr4B 96.441 843 14 4 4532 5367 136677604 136676771 0.000000e+00 1376.0
7 TraesCS4D01G115600 chr4B 89.157 830 52 20 1 800 136681804 136680983 0.000000e+00 1000.0
8 TraesCS4D01G115600 chr4B 95.660 553 20 2 5778 6330 136676408 136675860 0.000000e+00 885.0
9 TraesCS4D01G115600 chr4B 95.640 344 11 2 5366 5708 136676731 136676391 3.940000e-152 549.0
10 TraesCS4D01G115600 chr4B 96.238 319 12 0 6332 6650 136675740 136675422 2.390000e-144 523.0
11 TraesCS4D01G115600 chr4B 87.121 396 39 7 323 711 116486119 116485729 8.910000e-119 438.0
12 TraesCS4D01G115600 chr4B 80.967 331 47 10 2260 2578 136670877 136671203 1.610000e-61 248.0
13 TraesCS4D01G115600 chr4B 77.922 385 66 16 4734 5114 136672587 136672956 9.760000e-54 222.0
14 TraesCS4D01G115600 chr4A 96.086 1993 57 9 893 2876 481408918 481410898 0.000000e+00 3229.0
15 TraesCS4D01G115600 chr4A 92.459 1220 35 16 2957 4145 481411833 481413026 0.000000e+00 1690.0
16 TraesCS4D01G115600 chr4A 95.751 1012 36 5 5778 6787 481414326 481415332 0.000000e+00 1624.0
17 TraesCS4D01G115600 chr4A 97.746 843 12 2 4531 5366 481413049 481413891 0.000000e+00 1445.0
18 TraesCS4D01G115600 chr4A 89.970 658 43 13 102 743 481408023 481408673 0.000000e+00 828.0
19 TraesCS4D01G115600 chr4A 90.741 324 16 6 5390 5708 481414029 481414343 3.230000e-113 420.0
20 TraesCS4D01G115600 chr4A 80.702 399 43 10 6958 7355 481415752 481416117 5.710000e-71 279.0
21 TraesCS4D01G115600 chr4A 81.873 331 44 10 2260 2578 481419740 481419414 1.600000e-66 265.0
22 TraesCS4D01G115600 chr4A 93.220 177 12 0 6782 6958 481415519 481415695 2.070000e-65 261.0
23 TraesCS4D01G115600 chr4A 86.517 89 2 1 2875 2953 481410980 481411068 1.030000e-13 89.8
24 TraesCS4D01G115600 chr4A 95.122 41 2 0 5366 5406 481413932 481413972 1.740000e-06 65.8
25 TraesCS4D01G115600 chr4A 82.857 70 12 0 7033 7102 647318832 647318901 6.260000e-06 63.9
26 TraesCS4D01G115600 chr1B 87.342 395 41 8 322 711 395308991 395308601 1.910000e-120 444.0
27 TraesCS4D01G115600 chr2D 86.902 397 39 10 318 710 607809820 607810207 4.140000e-117 433.0
28 TraesCS4D01G115600 chr2D 86.260 393 50 4 322 711 593212704 593213095 2.490000e-114 424.0
29 TraesCS4D01G115600 chr2D 98.571 70 1 0 5708 5777 68920676 68920607 2.830000e-24 124.0
30 TraesCS4D01G115600 chr2D 97.183 71 2 0 5707 5777 20325649 20325579 3.660000e-23 121.0
31 TraesCS4D01G115600 chr7A 86.410 390 48 5 324 710 715766905 715767292 8.970000e-114 422.0
32 TraesCS4D01G115600 chr6D 86.329 395 41 12 322 711 426976262 426976648 1.160000e-112 418.0
33 TraesCS4D01G115600 chr3B 86.111 396 46 9 322 711 764496647 764496255 1.160000e-112 418.0
34 TraesCS4D01G115600 chr6A 80.348 402 55 14 6956 7355 515408732 515409111 4.420000e-72 283.0
35 TraesCS4D01G115600 chr6A 81.646 158 22 5 2147 2302 4247284 4247436 2.830000e-24 124.0
36 TraesCS4D01G115600 chr6A 81.646 158 22 4 2147 2302 4367615 4367767 2.830000e-24 124.0
37 TraesCS4D01G115600 chr5D 75.306 409 68 22 6956 7355 6477343 6477727 1.670000e-36 165.0
38 TraesCS4D01G115600 chr5D 83.537 164 22 3 2147 2310 332598081 332597923 1.680000e-31 148.0
39 TraesCS4D01G115600 chr5D 76.299 308 45 17 7053 7355 83673427 83673711 1.010000e-28 139.0
40 TraesCS4D01G115600 chr5D 97.260 73 1 1 5706 5777 457669366 457669294 1.020000e-23 122.0
41 TraesCS4D01G115600 chr5D 97.222 72 2 0 5706 5777 486226174 486226103 1.020000e-23 122.0
42 TraesCS4D01G115600 chr7D 83.974 156 22 1 2147 2302 139896370 139896522 6.040000e-31 147.0
43 TraesCS4D01G115600 chr7D 97.222 72 2 0 5706 5777 19211431 19211360 1.020000e-23 122.0
44 TraesCS4D01G115600 chr1D 76.299 308 45 17 7053 7355 249861647 249861363 1.010000e-28 139.0
45 TraesCS4D01G115600 chr1D 74.688 320 58 17 7041 7355 378705486 378705185 3.660000e-23 121.0
46 TraesCS4D01G115600 chr3D 75.649 308 47 16 7053 7355 28454444 28454160 2.190000e-25 128.0
47 TraesCS4D01G115600 chr6B 81.875 160 18 7 2147 2302 84824094 84824246 2.830000e-24 124.0
48 TraesCS4D01G115600 chr6B 95.946 74 3 0 5704 5777 22647668 22647595 3.660000e-23 121.0
49 TraesCS4D01G115600 chr5B 97.183 71 2 0 5707 5777 646377958 646377888 3.660000e-23 121.0
50 TraesCS4D01G115600 chr5B 84.694 98 13 2 7259 7355 246148274 246148178 6.170000e-16 97.1
51 TraesCS4D01G115600 chrUn 81.013 158 23 4 2147 2302 62335078 62334926 1.320000e-22 119.0
52 TraesCS4D01G115600 chrUn 81.013 158 23 4 2147 2302 62396097 62395945 1.320000e-22 119.0
53 TraesCS4D01G115600 chr5A 93.750 80 2 3 5700 5777 530074846 530074768 4.740000e-22 117.0
54 TraesCS4D01G115600 chr5A 89.888 89 5 3 5690 5777 340811656 340811741 2.210000e-20 111.0
55 TraesCS4D01G115600 chr3A 76.636 214 34 13 7142 7351 681385022 681384821 3.690000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G115600 chr4D 96621412 96628887 7475 True 6548.00 7655 100.000000 1 7476 2 chr4D.!!$R1 7475
1 TraesCS4D01G115600 chr4D 96607323 96609360 2037 False 244.00 255 79.894000 2260 5114 2 chr4D.!!$F2 2854
2 TraesCS4D01G115600 chr4B 136675422 136681804 6382 True 1570.50 5090 94.539167 1 6650 6 chr4B.!!$R2 6649
3 TraesCS4D01G115600 chr4B 136670877 136672956 2079 False 235.00 248 79.444500 2260 5114 2 chr4B.!!$F1 2854
4 TraesCS4D01G115600 chr4A 481408023 481416117 8094 False 993.16 3229 91.831400 102 7355 10 chr4A.!!$F2 7253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.101399 CCTCGTTCGTGGATCTCCTG 59.899 60.000 7.42 0.00 36.82 3.86 F
1405 1540 0.663568 CGTCGGTGAGTTCGCTTCTT 60.664 55.000 0.00 0.00 0.00 2.52 F
1724 1863 0.764890 TGCACCCTCTGTAGCTTTGT 59.235 50.000 0.00 0.00 0.00 2.83 F
2532 2683 1.885887 TGGTTGCTGCAGATGTTTACC 59.114 47.619 20.43 14.01 0.00 2.85 F
2906 3187 2.163818 TGTTCCTCGGTTTGCTACAG 57.836 50.000 0.00 0.00 0.00 2.74 F
3762 4929 3.571401 CAGGACTTGCCATTCTGAAACTT 59.429 43.478 0.00 0.00 40.02 2.66 F
5238 6525 1.891919 GACCACAACTCTTGCCGCA 60.892 57.895 0.00 0.00 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1888 1.067635 CCACAAAAGGCATTTCCCTCG 60.068 52.381 0.00 0.0 32.93 4.63 R
2318 2461 1.142748 CGTTGGGCCAGTTTTTGCA 59.857 52.632 6.23 0.0 0.00 4.08 R
3722 4889 2.034878 CTGCTACTACAGGGAGCATGA 58.965 52.381 2.87 0.0 44.79 3.07 R
3799 4966 6.930068 ATCAGTAAGGGTAAGTAACAGTGT 57.070 37.500 0.00 0.0 0.00 3.55 R
5060 6343 1.871039 CGACTGAACGAACCCATTTGT 59.129 47.619 0.00 0.0 33.49 2.83 R
5678 7125 2.025131 TGCCACATGAATGATTCCCTCA 60.025 45.455 0.00 0.0 38.53 3.86 R
7235 9051 0.100325 CACACGCACACACAAATGGT 59.900 50.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.958355 CCACCTCCTTCTCTCTGATCTC 59.042 54.545 0.00 0.00 0.00 2.75
37 38 4.217510 CTCCTTCTCTCTGATCTCCACAT 58.782 47.826 0.00 0.00 0.00 3.21
49 50 3.147553 TCTCCACATATCTCTCCCTCG 57.852 52.381 0.00 0.00 0.00 4.63
54 55 2.619177 CACATATCTCTCCCTCGTTCGT 59.381 50.000 0.00 0.00 0.00 3.85
55 56 2.619177 ACATATCTCTCCCTCGTTCGTG 59.381 50.000 0.00 0.00 0.00 4.35
64 65 0.101399 CCTCGTTCGTGGATCTCCTG 59.899 60.000 7.42 0.00 36.82 3.86
92 93 3.198409 TCATCGATGAGGTGGGATTTG 57.802 47.619 23.99 0.00 32.11 2.32
186 187 5.407502 TCACAGGTACTTTACATGATCACG 58.592 41.667 0.00 0.00 42.63 4.35
200 201 3.159070 CACGTCATGTGGCACTCG 58.841 61.111 19.83 18.40 45.21 4.18
296 297 2.104622 TGCCTGAGTGTTTGATCTCACA 59.895 45.455 14.77 6.32 36.04 3.58
370 377 0.913934 TGCTCCCCATGCTCCAACTA 60.914 55.000 0.00 0.00 0.00 2.24
544 554 7.414814 AAAAGACAAAAACAACATTTGACGT 57.585 28.000 6.05 0.00 39.56 4.34
554 564 9.737427 AAAACAACATTTGACGTTATTCACATA 57.263 25.926 0.00 0.00 0.00 2.29
555 565 9.737427 AAACAACATTTGACGTTATTCACATAA 57.263 25.926 0.00 0.00 0.00 1.90
596 606 7.744276 TGTTTCTCGATGTACATTTCGATTTTG 59.256 33.333 18.94 9.77 42.84 2.44
702 713 8.647143 ATTAATGTTTTAAAATCGGAGCATGG 57.353 30.769 3.52 0.00 31.33 3.66
710 730 2.615227 ATCGGAGCATGGGAAGCACC 62.615 60.000 0.00 0.00 39.05 5.01
726 746 1.331756 GCACCGAGCACCTGAATATTG 59.668 52.381 0.00 0.00 44.79 1.90
736 756 1.430464 CCTGAATATTGCCCCCTCCAT 59.570 52.381 0.00 0.00 0.00 3.41
743 763 1.140312 TTGCCCCCTCCATCACTATC 58.860 55.000 0.00 0.00 0.00 2.08
746 766 1.424638 CCCCCTCCATCACTATCGTT 58.575 55.000 0.00 0.00 0.00 3.85
748 768 2.172717 CCCCCTCCATCACTATCGTTTT 59.827 50.000 0.00 0.00 0.00 2.43
777 810 4.950205 TTGAGAATTACCCCTATCGACC 57.050 45.455 0.00 0.00 0.00 4.79
912 1027 4.500375 GGGCTATCATGGTCAGCATTTTTC 60.500 45.833 13.63 0.00 37.02 2.29
1039 1174 1.303398 ACGCTCTCTTCGTCTCCCA 60.303 57.895 0.00 0.00 34.84 4.37
1405 1540 0.663568 CGTCGGTGAGTTCGCTTCTT 60.664 55.000 0.00 0.00 0.00 2.52
1406 1541 1.499049 GTCGGTGAGTTCGCTTCTTT 58.501 50.000 0.00 0.00 0.00 2.52
1469 1604 5.068329 TGTGTGGATTTTGTTGCTGTCATAA 59.932 36.000 0.00 0.00 0.00 1.90
1504 1639 2.287644 TGCAATGTGTTGAACAGAGTCG 59.712 45.455 0.00 0.00 43.64 4.18
1507 1642 2.238942 TGTGTTGAACAGAGTCGCAT 57.761 45.000 0.00 0.00 33.78 4.73
1514 1649 3.466836 TGAACAGAGTCGCATTCAGTTT 58.533 40.909 3.50 0.00 0.00 2.66
1542 1677 6.009589 TCCCAAAAATATGTGTGATGTGTCT 58.990 36.000 0.00 0.00 0.00 3.41
1546 1681 9.859427 CCAAAAATATGTGTGATGTGTCTAATT 57.141 29.630 0.00 0.00 0.00 1.40
1556 1691 7.545615 GTGTGATGTGTCTAATTGTGTATCAGA 59.454 37.037 0.00 0.00 0.00 3.27
1612 1747 8.712228 TCTAGATTGGCTATCTATGAAGTGAA 57.288 34.615 17.01 0.00 43.27 3.18
1655 1793 2.631160 TGTGTGGATCGTTTTGTCCT 57.369 45.000 0.00 0.00 35.49 3.85
1658 1796 3.810941 TGTGTGGATCGTTTTGTCCTAAC 59.189 43.478 0.00 0.00 35.49 2.34
1673 1812 4.051922 GTCCTAACGATCCAATGCAGTAG 58.948 47.826 0.00 0.00 0.00 2.57
1724 1863 0.764890 TGCACCCTCTGTAGCTTTGT 59.235 50.000 0.00 0.00 0.00 2.83
1807 1946 4.191544 CAAAGGAGAATATCGCTGAACCA 58.808 43.478 0.00 0.00 0.00 3.67
1895 2034 7.041712 GGCTTTCTTGTGGAGCTATATTTCTAC 60.042 40.741 0.00 0.00 36.66 2.59
1971 2113 6.035112 CAGTAGCAAGAAGTTTTATCGAGTCC 59.965 42.308 0.00 0.00 0.00 3.85
1987 2129 2.737252 GAGTCCGTTACTGAAAAGGCTG 59.263 50.000 0.00 0.00 39.07 4.85
2167 2310 6.267471 TGCAAGTGACCTTAATTGAGGAATTT 59.733 34.615 22.31 10.11 39.25 1.82
2205 2348 2.867109 ACTGAATGTGGTCTTCCCAG 57.133 50.000 0.00 0.00 46.45 4.45
2217 2360 6.127168 TGTGGTCTTCCCAGTGTAATACTATG 60.127 42.308 0.00 0.00 46.45 2.23
2318 2461 7.331791 GTGGAGAGGTGTCAGATTTAGTATTT 58.668 38.462 0.00 0.00 0.00 1.40
2532 2683 1.885887 TGGTTGCTGCAGATGTTTACC 59.114 47.619 20.43 14.01 0.00 2.85
2580 2731 6.938030 CACTATTCTGGGTAAAAAGGTACACA 59.062 38.462 0.00 0.00 34.99 3.72
2583 2734 9.326413 CTATTCTGGGTAAAAAGGTACACATAG 57.674 37.037 0.00 0.00 36.80 2.23
2615 2767 4.451096 TCTTTTCACTGCCGTATTGAGTTC 59.549 41.667 0.00 0.00 0.00 3.01
2637 2789 7.797123 AGTTCGAAACGTTTTCTTGCTAATAAG 59.203 33.333 15.89 0.00 36.23 1.73
2664 2816 4.271291 GGCTACCTTCGATTCAAATGACTC 59.729 45.833 0.00 0.00 0.00 3.36
2689 2841 8.329502 TCTAGAGCTACCAGTAATGCATATCTA 58.670 37.037 0.00 0.00 0.00 1.98
2906 3187 2.163818 TGTTCCTCGGTTTGCTACAG 57.836 50.000 0.00 0.00 0.00 2.74
2939 3230 5.830000 AAAACAGTCCTGTACCAGTTTTC 57.170 39.130 0.00 0.00 44.13 2.29
2958 4010 6.321181 AGTTTTCACCAGCTGACTTAATTTCA 59.679 34.615 17.39 0.00 0.00 2.69
2968 4020 9.317936 CAGCTGACTTAATTTCATACACAGATA 57.682 33.333 8.42 0.00 0.00 1.98
3078 4130 8.190784 AGTCTGTAAAAGGTCAAAATCTGTTTG 58.809 33.333 0.00 0.00 0.00 2.93
3131 4183 7.531716 TGTTTGTTTTAAACTCAGTGTAGTGG 58.468 34.615 9.33 0.00 0.00 4.00
3138 4190 4.755266 AACTCAGTGTAGTGGTTCAACT 57.245 40.909 0.00 0.00 0.00 3.16
3485 4541 6.096987 TGTTCTATGAGTAGTTTAGGGCTCTG 59.903 42.308 0.00 0.00 0.00 3.35
3488 4544 3.995636 TGAGTAGTTTAGGGCTCTGGAT 58.004 45.455 0.00 0.00 0.00 3.41
3498 4554 3.830121 AGGGCTCTGGATTCATCATTTC 58.170 45.455 0.00 0.00 0.00 2.17
3508 4564 7.835682 TCTGGATTCATCATTTCATACTTGGTT 59.164 33.333 0.00 0.00 0.00 3.67
3511 4567 7.068593 GGATTCATCATTTCATACTTGGTTGGA 59.931 37.037 0.00 0.00 0.00 3.53
3722 4889 4.279420 GTGTTCTTTTCAAAGGAGCAGGAT 59.721 41.667 0.00 0.00 36.67 3.24
3725 4892 4.927049 TCTTTTCAAAGGAGCAGGATCAT 58.073 39.130 0.00 0.00 36.67 2.45
3762 4929 3.571401 CAGGACTTGCCATTCTGAAACTT 59.429 43.478 0.00 0.00 40.02 2.66
3799 4966 3.610911 TCTTCGTCATCTGCTAGAGTCA 58.389 45.455 0.00 0.00 0.00 3.41
3817 4984 6.073314 AGAGTCACACTGTTACTTACCCTTA 58.927 40.000 0.00 0.00 0.00 2.69
3956 5123 4.336713 AGGTCTCTCAACTTGCAAAACTTC 59.663 41.667 0.00 0.00 0.00 3.01
4037 5204 8.879427 TCTAGTAATGCATAGAAGGCACTATA 57.121 34.615 0.00 0.00 45.23 1.31
4116 5300 6.765036 AGGCATTATGACACAAGAGTTGATAG 59.235 38.462 0.00 0.00 0.00 2.08
4581 5765 8.950007 TTTTCCTCCTGTATAGGTTTTTCATT 57.050 30.769 5.31 0.00 44.88 2.57
5090 6373 4.269363 GGTTCGTTCAGTCGTATAATTGGG 59.731 45.833 0.00 0.00 0.00 4.12
5238 6525 1.891919 GACCACAACTCTTGCCGCA 60.892 57.895 0.00 0.00 0.00 5.69
5287 6574 2.599848 CCGTGAAGCTGAGAAAAACGTG 60.600 50.000 0.00 0.00 0.00 4.49
5423 6866 7.096551 CCTTTAATAACAGGTTGGGTCAATTG 58.903 38.462 0.00 0.00 0.00 2.32
5448 6891 8.992073 TGTGATTAATATTGATCTGTGGATTCG 58.008 33.333 18.06 0.00 31.46 3.34
5478 6921 3.120649 GCCAGTAGTTCGTACTTGCTTTG 60.121 47.826 0.00 0.00 43.87 2.77
5701 7148 3.228453 AGGGAATCATTCATGTGGCATC 58.772 45.455 0.00 0.00 0.00 3.91
5702 7149 3.117246 AGGGAATCATTCATGTGGCATCT 60.117 43.478 0.00 0.00 0.00 2.90
5703 7150 4.105217 AGGGAATCATTCATGTGGCATCTA 59.895 41.667 0.00 0.00 0.00 1.98
5704 7151 4.828939 GGGAATCATTCATGTGGCATCTAA 59.171 41.667 0.00 0.00 0.00 2.10
5705 7152 5.278660 GGGAATCATTCATGTGGCATCTAAC 60.279 44.000 0.00 0.00 0.00 2.34
5706 7153 5.533903 GGAATCATTCATGTGGCATCTAACT 59.466 40.000 0.00 0.00 0.00 2.24
5707 7154 6.040166 GGAATCATTCATGTGGCATCTAACTT 59.960 38.462 0.00 0.00 0.00 2.66
5708 7155 7.414222 AATCATTCATGTGGCATCTAACTTT 57.586 32.000 0.00 0.00 0.00 2.66
5709 7156 6.839124 TCATTCATGTGGCATCTAACTTTT 57.161 33.333 0.00 0.00 0.00 2.27
5710 7157 7.230849 TCATTCATGTGGCATCTAACTTTTT 57.769 32.000 0.00 0.00 0.00 1.94
5731 7178 3.611766 TTTTTGCGGGAAAAACTTCCA 57.388 38.095 14.93 0.00 42.89 3.53
5732 7179 3.611766 TTTTGCGGGAAAAACTTCCAA 57.388 38.095 4.86 0.00 42.89 3.53
5733 7180 3.828875 TTTGCGGGAAAAACTTCCAAT 57.171 38.095 6.26 0.00 42.89 3.16
5734 7181 3.378911 TTGCGGGAAAAACTTCCAATC 57.621 42.857 6.26 0.00 42.89 2.67
5735 7182 2.593026 TGCGGGAAAAACTTCCAATCT 58.407 42.857 6.26 0.00 42.89 2.40
5736 7183 3.757270 TGCGGGAAAAACTTCCAATCTA 58.243 40.909 6.26 0.00 42.89 1.98
5737 7184 4.340617 TGCGGGAAAAACTTCCAATCTAT 58.659 39.130 6.26 0.00 42.89 1.98
5738 7185 4.770010 TGCGGGAAAAACTTCCAATCTATT 59.230 37.500 6.26 0.00 42.89 1.73
5739 7186 5.105917 TGCGGGAAAAACTTCCAATCTATTC 60.106 40.000 6.26 0.00 42.89 1.75
5740 7187 5.105917 GCGGGAAAAACTTCCAATCTATTCA 60.106 40.000 6.26 0.00 42.89 2.57
5741 7188 6.405842 GCGGGAAAAACTTCCAATCTATTCAT 60.406 38.462 6.26 0.00 42.89 2.57
5742 7189 7.196331 CGGGAAAAACTTCCAATCTATTCATC 58.804 38.462 6.26 0.00 42.89 2.92
5743 7190 7.067494 CGGGAAAAACTTCCAATCTATTCATCT 59.933 37.037 6.26 0.00 42.89 2.90
5744 7191 8.753133 GGGAAAAACTTCCAATCTATTCATCTT 58.247 33.333 6.26 0.00 42.89 2.40
5745 7192 9.794685 GGAAAAACTTCCAATCTATTCATCTTC 57.205 33.333 0.00 0.00 40.79 2.87
5750 7197 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
5751 7198 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
5753 7200 9.856162 TTCCAATCTATTCATCTTCAATCATGA 57.144 29.630 0.00 0.00 0.00 3.07
5763 7210 8.579682 TCATCTTCAATCATGATAGTACAACG 57.420 34.615 9.04 0.00 34.96 4.10
5764 7211 8.413229 TCATCTTCAATCATGATAGTACAACGA 58.587 33.333 9.04 0.00 34.96 3.85
5765 7212 9.034544 CATCTTCAATCATGATAGTACAACGAA 57.965 33.333 9.04 2.03 34.96 3.85
5766 7213 8.407457 TCTTCAATCATGATAGTACAACGAAC 57.593 34.615 9.04 0.00 34.96 3.95
5767 7214 8.032451 TCTTCAATCATGATAGTACAACGAACA 58.968 33.333 9.04 0.00 34.96 3.18
5768 7215 7.520119 TCAATCATGATAGTACAACGAACAC 57.480 36.000 9.04 0.00 0.00 3.32
5769 7216 7.320399 TCAATCATGATAGTACAACGAACACT 58.680 34.615 9.04 0.00 0.00 3.55
5770 7217 8.463607 TCAATCATGATAGTACAACGAACACTA 58.536 33.333 9.04 0.00 0.00 2.74
5771 7218 8.746751 CAATCATGATAGTACAACGAACACTAG 58.253 37.037 9.04 0.00 0.00 2.57
5772 7219 7.619964 TCATGATAGTACAACGAACACTAGA 57.380 36.000 0.00 0.00 0.00 2.43
5773 7220 8.047413 TCATGATAGTACAACGAACACTAGAA 57.953 34.615 0.00 0.00 0.00 2.10
5774 7221 8.517056 TCATGATAGTACAACGAACACTAGAAA 58.483 33.333 0.00 0.00 0.00 2.52
5775 7222 9.302345 CATGATAGTACAACGAACACTAGAAAT 57.698 33.333 0.00 0.00 0.00 2.17
5781 7228 9.302345 AGTACAACGAACACTAGAAATATCATG 57.698 33.333 0.00 0.00 0.00 3.07
5782 7229 9.084164 GTACAACGAACACTAGAAATATCATGT 57.916 33.333 0.00 0.00 0.00 3.21
5783 7230 7.963981 ACAACGAACACTAGAAATATCATGTG 58.036 34.615 0.00 0.00 37.20 3.21
5784 7231 7.064609 ACAACGAACACTAGAAATATCATGTGG 59.935 37.037 0.00 0.00 36.21 4.17
5785 7232 5.523916 ACGAACACTAGAAATATCATGTGGC 59.476 40.000 0.00 0.00 36.21 5.01
5786 7233 5.523552 CGAACACTAGAAATATCATGTGGCA 59.476 40.000 0.00 0.00 36.21 4.92
5787 7234 6.203530 CGAACACTAGAAATATCATGTGGCAT 59.796 38.462 0.00 0.00 36.21 4.40
5909 7356 5.534207 TGAAAAGACGTACCAGTCCTAAA 57.466 39.130 0.00 0.00 41.83 1.85
5910 7357 5.916318 TGAAAAGACGTACCAGTCCTAAAA 58.084 37.500 0.00 0.00 41.83 1.52
5911 7358 6.347696 TGAAAAGACGTACCAGTCCTAAAAA 58.652 36.000 0.00 0.00 41.83 1.94
5912 7359 6.993902 TGAAAAGACGTACCAGTCCTAAAAAT 59.006 34.615 0.00 0.00 41.83 1.82
5913 7360 8.149647 TGAAAAGACGTACCAGTCCTAAAAATA 58.850 33.333 0.00 0.00 41.83 1.40
5914 7361 8.907222 AAAAGACGTACCAGTCCTAAAAATAA 57.093 30.769 0.00 0.00 41.83 1.40
5925 7372 7.707893 CCAGTCCTAAAAATAATTTGGAGCATG 59.292 37.037 0.00 0.00 35.38 4.06
5965 7412 0.675083 TGAACATTTGCCCAGCACTG 59.325 50.000 0.00 0.00 38.71 3.66
5971 7418 3.131577 ACATTTGCCCAGCACTGATTATG 59.868 43.478 0.00 0.00 38.71 1.90
6090 7537 2.289547 CAGGTTCCGTTGTCATTTCGTT 59.710 45.455 0.00 0.00 0.00 3.85
6136 7583 0.824109 CACGGAACCTCATGGAGCTA 59.176 55.000 0.00 0.00 37.04 3.32
6321 7768 2.358737 GTCAACAGACCAGGGGCG 60.359 66.667 0.00 0.00 0.00 6.13
6567 8132 5.122869 CAGCTTGCAAGTAGTGACAACATAT 59.877 40.000 26.55 0.00 0.00 1.78
6574 8139 7.277760 TGCAAGTAGTGACAACATATGTGTATC 59.722 37.037 9.63 8.08 44.12 2.24
6654 8219 6.756074 GGAGTGAGTATTTCTGTGATCTTCAG 59.244 42.308 10.69 10.69 0.00 3.02
6666 8231 4.768448 TGTGATCTTCAGAAAATGCATGGT 59.232 37.500 0.00 0.00 0.00 3.55
6668 8233 5.575606 GTGATCTTCAGAAAATGCATGGTTG 59.424 40.000 0.00 0.00 0.00 3.77
6683 8249 0.685097 GGTTGCTTTTTCCCCCTTCC 59.315 55.000 0.00 0.00 0.00 3.46
6700 8266 4.752101 CCCTTCCGTCTTGATGATTATCAC 59.248 45.833 0.00 0.00 42.79 3.06
6757 8324 6.480651 TGTTGTTACACATCTGTATTGTCGTT 59.519 34.615 0.00 0.00 32.70 3.85
6775 8342 5.294799 TGTCGTTGTTGCTTTATTGTGTAGT 59.705 36.000 0.00 0.00 0.00 2.73
6793 8551 0.385473 GTCCAAACGCATTGTCGTGG 60.385 55.000 6.85 5.68 42.46 4.94
6795 8553 1.511318 CCAAACGCATTGTCGTGGGA 61.511 55.000 13.91 0.00 42.46 4.37
6813 8571 6.551975 TCGTGGGATAATGGATAGAGTACAAA 59.448 38.462 0.00 0.00 0.00 2.83
6833 8591 5.471456 ACAAAACATGTTCTGGTTTTTGCAA 59.529 32.000 16.03 0.00 42.17 4.08
6841 8599 5.178438 TGTTCTGGTTTTTGCAAACAGAAAC 59.822 36.000 30.07 24.98 45.50 2.78
6846 8604 7.491048 TCTGGTTTTTGCAAACAGAAACTAATC 59.509 33.333 21.96 9.53 45.52 1.75
6898 8656 5.008331 CACCTGCCAGATGCTATATGAAAT 58.992 41.667 0.00 0.00 42.00 2.17
6911 8669 9.941325 ATGCTATATGAAATCTAGAGTTCTTGG 57.059 33.333 27.67 17.32 36.47 3.61
6949 8707 0.742990 TCGATCGGGTGGTGCATTTC 60.743 55.000 16.41 0.00 0.00 2.17
6980 8795 4.336280 GGGGTTTGCTTAGACTTGATCTT 58.664 43.478 0.00 0.00 39.04 2.40
6981 8796 4.156739 GGGGTTTGCTTAGACTTGATCTTG 59.843 45.833 0.00 0.00 39.04 3.02
6987 8802 4.187694 GCTTAGACTTGATCTTGAGGGTG 58.812 47.826 0.00 0.00 39.04 4.61
6988 8803 4.764172 CTTAGACTTGATCTTGAGGGTGG 58.236 47.826 0.00 0.00 39.04 4.61
6991 8806 3.848975 AGACTTGATCTTGAGGGTGGAAT 59.151 43.478 0.00 0.00 31.62 3.01
7023 8839 0.909623 CTTTGGGTGTAGGATCCGGT 59.090 55.000 5.98 0.00 0.00 5.28
7025 8841 0.545787 TTGGGTGTAGGATCCGGTGT 60.546 55.000 5.98 0.00 0.00 4.16
7027 8843 0.686769 GGGTGTAGGATCCGGTGTCT 60.687 60.000 5.98 0.00 0.00 3.41
7028 8844 0.460311 GGTGTAGGATCCGGTGTCTG 59.540 60.000 5.98 0.00 0.00 3.51
7036 8852 1.768684 ATCCGGTGTCTGTGCCACTT 61.769 55.000 0.00 0.00 33.31 3.16
7039 8855 1.095228 CGGTGTCTGTGCCACTTGTT 61.095 55.000 0.00 0.00 33.31 2.83
7043 8859 2.094752 GTGTCTGTGCCACTTGTTTGTT 60.095 45.455 0.00 0.00 0.00 2.83
7044 8860 2.094803 TGTCTGTGCCACTTGTTTGTTG 60.095 45.455 0.00 0.00 0.00 3.33
7045 8861 2.094752 GTCTGTGCCACTTGTTTGTTGT 60.095 45.455 0.00 0.00 0.00 3.32
7046 8862 2.560542 TCTGTGCCACTTGTTTGTTGTT 59.439 40.909 0.00 0.00 0.00 2.83
7047 8863 2.923020 CTGTGCCACTTGTTTGTTGTTC 59.077 45.455 0.00 0.00 0.00 3.18
7048 8864 2.560542 TGTGCCACTTGTTTGTTGTTCT 59.439 40.909 0.00 0.00 0.00 3.01
7049 8865 3.006323 TGTGCCACTTGTTTGTTGTTCTT 59.994 39.130 0.00 0.00 0.00 2.52
7055 8871 6.618379 GCCACTTGTTTGTTGTTCTTTTCTTG 60.618 38.462 0.00 0.00 0.00 3.02
7064 8880 4.981806 TGTTCTTTTCTTGGAGGTGTTG 57.018 40.909 0.00 0.00 0.00 3.33
7081 8897 2.223479 TGTTGCTTTTGAAGAACCGCTC 60.223 45.455 0.00 0.00 0.00 5.03
7083 8899 1.873591 TGCTTTTGAAGAACCGCTCTC 59.126 47.619 0.00 0.00 31.02 3.20
7084 8900 1.136224 GCTTTTGAAGAACCGCTCTCG 60.136 52.381 0.00 0.00 31.02 4.04
7089 8905 3.587797 TGAAGAACCGCTCTCGTAATT 57.412 42.857 0.00 0.00 31.02 1.40
7090 8906 3.921677 TGAAGAACCGCTCTCGTAATTT 58.078 40.909 0.00 0.00 31.02 1.82
7098 8914 3.469629 CGCTCTCGTAATTTGTGTGTTG 58.530 45.455 0.00 0.00 0.00 3.33
7115 8931 5.700832 GTGTGTTGTCATGAGATAGTTGGAA 59.299 40.000 0.00 0.00 0.00 3.53
7117 8933 5.122396 GTGTTGTCATGAGATAGTTGGAACC 59.878 44.000 0.00 0.00 0.00 3.62
7150 8966 7.119116 TGTTGATGTACATCTTTAATCGCTGTT 59.881 33.333 30.67 0.00 38.60 3.16
7154 8970 9.982291 GATGTACATCTTTAATCGCTGTTTTTA 57.018 29.630 25.52 0.00 35.04 1.52
7156 8972 9.982291 TGTACATCTTTAATCGCTGTTTTTATC 57.018 29.630 0.00 0.00 0.00 1.75
7157 8973 9.144085 GTACATCTTTAATCGCTGTTTTTATCG 57.856 33.333 0.00 0.00 0.00 2.92
7158 8974 6.687105 ACATCTTTAATCGCTGTTTTTATCGC 59.313 34.615 0.00 0.00 0.00 4.58
7159 8975 6.417191 TCTTTAATCGCTGTTTTTATCGCT 57.583 33.333 0.00 0.00 0.00 4.93
7160 8976 6.837992 TCTTTAATCGCTGTTTTTATCGCTT 58.162 32.000 0.00 0.00 0.00 4.68
7161 8977 7.302524 TCTTTAATCGCTGTTTTTATCGCTTT 58.697 30.769 0.00 0.00 0.00 3.51
7162 8978 6.846870 TTAATCGCTGTTTTTATCGCTTTG 57.153 33.333 0.00 0.00 0.00 2.77
7163 8979 3.196007 TCGCTGTTTTTATCGCTTTGG 57.804 42.857 0.00 0.00 0.00 3.28
7164 8980 2.550606 TCGCTGTTTTTATCGCTTTGGT 59.449 40.909 0.00 0.00 0.00 3.67
7165 8981 3.003897 TCGCTGTTTTTATCGCTTTGGTT 59.996 39.130 0.00 0.00 0.00 3.67
7166 8982 3.733727 CGCTGTTTTTATCGCTTTGGTTT 59.266 39.130 0.00 0.00 0.00 3.27
7167 8983 4.208253 CGCTGTTTTTATCGCTTTGGTTTT 59.792 37.500 0.00 0.00 0.00 2.43
7168 8984 5.431309 GCTGTTTTTATCGCTTTGGTTTTG 58.569 37.500 0.00 0.00 0.00 2.44
7169 8985 5.006261 GCTGTTTTTATCGCTTTGGTTTTGT 59.994 36.000 0.00 0.00 0.00 2.83
7170 8986 6.456315 GCTGTTTTTATCGCTTTGGTTTTGTT 60.456 34.615 0.00 0.00 0.00 2.83
7171 8987 7.365840 TGTTTTTATCGCTTTGGTTTTGTTT 57.634 28.000 0.00 0.00 0.00 2.83
7172 8988 7.807680 TGTTTTTATCGCTTTGGTTTTGTTTT 58.192 26.923 0.00 0.00 0.00 2.43
7173 8989 8.290325 TGTTTTTATCGCTTTGGTTTTGTTTTT 58.710 25.926 0.00 0.00 0.00 1.94
7202 9018 1.687123 TCTCCGCCTAGGCATAGTTTC 59.313 52.381 32.47 1.43 42.06 2.78
7217 9033 6.144175 GCATAGTTTCGGTCTAGTATGACTC 58.856 44.000 0.00 0.00 37.16 3.36
7235 9051 1.004560 CGGCTCTTTGCTGGTGAGA 60.005 57.895 0.00 0.00 44.06 3.27
7237 9053 0.957888 GGCTCTTTGCTGGTGAGACC 60.958 60.000 0.00 0.00 42.39 3.85
7249 9065 1.001378 GGTGAGACCATTTGTGTGTGC 60.001 52.381 0.00 0.00 38.42 4.57
7261 9077 2.277247 GTGTGCGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
7290 9106 2.093816 TGTTTTGGCTGTGTGCATTCAA 60.094 40.909 0.00 0.00 45.15 2.69
7318 9134 3.541632 CAGATACCGGGTGTTGCTAATT 58.458 45.455 10.66 0.00 0.00 1.40
7319 9135 4.699637 CAGATACCGGGTGTTGCTAATTA 58.300 43.478 10.66 0.00 0.00 1.40
7320 9136 5.305585 CAGATACCGGGTGTTGCTAATTAT 58.694 41.667 10.66 0.00 0.00 1.28
7321 9137 6.460781 CAGATACCGGGTGTTGCTAATTATA 58.539 40.000 10.66 0.00 0.00 0.98
7322 9138 6.932400 CAGATACCGGGTGTTGCTAATTATAA 59.068 38.462 10.66 0.00 0.00 0.98
7323 9139 7.606456 CAGATACCGGGTGTTGCTAATTATAAT 59.394 37.037 10.66 0.00 0.00 1.28
7324 9140 8.161425 AGATACCGGGTGTTGCTAATTATAATT 58.839 33.333 14.86 14.86 0.00 1.40
7325 9141 6.385649 ACCGGGTGTTGCTAATTATAATTG 57.614 37.500 18.98 10.84 0.00 2.32
7355 9171 7.651304 CCCTCGATGCTATATTATGAGTCAATC 59.349 40.741 0.00 0.00 0.00 2.67
7356 9172 8.412456 CCTCGATGCTATATTATGAGTCAATCT 58.588 37.037 0.00 0.00 0.00 2.40
7357 9173 9.235537 CTCGATGCTATATTATGAGTCAATCTG 57.764 37.037 0.00 0.00 0.00 2.90
7358 9174 8.960591 TCGATGCTATATTATGAGTCAATCTGA 58.039 33.333 0.00 0.00 0.00 3.27
7359 9175 9.578439 CGATGCTATATTATGAGTCAATCTGAA 57.422 33.333 0.00 0.00 0.00 3.02
7368 9184 9.790344 ATTATGAGTCAATCTGAATAAGGAAGG 57.210 33.333 0.00 0.00 0.00 3.46
7369 9185 5.994250 TGAGTCAATCTGAATAAGGAAGGG 58.006 41.667 0.00 0.00 0.00 3.95
7370 9186 5.104360 TGAGTCAATCTGAATAAGGAAGGGG 60.104 44.000 0.00 0.00 0.00 4.79
7371 9187 3.885901 GTCAATCTGAATAAGGAAGGGGC 59.114 47.826 0.00 0.00 0.00 5.80
7372 9188 3.527253 TCAATCTGAATAAGGAAGGGGCA 59.473 43.478 0.00 0.00 0.00 5.36
7373 9189 4.017591 TCAATCTGAATAAGGAAGGGGCAA 60.018 41.667 0.00 0.00 0.00 4.52
7374 9190 4.821532 ATCTGAATAAGGAAGGGGCAAT 57.178 40.909 0.00 0.00 0.00 3.56
7375 9191 4.608170 TCTGAATAAGGAAGGGGCAATT 57.392 40.909 0.00 0.00 0.00 2.32
7376 9192 4.536765 TCTGAATAAGGAAGGGGCAATTC 58.463 43.478 0.00 0.00 0.00 2.17
7377 9193 3.287222 TGAATAAGGAAGGGGCAATTCG 58.713 45.455 0.00 0.00 0.00 3.34
7378 9194 2.364972 ATAAGGAAGGGGCAATTCGG 57.635 50.000 0.00 0.00 0.00 4.30
7379 9195 0.996583 TAAGGAAGGGGCAATTCGGT 59.003 50.000 0.00 0.00 0.00 4.69
7380 9196 0.611896 AAGGAAGGGGCAATTCGGTG 60.612 55.000 0.00 0.00 0.00 4.94
7381 9197 2.710902 GGAAGGGGCAATTCGGTGC 61.711 63.158 0.00 0.00 44.14 5.01
7387 9203 2.676471 GCAATTCGGTGCCCAGGT 60.676 61.111 0.00 0.00 38.66 4.00
7388 9204 2.700773 GCAATTCGGTGCCCAGGTC 61.701 63.158 0.00 0.00 38.66 3.85
7389 9205 2.046285 CAATTCGGTGCCCAGGTCC 61.046 63.158 0.00 0.00 0.00 4.46
7390 9206 2.534396 AATTCGGTGCCCAGGTCCA 61.534 57.895 0.00 0.00 0.00 4.02
7391 9207 2.484287 AATTCGGTGCCCAGGTCCAG 62.484 60.000 0.00 0.00 0.00 3.86
7392 9208 4.631740 TCGGTGCCCAGGTCCAGA 62.632 66.667 0.00 0.00 0.00 3.86
7393 9209 3.402681 CGGTGCCCAGGTCCAGAT 61.403 66.667 0.00 0.00 0.00 2.90
7394 9210 2.273449 GGTGCCCAGGTCCAGATG 59.727 66.667 0.00 0.00 0.00 2.90
7395 9211 2.439156 GTGCCCAGGTCCAGATGC 60.439 66.667 0.00 0.00 0.00 3.91
7396 9212 2.934932 TGCCCAGGTCCAGATGCA 60.935 61.111 0.00 0.00 0.00 3.96
7397 9213 2.439156 GCCCAGGTCCAGATGCAC 60.439 66.667 0.00 0.00 0.00 4.57
7398 9214 2.273449 CCCAGGTCCAGATGCACC 59.727 66.667 0.00 0.00 0.00 5.01
7399 9215 2.304056 CCCAGGTCCAGATGCACCT 61.304 63.158 0.00 0.00 44.42 4.00
7401 9217 4.567195 AGGTCCAGATGCACCTGA 57.433 55.556 10.58 0.00 41.79 3.86
7402 9218 3.018280 AGGTCCAGATGCACCTGAT 57.982 52.632 10.58 0.00 41.79 2.90
7403 9219 2.180946 AGGTCCAGATGCACCTGATA 57.819 50.000 10.58 0.00 41.79 2.15
7404 9220 2.699160 AGGTCCAGATGCACCTGATAT 58.301 47.619 10.58 0.00 41.79 1.63
7405 9221 2.636893 AGGTCCAGATGCACCTGATATC 59.363 50.000 10.58 0.00 41.79 1.63
7406 9222 2.289945 GGTCCAGATGCACCTGATATCC 60.290 54.545 10.58 2.35 36.29 2.59
7407 9223 1.980765 TCCAGATGCACCTGATATCCC 59.019 52.381 10.58 0.00 36.29 3.85
7408 9224 1.701292 CCAGATGCACCTGATATCCCA 59.299 52.381 10.58 0.00 36.29 4.37
7409 9225 2.290134 CCAGATGCACCTGATATCCCAG 60.290 54.545 10.58 0.00 36.29 4.45
7410 9226 2.636403 CAGATGCACCTGATATCCCAGA 59.364 50.000 0.00 0.00 36.29 3.86
7411 9227 2.636893 AGATGCACCTGATATCCCAGAC 59.363 50.000 0.00 0.00 36.29 3.51
7412 9228 0.752658 TGCACCTGATATCCCAGACG 59.247 55.000 0.00 0.00 36.29 4.18
7413 9229 0.753262 GCACCTGATATCCCAGACGT 59.247 55.000 0.00 0.00 36.29 4.34
7414 9230 1.139058 GCACCTGATATCCCAGACGTT 59.861 52.381 0.00 0.00 36.29 3.99
7415 9231 2.826428 CACCTGATATCCCAGACGTTG 58.174 52.381 0.00 0.00 36.29 4.10
7417 9233 1.762957 CCTGATATCCCAGACGTTGGT 59.237 52.381 13.41 2.12 46.25 3.67
7418 9234 2.170607 CCTGATATCCCAGACGTTGGTT 59.829 50.000 13.41 3.27 46.25 3.67
7419 9235 3.458189 CTGATATCCCAGACGTTGGTTC 58.542 50.000 13.41 7.29 46.25 3.62
7420 9236 2.835156 TGATATCCCAGACGTTGGTTCA 59.165 45.455 13.41 9.04 46.25 3.18
7421 9237 3.454447 TGATATCCCAGACGTTGGTTCAT 59.546 43.478 13.41 6.98 46.25 2.57
7422 9238 2.113860 ATCCCAGACGTTGGTTCATG 57.886 50.000 13.41 0.00 46.25 3.07
7423 9239 0.605319 TCCCAGACGTTGGTTCATGC 60.605 55.000 13.41 0.00 46.25 4.06
7424 9240 1.497278 CCAGACGTTGGTTCATGCG 59.503 57.895 8.17 0.00 42.41 4.73
7425 9241 1.227999 CCAGACGTTGGTTCATGCGT 61.228 55.000 8.17 0.00 42.41 5.24
7426 9242 0.586319 CAGACGTTGGTTCATGCGTT 59.414 50.000 0.00 0.00 37.71 4.84
7427 9243 0.586319 AGACGTTGGTTCATGCGTTG 59.414 50.000 0.00 0.00 37.71 4.10
7428 9244 0.385473 GACGTTGGTTCATGCGTTGG 60.385 55.000 0.00 0.00 37.71 3.77
7429 9245 1.081509 CGTTGGTTCATGCGTTGGG 60.082 57.895 0.00 0.00 0.00 4.12
7430 9246 1.511318 CGTTGGTTCATGCGTTGGGA 61.511 55.000 0.00 0.00 0.00 4.37
7431 9247 0.887933 GTTGGTTCATGCGTTGGGAT 59.112 50.000 0.00 0.00 0.00 3.85
7432 9248 0.887247 TTGGTTCATGCGTTGGGATG 59.113 50.000 0.00 0.00 42.78 3.51
7433 9249 1.139520 GGTTCATGCGTTGGGATGC 59.860 57.895 0.00 0.00 41.34 3.91
7434 9250 1.315257 GGTTCATGCGTTGGGATGCT 61.315 55.000 0.00 0.00 41.34 3.79
7435 9251 0.179156 GTTCATGCGTTGGGATGCTG 60.179 55.000 0.00 0.00 41.34 4.41
7436 9252 1.314534 TTCATGCGTTGGGATGCTGG 61.315 55.000 0.00 0.00 41.34 4.85
7437 9253 1.750018 CATGCGTTGGGATGCTGGA 60.750 57.895 0.00 0.00 38.64 3.86
7438 9254 1.001020 ATGCGTTGGGATGCTGGAA 60.001 52.632 0.00 0.00 38.64 3.53
7439 9255 0.611618 ATGCGTTGGGATGCTGGAAA 60.612 50.000 0.00 0.00 38.64 3.13
7440 9256 0.611618 TGCGTTGGGATGCTGGAAAT 60.612 50.000 0.00 0.00 38.64 2.17
7441 9257 0.532115 GCGTTGGGATGCTGGAAATT 59.468 50.000 0.00 0.00 34.88 1.82
7442 9258 1.736696 GCGTTGGGATGCTGGAAATTG 60.737 52.381 0.00 0.00 34.88 2.32
7443 9259 1.736696 CGTTGGGATGCTGGAAATTGC 60.737 52.381 0.00 0.00 0.00 3.56
7444 9260 1.551883 GTTGGGATGCTGGAAATTGCT 59.448 47.619 0.00 0.00 0.00 3.91
7445 9261 2.760092 GTTGGGATGCTGGAAATTGCTA 59.240 45.455 0.00 0.00 0.00 3.49
7446 9262 2.378038 TGGGATGCTGGAAATTGCTAC 58.622 47.619 0.00 0.00 0.00 3.58
7447 9263 2.025037 TGGGATGCTGGAAATTGCTACT 60.025 45.455 0.00 0.00 0.00 2.57
7448 9264 2.360165 GGGATGCTGGAAATTGCTACTG 59.640 50.000 0.00 0.00 0.00 2.74
7449 9265 2.223665 GGATGCTGGAAATTGCTACTGC 60.224 50.000 0.00 0.00 40.20 4.40
7459 9275 4.085302 GCTACTGCAGCGTCAGAG 57.915 61.111 15.27 2.90 41.37 3.35
7460 9276 2.164026 GCTACTGCAGCGTCAGAGC 61.164 63.158 15.27 9.40 41.37 4.09
7461 9277 1.871345 CTACTGCAGCGTCAGAGCG 60.871 63.158 15.27 0.00 43.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.030717 CGAACGAGGGAGAGATATGTGG 60.031 54.545 0.00 0.00 0.00 4.17
37 38 1.211212 TCCACGAACGAGGGAGAGATA 59.789 52.381 10.32 0.00 0.00 1.98
49 50 0.389948 AACGCAGGAGATCCACGAAC 60.390 55.000 17.81 0.00 39.31 3.95
54 55 0.385751 GATCGAACGCAGGAGATCCA 59.614 55.000 0.92 0.00 38.89 3.41
55 56 0.385751 TGATCGAACGCAGGAGATCC 59.614 55.000 0.00 0.00 38.85 3.36
161 162 6.535150 CGTGATCATGTAAAGTACCTGTGAAT 59.465 38.462 6.77 0.00 0.00 2.57
186 187 1.630244 GAGTGCGAGTGCCACATGAC 61.630 60.000 0.00 0.00 41.78 3.06
200 201 2.401766 CGCTTGTGGATGGGAGTGC 61.402 63.158 0.00 0.00 0.00 4.40
274 275 3.141398 GTGAGATCAAACACTCAGGCAA 58.859 45.455 0.00 0.00 42.56 4.52
296 297 5.353123 GTGGTGGACGTACAAATACAATCAT 59.647 40.000 0.00 0.00 0.00 2.45
432 441 9.626045 CCTGAAATTTTTAGGAGTTGTATTCAC 57.374 33.333 13.34 0.00 33.33 3.18
436 445 7.947890 TGGACCTGAAATTTTTAGGAGTTGTAT 59.052 33.333 22.76 2.53 35.55 2.29
454 463 5.935945 TGTTCATTTAGAGTTTGGACCTGA 58.064 37.500 0.00 0.00 0.00 3.86
610 621 6.670464 TCACAAGGAATATGACTACAACCCTA 59.330 38.462 0.00 0.00 0.00 3.53
611 622 5.487488 TCACAAGGAATATGACTACAACCCT 59.513 40.000 0.00 0.00 0.00 4.34
682 693 4.082845 TCCCATGCTCCGATTTTAAAACA 58.917 39.130 1.97 0.00 0.00 2.83
696 707 2.270205 CTCGGTGCTTCCCATGCT 59.730 61.111 0.00 0.00 0.00 3.79
697 708 3.512516 GCTCGGTGCTTCCCATGC 61.513 66.667 0.00 0.00 38.95 4.06
698 709 2.046023 TGCTCGGTGCTTCCCATG 60.046 61.111 3.53 0.00 43.37 3.66
700 711 4.329545 GGTGCTCGGTGCTTCCCA 62.330 66.667 3.53 0.00 43.37 4.37
701 712 4.021925 AGGTGCTCGGTGCTTCCC 62.022 66.667 3.53 1.50 43.37 3.97
702 713 2.731691 TTCAGGTGCTCGGTGCTTCC 62.732 60.000 3.53 6.24 43.37 3.46
710 730 0.947244 GGGCAATATTCAGGTGCTCG 59.053 55.000 0.00 0.00 38.36 5.03
720 740 2.146998 AGTGATGGAGGGGGCAATATT 58.853 47.619 0.00 0.00 0.00 1.28
726 746 1.674057 CGATAGTGATGGAGGGGGC 59.326 63.158 0.00 0.00 0.00 5.80
837 870 2.527497 GTAGCTGATAGGGGGAGTACC 58.473 57.143 0.00 0.00 39.11 3.34
838 871 2.161030 CGTAGCTGATAGGGGGAGTAC 58.839 57.143 0.00 0.00 0.00 2.73
839 872 1.075050 CCGTAGCTGATAGGGGGAGTA 59.925 57.143 3.83 0.00 36.03 2.59
840 873 0.178958 CCGTAGCTGATAGGGGGAGT 60.179 60.000 3.83 0.00 36.03 3.85
841 874 1.536943 GCCGTAGCTGATAGGGGGAG 61.537 65.000 12.93 0.00 39.42 4.30
852 885 2.362632 AAGTCGAGGGCCGTAGCT 60.363 61.111 0.00 0.00 39.73 3.32
912 1027 0.034089 CTAACTGGGCCTTTCTGGGG 60.034 60.000 4.53 0.00 36.00 4.96
1073 1208 4.475135 GGAGGTGAAGGGAGGCGC 62.475 72.222 0.00 0.00 0.00 6.53
1074 1209 4.148825 CGGAGGTGAAGGGAGGCG 62.149 72.222 0.00 0.00 0.00 5.52
1405 1540 6.991938 ACGTGTAGTGTATGGGTAAACTAAA 58.008 36.000 0.00 0.00 33.47 1.85
1406 1541 6.588719 ACGTGTAGTGTATGGGTAAACTAA 57.411 37.500 0.00 0.00 33.47 2.24
1469 1604 3.192001 CACATTGCAACCAGAGCATTACT 59.808 43.478 0.00 0.00 42.33 2.24
1504 1639 4.335400 TTTTGGGAGGAAAACTGAATGC 57.665 40.909 0.00 0.00 0.00 3.56
1507 1642 7.070571 ACACATATTTTTGGGAGGAAAACTGAA 59.929 33.333 0.00 0.00 0.00 3.02
1514 1649 6.015918 ACATCACACATATTTTTGGGAGGAA 58.984 36.000 0.00 0.00 31.36 3.36
1542 1677 8.753133 AGACTCTGTCAATCTGATACACAATTA 58.247 33.333 0.46 0.00 34.60 1.40
1546 1681 6.596309 AAGACTCTGTCAATCTGATACACA 57.404 37.500 0.46 0.00 34.60 3.72
1556 1691 7.279536 CACAGTTGCATATAAGACTCTGTCAAT 59.720 37.037 0.00 0.00 34.60 2.57
1623 1761 5.992829 ACGATCCACACATTACAAAGTTACA 59.007 36.000 0.00 0.00 0.00 2.41
1655 1793 2.833794 GCCTACTGCATTGGATCGTTA 58.166 47.619 4.26 0.00 40.77 3.18
1743 1882 5.891551 ACAAAAGGCATTTCCCTCGTTATAT 59.108 36.000 0.00 0.00 32.93 0.86
1744 1883 5.124776 CACAAAAGGCATTTCCCTCGTTATA 59.875 40.000 0.00 0.00 32.93 0.98
1749 1888 1.067635 CCACAAAAGGCATTTCCCTCG 60.068 52.381 0.00 0.00 32.93 4.63
1807 1946 4.040952 AGTGCTCTTCTAATATCCCGCATT 59.959 41.667 0.00 0.00 0.00 3.56
1971 2113 2.415512 GCCTACAGCCTTTTCAGTAACG 59.584 50.000 0.00 0.00 34.35 3.18
1987 2129 1.539065 CCGGATCACATCAGTGCCTAC 60.539 57.143 0.00 0.00 45.49 3.18
2109 2252 1.210722 TGCACCCGTCAATAATGGCTA 59.789 47.619 0.00 0.00 32.01 3.93
2142 2285 4.365514 TCCTCAATTAAGGTCACTTGCA 57.634 40.909 0.00 0.00 37.53 4.08
2143 2286 5.904362 ATTCCTCAATTAAGGTCACTTGC 57.096 39.130 0.00 0.00 37.53 4.01
2175 2318 5.531287 AGACCACATTCAGTTAGTCCAAAAC 59.469 40.000 0.00 0.00 33.40 2.43
2205 2348 9.881529 GAGCTAGAAGTACACATAGTATTACAC 57.118 37.037 0.00 0.00 34.67 2.90
2217 2360 5.677567 AGTCCTCTAGAGCTAGAAGTACAC 58.322 45.833 14.73 0.00 41.22 2.90
2318 2461 1.142748 CGTTGGGCCAGTTTTTGCA 59.857 52.632 6.23 0.00 0.00 4.08
2532 2683 2.182842 GGTCAATAGCAGCAGGCCG 61.183 63.158 0.00 0.00 46.50 6.13
2603 2755 4.379374 AAACGTTTCGAACTCAATACGG 57.621 40.909 18.67 4.84 33.66 4.02
2615 2767 6.849305 ACACTTATTAGCAAGAAAACGTTTCG 59.151 34.615 15.01 4.78 0.00 3.46
2637 2789 2.380084 TGAATCGAAGGTAGCCACAC 57.620 50.000 0.00 0.00 0.00 3.82
2664 2816 7.403312 AGATATGCATTACTGGTAGCTCTAG 57.597 40.000 3.54 0.00 0.00 2.43
2906 3187 5.063880 ACAGGACTGTTTTAGAACCATGAC 58.936 41.667 0.00 0.00 41.83 3.06
2939 3230 6.149308 TGTGTATGAAATTAAGTCAGCTGGTG 59.851 38.462 15.13 0.00 0.00 4.17
2958 4010 3.716353 TCTGGTGCCCAATATCTGTGTAT 59.284 43.478 0.00 0.00 30.80 2.29
2968 4020 4.458256 TGATTATGATCTGGTGCCCAAT 57.542 40.909 0.00 0.00 30.80 3.16
3049 4101 9.574516 ACAGATTTTGACCTTTTACAGACTTAT 57.425 29.630 0.00 0.00 0.00 1.73
3125 4177 9.744468 AATGAACATTTTTAGTTGAACCACTAC 57.256 29.630 0.00 0.00 0.00 2.73
3229 4281 8.282256 AGGCTAAATAGAGTACCCATCAAAAAT 58.718 33.333 0.00 0.00 0.00 1.82
3238 4290 7.981102 CCATTTAAGGCTAAATAGAGTACCC 57.019 40.000 0.00 0.00 35.88 3.69
3382 4435 3.710209 ATTTCTGTAGGCTTCACTGCT 57.290 42.857 0.00 0.00 0.00 4.24
3485 4541 7.068593 TCCAACCAAGTATGAAATGATGAATCC 59.931 37.037 0.00 0.00 0.00 3.01
3488 4544 7.396907 ACATCCAACCAAGTATGAAATGATGAA 59.603 33.333 0.00 0.00 0.00 2.57
3498 4554 8.561738 AAGTTACTTACATCCAACCAAGTATG 57.438 34.615 0.00 0.00 34.42 2.39
3508 4564 7.853299 TGCATTAGGTAAGTTACTTACATCCA 58.147 34.615 29.08 17.03 45.57 3.41
3511 4567 9.953565 TTTCTGCATTAGGTAAGTTACTTACAT 57.046 29.630 29.08 26.01 45.57 2.29
3722 4889 2.034878 CTGCTACTACAGGGAGCATGA 58.965 52.381 2.87 0.00 44.79 3.07
3762 4929 7.780008 TGACGAAGAGTTTAAACAGATGAAA 57.220 32.000 20.06 0.00 0.00 2.69
3799 4966 6.930068 ATCAGTAAGGGTAAGTAACAGTGT 57.070 37.500 0.00 0.00 0.00 3.55
5060 6343 1.871039 CGACTGAACGAACCCATTTGT 59.129 47.619 0.00 0.00 33.49 2.83
5090 6373 3.067742 CCTTGTTCATGCCTGGAATCATC 59.932 47.826 0.00 0.00 0.00 2.92
5287 6574 8.680903 ACATTGATCATTGACTCCATAAACTTC 58.319 33.333 21.32 0.00 0.00 3.01
5423 6866 8.446273 CCGAATCCACAGATCAATATTAATCAC 58.554 37.037 1.39 0.00 0.00 3.06
5448 6891 3.036075 ACGAACTACTGGCAAACTACC 57.964 47.619 0.00 0.00 0.00 3.18
5678 7125 2.025131 TGCCACATGAATGATTCCCTCA 60.025 45.455 0.00 0.00 38.53 3.86
5724 7171 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
5725 7172 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
5727 7174 9.856162 TCATGATTGAAGATGAATAGATTGGAA 57.144 29.630 0.00 0.00 0.00 3.53
5737 7184 9.034544 CGTTGTACTATCATGATTGAAGATGAA 57.965 33.333 21.64 4.00 34.96 2.57
5738 7185 8.413229 TCGTTGTACTATCATGATTGAAGATGA 58.587 33.333 21.64 12.27 34.96 2.92
5739 7186 8.579682 TCGTTGTACTATCATGATTGAAGATG 57.420 34.615 21.64 10.62 34.96 2.90
5740 7187 9.035607 GTTCGTTGTACTATCATGATTGAAGAT 57.964 33.333 21.64 4.07 34.96 2.40
5741 7188 8.032451 TGTTCGTTGTACTATCATGATTGAAGA 58.968 33.333 21.64 6.21 34.96 2.87
5742 7189 8.110612 GTGTTCGTTGTACTATCATGATTGAAG 58.889 37.037 21.64 12.40 34.96 3.02
5743 7190 7.817478 AGTGTTCGTTGTACTATCATGATTGAA 59.183 33.333 21.64 5.14 34.96 2.69
5744 7191 7.320399 AGTGTTCGTTGTACTATCATGATTGA 58.680 34.615 21.64 1.13 36.00 2.57
5745 7192 7.525688 AGTGTTCGTTGTACTATCATGATTG 57.474 36.000 14.65 14.58 0.00 2.67
5746 7193 8.683615 TCTAGTGTTCGTTGTACTATCATGATT 58.316 33.333 14.65 0.00 0.00 2.57
5747 7194 8.221965 TCTAGTGTTCGTTGTACTATCATGAT 57.778 34.615 13.81 13.81 0.00 2.45
5748 7195 7.619964 TCTAGTGTTCGTTGTACTATCATGA 57.380 36.000 0.00 0.00 0.00 3.07
5749 7196 8.683550 TTTCTAGTGTTCGTTGTACTATCATG 57.316 34.615 0.00 0.00 0.00 3.07
5755 7202 9.302345 CATGATATTTCTAGTGTTCGTTGTACT 57.698 33.333 0.00 0.00 0.00 2.73
5756 7203 9.084164 ACATGATATTTCTAGTGTTCGTTGTAC 57.916 33.333 0.00 0.00 0.00 2.90
5757 7204 9.083080 CACATGATATTTCTAGTGTTCGTTGTA 57.917 33.333 0.00 0.00 0.00 2.41
5758 7205 7.064609 CCACATGATATTTCTAGTGTTCGTTGT 59.935 37.037 0.00 0.00 0.00 3.32
5759 7206 7.401860 CCACATGATATTTCTAGTGTTCGTTG 58.598 38.462 0.00 0.00 0.00 4.10
5760 7207 6.037172 GCCACATGATATTTCTAGTGTTCGTT 59.963 38.462 0.00 0.00 0.00 3.85
5761 7208 5.523916 GCCACATGATATTTCTAGTGTTCGT 59.476 40.000 0.00 0.00 0.00 3.85
5762 7209 5.523552 TGCCACATGATATTTCTAGTGTTCG 59.476 40.000 0.00 0.00 0.00 3.95
5763 7210 6.925610 TGCCACATGATATTTCTAGTGTTC 57.074 37.500 0.00 0.00 0.00 3.18
5770 7217 9.017509 CCAAGTTATATGCCACATGATATTTCT 57.982 33.333 0.00 0.00 0.00 2.52
5771 7218 8.796475 ACCAAGTTATATGCCACATGATATTTC 58.204 33.333 0.00 0.00 0.00 2.17
5772 7219 8.579006 CACCAAGTTATATGCCACATGATATTT 58.421 33.333 0.00 0.00 0.00 1.40
5773 7220 7.944000 TCACCAAGTTATATGCCACATGATATT 59.056 33.333 0.00 0.00 0.00 1.28
5774 7221 7.460910 TCACCAAGTTATATGCCACATGATAT 58.539 34.615 0.00 0.00 0.00 1.63
5775 7222 6.836242 TCACCAAGTTATATGCCACATGATA 58.164 36.000 0.00 0.00 0.00 2.15
5776 7223 5.693961 TCACCAAGTTATATGCCACATGAT 58.306 37.500 0.00 0.00 0.00 2.45
5777 7224 5.109500 TCACCAAGTTATATGCCACATGA 57.891 39.130 0.00 0.00 0.00 3.07
5778 7225 4.276678 CCTCACCAAGTTATATGCCACATG 59.723 45.833 0.00 0.00 0.00 3.21
5779 7226 4.079787 ACCTCACCAAGTTATATGCCACAT 60.080 41.667 0.00 0.00 0.00 3.21
5780 7227 3.265737 ACCTCACCAAGTTATATGCCACA 59.734 43.478 0.00 0.00 0.00 4.17
5781 7228 3.627577 CACCTCACCAAGTTATATGCCAC 59.372 47.826 0.00 0.00 0.00 5.01
5782 7229 3.521531 TCACCTCACCAAGTTATATGCCA 59.478 43.478 0.00 0.00 0.00 4.92
5783 7230 4.130118 CTCACCTCACCAAGTTATATGCC 58.870 47.826 0.00 0.00 0.00 4.40
5784 7231 5.023533 TCTCACCTCACCAAGTTATATGC 57.976 43.478 0.00 0.00 0.00 3.14
5785 7232 6.422100 CGATTCTCACCTCACCAAGTTATATG 59.578 42.308 0.00 0.00 0.00 1.78
5786 7233 6.323996 TCGATTCTCACCTCACCAAGTTATAT 59.676 38.462 0.00 0.00 0.00 0.86
5787 7234 5.655090 TCGATTCTCACCTCACCAAGTTATA 59.345 40.000 0.00 0.00 0.00 0.98
5909 7356 6.692681 CGTCGAAATCATGCTCCAAATTATTT 59.307 34.615 0.00 0.00 0.00 1.40
5910 7357 6.201517 CGTCGAAATCATGCTCCAAATTATT 58.798 36.000 0.00 0.00 0.00 1.40
5911 7358 5.277974 CCGTCGAAATCATGCTCCAAATTAT 60.278 40.000 0.00 0.00 0.00 1.28
5912 7359 4.035091 CCGTCGAAATCATGCTCCAAATTA 59.965 41.667 0.00 0.00 0.00 1.40
5913 7360 3.181497 CCGTCGAAATCATGCTCCAAATT 60.181 43.478 0.00 0.00 0.00 1.82
5914 7361 2.355756 CCGTCGAAATCATGCTCCAAAT 59.644 45.455 0.00 0.00 0.00 2.32
5925 7372 2.400399 TGACAACACTCCGTCGAAATC 58.600 47.619 0.00 0.00 34.78 2.17
5965 7412 8.599055 TTCATCTGAACATAGTCAGCATAATC 57.401 34.615 0.00 0.00 44.01 1.75
5971 7418 4.574013 CCCTTTCATCTGAACATAGTCAGC 59.426 45.833 0.00 0.00 44.01 4.26
6090 7537 9.219603 GTTTATATGCTACTAGATCAAATGGCA 57.780 33.333 0.00 0.00 0.00 4.92
6136 7583 7.014615 ACCTGATAGCAAGAAAATGTTCAGTTT 59.985 33.333 0.00 0.00 36.09 2.66
6321 7768 8.181487 AGACACAATAACGACACATGTAATAC 57.819 34.615 0.00 0.00 0.00 1.89
6370 7935 1.814394 GCCTGAATGATCACAGTTGCA 59.186 47.619 11.26 0.00 32.93 4.08
6567 8132 1.220749 GAGCAAGGCCGGATACACA 59.779 57.895 5.05 0.00 0.00 3.72
6574 8139 0.811616 GATACACAGAGCAAGGCCGG 60.812 60.000 0.00 0.00 0.00 6.13
6666 8231 0.105913 ACGGAAGGGGGAAAAAGCAA 60.106 50.000 0.00 0.00 0.00 3.91
6668 8233 0.251209 AGACGGAAGGGGGAAAAAGC 60.251 55.000 0.00 0.00 0.00 3.51
6669 8234 1.886542 CAAGACGGAAGGGGGAAAAAG 59.113 52.381 0.00 0.00 0.00 2.27
6670 8235 1.495574 TCAAGACGGAAGGGGGAAAAA 59.504 47.619 0.00 0.00 0.00 1.94
6675 8240 0.839946 ATCATCAAGACGGAAGGGGG 59.160 55.000 0.00 0.00 0.00 5.40
6683 8249 6.753744 TGTTCTCAGTGATAATCATCAAGACG 59.246 38.462 0.00 0.00 42.79 4.18
6700 8266 4.098044 TCCGGTTAGCTATTCTGTTCTCAG 59.902 45.833 0.00 0.00 42.54 3.35
6757 8324 6.500041 GTTTGGACTACACAATAAAGCAACA 58.500 36.000 0.00 0.00 0.00 3.33
6775 8342 1.511318 CCCACGACAATGCGTTTGGA 61.511 55.000 8.42 0.00 43.59 3.53
6793 8551 9.561069 ACATGTTTTGTACTCTATCCATTATCC 57.439 33.333 0.00 0.00 36.57 2.59
6813 8571 4.999950 TGTTTGCAAAAACCAGAACATGTT 59.000 33.333 14.67 11.78 31.87 2.71
6833 8591 9.463443 GCTATTGTTGTTTGATTAGTTTCTGTT 57.537 29.630 0.00 0.00 0.00 3.16
6841 8599 7.042992 CCATGCATGCTATTGTTGTTTGATTAG 60.043 37.037 21.69 0.00 0.00 1.73
6846 8604 4.496360 TCCATGCATGCTATTGTTGTTTG 58.504 39.130 21.69 2.87 0.00 2.93
6881 8639 9.585099 GAACTCTAGATTTCATATAGCATCTGG 57.415 37.037 15.82 0.00 0.00 3.86
6898 8656 7.343057 TCTTGCATTATCTCCAAGAACTCTAGA 59.657 37.037 0.00 0.00 41.22 2.43
6910 8668 6.791887 TCGAATTCATCTTGCATTATCTCC 57.208 37.500 6.22 0.00 0.00 3.71
6911 8669 7.172095 CGATCGAATTCATCTTGCATTATCTC 58.828 38.462 10.26 0.00 0.00 2.75
6987 8802 5.835280 ACCCAAAGTCATATCATGGAATTCC 59.165 40.000 18.17 18.17 32.82 3.01
6988 8803 6.322201 ACACCCAAAGTCATATCATGGAATTC 59.678 38.462 0.00 0.00 32.82 2.17
6991 8806 5.191727 ACACCCAAAGTCATATCATGGAA 57.808 39.130 0.00 0.00 32.82 3.53
6998 8813 4.040461 CGGATCCTACACCCAAAGTCATAT 59.960 45.833 10.75 0.00 0.00 1.78
7023 8839 1.832883 ACAAACAAGTGGCACAGACA 58.167 45.000 21.41 0.00 41.80 3.41
7025 8841 2.166829 ACAACAAACAAGTGGCACAGA 58.833 42.857 21.41 0.00 41.80 3.41
7027 8843 2.560542 AGAACAACAAACAAGTGGCACA 59.439 40.909 21.41 0.00 0.00 4.57
7028 8844 3.230743 AGAACAACAAACAAGTGGCAC 57.769 42.857 10.29 10.29 0.00 5.01
7036 8852 5.245075 ACCTCCAAGAAAAGAACAACAAACA 59.755 36.000 0.00 0.00 0.00 2.83
7039 8855 4.770010 ACACCTCCAAGAAAAGAACAACAA 59.230 37.500 0.00 0.00 0.00 2.83
7043 8859 3.130340 GCAACACCTCCAAGAAAAGAACA 59.870 43.478 0.00 0.00 0.00 3.18
7044 8860 3.381590 AGCAACACCTCCAAGAAAAGAAC 59.618 43.478 0.00 0.00 0.00 3.01
7045 8861 3.631250 AGCAACACCTCCAAGAAAAGAA 58.369 40.909 0.00 0.00 0.00 2.52
7046 8862 3.297134 AGCAACACCTCCAAGAAAAGA 57.703 42.857 0.00 0.00 0.00 2.52
7047 8863 4.391405 AAAGCAACACCTCCAAGAAAAG 57.609 40.909 0.00 0.00 0.00 2.27
7048 8864 4.221703 TCAAAAGCAACACCTCCAAGAAAA 59.778 37.500 0.00 0.00 0.00 2.29
7049 8865 3.766591 TCAAAAGCAACACCTCCAAGAAA 59.233 39.130 0.00 0.00 0.00 2.52
7055 8871 3.490933 GGTTCTTCAAAAGCAACACCTCC 60.491 47.826 0.00 0.00 0.00 4.30
7064 8880 1.136224 CGAGAGCGGTTCTTCAAAAGC 60.136 52.381 0.00 0.00 35.87 3.51
7081 8897 5.984627 TCATGACAACACACAAATTACGAG 58.015 37.500 0.00 0.00 0.00 4.18
7083 8899 5.984627 TCTCATGACAACACACAAATTACG 58.015 37.500 0.00 0.00 0.00 3.18
7084 8900 8.721478 ACTATCTCATGACAACACACAAATTAC 58.279 33.333 0.00 0.00 0.00 1.89
7089 8905 5.469760 CCAACTATCTCATGACAACACACAA 59.530 40.000 0.00 0.00 0.00 3.33
7090 8906 4.996758 CCAACTATCTCATGACAACACACA 59.003 41.667 0.00 0.00 0.00 3.72
7098 8914 4.386867 TCGGTTCCAACTATCTCATGAC 57.613 45.455 0.00 0.00 0.00 3.06
7115 8931 3.410631 TGTACATCAACAACCATCGGT 57.589 42.857 0.00 0.00 37.65 4.69
7117 8933 5.801350 AAGATGTACATCAACAACCATCG 57.199 39.130 32.01 0.00 40.22 3.84
7170 8986 4.277423 CCTAGGCGGAGAGAAAAACAAAAA 59.723 41.667 0.00 0.00 33.16 1.94
7171 8987 3.818773 CCTAGGCGGAGAGAAAAACAAAA 59.181 43.478 0.00 0.00 33.16 2.44
7172 8988 3.408634 CCTAGGCGGAGAGAAAAACAAA 58.591 45.455 0.00 0.00 33.16 2.83
7173 8989 2.874457 GCCTAGGCGGAGAGAAAAACAA 60.874 50.000 20.16 0.00 33.16 2.83
7174 8990 1.338769 GCCTAGGCGGAGAGAAAAACA 60.339 52.381 20.16 0.00 33.16 2.83
7175 8991 1.338769 TGCCTAGGCGGAGAGAAAAAC 60.339 52.381 28.28 0.00 45.51 2.43
7202 9018 1.532007 GAGCCGAGTCATACTAGACCG 59.468 57.143 0.00 0.00 39.34 4.79
7235 9051 0.100325 CACACGCACACACAAATGGT 59.900 50.000 0.00 0.00 0.00 3.55
7237 9053 1.190249 CACACACGCACACACAAATG 58.810 50.000 0.00 0.00 0.00 2.32
7238 9054 0.808125 ACACACACGCACACACAAAT 59.192 45.000 0.00 0.00 0.00 2.32
7244 9060 2.277247 GCACACACACACGCACAC 60.277 61.111 0.00 0.00 0.00 3.82
7261 9077 4.980903 AGCCAAAACAAGCGCGCG 62.981 61.111 28.44 28.44 0.00 6.86
7263 9079 2.026014 ACAGCCAAAACAAGCGCG 59.974 55.556 0.00 0.00 0.00 6.86
7264 9080 1.226945 ACACAGCCAAAACAAGCGC 60.227 52.632 0.00 0.00 0.00 5.92
7265 9081 1.481819 GCACACAGCCAAAACAAGCG 61.482 55.000 0.00 0.00 37.23 4.68
7272 9088 2.168106 AGTTTGAATGCACACAGCCAAA 59.832 40.909 0.00 0.00 44.83 3.28
7290 9106 2.116238 ACACCCGGTATCTGCATAGTT 58.884 47.619 0.00 0.00 0.00 2.24
7300 9116 7.722285 ACAATTATAATTAGCAACACCCGGTAT 59.278 33.333 10.34 0.00 0.00 2.73
7301 9117 7.055378 ACAATTATAATTAGCAACACCCGGTA 58.945 34.615 10.34 0.00 0.00 4.02
7302 9118 5.889289 ACAATTATAATTAGCAACACCCGGT 59.111 36.000 10.34 0.00 0.00 5.28
7304 9120 8.234546 GGATACAATTATAATTAGCAACACCCG 58.765 37.037 10.34 0.00 0.00 5.28
7321 9137 9.770097 CATAATATAGCATCGAGGGATACAATT 57.230 33.333 0.00 0.58 39.74 2.32
7322 9138 9.147732 TCATAATATAGCATCGAGGGATACAAT 57.852 33.333 0.00 0.00 39.74 2.71
7323 9139 8.533569 TCATAATATAGCATCGAGGGATACAA 57.466 34.615 0.00 0.00 39.74 2.41
7324 9140 7.780271 ACTCATAATATAGCATCGAGGGATACA 59.220 37.037 0.00 0.00 39.74 2.29
7325 9141 8.172352 ACTCATAATATAGCATCGAGGGATAC 57.828 38.462 0.00 0.00 0.00 2.24
7333 9149 9.578439 TTCAGATTGACTCATAATATAGCATCG 57.422 33.333 0.00 0.00 0.00 3.84
7355 9171 3.316308 CGAATTGCCCCTTCCTTATTCAG 59.684 47.826 0.00 0.00 0.00 3.02
7356 9172 3.287222 CGAATTGCCCCTTCCTTATTCA 58.713 45.455 0.00 0.00 0.00 2.57
7357 9173 2.623416 CCGAATTGCCCCTTCCTTATTC 59.377 50.000 0.00 0.00 0.00 1.75
7358 9174 2.024369 ACCGAATTGCCCCTTCCTTATT 60.024 45.455 0.00 0.00 0.00 1.40
7359 9175 1.569072 ACCGAATTGCCCCTTCCTTAT 59.431 47.619 0.00 0.00 0.00 1.73
7360 9176 0.996583 ACCGAATTGCCCCTTCCTTA 59.003 50.000 0.00 0.00 0.00 2.69
7361 9177 0.611896 CACCGAATTGCCCCTTCCTT 60.612 55.000 0.00 0.00 0.00 3.36
7362 9178 1.000896 CACCGAATTGCCCCTTCCT 60.001 57.895 0.00 0.00 0.00 3.36
7363 9179 2.710902 GCACCGAATTGCCCCTTCC 61.711 63.158 0.00 0.00 36.42 3.46
7364 9180 2.885113 GCACCGAATTGCCCCTTC 59.115 61.111 0.00 0.00 36.42 3.46
7378 9194 2.439156 GCATCTGGACCTGGGCAC 60.439 66.667 0.00 0.00 0.00 5.01
7379 9195 2.934932 TGCATCTGGACCTGGGCA 60.935 61.111 0.00 12.35 0.00 5.36
7380 9196 2.439156 GTGCATCTGGACCTGGGC 60.439 66.667 0.00 0.00 0.00 5.36
7386 9202 2.289945 GGGATATCAGGTGCATCTGGAC 60.290 54.545 26.38 14.36 35.58 4.02
7387 9203 1.980765 GGGATATCAGGTGCATCTGGA 59.019 52.381 26.38 15.30 35.58 3.86
7388 9204 1.701292 TGGGATATCAGGTGCATCTGG 59.299 52.381 26.38 8.52 35.58 3.86
7389 9205 2.636403 TCTGGGATATCAGGTGCATCTG 59.364 50.000 21.48 21.48 35.58 2.90
7390 9206 2.636893 GTCTGGGATATCAGGTGCATCT 59.363 50.000 4.83 0.00 35.58 2.90
7391 9207 2.611473 CGTCTGGGATATCAGGTGCATC 60.611 54.545 4.83 0.00 35.58 3.91
7392 9208 1.345741 CGTCTGGGATATCAGGTGCAT 59.654 52.381 4.83 0.00 35.58 3.96
7393 9209 0.752658 CGTCTGGGATATCAGGTGCA 59.247 55.000 4.83 0.00 35.58 4.57
7394 9210 0.753262 ACGTCTGGGATATCAGGTGC 59.247 55.000 4.83 0.00 35.58 5.01
7395 9211 2.483714 CCAACGTCTGGGATATCAGGTG 60.484 54.545 4.83 0.00 42.17 4.00
7396 9212 1.762957 CCAACGTCTGGGATATCAGGT 59.237 52.381 4.83 0.00 42.17 4.00
7397 9213 2.533266 CCAACGTCTGGGATATCAGG 57.467 55.000 4.83 0.00 42.17 3.86
7407 9223 0.586319 AACGCATGAACCAACGTCTG 59.414 50.000 0.00 0.00 37.87 3.51
7408 9224 0.586319 CAACGCATGAACCAACGTCT 59.414 50.000 0.00 0.00 37.87 4.18
7409 9225 0.385473 CCAACGCATGAACCAACGTC 60.385 55.000 0.00 0.00 37.87 4.34
7410 9226 1.652012 CCAACGCATGAACCAACGT 59.348 52.632 0.00 0.00 41.16 3.99
7411 9227 1.081509 CCCAACGCATGAACCAACG 60.082 57.895 0.00 0.00 0.00 4.10
7412 9228 0.887933 ATCCCAACGCATGAACCAAC 59.112 50.000 0.00 0.00 0.00 3.77
7413 9229 0.887247 CATCCCAACGCATGAACCAA 59.113 50.000 0.00 0.00 0.00 3.67
7414 9230 1.594194 GCATCCCAACGCATGAACCA 61.594 55.000 0.00 0.00 0.00 3.67
7415 9231 1.139520 GCATCCCAACGCATGAACC 59.860 57.895 0.00 0.00 0.00 3.62
7416 9232 0.179156 CAGCATCCCAACGCATGAAC 60.179 55.000 0.00 0.00 0.00 3.18
7417 9233 1.314534 CCAGCATCCCAACGCATGAA 61.315 55.000 0.00 0.00 0.00 2.57
7418 9234 1.750018 CCAGCATCCCAACGCATGA 60.750 57.895 0.00 0.00 0.00 3.07
7419 9235 1.314534 TTCCAGCATCCCAACGCATG 61.315 55.000 0.00 0.00 0.00 4.06
7420 9236 0.611618 TTTCCAGCATCCCAACGCAT 60.612 50.000 0.00 0.00 0.00 4.73
7421 9237 0.611618 ATTTCCAGCATCCCAACGCA 60.612 50.000 0.00 0.00 0.00 5.24
7422 9238 0.532115 AATTTCCAGCATCCCAACGC 59.468 50.000 0.00 0.00 0.00 4.84
7423 9239 1.736696 GCAATTTCCAGCATCCCAACG 60.737 52.381 0.00 0.00 0.00 4.10
7424 9240 1.551883 AGCAATTTCCAGCATCCCAAC 59.448 47.619 0.00 0.00 0.00 3.77
7425 9241 1.941377 AGCAATTTCCAGCATCCCAA 58.059 45.000 0.00 0.00 0.00 4.12
7426 9242 2.025037 AGTAGCAATTTCCAGCATCCCA 60.025 45.455 0.00 0.00 0.00 4.37
7427 9243 2.360165 CAGTAGCAATTTCCAGCATCCC 59.640 50.000 0.00 0.00 0.00 3.85
7428 9244 2.223665 GCAGTAGCAATTTCCAGCATCC 60.224 50.000 0.00 0.00 41.58 3.51
7429 9245 3.075866 GCAGTAGCAATTTCCAGCATC 57.924 47.619 0.00 0.00 41.58 3.91
7443 9259 1.871345 CGCTCTGACGCTGCAGTAG 60.871 63.158 16.64 12.47 37.20 2.57
7444 9260 2.179267 CGCTCTGACGCTGCAGTA 59.821 61.111 16.64 0.00 37.20 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.