Multiple sequence alignment - TraesCS4D01G115300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G115300 chr4D 100.000 6076 0 0 1 6076 96517336 96523411 0.000000e+00 11221.0
1 TraesCS4D01G115300 chr4B 93.221 6196 220 64 2 6076 136526197 136532313 0.000000e+00 8931.0
2 TraesCS4D01G115300 chr4A 94.952 3962 129 24 2166 6076 482137624 482133683 0.000000e+00 6143.0
3 TraesCS4D01G115300 chr4A 91.891 2047 76 27 170 2169 482139676 482137673 0.000000e+00 2778.0
4 TraesCS4D01G115300 chr4A 95.954 173 6 1 1 172 482140104 482139932 4.640000e-71 279.0
5 TraesCS4D01G115300 chr5A 79.595 691 104 30 4114 4773 284694273 284694957 1.540000e-125 460.0
6 TraesCS4D01G115300 chr5A 81.562 461 54 22 983 1435 284691330 284691767 9.690000e-93 351.0
7 TraesCS4D01G115300 chr5A 79.911 448 71 12 3448 3892 284693573 284694004 1.640000e-80 311.0
8 TraesCS4D01G115300 chr5D 79.107 694 106 25 4114 4773 215877603 215878291 5.590000e-120 442.0
9 TraesCS4D01G115300 chr5D 81.481 459 58 18 983 1435 215874913 215875350 9.690000e-93 351.0
10 TraesCS4D01G115300 chr5D 79.814 431 70 11 3448 3875 215876901 215877317 1.280000e-76 298.0
11 TraesCS4D01G115300 chr5B 80.297 472 58 26 983 1446 231729288 231729732 2.110000e-84 324.0
12 TraesCS4D01G115300 chr5B 83.380 361 47 12 4114 4465 231731907 231732263 7.600000e-84 322.0
13 TraesCS4D01G115300 chr5B 80.465 430 69 10 3448 3875 231731204 231731620 1.270000e-81 315.0
14 TraesCS4D01G115300 chr2B 79.747 158 25 7 1292 1446 43676743 43676590 2.320000e-19 108.0
15 TraesCS4D01G115300 chr2A 79.747 158 25 7 1292 1446 29885556 29885403 2.320000e-19 108.0
16 TraesCS4D01G115300 chr1B 81.679 131 22 2 1292 1421 565902954 565902825 2.320000e-19 108.0
17 TraesCS4D01G115300 chr2D 80.916 131 23 2 1292 1421 27780248 27780119 1.080000e-17 102.0
18 TraesCS4D01G115300 chr7A 91.304 46 4 0 2383 2428 64131342 64131297 5.080000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G115300 chr4D 96517336 96523411 6075 False 11221.000000 11221 100.000000 1 6076 1 chr4D.!!$F1 6075
1 TraesCS4D01G115300 chr4B 136526197 136532313 6116 False 8931.000000 8931 93.221000 2 6076 1 chr4B.!!$F1 6074
2 TraesCS4D01G115300 chr4A 482133683 482140104 6421 True 3066.666667 6143 94.265667 1 6076 3 chr4A.!!$R1 6075
3 TraesCS4D01G115300 chr5A 284691330 284694957 3627 False 374.000000 460 80.356000 983 4773 3 chr5A.!!$F1 3790
4 TraesCS4D01G115300 chr5D 215874913 215878291 3378 False 363.666667 442 80.134000 983 4773 3 chr5D.!!$F1 3790
5 TraesCS4D01G115300 chr5B 231729288 231732263 2975 False 320.333333 324 81.380667 983 4465 3 chr5B.!!$F1 3482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 726 0.179936 CAGGAGGAGACCAAGGATGC 59.820 60.000 0.00 0.0 0.0 3.91 F
898 1215 0.678048 ATCCCAAGAAAGCTCGCACC 60.678 55.000 0.00 0.0 0.0 5.01 F
1465 1809 0.400213 TGTTCCTTCATCAGCCGGTT 59.600 50.000 1.90 0.0 0.0 4.44 F
2497 3520 0.657312 TGCATCGCCGCTCTTTATTG 59.343 50.000 0.00 0.0 0.0 1.90 F
2504 3527 3.998341 TCGCCGCTCTTTATTGTTTTAGT 59.002 39.130 0.00 0.0 0.0 2.24 F
3603 4667 4.176271 TGATGCAAAGACGTCTGTATGAG 58.824 43.478 20.85 2.3 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1805 2.223157 TGTTTTCGAAGCTTGTGAACCG 60.223 45.455 2.10 0.0 0.00 4.44 R
2534 3557 1.013596 TAGTGTGCCATGTAATGCGC 58.986 50.000 0.00 0.0 44.97 6.09 R
2535 3558 3.312146 TCATTAGTGTGCCATGTAATGCG 59.688 43.478 6.61 0.0 44.97 4.73 R
3603 4667 0.831307 ATACCCGAAGACCTCCTTGC 59.169 55.000 0.00 0.0 34.68 4.01 R
4084 5198 4.023878 GGCGTCAAACCAGTTAATAACACA 60.024 41.667 5.89 0.0 0.00 3.72 R
5427 6576 0.451783 CGAAAAGAATGAAGGGCGGG 59.548 55.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 449 5.749109 CGAAGTATAGTCCTAAAAGTGCTGG 59.251 44.000 0.00 0.00 0.00 4.85
208 468 2.000447 GGCAACGAAAAGCGATAGTCT 59.000 47.619 0.00 0.00 44.57 3.24
211 471 3.725010 GCAACGAAAAGCGATAGTCTTGG 60.725 47.826 0.00 0.00 44.57 3.61
275 542 6.377429 AGTCGAATGAATCAAGTACACTAGGA 59.623 38.462 0.00 0.00 0.00 2.94
276 543 6.693545 GTCGAATGAATCAAGTACACTAGGAG 59.306 42.308 0.00 0.00 0.00 3.69
427 726 0.179936 CAGGAGGAGACCAAGGATGC 59.820 60.000 0.00 0.00 0.00 3.91
466 765 7.766278 TCACATCATCATCATCATCATCATCTC 59.234 37.037 0.00 0.00 0.00 2.75
624 938 3.901222 TCTTTTCCTCATTTTTGTCCCCC 59.099 43.478 0.00 0.00 0.00 5.40
776 1090 7.013274 CCGGAGCAGAAATCAATCCTAAATTAA 59.987 37.037 0.00 0.00 0.00 1.40
853 1167 4.947147 CCACCACCACCACCACCG 62.947 72.222 0.00 0.00 0.00 4.94
894 1211 2.716217 AGGAAATCCCAAGAAAGCTCG 58.284 47.619 0.00 0.00 37.41 5.03
897 1214 1.168714 AATCCCAAGAAAGCTCGCAC 58.831 50.000 0.00 0.00 0.00 5.34
898 1215 0.678048 ATCCCAAGAAAGCTCGCACC 60.678 55.000 0.00 0.00 0.00 5.01
900 1217 0.890996 CCCAAGAAAGCTCGCACCTT 60.891 55.000 0.00 0.00 0.00 3.50
1074 1397 3.024217 GGCTCCTCCTCCTCCTCT 58.976 66.667 0.00 0.00 0.00 3.69
1127 1456 2.288778 TGCTCCAGAGAGGCACCAG 61.289 63.158 0.00 0.00 40.79 4.00
1368 1706 0.819666 GGTTCCATGGATTCCTCGGC 60.820 60.000 17.06 0.00 0.00 5.54
1461 1805 3.272574 TCTCATGTTCCTTCATCAGCC 57.727 47.619 0.00 0.00 0.00 4.85
1465 1809 0.400213 TGTTCCTTCATCAGCCGGTT 59.600 50.000 1.90 0.00 0.00 4.44
1553 1902 6.002062 CAGTTCCCACTGTTATTTCTGAAC 57.998 41.667 0.00 0.00 44.96 3.18
1557 1906 5.488341 TCCCACTGTTATTTCTGAACTAGC 58.512 41.667 0.00 0.00 0.00 3.42
1610 2139 7.393234 TGATGCTAGTACTGTTTGCCTATTTTT 59.607 33.333 5.39 0.00 0.00 1.94
1649 2178 6.059484 CGGGATAAACATATGGTACTTTGGT 58.941 40.000 7.80 0.00 0.00 3.67
2379 3402 1.791785 GCTCAGCTGTATCGCATCTTC 59.208 52.381 14.67 0.00 0.00 2.87
2497 3520 0.657312 TGCATCGCCGCTCTTTATTG 59.343 50.000 0.00 0.00 0.00 1.90
2504 3527 3.998341 TCGCCGCTCTTTATTGTTTTAGT 59.002 39.130 0.00 0.00 0.00 2.24
2656 3679 4.183865 CGCTAAGTCATGTTGGAAGATCA 58.816 43.478 0.00 0.00 0.00 2.92
3059 4111 6.553524 CAAATTTGCAATCAACAAAACTGGT 58.446 32.000 5.01 0.00 40.19 4.00
3127 4179 8.632679 AGTGTGCAAAGATCTTGAAAGAAAATA 58.367 29.630 9.17 0.00 38.77 1.40
3422 4486 8.978472 TCTACATGTAAGGTGTATTTTAGAGCT 58.022 33.333 7.06 0.00 32.13 4.09
3603 4667 4.176271 TGATGCAAAGACGTCTGTATGAG 58.824 43.478 20.85 2.30 0.00 2.90
4084 5198 4.916983 TGCTTTTCAGTGCAGTTATGTT 57.083 36.364 0.00 0.00 34.84 2.71
4505 5650 2.169832 ACTCTTGCGCACATGTAACT 57.830 45.000 11.12 0.00 0.00 2.24
4583 5728 6.609212 TCCTCAAGATGCTAATACAGAAGACT 59.391 38.462 0.00 0.00 0.00 3.24
4601 5746 7.503566 CAGAAGACTCTCAAGGATAGAGAAGAT 59.496 40.741 7.09 0.00 42.63 2.40
4800 5945 1.143183 GGCGATTCCGTAGCTTCCA 59.857 57.895 0.00 0.00 38.24 3.53
4808 5953 1.626321 TCCGTAGCTTCCATTGTCCAA 59.374 47.619 0.00 0.00 0.00 3.53
4810 5955 2.420022 CCGTAGCTTCCATTGTCCAAAG 59.580 50.000 0.00 0.00 0.00 2.77
4933 6078 1.825474 CTTACTTCCGAGCAGAGGGAA 59.175 52.381 0.00 0.00 39.92 3.97
5012 6157 0.826715 CTCCTCCAGCCGAGAAATCA 59.173 55.000 0.00 0.00 41.63 2.57
5363 6512 2.421619 CTGACCTTTCTGAAGTGAGGC 58.578 52.381 6.54 1.86 32.42 4.70
5376 6525 0.962356 GTGAGGCCTCAACCATGGTG 60.962 60.000 36.66 12.88 41.85 4.17
5427 6576 5.122082 GCATCAGATAGCTTTATTCTGCCTC 59.878 44.000 0.00 0.00 0.00 4.70
5463 6612 2.839486 TCGTTTGCTGAATCTGTCCT 57.161 45.000 0.00 0.00 0.00 3.85
5513 6668 9.470399 TTCTAACCTTTTCTACTTTGTTCCTTT 57.530 29.630 0.00 0.00 0.00 3.11
5520 6675 6.988622 TTCTACTTTGTTCCTTTTCGTTCA 57.011 33.333 0.00 0.00 0.00 3.18
5590 6745 5.818136 TTTCTGAAACAAGAACTCACTGG 57.182 39.130 0.00 0.00 35.92 4.00
5604 6759 3.703001 TCACTGGGAGAGGAATTGAAC 57.297 47.619 0.00 0.00 0.00 3.18
5605 6760 2.028112 TCACTGGGAGAGGAATTGAACG 60.028 50.000 0.00 0.00 0.00 3.95
5671 6844 0.179020 CCAGGAGCACTTGACACCAA 60.179 55.000 0.00 0.00 0.00 3.67
5676 6849 1.081242 GCACTTGACACCAATGCGG 60.081 57.895 0.00 0.00 42.50 5.69
5746 6925 5.279960 CCCATTTTCTCCCAGGGTTTTTAAG 60.280 44.000 5.01 0.00 34.75 1.85
5747 6926 5.306937 CCATTTTCTCCCAGGGTTTTTAAGT 59.693 40.000 5.01 0.00 0.00 2.24
5748 6927 6.183361 CCATTTTCTCCCAGGGTTTTTAAGTT 60.183 38.462 5.01 0.00 0.00 2.66
5749 6928 6.877668 TTTTCTCCCAGGGTTTTTAAGTTT 57.122 33.333 5.01 0.00 0.00 2.66
5750 6929 6.877668 TTTCTCCCAGGGTTTTTAAGTTTT 57.122 33.333 5.01 0.00 0.00 2.43
5751 6930 7.974730 TTTCTCCCAGGGTTTTTAAGTTTTA 57.025 32.000 5.01 0.00 0.00 1.52
5752 6931 7.974730 TTCTCCCAGGGTTTTTAAGTTTTAA 57.025 32.000 5.01 0.00 0.00 1.52
5753 6932 7.350744 TCTCCCAGGGTTTTTAAGTTTTAAC 57.649 36.000 5.01 0.00 0.00 2.01
5754 6933 6.324512 TCTCCCAGGGTTTTTAAGTTTTAACC 59.675 38.462 5.01 0.00 39.41 2.85
5755 6934 5.068855 TCCCAGGGTTTTTAAGTTTTAACCG 59.931 40.000 5.01 0.00 40.71 4.44
5838 7017 2.954318 CAGGAATGCCAACCTTATCAGG 59.046 50.000 0.00 0.00 40.90 3.86
5852 7031 4.384056 CTTATCAGGAATTCGGTGATGCT 58.616 43.478 22.95 8.42 33.05 3.79
5993 7185 3.703052 AGATGCACATTTCCATTTCCTCC 59.297 43.478 0.00 0.00 0.00 4.30
6021 7213 6.041637 CCAAGTTGCAGTAGGAGTATATACCA 59.958 42.308 9.32 0.00 0.00 3.25
6026 7218 5.010933 GCAGTAGGAGTATATACCAGCTCA 58.989 45.833 9.32 0.00 0.00 4.26
6042 7234 4.980434 CCAGCTCAACTTGTGAAATGAAAG 59.020 41.667 0.00 0.00 35.22 2.62
6046 7238 3.703556 TCAACTTGTGAAATGAAAGGCCA 59.296 39.130 5.01 0.00 31.51 5.36
6047 7239 4.161189 TCAACTTGTGAAATGAAAGGCCAA 59.839 37.500 5.01 0.00 31.51 4.52
6048 7240 4.751767 ACTTGTGAAATGAAAGGCCAAA 57.248 36.364 5.01 0.00 0.00 3.28
6049 7241 5.096443 ACTTGTGAAATGAAAGGCCAAAA 57.904 34.783 5.01 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 3.508762 GACCGTGTGTAAGTCGAATGAT 58.491 45.455 0.00 0.00 0.00 2.45
189 449 3.408150 CAAGACTATCGCTTTTCGTTGC 58.592 45.455 0.00 0.00 39.67 4.17
208 468 0.882927 CGTGCTCCCTTTTCGACCAA 60.883 55.000 0.00 0.00 0.00 3.67
211 471 0.037975 TACCGTGCTCCCTTTTCGAC 60.038 55.000 0.00 0.00 0.00 4.20
275 542 6.318900 GGCCATGAGCAAATTAACTAACTACT 59.681 38.462 0.00 0.00 46.50 2.57
276 543 6.094881 TGGCCATGAGCAAATTAACTAACTAC 59.905 38.462 0.00 0.00 46.50 2.73
604 916 2.630580 CGGGGGACAAAAATGAGGAAAA 59.369 45.455 0.00 0.00 0.00 2.29
608 920 1.890174 GCGGGGGACAAAAATGAGG 59.110 57.895 0.00 0.00 0.00 3.86
611 923 2.126110 GCGCGGGGGACAAAAATG 60.126 61.111 8.83 0.00 0.00 2.32
624 938 1.299541 ATTCTAATCTGGGTTGCGCG 58.700 50.000 0.00 0.00 0.00 6.86
662 976 3.451894 CAAATCCACAGCGGGGCC 61.452 66.667 0.00 0.00 34.36 5.80
853 1167 1.903404 CTTGTTCCTGGGTGGTGGC 60.903 63.158 0.00 0.00 37.07 5.01
1074 1397 1.271840 AATAGCGCAGGGAGGTGGAA 61.272 55.000 11.47 0.00 0.00 3.53
1368 1706 2.749044 TCGAACTCGACGGGGAGG 60.749 66.667 0.00 0.00 44.22 4.30
1461 1805 2.223157 TGTTTTCGAAGCTTGTGAACCG 60.223 45.455 2.10 0.00 0.00 4.44
1465 1809 2.618241 AGCATGTTTTCGAAGCTTGTGA 59.382 40.909 2.10 0.00 29.98 3.58
1553 1902 8.534778 GTTGAAATGTTGAAAAGTGAAAGCTAG 58.465 33.333 0.00 0.00 0.00 3.42
1610 2139 2.835580 TCCCGATTAAAACCACGACA 57.164 45.000 0.00 0.00 0.00 4.35
1649 2178 3.305539 GCACACAGAGATTGCAATTCCAA 60.306 43.478 14.33 0.00 36.22 3.53
1730 2318 8.390354 CGTTGGCCTCATATTAATATACACATG 58.610 37.037 3.32 0.00 0.00 3.21
1848 2436 6.803320 GTGCCCATCATCATAATTCATAAACG 59.197 38.462 0.00 0.00 0.00 3.60
1953 2541 3.426903 CCCATAACAGGCATGGAGG 57.573 57.895 2.31 0.00 44.95 4.30
2244 3259 6.072112 ACACTTTACAACACATGGATGTTC 57.928 37.500 0.00 0.00 40.89 3.18
2293 3316 7.330454 GTGCCAACTAAGTACTACTACCTTTTC 59.670 40.741 0.00 0.00 0.00 2.29
2374 3397 5.316987 CACTCCTACCAAACAAAGGAAGAT 58.683 41.667 0.00 0.00 38.91 2.40
2379 3402 2.863809 AGCACTCCTACCAAACAAAGG 58.136 47.619 0.00 0.00 0.00 3.11
2497 3520 5.453567 ACAAAAGGAGCATGGACTAAAAC 57.546 39.130 0.00 0.00 0.00 2.43
2504 3527 2.754552 GTGCATACAAAAGGAGCATGGA 59.245 45.455 0.00 0.00 37.56 3.41
2534 3557 1.013596 TAGTGTGCCATGTAATGCGC 58.986 50.000 0.00 0.00 44.97 6.09
2535 3558 3.312146 TCATTAGTGTGCCATGTAATGCG 59.688 43.478 6.61 0.00 44.97 4.73
2550 3573 6.008331 GTGTTCCTTAAAAGGGGTCATTAGT 58.992 40.000 8.87 0.00 46.47 2.24
2656 3679 6.127451 ACGAAATTCCCAACAGTTCTTCTTTT 60.127 34.615 0.00 0.00 0.00 2.27
2723 3746 3.627395 AATGAGCAAGGTGACGGAATA 57.373 42.857 0.00 0.00 0.00 1.75
2821 3849 7.481642 TCTGCTCTTTTTCTAGTATAACCTCG 58.518 38.462 0.00 0.00 0.00 4.63
2904 3933 8.451908 AGATTGCCTAGAAATAATAACCACAC 57.548 34.615 0.00 0.00 0.00 3.82
3127 4179 7.669722 TGTAAGCAATCCAGGAAATAGTTTTCT 59.330 33.333 0.00 0.00 40.91 2.52
3356 4420 5.880332 GTCACTTAGGTCAAGGCATATTTCA 59.120 40.000 0.00 0.00 38.70 2.69
3603 4667 0.831307 ATACCCGAAGACCTCCTTGC 59.169 55.000 0.00 0.00 34.68 4.01
4021 5113 6.038603 CAGAAATTTGTTGGACAGAAGAGTCA 59.961 38.462 0.00 0.00 40.29 3.41
4084 5198 4.023878 GGCGTCAAACCAGTTAATAACACA 60.024 41.667 5.89 0.00 0.00 3.72
4505 5650 1.003580 GTCAAAGGGTCTGCCATCTGA 59.996 52.381 0.00 0.00 36.17 3.27
4583 5728 6.098982 GGTTGGAATCTTCTCTATCCTTGAGA 59.901 42.308 0.00 0.00 38.62 3.27
4800 5945 3.753272 CGGACATCACTTCTTTGGACAAT 59.247 43.478 0.00 0.00 0.00 2.71
4808 5953 1.202582 CTCGACCGGACATCACTTCTT 59.797 52.381 9.46 0.00 0.00 2.52
4810 5955 0.802607 GCTCGACCGGACATCACTTC 60.803 60.000 9.46 0.00 0.00 3.01
4933 6078 1.826024 CTGCTATTCAGGCCTCGGT 59.174 57.895 0.00 0.00 39.15 4.69
5003 6148 2.813179 CGCGCCCCTTGATTTCTCG 61.813 63.158 0.00 0.00 0.00 4.04
5006 6151 3.102097 CTCGCGCCCCTTGATTTC 58.898 61.111 0.00 0.00 0.00 2.17
5066 6211 1.844544 GCCGGGGTTTCTACCTCCAA 61.845 60.000 2.18 0.00 42.43 3.53
5085 6230 3.175976 AACAACAAAGGCGGTCGCG 62.176 57.895 0.00 0.00 43.06 5.87
5091 6236 5.351233 TCTATTACACAACAACAAAGGCG 57.649 39.130 0.00 0.00 0.00 5.52
5363 6512 0.538057 ACAGCACACCATGGTTGAGG 60.538 55.000 16.84 6.51 36.72 3.86
5427 6576 0.451783 CGAAAAGAATGAAGGGCGGG 59.548 55.000 0.00 0.00 0.00 6.13
5501 6656 4.844267 CGATGAACGAAAAGGAACAAAGT 58.156 39.130 0.00 0.00 45.77 2.66
5520 6675 4.494091 AAGAGTTGATGGTGGATTCGAT 57.506 40.909 0.00 0.00 0.00 3.59
5570 6725 3.454447 TCCCAGTGAGTTCTTGTTTCAGA 59.546 43.478 0.00 0.00 0.00 3.27
5580 6735 3.261897 TCAATTCCTCTCCCAGTGAGTTC 59.738 47.826 0.00 0.00 42.12 3.01
5590 6745 2.827652 CTAGCCGTTCAATTCCTCTCC 58.172 52.381 0.00 0.00 0.00 3.71
5602 6757 4.303257 GGCAGAAAGCTAGCCGTT 57.697 55.556 12.13 5.98 44.79 4.44
5657 6830 1.518056 CCGCATTGGTGTCAAGTGCT 61.518 55.000 0.00 0.00 36.35 4.40
5671 6844 0.036952 CTTGTCACTGAGGACCGCAT 60.037 55.000 0.00 0.00 36.97 4.73
5676 6849 2.072298 GATGCACTTGTCACTGAGGAC 58.928 52.381 0.00 0.00 38.29 3.85
5802 6981 5.105392 GGCATTCCTGTTGGTGAATGAATTA 60.105 40.000 14.51 0.00 46.89 1.40
5838 7017 1.230324 GCCCTAGCATCACCGAATTC 58.770 55.000 0.00 0.00 39.53 2.17
5852 7031 4.524802 ATTTGATGGTGATCTTGCCCTA 57.475 40.909 0.00 0.00 0.00 3.53
5910 7096 1.466856 TGTGATGGAAATCTGCAGGC 58.533 50.000 15.13 1.00 0.00 4.85
5993 7185 1.625818 ACTCCTACTGCAACTTGGGAG 59.374 52.381 16.29 16.29 43.99 4.30
6021 7213 4.500375 GCCTTTCATTTCACAAGTTGAGCT 60.500 41.667 10.54 0.00 34.94 4.09
6026 7218 4.751767 TTGGCCTTTCATTTCACAAGTT 57.248 36.364 3.32 0.00 0.00 2.66
6042 7234 5.871465 TGTTTCTTGTTTTTCTTTTGGCC 57.129 34.783 0.00 0.00 0.00 5.36
6046 7238 9.605955 CGGAAATTTGTTTCTTGTTTTTCTTTT 57.394 25.926 0.00 0.00 0.00 2.27
6047 7239 8.994170 TCGGAAATTTGTTTCTTGTTTTTCTTT 58.006 25.926 0.00 0.00 0.00 2.52
6048 7240 8.541133 TCGGAAATTTGTTTCTTGTTTTTCTT 57.459 26.923 0.00 0.00 0.00 2.52
6049 7241 8.541133 TTCGGAAATTTGTTTCTTGTTTTTCT 57.459 26.923 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.