Multiple sequence alignment - TraesCS4D01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G114700 chr4D 100.000 4682 0 0 1 4682 95529584 95534265 0 8647
1 TraesCS4D01G114700 chr4D 90.454 639 51 10 1 631 48052883 48053519 0 833
2 TraesCS4D01G114700 chr4B 92.819 3788 153 46 756 4480 135092212 135095943 0 5378
3 TraesCS4D01G114700 chr4A 92.643 3697 185 32 756 4414 484237219 484233572 0 5240
4 TraesCS4D01G114700 chrUn 91.415 629 45 8 1 623 171718748 171718123 0 854
5 TraesCS4D01G114700 chr6D 91.094 640 42 12 1 628 402412158 402412794 0 852
6 TraesCS4D01G114700 chr6D 91.167 634 42 12 1 622 147647117 147646486 0 848
7 TraesCS4D01G114700 chr2D 91.256 629 46 7 1 622 569681862 569681236 0 848
8 TraesCS4D01G114700 chr2D 90.610 639 48 9 1 631 103169852 103170486 0 837
9 TraesCS4D01G114700 chr3D 91.270 630 42 10 1 622 16013093 16012469 0 846
10 TraesCS4D01G114700 chr3D 90.938 629 44 12 1 621 13746939 13747562 0 833
11 TraesCS4D01G114700 chr7D 91.242 628 44 11 2 622 50711531 50710908 0 845


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G114700 chr4D 95529584 95534265 4681 False 8647 8647 100.000 1 4682 1 chr4D.!!$F2 4681
1 TraesCS4D01G114700 chr4D 48052883 48053519 636 False 833 833 90.454 1 631 1 chr4D.!!$F1 630
2 TraesCS4D01G114700 chr4B 135092212 135095943 3731 False 5378 5378 92.819 756 4480 1 chr4B.!!$F1 3724
3 TraesCS4D01G114700 chr4A 484233572 484237219 3647 True 5240 5240 92.643 756 4414 1 chr4A.!!$R1 3658
4 TraesCS4D01G114700 chrUn 171718123 171718748 625 True 854 854 91.415 1 623 1 chrUn.!!$R1 622
5 TraesCS4D01G114700 chr6D 402412158 402412794 636 False 852 852 91.094 1 628 1 chr6D.!!$F1 627
6 TraesCS4D01G114700 chr6D 147646486 147647117 631 True 848 848 91.167 1 622 1 chr6D.!!$R1 621
7 TraesCS4D01G114700 chr2D 569681236 569681862 626 True 848 848 91.256 1 622 1 chr2D.!!$R1 621
8 TraesCS4D01G114700 chr2D 103169852 103170486 634 False 837 837 90.610 1 631 1 chr2D.!!$F1 630
9 TraesCS4D01G114700 chr3D 16012469 16013093 624 True 846 846 91.270 1 622 1 chr3D.!!$R1 621
10 TraesCS4D01G114700 chr3D 13746939 13747562 623 False 833 833 90.938 1 621 1 chr3D.!!$F1 620
11 TraesCS4D01G114700 chr7D 50710908 50711531 623 True 845 845 91.242 2 622 1 chr7D.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 767 0.094730 GGATTTCGTCCGCAAGAACG 59.905 55.000 0.00 0.00 37.23 3.95 F
747 768 0.788391 GATTTCGTCCGCAAGAACGT 59.212 50.000 0.00 0.00 43.02 3.99 F
752 773 0.854062 CGTCCGCAAGAACGTTAACA 59.146 50.000 0.00 0.00 43.02 2.41 F
1975 2048 1.085893 CACATGCATTCGTGGCACTA 58.914 50.000 16.72 0.86 45.23 2.74 F
2780 2885 1.413445 ACTACAACTACACCGGCAACA 59.587 47.619 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2254 2328 0.248907 TCGCTCTAATACAGGCACGC 60.249 55.00 0.00 0.0 0.00 5.34 R
2743 2848 0.456221 AGTAGACCATCAAGGCGTCG 59.544 55.00 0.00 0.0 43.14 5.12 R
3022 3129 5.422666 CTGTTATTCTCACAACAGCAACA 57.577 39.13 1.90 0.0 43.57 3.33 R
3358 3466 0.608130 ATGTCCTTCAGTACGCTGCA 59.392 50.00 0.00 0.0 42.29 4.41 R
4561 4681 0.106318 TCTTACCTAGGCCTCGACCC 60.106 60.00 9.68 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 81 3.645975 ACGGTTGTGCTTTCGCGG 61.646 61.111 6.13 0.00 39.65 6.46
158 168 2.384899 GTGAGTCACGGTTTTGCTTC 57.615 50.000 7.68 0.00 0.00 3.86
325 341 0.320421 CGTGCCTCTTTCGGAAAGGA 60.320 55.000 25.66 14.00 39.01 3.36
347 364 0.382873 AAAAACGTGCTCCCGGTTTC 59.617 50.000 0.00 0.00 46.23 2.78
414 435 8.331931 ACCTATCAACATGGGATCTAGTTTTA 57.668 34.615 5.52 0.00 34.16 1.52
451 472 2.606108 GAATCCAATGGTGAAAACGGC 58.394 47.619 0.00 0.00 0.00 5.68
468 489 0.811616 GGCTCGAGATTTGGACGCAT 60.812 55.000 18.75 0.00 0.00 4.73
577 598 0.319900 CACTTGTCACGACCTGGGAG 60.320 60.000 0.00 0.00 0.00 4.30
650 671 7.875327 TTTTTAAGACATAATAGGGGAGTGC 57.125 36.000 0.00 0.00 0.00 4.40
651 672 6.569127 TTTAAGACATAATAGGGGAGTGCA 57.431 37.500 0.00 0.00 0.00 4.57
652 673 4.423625 AAGACATAATAGGGGAGTGCAC 57.576 45.455 9.40 9.40 0.00 4.57
653 674 3.384168 AGACATAATAGGGGAGTGCACA 58.616 45.455 21.04 0.00 0.00 4.57
654 675 3.976654 AGACATAATAGGGGAGTGCACAT 59.023 43.478 21.04 3.82 0.00 3.21
655 676 4.067896 GACATAATAGGGGAGTGCACATG 58.932 47.826 21.04 12.57 0.00 3.21
656 677 3.181440 ACATAATAGGGGAGTGCACATGG 60.181 47.826 21.04 0.00 0.00 3.66
657 678 0.106519 AATAGGGGAGTGCACATGGC 60.107 55.000 21.04 5.04 45.13 4.40
658 679 0.990282 ATAGGGGAGTGCACATGGCT 60.990 55.000 21.04 0.00 45.15 4.75
659 680 0.326143 TAGGGGAGTGCACATGGCTA 60.326 55.000 21.04 0.00 45.15 3.93
660 681 1.452108 GGGGAGTGCACATGGCTAC 60.452 63.158 21.04 0.00 45.15 3.58
661 682 1.452108 GGGAGTGCACATGGCTACC 60.452 63.158 21.04 3.74 45.15 3.18
662 683 1.452108 GGAGTGCACATGGCTACCC 60.452 63.158 21.04 2.99 45.15 3.69
663 684 1.452108 GAGTGCACATGGCTACCCC 60.452 63.158 21.04 0.00 45.15 4.95
664 685 1.915078 GAGTGCACATGGCTACCCCT 61.915 60.000 21.04 0.00 45.15 4.79
665 686 1.750399 GTGCACATGGCTACCCCTG 60.750 63.158 13.17 0.00 45.15 4.45
666 687 2.124151 GCACATGGCTACCCCTGG 60.124 66.667 0.00 0.00 40.25 4.45
667 688 2.124151 CACATGGCTACCCCTGGC 60.124 66.667 0.00 0.00 31.67 4.85
668 689 2.613696 ACATGGCTACCCCTGGCA 60.614 61.111 0.00 0.00 43.90 4.92
669 690 2.237965 ACATGGCTACCCCTGGCAA 61.238 57.895 0.00 0.00 43.05 4.52
670 691 1.000233 CATGGCTACCCCTGGCAAA 60.000 57.895 0.00 0.00 43.05 3.68
671 692 1.039233 CATGGCTACCCCTGGCAAAG 61.039 60.000 0.00 0.00 43.05 2.77
672 693 1.509548 ATGGCTACCCCTGGCAAAGT 61.510 55.000 0.00 0.00 43.05 2.66
673 694 1.076727 GGCTACCCCTGGCAAAGTT 59.923 57.895 0.00 0.00 0.00 2.66
674 695 0.541998 GGCTACCCCTGGCAAAGTTT 60.542 55.000 0.00 0.00 0.00 2.66
675 696 1.338107 GCTACCCCTGGCAAAGTTTT 58.662 50.000 0.00 0.00 0.00 2.43
676 697 1.691976 GCTACCCCTGGCAAAGTTTTT 59.308 47.619 0.00 0.00 0.00 1.94
677 698 2.547855 GCTACCCCTGGCAAAGTTTTTG 60.548 50.000 0.00 0.00 0.00 2.44
678 699 1.872773 ACCCCTGGCAAAGTTTTTGA 58.127 45.000 5.77 0.00 0.00 2.69
679 700 2.407562 ACCCCTGGCAAAGTTTTTGAT 58.592 42.857 5.77 0.00 0.00 2.57
680 701 2.777114 ACCCCTGGCAAAGTTTTTGATT 59.223 40.909 5.77 0.00 0.00 2.57
681 702 3.181455 ACCCCTGGCAAAGTTTTTGATTC 60.181 43.478 5.77 0.00 0.00 2.52
682 703 3.402110 CCCTGGCAAAGTTTTTGATTCC 58.598 45.455 5.77 0.00 0.00 3.01
683 704 3.402110 CCTGGCAAAGTTTTTGATTCCC 58.598 45.455 5.77 0.00 0.00 3.97
684 705 3.181456 CCTGGCAAAGTTTTTGATTCCCA 60.181 43.478 5.77 2.94 0.00 4.37
685 706 4.060205 CTGGCAAAGTTTTTGATTCCCAG 58.940 43.478 5.77 8.16 0.00 4.45
686 707 2.807967 GGCAAAGTTTTTGATTCCCAGC 59.192 45.455 5.77 0.00 0.00 4.85
687 708 2.807967 GCAAAGTTTTTGATTCCCAGCC 59.192 45.455 5.77 0.00 0.00 4.85
688 709 3.494924 GCAAAGTTTTTGATTCCCAGCCT 60.495 43.478 5.77 0.00 0.00 4.58
689 710 4.262420 GCAAAGTTTTTGATTCCCAGCCTA 60.262 41.667 5.77 0.00 0.00 3.93
690 711 5.230182 CAAAGTTTTTGATTCCCAGCCTAC 58.770 41.667 0.00 0.00 0.00 3.18
691 712 3.081804 AGTTTTTGATTCCCAGCCTACG 58.918 45.455 0.00 0.00 0.00 3.51
692 713 2.817844 GTTTTTGATTCCCAGCCTACGT 59.182 45.455 0.00 0.00 0.00 3.57
693 714 2.396590 TTTGATTCCCAGCCTACGTC 57.603 50.000 0.00 0.00 0.00 4.34
694 715 1.568504 TTGATTCCCAGCCTACGTCT 58.431 50.000 0.00 0.00 0.00 4.18
695 716 1.112113 TGATTCCCAGCCTACGTCTC 58.888 55.000 0.00 0.00 0.00 3.36
696 717 1.342076 TGATTCCCAGCCTACGTCTCT 60.342 52.381 0.00 0.00 0.00 3.10
697 718 1.757699 GATTCCCAGCCTACGTCTCTT 59.242 52.381 0.00 0.00 0.00 2.85
698 719 1.640917 TTCCCAGCCTACGTCTCTTT 58.359 50.000 0.00 0.00 0.00 2.52
699 720 1.183549 TCCCAGCCTACGTCTCTTTC 58.816 55.000 0.00 0.00 0.00 2.62
700 721 0.179134 CCCAGCCTACGTCTCTTTCG 60.179 60.000 0.00 0.00 0.00 3.46
701 722 0.179134 CCAGCCTACGTCTCTTTCGG 60.179 60.000 0.00 0.00 0.00 4.30
702 723 0.809385 CAGCCTACGTCTCTTTCGGA 59.191 55.000 0.00 0.00 0.00 4.55
703 724 1.096416 AGCCTACGTCTCTTTCGGAG 58.904 55.000 0.00 0.00 43.12 4.63
711 732 3.320884 CTCTTTCGGAGAGCTGACG 57.679 57.895 0.00 0.00 45.05 4.35
712 733 0.523966 CTCTTTCGGAGAGCTGACGT 59.476 55.000 0.00 0.00 45.05 4.34
713 734 0.241213 TCTTTCGGAGAGCTGACGTG 59.759 55.000 0.00 0.00 38.43 4.49
714 735 0.734253 CTTTCGGAGAGCTGACGTGG 60.734 60.000 0.00 0.00 38.43 4.94
715 736 2.765250 TTTCGGAGAGCTGACGTGGC 62.765 60.000 0.00 0.00 38.43 5.01
717 738 4.057428 GGAGAGCTGACGTGGCGT 62.057 66.667 0.00 0.00 45.10 5.68
718 739 2.049063 GAGAGCTGACGTGGCGTT 60.049 61.111 0.00 0.00 41.37 4.84
719 740 2.356313 AGAGCTGACGTGGCGTTG 60.356 61.111 0.00 0.00 41.37 4.10
720 741 3.414700 GAGCTGACGTGGCGTTGG 61.415 66.667 0.00 0.00 41.37 3.77
721 742 3.858868 GAGCTGACGTGGCGTTGGA 62.859 63.158 0.00 0.00 41.37 3.53
722 743 2.742372 GCTGACGTGGCGTTGGAT 60.742 61.111 0.00 0.00 41.37 3.41
723 744 2.325082 GCTGACGTGGCGTTGGATT 61.325 57.895 0.00 0.00 41.37 3.01
724 745 1.852067 GCTGACGTGGCGTTGGATTT 61.852 55.000 0.00 0.00 41.37 2.17
725 746 0.165944 CTGACGTGGCGTTGGATTTC 59.834 55.000 0.00 0.00 41.37 2.17
726 747 1.231958 TGACGTGGCGTTGGATTTCC 61.232 55.000 0.00 0.00 41.37 3.13
727 748 2.235536 GACGTGGCGTTGGATTTCCG 62.236 60.000 0.00 0.00 41.37 4.30
728 749 2.874751 GTGGCGTTGGATTTCCGG 59.125 61.111 0.00 0.00 39.43 5.14
729 750 1.673009 GTGGCGTTGGATTTCCGGA 60.673 57.895 0.00 0.00 39.43 5.14
730 751 1.029947 GTGGCGTTGGATTTCCGGAT 61.030 55.000 4.15 0.00 39.43 4.18
731 752 0.322997 TGGCGTTGGATTTCCGGATT 60.323 50.000 4.15 0.00 39.43 3.01
732 753 0.815095 GGCGTTGGATTTCCGGATTT 59.185 50.000 4.15 0.00 39.43 2.17
733 754 1.202256 GGCGTTGGATTTCCGGATTTC 60.202 52.381 4.15 5.17 39.43 2.17
734 755 1.531058 GCGTTGGATTTCCGGATTTCG 60.531 52.381 4.15 5.21 39.43 3.46
735 756 1.735571 CGTTGGATTTCCGGATTTCGT 59.264 47.619 4.15 0.00 39.43 3.85
736 757 2.222953 CGTTGGATTTCCGGATTTCGTC 60.223 50.000 4.15 0.00 39.43 4.20
737 758 2.032680 TGGATTTCCGGATTTCGTCC 57.967 50.000 4.15 9.43 44.10 4.79
745 766 3.969795 GGATTTCGTCCGCAAGAAC 57.030 52.632 0.00 0.00 37.23 3.01
746 767 0.094730 GGATTTCGTCCGCAAGAACG 59.905 55.000 0.00 0.00 37.23 3.95
747 768 0.788391 GATTTCGTCCGCAAGAACGT 59.212 50.000 0.00 0.00 43.02 3.99
748 769 1.193874 GATTTCGTCCGCAAGAACGTT 59.806 47.619 0.00 0.00 43.02 3.99
749 770 1.850377 TTTCGTCCGCAAGAACGTTA 58.150 45.000 0.00 0.00 43.02 3.18
750 771 1.850377 TTCGTCCGCAAGAACGTTAA 58.150 45.000 0.00 0.00 43.02 2.01
751 772 1.130955 TCGTCCGCAAGAACGTTAAC 58.869 50.000 0.00 0.00 43.02 2.01
752 773 0.854062 CGTCCGCAAGAACGTTAACA 59.146 50.000 0.00 0.00 43.02 2.41
753 774 1.136721 CGTCCGCAAGAACGTTAACAG 60.137 52.381 0.00 1.29 43.02 3.16
754 775 2.129607 GTCCGCAAGAACGTTAACAGA 58.870 47.619 0.00 0.00 43.02 3.41
798 819 7.702772 CAGAAAACATTGTCTACGTCTATAGCT 59.297 37.037 0.00 0.00 0.00 3.32
881 919 7.542130 GGTTATAGCTGAGTTTGTTGGAAATTG 59.458 37.037 0.00 0.00 0.00 2.32
893 931 6.155475 TGTTGGAAATTGGTTACTCTTTGG 57.845 37.500 0.00 0.00 0.00 3.28
897 935 5.480073 TGGAAATTGGTTACTCTTTGGATGG 59.520 40.000 0.00 0.00 0.00 3.51
914 952 7.624360 TTGGATGGTTGTGATACTATTTGTC 57.376 36.000 0.00 0.00 0.00 3.18
926 964 9.639601 GTGATACTATTTGTCAATCGATCCATA 57.360 33.333 0.00 0.00 0.00 2.74
927 965 9.860898 TGATACTATTTGTCAATCGATCCATAG 57.139 33.333 0.00 1.79 0.00 2.23
1173 1214 2.108976 CCGGCGATGGTGCAGTAT 59.891 61.111 9.30 0.00 36.28 2.12
1420 1461 3.317430 GGTAAATCCTACATCCGTCGACT 59.683 47.826 14.70 0.00 0.00 4.18
1422 1463 5.009010 GGTAAATCCTACATCCGTCGACTTA 59.991 44.000 14.70 1.17 0.00 2.24
1458 1510 5.604231 TGGGAGTATAAGATTGAGATGCTGT 59.396 40.000 0.00 0.00 0.00 4.40
1466 1518 1.830587 TTGAGATGCTGTGTCCCGCT 61.831 55.000 0.00 0.00 0.00 5.52
1838 1910 2.227149 ACCGTTATTTTCGCAAAGACCC 59.773 45.455 0.00 0.00 0.00 4.46
1868 1940 8.441312 TTTTTCTTTAGTTGTTGTACCTCGAT 57.559 30.769 0.00 0.00 0.00 3.59
1888 1960 7.011763 CCTCGATAATATTTGATCGCATCCATT 59.988 37.037 13.46 0.00 43.63 3.16
1889 1961 8.940768 TCGATAATATTTGATCGCATCCATTA 57.059 30.769 13.46 0.00 43.63 1.90
1891 1963 8.278408 CGATAATATTTGATCGCATCCATTAGG 58.722 37.037 7.49 0.00 38.60 2.69
1932 2005 3.562973 GTGTCAATGATCGCCTCATGATT 59.437 43.478 0.00 0.00 44.03 2.57
1933 2006 4.036027 GTGTCAATGATCGCCTCATGATTT 59.964 41.667 0.00 0.00 44.03 2.17
1934 2007 5.237127 GTGTCAATGATCGCCTCATGATTTA 59.763 40.000 0.00 0.00 44.03 1.40
1935 2008 5.999600 TGTCAATGATCGCCTCATGATTTAT 59.000 36.000 0.00 0.00 44.03 1.40
1936 2009 6.487668 TGTCAATGATCGCCTCATGATTTATT 59.512 34.615 0.00 0.00 44.03 1.40
1937 2010 7.013559 TGTCAATGATCGCCTCATGATTTATTT 59.986 33.333 0.00 0.00 44.03 1.40
1938 2011 7.864379 GTCAATGATCGCCTCATGATTTATTTT 59.136 33.333 0.00 0.00 44.03 1.82
1975 2048 1.085893 CACATGCATTCGTGGCACTA 58.914 50.000 16.72 0.86 45.23 2.74
1989 2062 3.627577 GTGGCACTAAACTGTATGGATGG 59.372 47.826 11.13 0.00 0.00 3.51
2034 2107 1.735559 GAAGTACCCGCACGTGGTC 60.736 63.158 18.88 0.00 37.31 4.02
2040 2113 4.101790 CCGCACGTGGTCATTGGC 62.102 66.667 18.88 0.00 0.00 4.52
2124 2197 4.253685 ACGACATCATCTCCAACGATTTT 58.746 39.130 0.00 0.00 0.00 1.82
2128 2201 6.510157 CGACATCATCTCCAACGATTTTAAGG 60.510 42.308 0.00 0.00 0.00 2.69
2129 2202 6.180472 ACATCATCTCCAACGATTTTAAGGT 58.820 36.000 0.00 0.00 0.00 3.50
2130 2203 7.335627 ACATCATCTCCAACGATTTTAAGGTA 58.664 34.615 0.00 0.00 0.00 3.08
2131 2204 7.280205 ACATCATCTCCAACGATTTTAAGGTAC 59.720 37.037 0.00 0.00 0.00 3.34
2193 2266 9.915629 AGTTCAGGATCGATATATTTACAGTTC 57.084 33.333 0.00 0.00 0.00 3.01
2206 2280 6.919775 ATTTACAGTTCTGACTCTGGTAGT 57.080 37.500 6.83 0.00 42.80 2.73
2209 2283 1.896465 AGTTCTGACTCTGGTAGTGCC 59.104 52.381 0.00 0.00 39.07 5.01
2256 2330 9.702494 ACATTATATATGTATGATCATCCTGCG 57.298 33.333 12.53 0.00 0.00 5.18
2416 2494 2.095263 GCATGCTCTCCTAGAGACGATC 60.095 54.545 11.37 0.00 45.07 3.69
2424 2502 6.645688 CTCTCCTAGAGACGATCATCATCGG 61.646 52.000 3.44 0.00 44.92 4.18
2464 2552 7.965107 CGATCGATTGATGAATCTATCTGTACA 59.035 37.037 10.26 0.00 38.08 2.90
2465 2553 9.800433 GATCGATTGATGAATCTATCTGTACAT 57.200 33.333 10.79 0.00 37.61 2.29
2667 2772 3.168193 GCGTACGTTTTGGATTGATTGG 58.832 45.455 17.90 0.00 0.00 3.16
2669 2774 4.142859 GCGTACGTTTTGGATTGATTGGTA 60.143 41.667 17.90 0.00 0.00 3.25
2780 2885 1.413445 ACTACAACTACACCGGCAACA 59.587 47.619 0.00 0.00 0.00 3.33
3012 3117 5.882557 AGTTCGGAGGATTCGTAAGTACTAA 59.117 40.000 0.00 0.00 39.02 2.24
3193 3300 8.030692 CAGGATATTGCAAATGTTTTGAAGAGA 58.969 33.333 1.71 0.00 0.00 3.10
3333 3441 1.478105 GCCCCATGTTAAAGCCTTGAG 59.522 52.381 0.00 0.00 0.00 3.02
3467 3575 6.429385 GTCTTCATTTTCTCATGGAGTGAACT 59.571 38.462 0.00 0.00 36.14 3.01
3685 3801 3.844211 TGAAGCCATAAAGTCCTAGGTGT 59.156 43.478 9.08 0.00 0.00 4.16
3851 3967 8.934023 ATTGGAATAACAAGAGGAACTTACAA 57.066 30.769 0.00 0.00 37.03 2.41
3885 4001 2.698274 TCTGTGTATGCGTATGTCCCAT 59.302 45.455 0.00 0.00 0.00 4.00
3898 4014 2.187100 TGTCCCATGTGATGAGCTACA 58.813 47.619 0.00 0.00 0.00 2.74
3976 4094 2.885135 TGACATGCTGGAGAACCAAT 57.115 45.000 0.00 0.00 46.32 3.16
4010 4129 3.309600 TTAGGAGGCAGTAGTACCCTC 57.690 52.381 14.23 14.23 43.48 4.30
4011 4130 0.106619 AGGAGGCAGTAGTACCCTCG 60.107 60.000 15.45 0.00 44.81 4.63
4012 4131 0.106819 GGAGGCAGTAGTACCCTCGA 60.107 60.000 15.45 0.00 44.81 4.04
4013 4132 1.023502 GAGGCAGTAGTACCCTCGAC 58.976 60.000 9.14 0.00 36.17 4.20
4051 4170 2.922740 ACTCCAGGTTTGACGCTTTA 57.077 45.000 0.00 0.00 0.00 1.85
4071 4190 3.538634 AGTGTCTTATAAAGGCGGGAC 57.461 47.619 0.00 0.00 35.37 4.46
4122 4241 5.281727 GTTGATAGCGATGTGTCTGTCATA 58.718 41.667 0.00 0.00 32.00 2.15
4147 4266 2.802787 ATCAATCTTAGGACTCGCCG 57.197 50.000 0.00 0.00 43.43 6.46
4173 4292 3.751175 CGGTTTTTCTGAGGTGCTCATAA 59.249 43.478 0.00 0.00 39.92 1.90
4203 4323 2.221055 GTGCGTTCAACGAGATGAGTTT 59.779 45.455 15.79 0.00 46.05 2.66
4266 4386 2.395360 GCACCGCGGCTCATTGTTA 61.395 57.895 28.58 0.00 0.00 2.41
4293 4413 1.034838 CAGGCGAGCCAGAGTAGACT 61.035 60.000 17.18 0.00 38.92 3.24
4343 4463 3.655777 TCCCTTCCTTGGTGATGTACTTT 59.344 43.478 0.00 0.00 0.00 2.66
4434 4554 3.499918 GGTACATGCATTCATAGAGGTGC 59.500 47.826 0.00 0.00 38.05 5.01
4437 4557 3.181466 ACATGCATTCATAGAGGTGCGTA 60.181 43.478 0.00 0.00 40.34 4.42
4438 4558 3.751479 TGCATTCATAGAGGTGCGTAT 57.249 42.857 0.00 0.00 40.34 3.06
4523 4643 2.801077 AATGCTACCTACAACCCACC 57.199 50.000 0.00 0.00 0.00 4.61
4524 4644 1.663911 ATGCTACCTACAACCCACCA 58.336 50.000 0.00 0.00 0.00 4.17
4525 4645 1.436326 TGCTACCTACAACCCACCAA 58.564 50.000 0.00 0.00 0.00 3.67
4526 4646 1.989586 TGCTACCTACAACCCACCAAT 59.010 47.619 0.00 0.00 0.00 3.16
4527 4647 2.290641 TGCTACCTACAACCCACCAATG 60.291 50.000 0.00 0.00 0.00 2.82
4528 4648 2.365582 CTACCTACAACCCACCAATGC 58.634 52.381 0.00 0.00 0.00 3.56
4529 4649 0.777446 ACCTACAACCCACCAATGCT 59.223 50.000 0.00 0.00 0.00 3.79
4530 4650 1.989586 ACCTACAACCCACCAATGCTA 59.010 47.619 0.00 0.00 0.00 3.49
4531 4651 2.580783 ACCTACAACCCACCAATGCTAT 59.419 45.455 0.00 0.00 0.00 2.97
4532 4652 2.951642 CCTACAACCCACCAATGCTATG 59.048 50.000 0.00 0.00 0.00 2.23
4533 4653 2.603075 ACAACCCACCAATGCTATGT 57.397 45.000 0.00 0.00 0.00 2.29
4534 4654 2.170166 ACAACCCACCAATGCTATGTG 58.830 47.619 0.00 0.00 0.00 3.21
4535 4655 2.170166 CAACCCACCAATGCTATGTGT 58.830 47.619 0.00 0.00 0.00 3.72
4536 4656 2.562298 CAACCCACCAATGCTATGTGTT 59.438 45.455 0.00 0.00 0.00 3.32
4537 4657 2.170166 ACCCACCAATGCTATGTGTTG 58.830 47.619 0.00 0.00 0.00 3.33
4538 4658 1.135024 CCCACCAATGCTATGTGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
4539 4659 1.820519 CCACCAATGCTATGTGTTGCT 59.179 47.619 0.00 0.00 0.00 3.91
4540 4660 2.159338 CCACCAATGCTATGTGTTGCTC 60.159 50.000 0.00 0.00 0.00 4.26
4541 4661 2.488937 CACCAATGCTATGTGTTGCTCA 59.511 45.455 0.00 0.00 0.00 4.26
4542 4662 3.129813 CACCAATGCTATGTGTTGCTCAT 59.870 43.478 0.00 0.00 0.00 2.90
4543 4663 3.765511 ACCAATGCTATGTGTTGCTCATT 59.234 39.130 0.00 0.00 0.00 2.57
4544 4664 4.949238 ACCAATGCTATGTGTTGCTCATTA 59.051 37.500 0.00 0.00 0.00 1.90
4545 4665 5.066893 ACCAATGCTATGTGTTGCTCATTAG 59.933 40.000 0.00 0.00 0.00 1.73
4546 4666 5.506815 CCAATGCTATGTGTTGCTCATTAGG 60.507 44.000 0.00 0.00 0.00 2.69
4547 4667 4.486125 TGCTATGTGTTGCTCATTAGGA 57.514 40.909 0.00 0.00 0.00 2.94
4548 4668 4.445453 TGCTATGTGTTGCTCATTAGGAG 58.555 43.478 0.00 0.00 46.93 3.69
4559 4679 3.963665 CTCATTAGGAGCGAGTCAGAAG 58.036 50.000 0.00 0.00 36.69 2.85
4560 4680 3.357203 TCATTAGGAGCGAGTCAGAAGT 58.643 45.455 0.00 0.00 0.00 3.01
4561 4681 3.129462 TCATTAGGAGCGAGTCAGAAGTG 59.871 47.826 0.00 0.00 0.00 3.16
4562 4682 1.464734 TAGGAGCGAGTCAGAAGTGG 58.535 55.000 0.00 0.00 0.00 4.00
4563 4683 1.216710 GGAGCGAGTCAGAAGTGGG 59.783 63.158 0.00 0.00 0.00 4.61
4564 4684 1.536943 GGAGCGAGTCAGAAGTGGGT 61.537 60.000 0.00 0.00 0.00 4.51
4565 4685 0.109039 GAGCGAGTCAGAAGTGGGTC 60.109 60.000 0.00 0.00 0.00 4.46
4566 4686 1.444553 GCGAGTCAGAAGTGGGTCG 60.445 63.158 0.00 0.00 34.30 4.79
4567 4687 1.863662 GCGAGTCAGAAGTGGGTCGA 61.864 60.000 0.00 0.00 33.49 4.20
4568 4688 0.169230 CGAGTCAGAAGTGGGTCGAG 59.831 60.000 0.00 0.00 33.49 4.04
4569 4689 0.528470 GAGTCAGAAGTGGGTCGAGG 59.472 60.000 0.00 0.00 0.00 4.63
4570 4690 1.079750 GTCAGAAGTGGGTCGAGGC 60.080 63.158 0.00 0.00 0.00 4.70
4571 4691 2.266055 CAGAAGTGGGTCGAGGCC 59.734 66.667 0.00 0.00 0.00 5.19
4572 4692 2.120718 AGAAGTGGGTCGAGGCCT 59.879 61.111 3.86 3.86 0.00 5.19
4573 4693 0.970937 CAGAAGTGGGTCGAGGCCTA 60.971 60.000 4.42 0.00 0.00 3.93
4574 4694 0.684805 AGAAGTGGGTCGAGGCCTAG 60.685 60.000 4.42 5.63 0.00 3.02
4575 4695 1.677637 GAAGTGGGTCGAGGCCTAGG 61.678 65.000 4.42 3.67 0.00 3.02
4576 4696 2.363925 GTGGGTCGAGGCCTAGGT 60.364 66.667 4.42 0.00 0.00 3.08
4577 4697 1.076485 GTGGGTCGAGGCCTAGGTA 60.076 63.158 4.42 0.00 0.00 3.08
4578 4698 0.685458 GTGGGTCGAGGCCTAGGTAA 60.685 60.000 4.42 0.00 0.00 2.85
4579 4699 0.396695 TGGGTCGAGGCCTAGGTAAG 60.397 60.000 4.42 0.00 0.00 2.34
4580 4700 0.106318 GGGTCGAGGCCTAGGTAAGA 60.106 60.000 4.42 2.52 0.00 2.10
4581 4701 1.320507 GGTCGAGGCCTAGGTAAGAG 58.679 60.000 4.42 0.00 0.00 2.85
4582 4702 1.320507 GTCGAGGCCTAGGTAAGAGG 58.679 60.000 4.42 0.00 37.12 3.69
4590 4710 3.760580 CCTAGGTAAGAGGCAATCTGG 57.239 52.381 0.00 0.00 38.67 3.86
4591 4711 2.370189 CCTAGGTAAGAGGCAATCTGGG 59.630 54.545 0.00 0.00 38.67 4.45
4592 4712 2.270434 AGGTAAGAGGCAATCTGGGA 57.730 50.000 0.00 0.00 38.67 4.37
4593 4713 2.562296 AGGTAAGAGGCAATCTGGGAA 58.438 47.619 0.00 0.00 38.67 3.97
4594 4714 2.507471 AGGTAAGAGGCAATCTGGGAAG 59.493 50.000 0.00 0.00 38.67 3.46
4595 4715 2.422093 GGTAAGAGGCAATCTGGGAAGG 60.422 54.545 0.00 0.00 38.67 3.46
4596 4716 1.376649 AAGAGGCAATCTGGGAAGGT 58.623 50.000 0.00 0.00 38.67 3.50
4597 4717 1.376649 AGAGGCAATCTGGGAAGGTT 58.623 50.000 0.00 0.00 36.69 3.50
4598 4718 1.713078 AGAGGCAATCTGGGAAGGTTT 59.287 47.619 0.00 0.00 36.69 3.27
4599 4719 2.110721 AGAGGCAATCTGGGAAGGTTTT 59.889 45.455 0.00 0.00 36.69 2.43
4600 4720 2.493675 GAGGCAATCTGGGAAGGTTTTC 59.506 50.000 0.00 0.00 0.00 2.29
4601 4721 2.158325 AGGCAATCTGGGAAGGTTTTCA 60.158 45.455 0.00 0.00 34.90 2.69
4602 4722 2.029020 GGCAATCTGGGAAGGTTTTCAC 60.029 50.000 0.00 0.00 37.24 3.18
4603 4723 2.029020 GCAATCTGGGAAGGTTTTCACC 60.029 50.000 0.00 0.00 44.67 4.02
4633 4753 5.134202 GGAAGATTCCAATCGGTTTTTGT 57.866 39.130 6.74 0.00 46.76 2.83
4634 4754 5.538118 GGAAGATTCCAATCGGTTTTTGTT 58.462 37.500 6.74 0.00 46.76 2.83
4635 4755 5.989168 GGAAGATTCCAATCGGTTTTTGTTT 59.011 36.000 6.74 0.00 46.76 2.83
4636 4756 6.145534 GGAAGATTCCAATCGGTTTTTGTTTC 59.854 38.462 6.74 0.00 46.76 2.78
4637 4757 6.405278 AGATTCCAATCGGTTTTTGTTTCT 57.595 33.333 0.00 0.00 40.35 2.52
4638 4758 6.816136 AGATTCCAATCGGTTTTTGTTTCTT 58.184 32.000 0.00 0.00 40.35 2.52
4639 4759 7.272244 AGATTCCAATCGGTTTTTGTTTCTTT 58.728 30.769 0.00 0.00 40.35 2.52
4640 4760 7.768582 AGATTCCAATCGGTTTTTGTTTCTTTT 59.231 29.630 0.00 0.00 40.35 2.27
4641 4761 6.895607 TCCAATCGGTTTTTGTTTCTTTTC 57.104 33.333 0.00 0.00 0.00 2.29
4642 4762 6.635755 TCCAATCGGTTTTTGTTTCTTTTCT 58.364 32.000 0.00 0.00 0.00 2.52
4643 4763 6.754675 TCCAATCGGTTTTTGTTTCTTTTCTC 59.245 34.615 0.00 0.00 0.00 2.87
4644 4764 6.756542 CCAATCGGTTTTTGTTTCTTTTCTCT 59.243 34.615 0.00 0.00 0.00 3.10
4645 4765 7.254084 CCAATCGGTTTTTGTTTCTTTTCTCTG 60.254 37.037 0.00 0.00 0.00 3.35
4646 4766 6.262193 TCGGTTTTTGTTTCTTTTCTCTGT 57.738 33.333 0.00 0.00 0.00 3.41
4647 4767 6.683715 TCGGTTTTTGTTTCTTTTCTCTGTT 58.316 32.000 0.00 0.00 0.00 3.16
4648 4768 7.149307 TCGGTTTTTGTTTCTTTTCTCTGTTT 58.851 30.769 0.00 0.00 0.00 2.83
4649 4769 8.298140 TCGGTTTTTGTTTCTTTTCTCTGTTTA 58.702 29.630 0.00 0.00 0.00 2.01
4650 4770 9.083080 CGGTTTTTGTTTCTTTTCTCTGTTTAT 57.917 29.630 0.00 0.00 0.00 1.40
4657 4777 9.364989 TGTTTCTTTTCTCTGTTTATTTGTTGG 57.635 29.630 0.00 0.00 0.00 3.77
4658 4778 9.366216 GTTTCTTTTCTCTGTTTATTTGTTGGT 57.634 29.630 0.00 0.00 0.00 3.67
4659 4779 9.936759 TTTCTTTTCTCTGTTTATTTGTTGGTT 57.063 25.926 0.00 0.00 0.00 3.67
4660 4780 9.936759 TTCTTTTCTCTGTTTATTTGTTGGTTT 57.063 25.926 0.00 0.00 0.00 3.27
4661 4781 9.936759 TCTTTTCTCTGTTTATTTGTTGGTTTT 57.063 25.926 0.00 0.00 0.00 2.43
4663 4783 9.936759 TTTTCTCTGTTTATTTGTTGGTTTTCT 57.063 25.926 0.00 0.00 0.00 2.52
4664 4784 8.925161 TTCTCTGTTTATTTGTTGGTTTTCTG 57.075 30.769 0.00 0.00 0.00 3.02
4665 4785 8.287439 TCTCTGTTTATTTGTTGGTTTTCTGA 57.713 30.769 0.00 0.00 0.00 3.27
4666 4786 8.744652 TCTCTGTTTATTTGTTGGTTTTCTGAA 58.255 29.630 0.00 0.00 0.00 3.02
4667 4787 8.696410 TCTGTTTATTTGTTGGTTTTCTGAAC 57.304 30.769 0.00 0.00 0.00 3.18
4668 4788 7.486551 TCTGTTTATTTGTTGGTTTTCTGAACG 59.513 33.333 0.00 0.00 0.00 3.95
4669 4789 7.091443 TGTTTATTTGTTGGTTTTCTGAACGT 58.909 30.769 0.00 0.00 0.00 3.99
4670 4790 7.599245 TGTTTATTTGTTGGTTTTCTGAACGTT 59.401 29.630 0.00 0.00 0.00 3.99
4671 4791 8.436970 GTTTATTTGTTGGTTTTCTGAACGTTT 58.563 29.630 0.46 0.00 0.00 3.60
4672 4792 8.535690 TTATTTGTTGGTTTTCTGAACGTTTT 57.464 26.923 0.46 0.00 0.00 2.43
4673 4793 6.455045 TTTGTTGGTTTTCTGAACGTTTTC 57.545 33.333 0.46 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 32 0.104304 AGCAAAACCGTGACTCTCGT 59.896 50.000 0.24 0.00 0.00 4.18
140 149 1.305201 GGAAGCAAAACCGTGACTCA 58.695 50.000 0.00 0.00 0.00 3.41
255 271 0.881118 TCTCATGGAAGCAAAACCGC 59.119 50.000 0.00 0.00 0.00 5.68
332 349 4.675029 CCGAAACCGGGAGCACGT 62.675 66.667 6.32 0.00 43.22 4.49
378 399 4.002906 TGTTGATAGGTTTTGACGAGCT 57.997 40.909 0.00 0.00 0.00 4.09
379 400 4.437390 CCATGTTGATAGGTTTTGACGAGC 60.437 45.833 0.00 0.00 0.00 5.03
380 401 4.094887 CCCATGTTGATAGGTTTTGACGAG 59.905 45.833 0.00 0.00 0.00 4.18
451 472 0.933097 CCATGCGTCCAAATCTCGAG 59.067 55.000 5.93 5.93 0.00 4.04
515 536 0.882927 TCGCAACCTGGGAGTTTTCG 60.883 55.000 0.00 0.00 34.23 3.46
577 598 2.286418 CGTTGCAAAGAACACTCCACTC 60.286 50.000 6.52 0.00 0.00 3.51
631 652 3.780294 TGTGCACTCCCCTATTATGTCTT 59.220 43.478 19.41 0.00 0.00 3.01
632 653 3.384168 TGTGCACTCCCCTATTATGTCT 58.616 45.455 19.41 0.00 0.00 3.41
633 654 3.838244 TGTGCACTCCCCTATTATGTC 57.162 47.619 19.41 0.00 0.00 3.06
634 655 3.181440 CCATGTGCACTCCCCTATTATGT 60.181 47.826 19.41 0.00 0.00 2.29
635 656 3.415212 CCATGTGCACTCCCCTATTATG 58.585 50.000 19.41 9.51 0.00 1.90
636 657 2.224867 GCCATGTGCACTCCCCTATTAT 60.225 50.000 19.41 0.00 40.77 1.28
637 658 1.142870 GCCATGTGCACTCCCCTATTA 59.857 52.381 19.41 0.00 40.77 0.98
638 659 0.106519 GCCATGTGCACTCCCCTATT 60.107 55.000 19.41 0.00 40.77 1.73
639 660 0.990282 AGCCATGTGCACTCCCCTAT 60.990 55.000 19.41 0.00 44.83 2.57
640 661 0.326143 TAGCCATGTGCACTCCCCTA 60.326 55.000 19.41 10.54 44.83 3.53
641 662 1.616327 TAGCCATGTGCACTCCCCT 60.616 57.895 19.41 11.50 44.83 4.79
642 663 1.452108 GTAGCCATGTGCACTCCCC 60.452 63.158 19.41 4.28 44.83 4.81
643 664 1.452108 GGTAGCCATGTGCACTCCC 60.452 63.158 19.41 3.90 44.83 4.30
644 665 1.452108 GGGTAGCCATGTGCACTCC 60.452 63.158 19.41 8.54 44.83 3.85
645 666 1.452108 GGGGTAGCCATGTGCACTC 60.452 63.158 19.41 4.71 44.83 3.51
646 667 1.925455 AGGGGTAGCCATGTGCACT 60.925 57.895 19.41 0.00 44.83 4.40
647 668 1.750399 CAGGGGTAGCCATGTGCAC 60.750 63.158 17.26 10.75 44.83 4.57
648 669 2.676608 CAGGGGTAGCCATGTGCA 59.323 61.111 17.26 0.00 44.83 4.57
649 670 2.124151 CCAGGGGTAGCCATGTGC 60.124 66.667 22.84 0.37 41.71 4.57
650 671 2.124151 GCCAGGGGTAGCCATGTG 60.124 66.667 22.84 15.39 0.00 3.21
651 672 1.799157 TTTGCCAGGGGTAGCCATGT 61.799 55.000 22.84 0.00 0.00 3.21
652 673 1.000233 TTTGCCAGGGGTAGCCATG 60.000 57.895 18.47 18.47 0.00 3.66
653 674 1.307647 CTTTGCCAGGGGTAGCCAT 59.692 57.895 14.06 1.68 0.00 4.40
654 675 1.725169 AACTTTGCCAGGGGTAGCCA 61.725 55.000 14.06 0.00 0.00 4.75
655 676 0.541998 AAACTTTGCCAGGGGTAGCC 60.542 55.000 1.07 1.07 0.00 3.93
656 677 1.338107 AAAACTTTGCCAGGGGTAGC 58.662 50.000 0.00 0.00 0.00 3.58
657 678 2.962421 TCAAAAACTTTGCCAGGGGTAG 59.038 45.455 0.00 0.00 0.00 3.18
658 679 3.033659 TCAAAAACTTTGCCAGGGGTA 57.966 42.857 0.00 0.00 0.00 3.69
659 680 1.872773 TCAAAAACTTTGCCAGGGGT 58.127 45.000 0.00 0.00 0.00 4.95
660 681 3.402110 GAATCAAAAACTTTGCCAGGGG 58.598 45.455 0.00 0.00 0.00 4.79
661 682 3.402110 GGAATCAAAAACTTTGCCAGGG 58.598 45.455 0.00 0.00 0.00 4.45
662 683 3.181456 TGGGAATCAAAAACTTTGCCAGG 60.181 43.478 0.00 0.00 0.00 4.45
663 684 4.060205 CTGGGAATCAAAAACTTTGCCAG 58.940 43.478 7.83 7.83 43.02 4.85
664 685 3.743899 GCTGGGAATCAAAAACTTTGCCA 60.744 43.478 0.00 0.00 0.00 4.92
665 686 2.807967 GCTGGGAATCAAAAACTTTGCC 59.192 45.455 0.00 0.00 0.00 4.52
666 687 2.807967 GGCTGGGAATCAAAAACTTTGC 59.192 45.455 0.00 0.00 0.00 3.68
667 688 4.341366 AGGCTGGGAATCAAAAACTTTG 57.659 40.909 0.00 0.00 0.00 2.77
668 689 4.022329 CGTAGGCTGGGAATCAAAAACTTT 60.022 41.667 0.00 0.00 0.00 2.66
669 690 3.506067 CGTAGGCTGGGAATCAAAAACTT 59.494 43.478 0.00 0.00 0.00 2.66
670 691 3.081804 CGTAGGCTGGGAATCAAAAACT 58.918 45.455 0.00 0.00 0.00 2.66
671 692 2.817844 ACGTAGGCTGGGAATCAAAAAC 59.182 45.455 0.00 0.00 0.00 2.43
672 693 3.078837 GACGTAGGCTGGGAATCAAAAA 58.921 45.455 0.00 0.00 0.00 1.94
673 694 2.304761 AGACGTAGGCTGGGAATCAAAA 59.695 45.455 0.00 0.00 0.00 2.44
674 695 1.906574 AGACGTAGGCTGGGAATCAAA 59.093 47.619 0.00 0.00 0.00 2.69
675 696 1.480954 GAGACGTAGGCTGGGAATCAA 59.519 52.381 0.00 0.00 0.00 2.57
676 697 1.112113 GAGACGTAGGCTGGGAATCA 58.888 55.000 0.00 0.00 0.00 2.57
677 698 1.404843 AGAGACGTAGGCTGGGAATC 58.595 55.000 0.00 0.00 0.00 2.52
678 699 1.867363 AAGAGACGTAGGCTGGGAAT 58.133 50.000 0.00 0.00 0.00 3.01
679 700 1.549170 GAAAGAGACGTAGGCTGGGAA 59.451 52.381 0.00 0.00 0.00 3.97
680 701 1.183549 GAAAGAGACGTAGGCTGGGA 58.816 55.000 0.00 0.00 0.00 4.37
681 702 0.179134 CGAAAGAGACGTAGGCTGGG 60.179 60.000 0.00 0.00 0.00 4.45
682 703 0.179134 CCGAAAGAGACGTAGGCTGG 60.179 60.000 0.00 0.00 0.00 4.85
683 704 0.809385 TCCGAAAGAGACGTAGGCTG 59.191 55.000 0.00 0.00 0.00 4.85
684 705 1.096416 CTCCGAAAGAGACGTAGGCT 58.904 55.000 0.00 0.00 46.50 4.58
685 706 3.626154 CTCCGAAAGAGACGTAGGC 57.374 57.895 0.00 0.00 46.50 3.93
694 715 0.241213 CACGTCAGCTCTCCGAAAGA 59.759 55.000 3.46 0.00 0.00 2.52
695 716 0.734253 CCACGTCAGCTCTCCGAAAG 60.734 60.000 3.46 0.00 0.00 2.62
696 717 1.289066 CCACGTCAGCTCTCCGAAA 59.711 57.895 3.46 0.00 0.00 3.46
697 718 2.962569 CCACGTCAGCTCTCCGAA 59.037 61.111 3.46 0.00 0.00 4.30
698 719 3.749064 GCCACGTCAGCTCTCCGA 61.749 66.667 3.46 0.00 0.00 4.55
700 721 3.575351 AACGCCACGTCAGCTCTCC 62.575 63.158 5.62 0.00 39.99 3.71
701 722 2.049063 AACGCCACGTCAGCTCTC 60.049 61.111 5.62 0.00 39.99 3.20
702 723 2.356313 CAACGCCACGTCAGCTCT 60.356 61.111 5.62 0.00 39.99 4.09
703 724 3.414700 CCAACGCCACGTCAGCTC 61.415 66.667 5.62 0.00 39.99 4.09
704 725 2.731691 AATCCAACGCCACGTCAGCT 62.732 55.000 5.62 0.00 39.99 4.24
705 726 1.852067 AAATCCAACGCCACGTCAGC 61.852 55.000 0.00 0.00 39.99 4.26
706 727 0.165944 GAAATCCAACGCCACGTCAG 59.834 55.000 0.00 0.00 39.99 3.51
707 728 1.231958 GGAAATCCAACGCCACGTCA 61.232 55.000 0.00 0.00 39.99 4.35
708 729 1.500396 GGAAATCCAACGCCACGTC 59.500 57.895 0.00 0.00 39.99 4.34
709 730 2.322081 CGGAAATCCAACGCCACGT 61.322 57.895 0.00 0.00 43.97 4.49
710 731 2.478746 CGGAAATCCAACGCCACG 59.521 61.111 0.00 0.00 35.14 4.94
711 732 1.029947 ATCCGGAAATCCAACGCCAC 61.030 55.000 9.01 0.00 35.14 5.01
712 733 0.322997 AATCCGGAAATCCAACGCCA 60.323 50.000 9.01 0.00 35.14 5.69
713 734 0.815095 AAATCCGGAAATCCAACGCC 59.185 50.000 9.01 0.00 35.14 5.68
714 735 1.531058 CGAAATCCGGAAATCCAACGC 60.531 52.381 9.01 0.00 35.14 4.84
715 736 1.735571 ACGAAATCCGGAAATCCAACG 59.264 47.619 9.01 10.34 43.93 4.10
716 737 2.096980 GGACGAAATCCGGAAATCCAAC 59.903 50.000 9.01 3.03 43.93 3.77
717 738 2.361789 GGACGAAATCCGGAAATCCAA 58.638 47.619 9.01 0.00 43.93 3.53
718 739 2.032680 GGACGAAATCCGGAAATCCA 57.967 50.000 9.01 0.00 43.93 3.41
727 748 0.094730 CGTTCTTGCGGACGAAATCC 59.905 55.000 0.00 0.00 45.20 3.01
728 749 0.788391 ACGTTCTTGCGGACGAAATC 59.212 50.000 0.00 0.00 35.98 2.17
729 750 1.223187 AACGTTCTTGCGGACGAAAT 58.777 45.000 0.00 0.00 35.98 2.17
730 751 1.850377 TAACGTTCTTGCGGACGAAA 58.150 45.000 2.82 0.00 35.98 3.46
731 752 1.522258 GTTAACGTTCTTGCGGACGAA 59.478 47.619 2.82 0.00 35.98 3.85
732 753 1.130955 GTTAACGTTCTTGCGGACGA 58.869 50.000 2.82 0.00 35.98 4.20
733 754 0.854062 TGTTAACGTTCTTGCGGACG 59.146 50.000 2.82 0.00 35.98 4.79
734 755 2.129607 TCTGTTAACGTTCTTGCGGAC 58.870 47.619 2.82 0.00 35.98 4.79
735 756 2.512485 TCTGTTAACGTTCTTGCGGA 57.488 45.000 2.82 1.39 35.98 5.54
736 757 2.542595 AGTTCTGTTAACGTTCTTGCGG 59.457 45.455 2.82 0.00 35.98 5.69
737 758 3.489785 AGAGTTCTGTTAACGTTCTTGCG 59.510 43.478 2.82 0.00 37.94 4.85
738 759 5.405331 AAGAGTTCTGTTAACGTTCTTGC 57.595 39.130 2.82 0.00 0.00 4.01
739 760 9.763465 TTTTTAAGAGTTCTGTTAACGTTCTTG 57.237 29.630 2.82 0.00 0.00 3.02
740 761 9.764870 GTTTTTAAGAGTTCTGTTAACGTTCTT 57.235 29.630 2.82 0.88 0.00 2.52
741 762 8.938906 TGTTTTTAAGAGTTCTGTTAACGTTCT 58.061 29.630 2.82 0.00 0.00 3.01
742 763 9.545611 TTGTTTTTAAGAGTTCTGTTAACGTTC 57.454 29.630 2.82 0.00 0.00 3.95
744 765 9.498307 CATTGTTTTTAAGAGTTCTGTTAACGT 57.502 29.630 0.26 0.00 0.00 3.99
745 766 9.498307 ACATTGTTTTTAAGAGTTCTGTTAACG 57.502 29.630 0.26 0.00 0.00 3.18
749 770 8.956426 TCTGACATTGTTTTTAAGAGTTCTGTT 58.044 29.630 0.00 0.00 0.00 3.16
750 771 8.506168 TCTGACATTGTTTTTAAGAGTTCTGT 57.494 30.769 0.00 0.00 0.00 3.41
751 772 9.787532 TTTCTGACATTGTTTTTAAGAGTTCTG 57.212 29.630 0.00 0.00 0.00 3.02
754 775 9.921637 TGTTTTCTGACATTGTTTTTAAGAGTT 57.078 25.926 0.00 0.00 0.00 3.01
785 806 3.242641 TGACAACGCAGCTATAGACGTAG 60.243 47.826 13.87 0.00 37.87 3.51
811 832 9.917887 ACTAGGGCTAATATCTATATAACGTGT 57.082 33.333 0.00 0.00 0.00 4.49
823 844 4.080687 ACCGTGAGACTAGGGCTAATATC 58.919 47.826 0.00 0.00 0.00 1.63
881 919 4.394729 TCACAACCATCCAAAGAGTAACC 58.605 43.478 0.00 0.00 0.00 2.85
893 931 8.064222 CGATTGACAAATAGTATCACAACCATC 58.936 37.037 0.00 0.00 0.00 3.51
897 935 8.276325 GGATCGATTGACAAATAGTATCACAAC 58.724 37.037 0.00 0.00 0.00 3.32
926 964 6.530120 AGGACGCATATATATCTCGATCTCT 58.470 40.000 16.44 8.09 0.00 3.10
927 965 6.128391 GGAGGACGCATATATATCTCGATCTC 60.128 46.154 16.44 17.74 0.00 2.75
1173 1214 1.143401 TGTGTGGTACCGCGTTTCA 59.857 52.632 20.23 13.21 0.00 2.69
1314 1355 0.610174 TGAAGAGCTCGATGTTGCCT 59.390 50.000 8.37 0.00 0.00 4.75
1414 1455 5.067936 TCCCAAGAAGATCATCTAAGTCGAC 59.932 44.000 7.70 7.70 0.00 4.20
1420 1461 9.883293 TCTTATACTCCCAAGAAGATCATCTAA 57.117 33.333 0.00 0.00 0.00 2.10
1422 1463 8.971032 ATCTTATACTCCCAAGAAGATCATCT 57.029 34.615 0.00 0.00 32.67 2.90
1458 1510 0.035152 AGAATCATGCAAGCGGGACA 60.035 50.000 0.00 0.00 0.00 4.02
1466 1518 4.380128 GCAGACACATCAAGAATCATGCAA 60.380 41.667 0.00 0.00 0.00 4.08
1506 1572 1.160137 GTACCGATCGCCCGTAGTAT 58.840 55.000 10.32 0.00 0.00 2.12
1788 1860 8.689061 AGTAACAAACTAAAATCCTTTCCGTTT 58.311 29.630 0.00 0.00 36.36 3.60
1868 1940 8.100164 TGTCCTAATGGATGCGATCAAATATTA 58.900 33.333 0.00 0.00 45.29 0.98
1875 1947 3.836365 TTGTCCTAATGGATGCGATCA 57.164 42.857 0.00 0.00 45.29 2.92
1989 2062 3.720193 CACGCTGCCAGCACTGTC 61.720 66.667 18.21 0.00 42.58 3.51
2190 2263 1.066787 GGGCACTACCAGAGTCAGAAC 60.067 57.143 0.00 0.00 42.05 3.01
2191 2264 1.267121 GGGCACTACCAGAGTCAGAA 58.733 55.000 0.00 0.00 42.05 3.02
2193 2266 1.198713 ATGGGCACTACCAGAGTCAG 58.801 55.000 0.00 0.00 45.20 3.51
2201 2275 3.066203 CGAAATACCAAATGGGCACTACC 59.934 47.826 4.17 0.00 42.05 3.18
2206 2280 4.337145 ACTAACGAAATACCAAATGGGCA 58.663 39.130 4.17 0.00 42.05 5.36
2241 2315 1.151668 GGCACGCAGGATGATCATAC 58.848 55.000 10.19 10.19 39.69 2.39
2251 2325 1.858091 CTCTAATACAGGCACGCAGG 58.142 55.000 0.00 0.00 0.00 4.85
2252 2326 1.212616 GCTCTAATACAGGCACGCAG 58.787 55.000 0.00 0.00 0.00 5.18
2253 2327 0.527600 CGCTCTAATACAGGCACGCA 60.528 55.000 0.00 0.00 0.00 5.24
2254 2328 0.248907 TCGCTCTAATACAGGCACGC 60.249 55.000 0.00 0.00 0.00 5.34
2255 2329 1.333931 TCTCGCTCTAATACAGGCACG 59.666 52.381 0.00 0.00 0.00 5.34
2256 2330 2.860582 GCTCTCGCTCTAATACAGGCAC 60.861 54.545 0.00 0.00 0.00 5.01
2395 2473 1.313772 TCGTCTCTAGGAGAGCATGC 58.686 55.000 10.51 10.51 42.04 4.06
2416 2494 3.819564 TCCAAGGAACTACCGATGATG 57.180 47.619 0.00 0.00 44.74 3.07
2424 2502 3.984508 TCGATCGATCCAAGGAACTAC 57.015 47.619 19.51 0.00 38.49 2.73
2434 2512 7.621832 GATAGATTCATCAATCGATCGATCC 57.378 40.000 29.48 11.79 43.05 3.36
2645 2742 3.365465 CCAATCAATCCAAAACGTACGCA 60.365 43.478 16.72 0.00 0.00 5.24
2667 2772 5.757320 CACATCTGAATGAGGAAGACCATAC 59.243 44.000 0.00 0.00 36.08 2.39
2669 2774 4.778579 CACATCTGAATGAGGAAGACCAT 58.221 43.478 0.00 0.00 36.08 3.55
2738 2843 0.949105 ACCATCAAGGCGTCGTTGAC 60.949 55.000 14.16 0.00 40.25 3.18
2743 2848 0.456221 AGTAGACCATCAAGGCGTCG 59.544 55.000 0.00 0.00 43.14 5.12
3022 3129 5.422666 CTGTTATTCTCACAACAGCAACA 57.577 39.130 1.90 0.00 43.57 3.33
3193 3300 5.293319 AGAAGATGATGTTGCTAGCTGAT 57.707 39.130 17.23 4.84 0.00 2.90
3358 3466 0.608130 ATGTCCTTCAGTACGCTGCA 59.392 50.000 0.00 0.00 42.29 4.41
3437 3545 8.449397 CACTCCATGAGAAAATGAAGACTTAAG 58.551 37.037 0.00 0.00 33.32 1.85
3685 3801 5.764686 CCTTCCTACACAAAGCATGCATATA 59.235 40.000 21.98 2.42 0.00 0.86
3815 3931 7.004086 TCTTGTTATTCCAATATAAGCTGGGG 58.996 38.462 0.00 0.00 33.19 4.96
3885 4001 3.070878 TCTTTGGTGTGTAGCTCATCACA 59.929 43.478 12.96 12.96 41.37 3.58
3898 4014 3.815401 CGGAACTTCAATCTCTTTGGTGT 59.185 43.478 0.00 0.00 35.92 4.16
3956 4073 2.885135 TTGGTTCTCCAGCATGTCAT 57.115 45.000 0.00 0.00 45.22 3.06
3958 4075 3.256631 ACAAATTGGTTCTCCAGCATGTC 59.743 43.478 0.00 0.00 45.22 3.06
3961 4079 2.564062 CCACAAATTGGTTCTCCAGCAT 59.436 45.455 0.00 0.00 45.22 3.79
3976 4094 4.016444 GCCTCCTAATCATCAACCACAAA 58.984 43.478 0.00 0.00 0.00 2.83
4045 4164 4.025979 CCGCCTTTATAAGACACTAAAGCG 60.026 45.833 0.00 0.00 34.87 4.68
4051 4170 2.835764 TGTCCCGCCTTTATAAGACACT 59.164 45.455 0.26 0.00 29.75 3.55
4071 4190 1.732259 CCGGTTCCGACTGAAAGAATG 59.268 52.381 13.08 0.00 37.43 2.67
4101 4220 5.067805 AGTTATGACAGACACATCGCTATCA 59.932 40.000 0.00 0.00 0.00 2.15
4122 4241 6.049790 GGCGAGTCCTAAGATTGATAAAGTT 58.950 40.000 0.00 0.00 0.00 2.66
4147 4266 0.875059 CACCTCAGAAAAACCGAGCC 59.125 55.000 0.00 0.00 0.00 4.70
4155 4274 4.908601 TCCTTATGAGCACCTCAGAAAA 57.091 40.909 4.18 0.00 44.08 2.29
4173 4292 1.671850 CGTTGAACGCACACCTATCCT 60.672 52.381 4.26 0.00 33.65 3.24
4203 4323 8.593945 AGCTCAATTGAAAATAGGTGGAATTA 57.406 30.769 9.88 0.00 0.00 1.40
4241 4361 3.499929 GAGCCGCGGTGCTAGCATA 62.500 63.158 28.70 0.00 42.95 3.14
4266 4386 2.515523 GGCTCGCCTGCATCACAT 60.516 61.111 0.00 0.00 34.04 3.21
4316 4436 0.765135 TCACCAAGGAAGGGACGGAA 60.765 55.000 0.00 0.00 0.00 4.30
4409 4529 4.352001 ACCTCTATGAATGCATGTACCCAT 59.648 41.667 0.00 2.26 35.94 4.00
4501 4621 3.830178 GGTGGGTTGTAGGTAGCATTTTT 59.170 43.478 0.00 0.00 0.00 1.94
4502 4622 3.181427 TGGTGGGTTGTAGGTAGCATTTT 60.181 43.478 0.00 0.00 0.00 1.82
4503 4623 2.377193 TGGTGGGTTGTAGGTAGCATTT 59.623 45.455 0.00 0.00 0.00 2.32
4504 4624 1.989586 TGGTGGGTTGTAGGTAGCATT 59.010 47.619 0.00 0.00 0.00 3.56
4505 4625 1.663911 TGGTGGGTTGTAGGTAGCAT 58.336 50.000 0.00 0.00 0.00 3.79
4506 4626 1.436326 TTGGTGGGTTGTAGGTAGCA 58.564 50.000 0.00 0.00 0.00 3.49
4507 4627 2.365582 CATTGGTGGGTTGTAGGTAGC 58.634 52.381 0.00 0.00 0.00 3.58
4508 4628 2.026262 AGCATTGGTGGGTTGTAGGTAG 60.026 50.000 0.00 0.00 0.00 3.18
4509 4629 1.989586 AGCATTGGTGGGTTGTAGGTA 59.010 47.619 0.00 0.00 0.00 3.08
4510 4630 0.777446 AGCATTGGTGGGTTGTAGGT 59.223 50.000 0.00 0.00 0.00 3.08
4511 4631 2.799126 TAGCATTGGTGGGTTGTAGG 57.201 50.000 0.00 0.00 0.00 3.18
4512 4632 3.378112 CACATAGCATTGGTGGGTTGTAG 59.622 47.826 0.00 0.00 0.00 2.74
4513 4633 3.245087 ACACATAGCATTGGTGGGTTGTA 60.245 43.478 0.00 0.00 36.87 2.41
4514 4634 2.170166 CACATAGCATTGGTGGGTTGT 58.830 47.619 0.00 0.00 0.00 3.32
4515 4635 2.170166 ACACATAGCATTGGTGGGTTG 58.830 47.619 0.00 0.00 36.87 3.77
4516 4636 2.562298 CAACACATAGCATTGGTGGGTT 59.438 45.455 0.00 0.00 39.89 4.11
4517 4637 2.170166 CAACACATAGCATTGGTGGGT 58.830 47.619 0.00 0.00 36.87 4.51
4518 4638 1.135024 GCAACACATAGCATTGGTGGG 60.135 52.381 0.00 0.00 36.87 4.61
4519 4639 1.820519 AGCAACACATAGCATTGGTGG 59.179 47.619 0.00 0.00 36.87 4.61
4520 4640 2.488937 TGAGCAACACATAGCATTGGTG 59.511 45.455 0.00 0.00 34.37 4.17
4521 4641 2.794103 TGAGCAACACATAGCATTGGT 58.206 42.857 0.00 0.00 36.79 3.67
4522 4642 4.380841 AATGAGCAACACATAGCATTGG 57.619 40.909 0.00 0.00 0.00 3.16
4523 4643 5.297527 TCCTAATGAGCAACACATAGCATTG 59.702 40.000 0.00 0.00 0.00 2.82
4524 4644 5.439721 TCCTAATGAGCAACACATAGCATT 58.560 37.500 0.00 0.00 0.00 3.56
4525 4645 5.039920 TCCTAATGAGCAACACATAGCAT 57.960 39.130 0.00 0.00 0.00 3.79
4526 4646 4.445453 CTCCTAATGAGCAACACATAGCA 58.555 43.478 0.00 0.00 33.47 3.49
4538 4658 3.380004 ACTTCTGACTCGCTCCTAATGAG 59.620 47.826 0.00 0.00 44.47 2.90
4539 4659 3.129462 CACTTCTGACTCGCTCCTAATGA 59.871 47.826 0.00 0.00 0.00 2.57
4540 4660 3.443037 CACTTCTGACTCGCTCCTAATG 58.557 50.000 0.00 0.00 0.00 1.90
4541 4661 2.428890 CCACTTCTGACTCGCTCCTAAT 59.571 50.000 0.00 0.00 0.00 1.73
4542 4662 1.819288 CCACTTCTGACTCGCTCCTAA 59.181 52.381 0.00 0.00 0.00 2.69
4543 4663 1.464734 CCACTTCTGACTCGCTCCTA 58.535 55.000 0.00 0.00 0.00 2.94
4544 4664 1.254284 CCCACTTCTGACTCGCTCCT 61.254 60.000 0.00 0.00 0.00 3.69
4545 4665 1.216710 CCCACTTCTGACTCGCTCC 59.783 63.158 0.00 0.00 0.00 4.70
4546 4666 0.109039 GACCCACTTCTGACTCGCTC 60.109 60.000 0.00 0.00 0.00 5.03
4547 4667 1.867919 CGACCCACTTCTGACTCGCT 61.868 60.000 0.00 0.00 0.00 4.93
4548 4668 1.444553 CGACCCACTTCTGACTCGC 60.445 63.158 0.00 0.00 0.00 5.03
4549 4669 0.169230 CTCGACCCACTTCTGACTCG 59.831 60.000 0.00 0.00 0.00 4.18
4550 4670 0.528470 CCTCGACCCACTTCTGACTC 59.472 60.000 0.00 0.00 0.00 3.36
4551 4671 1.536943 GCCTCGACCCACTTCTGACT 61.537 60.000 0.00 0.00 0.00 3.41
4552 4672 1.079750 GCCTCGACCCACTTCTGAC 60.080 63.158 0.00 0.00 0.00 3.51
4553 4673 2.283529 GGCCTCGACCCACTTCTGA 61.284 63.158 0.00 0.00 0.00 3.27
4554 4674 0.970937 TAGGCCTCGACCCACTTCTG 60.971 60.000 9.68 0.00 0.00 3.02
4555 4675 0.684805 CTAGGCCTCGACCCACTTCT 60.685 60.000 9.68 0.00 0.00 2.85
4556 4676 1.677637 CCTAGGCCTCGACCCACTTC 61.678 65.000 9.68 0.00 0.00 3.01
4557 4677 1.686110 CCTAGGCCTCGACCCACTT 60.686 63.158 9.68 0.00 0.00 3.16
4558 4678 1.578215 TACCTAGGCCTCGACCCACT 61.578 60.000 9.68 0.00 0.00 4.00
4559 4679 0.685458 TTACCTAGGCCTCGACCCAC 60.685 60.000 9.68 0.00 0.00 4.61
4560 4680 0.396695 CTTACCTAGGCCTCGACCCA 60.397 60.000 9.68 0.00 0.00 4.51
4561 4681 0.106318 TCTTACCTAGGCCTCGACCC 60.106 60.000 9.68 0.00 0.00 4.46
4562 4682 1.320507 CTCTTACCTAGGCCTCGACC 58.679 60.000 9.68 0.00 0.00 4.79
4563 4683 1.320507 CCTCTTACCTAGGCCTCGAC 58.679 60.000 9.68 0.00 0.00 4.20
4564 4684 3.823369 CCTCTTACCTAGGCCTCGA 57.177 57.895 9.68 0.00 0.00 4.04
4570 4690 2.370189 CCCAGATTGCCTCTTACCTAGG 59.630 54.545 7.41 7.41 37.17 3.02
4571 4691 3.309296 TCCCAGATTGCCTCTTACCTAG 58.691 50.000 0.00 0.00 29.16 3.02
4572 4692 3.414759 TCCCAGATTGCCTCTTACCTA 57.585 47.619 0.00 0.00 29.16 3.08
4573 4693 2.270434 TCCCAGATTGCCTCTTACCT 57.730 50.000 0.00 0.00 29.16 3.08
4574 4694 2.422093 CCTTCCCAGATTGCCTCTTACC 60.422 54.545 0.00 0.00 29.16 2.85
4575 4695 2.239907 ACCTTCCCAGATTGCCTCTTAC 59.760 50.000 0.00 0.00 29.16 2.34
4576 4696 2.562296 ACCTTCCCAGATTGCCTCTTA 58.438 47.619 0.00 0.00 29.16 2.10
4577 4697 1.376649 ACCTTCCCAGATTGCCTCTT 58.623 50.000 0.00 0.00 29.16 2.85
4578 4698 1.376649 AACCTTCCCAGATTGCCTCT 58.623 50.000 0.00 0.00 33.14 3.69
4579 4699 2.222227 AAACCTTCCCAGATTGCCTC 57.778 50.000 0.00 0.00 0.00 4.70
4580 4700 2.158325 TGAAAACCTTCCCAGATTGCCT 60.158 45.455 0.00 0.00 0.00 4.75
4581 4701 2.029020 GTGAAAACCTTCCCAGATTGCC 60.029 50.000 0.00 0.00 0.00 4.52
4582 4702 2.029020 GGTGAAAACCTTCCCAGATTGC 60.029 50.000 0.00 0.00 0.00 3.56
4583 4703 3.230134 TGGTGAAAACCTTCCCAGATTG 58.770 45.455 0.00 0.00 31.83 2.67
4584 4704 3.117131 ACTGGTGAAAACCTTCCCAGATT 60.117 43.478 20.13 5.30 44.60 2.40
4585 4705 2.447047 ACTGGTGAAAACCTTCCCAGAT 59.553 45.455 20.13 8.89 44.60 2.90
4586 4706 1.850345 ACTGGTGAAAACCTTCCCAGA 59.150 47.619 20.13 0.00 44.60 3.86
4587 4707 2.364972 ACTGGTGAAAACCTTCCCAG 57.635 50.000 15.23 15.23 45.83 4.45
4588 4708 2.838637 AACTGGTGAAAACCTTCCCA 57.161 45.000 0.00 0.00 33.46 4.37
4589 4709 3.431626 CCAAAACTGGTGAAAACCTTCCC 60.432 47.826 0.00 0.00 0.00 3.97
4590 4710 3.431626 CCCAAAACTGGTGAAAACCTTCC 60.432 47.826 0.00 0.00 0.00 3.46
4591 4711 3.449377 TCCCAAAACTGGTGAAAACCTTC 59.551 43.478 0.00 0.00 0.00 3.46
4592 4712 3.445987 TCCCAAAACTGGTGAAAACCTT 58.554 40.909 0.00 0.00 0.00 3.50
4593 4713 3.108847 TCCCAAAACTGGTGAAAACCT 57.891 42.857 0.00 0.00 0.00 3.50
4594 4714 3.449377 TCTTCCCAAAACTGGTGAAAACC 59.551 43.478 0.00 0.00 0.00 3.27
4595 4715 4.729227 TCTTCCCAAAACTGGTGAAAAC 57.271 40.909 0.00 0.00 0.00 2.43
4596 4716 5.163353 GGAATCTTCCCAAAACTGGTGAAAA 60.163 40.000 0.00 0.00 41.62 2.29
4597 4717 4.343814 GGAATCTTCCCAAAACTGGTGAAA 59.656 41.667 0.00 0.00 41.62 2.69
4598 4718 3.895041 GGAATCTTCCCAAAACTGGTGAA 59.105 43.478 0.00 0.00 41.62 3.18
4599 4719 3.496331 GGAATCTTCCCAAAACTGGTGA 58.504 45.455 0.00 0.00 41.62 4.02
4600 4720 3.942130 GGAATCTTCCCAAAACTGGTG 57.058 47.619 0.00 0.00 41.62 4.17
4612 4732 6.923508 AGAAACAAAAACCGATTGGAATCTTC 59.076 34.615 5.81 0.00 39.21 2.87
4613 4733 6.816136 AGAAACAAAAACCGATTGGAATCTT 58.184 32.000 5.81 0.00 39.21 2.40
4614 4734 6.405278 AGAAACAAAAACCGATTGGAATCT 57.595 33.333 5.81 0.00 39.21 2.40
4615 4735 7.477144 AAAGAAACAAAAACCGATTGGAATC 57.523 32.000 5.81 0.00 39.21 2.52
4616 4736 7.768582 AGAAAAGAAACAAAAACCGATTGGAAT 59.231 29.630 5.81 0.00 39.21 3.01
4617 4737 7.100409 AGAAAAGAAACAAAAACCGATTGGAA 58.900 30.769 5.81 0.00 39.21 3.53
4618 4738 6.635755 AGAAAAGAAACAAAAACCGATTGGA 58.364 32.000 5.81 0.00 39.21 3.53
4619 4739 6.756542 AGAGAAAAGAAACAAAAACCGATTGG 59.243 34.615 0.00 0.00 42.84 3.16
4620 4740 7.275560 ACAGAGAAAAGAAACAAAAACCGATTG 59.724 33.333 0.00 0.00 0.00 2.67
4621 4741 7.320399 ACAGAGAAAAGAAACAAAAACCGATT 58.680 30.769 0.00 0.00 0.00 3.34
4622 4742 6.863275 ACAGAGAAAAGAAACAAAAACCGAT 58.137 32.000 0.00 0.00 0.00 4.18
4623 4743 6.262193 ACAGAGAAAAGAAACAAAAACCGA 57.738 33.333 0.00 0.00 0.00 4.69
4624 4744 6.944557 AACAGAGAAAAGAAACAAAAACCG 57.055 33.333 0.00 0.00 0.00 4.44
4631 4751 9.364989 CCAACAAATAAACAGAGAAAAGAAACA 57.635 29.630 0.00 0.00 0.00 2.83
4632 4752 9.366216 ACCAACAAATAAACAGAGAAAAGAAAC 57.634 29.630 0.00 0.00 0.00 2.78
4633 4753 9.936759 AACCAACAAATAAACAGAGAAAAGAAA 57.063 25.926 0.00 0.00 0.00 2.52
4634 4754 9.936759 AAACCAACAAATAAACAGAGAAAAGAA 57.063 25.926 0.00 0.00 0.00 2.52
4635 4755 9.936759 AAAACCAACAAATAAACAGAGAAAAGA 57.063 25.926 0.00 0.00 0.00 2.52
4637 4757 9.936759 AGAAAACCAACAAATAAACAGAGAAAA 57.063 25.926 0.00 0.00 0.00 2.29
4638 4758 9.364989 CAGAAAACCAACAAATAAACAGAGAAA 57.635 29.630 0.00 0.00 0.00 2.52
4639 4759 8.744652 TCAGAAAACCAACAAATAAACAGAGAA 58.255 29.630 0.00 0.00 0.00 2.87
4640 4760 8.287439 TCAGAAAACCAACAAATAAACAGAGA 57.713 30.769 0.00 0.00 0.00 3.10
4641 4761 8.807581 GTTCAGAAAACCAACAAATAAACAGAG 58.192 33.333 0.00 0.00 0.00 3.35
4642 4762 7.486551 CGTTCAGAAAACCAACAAATAAACAGA 59.513 33.333 0.00 0.00 0.00 3.41
4643 4763 7.274686 ACGTTCAGAAAACCAACAAATAAACAG 59.725 33.333 0.00 0.00 0.00 3.16
4644 4764 7.091443 ACGTTCAGAAAACCAACAAATAAACA 58.909 30.769 0.00 0.00 0.00 2.83
4645 4765 7.514573 ACGTTCAGAAAACCAACAAATAAAC 57.485 32.000 0.00 0.00 0.00 2.01
4646 4766 8.535690 AAACGTTCAGAAAACCAACAAATAAA 57.464 26.923 0.00 0.00 0.00 1.40
4647 4767 8.535690 AAAACGTTCAGAAAACCAACAAATAA 57.464 26.923 0.00 0.00 0.00 1.40
4648 4768 7.008447 CGAAAACGTTCAGAAAACCAACAAATA 59.992 33.333 0.00 0.00 32.89 1.40
4649 4769 6.183360 CGAAAACGTTCAGAAAACCAACAAAT 60.183 34.615 0.00 0.00 32.89 2.32
4650 4770 5.117287 CGAAAACGTTCAGAAAACCAACAAA 59.883 36.000 0.00 0.00 32.89 2.83
4651 4771 4.617645 CGAAAACGTTCAGAAAACCAACAA 59.382 37.500 0.00 0.00 32.89 2.83
4652 4772 4.159857 CGAAAACGTTCAGAAAACCAACA 58.840 39.130 0.00 0.00 32.89 3.33
4653 4773 4.029750 CACGAAAACGTTCAGAAAACCAAC 59.970 41.667 0.00 0.00 32.89 3.77
4654 4774 4.159857 CACGAAAACGTTCAGAAAACCAA 58.840 39.130 0.00 0.00 32.89 3.67
4655 4775 3.188873 ACACGAAAACGTTCAGAAAACCA 59.811 39.130 0.00 0.00 32.89 3.67
4656 4776 3.750512 ACACGAAAACGTTCAGAAAACC 58.249 40.909 0.00 0.00 32.89 3.27
4657 4777 5.002189 CAGAACACGAAAACGTTCAGAAAAC 59.998 40.000 0.00 0.00 43.20 2.43
4658 4778 5.083389 CAGAACACGAAAACGTTCAGAAAA 58.917 37.500 0.00 0.00 43.20 2.29
4659 4779 4.643953 CAGAACACGAAAACGTTCAGAAA 58.356 39.130 0.00 0.00 43.20 2.52
4660 4780 4.253352 CAGAACACGAAAACGTTCAGAA 57.747 40.909 0.00 0.00 43.20 3.02
4661 4781 3.918258 CAGAACACGAAAACGTTCAGA 57.082 42.857 0.00 0.00 43.20 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.